BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032447
         (140 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EAF|A Chain A, Crystal Structure Of Abc Transporter, Substrate Binding
          Protein Aeropyrum Pernix
          Length = 391

 Score = 29.3 bits (64), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 9  NPRTVEEVFRDFKGRRAGMIKAL---TTDVEEFYQQCDPEK 46
          NP T EE +R+F+ R  G+I  +   T D E+   Q D +K
Sbjct: 60 NPTTAEEYYREFRDRY-GVIAIIGWGTADTEKLSDQVDTDK 99


>pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Complex With The
           Hsc70 Atpase Domain
 pdb|3FZF|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
 pdb|3FZH|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
           Molecule Inhibitors
 pdb|3FZK|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
           Molecule Inhibitors
 pdb|3FZL|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
           Molecule Inhibitors
 pdb|3FZM|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
           Molecule Inhibitors
 pdb|3LDQ|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
           MOLECULE Inhibitor
 pdb|3M3Z|B Chain B, Crystal Structure Of Hsc70/bag1 In Complex With Small
           Molecule Inhibitor
          Length = 114

 Score = 26.9 bits (58), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 15  EVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLC 50
           E F+D + +R G++K     V+ F  +CD  ++N+C
Sbjct: 79  ENFKDSRLKRKGLVKK----VQAFLAECDTVEQNIC 110


>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
           Integrin-Binding Protein)
 pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
           Binding Protein)
 pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
           Kinase- Binding Protein
 pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
           Kinase- Binding Protein
 pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
 pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
          Length = 183

 Score = 26.6 bits (57), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 82  ARDGMQDKDWLSLVAVHSDAWLLAVAFYFGAR-FGFDKADRYINSLEILLLVKC 134
           A+D +  +D+L L++V SD     +  ++  R F FD  D  +N  ++  LV C
Sbjct: 74  AKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDD-DGTLNREDLSRLVNC 126


>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
 pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
 pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
           Cytoplasmic Domain Of The Integrin Aiib Subunit
          Length = 214

 Score = 26.6 bits (57), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 82  ARDGMQDKDWLSLVAVHSDAWLLAVAFYFGAR-FGFDKADRYINSLEILLLVKC 134
           A+D +  +D+L L++V SD     +  ++  R F FD  D  +N  ++  LV C
Sbjct: 105 AKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDD-DGTLNREDLSRLVNC 157


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,828,714
Number of Sequences: 62578
Number of extensions: 125592
Number of successful extensions: 242
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 4
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)