Query 032447
Match_columns 140
No_of_seqs 92 out of 94
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 23:23:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpd_A Serine/threonine-protei 37.1 23 0.00079 29.2 3.1 38 33-70 290-336 (440)
2 3g2b_A Coenzyme PQQ synthesis 30.8 41 0.0014 22.9 3.1 32 10-41 55-86 (95)
3 1qjt_A EH1, epidermal growth f 28.5 23 0.00079 23.1 1.4 43 33-78 45-98 (99)
4 1egw_A MADS box transcription 26.7 38 0.0013 22.8 2.3 37 19-60 19-55 (77)
5 2diq_A Tudor and KH domain-con 25.7 54 0.0018 22.1 2.9 38 23-60 7-50 (110)
6 2yqy_A TT2238, hypothetical pr 24.5 57 0.002 21.7 2.8 23 11-33 104-126 (169)
7 3hdi_A Processing protease; CA 23.6 74 0.0025 24.2 3.6 30 25-54 373-403 (421)
8 1mnm_A Protein (MCM1 transcrip 22.4 33 0.0011 24.5 1.3 26 18-47 34-59 (100)
9 3nrw_A Phage integrase/site-sp 21.9 84 0.0029 20.1 3.2 36 8-43 4-44 (117)
10 3p57_A Myocyte-specific enhanc 21.7 35 0.0012 23.9 1.3 30 19-53 19-48 (90)
11 1hbx_A SRF, serum response fac 21.7 35 0.0012 24.0 1.3 26 18-47 28-53 (92)
12 3tt2_A GCN5-related N-acetyltr 21.6 1.4E+02 0.0047 21.2 4.5 20 22-41 95-114 (330)
13 3gy9_A GCN5-related N-acetyltr 21.0 54 0.0019 20.4 2.0 29 21-52 87-115 (150)
14 2o5a_A BH1328 protein; BHR21, 21.0 97 0.0033 22.5 3.7 35 25-61 45-79 (125)
15 1k6o_B SRF, serum response fac 20.9 55 0.0019 23.4 2.3 26 18-47 27-52 (103)
No 1
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=37.15 E-value=23 Score=29.19 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=27.3
Q ss_pred hhHHHHhhc---------CCcCCcceeeeeCCCCceeeeCCCCCCCC
Q 032447 33 TDVEEFYQQ---------CDPEKENLCLYGFPSEQWEVNLPAEEVPP 70 (140)
Q Consensus 33 ~Dve~Fy~~---------CDP~kenLcLYG~p~~~WeV~lPaeevPp 70 (140)
.|+++||+. +|---.|..+.=.++|+|.+.+==+-||.
T Consensus 290 ~d~~~~~rr~vfn~ligN~D~H~KN~s~l~~~~g~~~LaPaYDl~~~ 336 (440)
T 3tpd_A 290 KDRYDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISA 336 (440)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCGGGCEEEECGGGCEEECCCCCCCCS
T ss_pred HHHHHHHHHHHhhHhhcCCcCCccceEEEEcCCCceEECchhhcccc
Confidence 578888864 56666999976668899999944444443
No 2
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=30.79 E-value=41 Score=22.94 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=23.7
Q ss_pred CCCHHHHHHhhhhhHhHHHHhhhhhHHHHhhc
Q 032447 10 PRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQ 41 (140)
Q Consensus 10 prtvE~iF~Df~~RR~giirALT~Dve~Fy~~ 41 (140)
.||+++|=+....+=..=...+..||.+|.++
T Consensus 55 ~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~ 86 (95)
T 3g2b_A 55 TQSLAQIAQTLAAEFDADASEIETDVIELTTT 86 (95)
T ss_dssp SSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 58999998777766654445677899888764
No 3
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=28.54 E-value=23 Score=23.14 Aligned_cols=43 Identities=9% Similarity=0.233 Sum_probs=28.6
Q ss_pred hhHHHHhhcCCcCCcce-e---------e-eeCCCCceeeeCCCCCCCCCCCCCccC
Q 032447 33 TDVEEFYQQCDPEKENL-C---------L-YGFPSEQWEVNLPAEEVPPELPEPALG 78 (140)
Q Consensus 33 ~Dve~Fy~~CDP~kenL-c---------L-YG~p~~~WeV~lPaeevPpeLPEPalG 78 (140)
.++++.++.+|.+.... . + +..-.| ..+|.+.+|..+|-|.+|
T Consensus 45 ~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g---~~~~~~~l~~~~p~p~~~ 98 (99)
T 1qjt_A 45 LILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNG---LEVSLSSLSLAVPPPRFH 98 (99)
T ss_dssp HHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTT---CCSSGGGCSSCCCCCSSC
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcC---CCCChhhccCCCCCCCCC
Confidence 47888999998876421 1 1 111222 257888999999999876
No 4
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=26.72 E-value=38 Score=22.82 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=24.3
Q ss_pred hhhhhHhHHHHhhhhhHHHHhhcCCcCCcceeeeeCCCCcee
Q 032447 19 DFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60 (140)
Q Consensus 19 Df~~RR~giirALT~Dve~Fy~~CDP~kenLcLYG~p~~~We 60 (140)
-|+.||.||+|=- .|+--+||-+-. |-+|+..+.-++
T Consensus 19 TfsKRr~GL~KKA----~ELsvLCdaeV~-livfs~~gk~~~ 55 (77)
T 1egw_A 19 TFTKRKFGLMKKA----YELSVLCDCEIA-LIIFNSSNKLFQ 55 (77)
T ss_dssp HHHHHHHHHHHHH----HHHHHHTTCEEE-EEEECTTCCEEE
T ss_pred HHHHhHHHHHHHH----HHHhcccCCeEE-EEEECCCCCEee
Confidence 4899999998743 567788997654 344554333333
No 5
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=25.71 E-value=54 Score=22.08 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=27.1
Q ss_pred hHhHHHHhhhhhHHHHhhcCC-----cCCcceeeeeCC-CCcee
Q 032447 23 RRAGMIKALTTDVEEFYQQCD-----PEKENLCLYGFP-SEQWE 60 (140)
Q Consensus 23 RR~giirALT~Dve~Fy~~CD-----P~kenLcLYG~p-~~~We 60 (140)
+|..-+..|+.+..+||+.-. |....+|+-=++ ||.|-
T Consensus 7 ~~~~~l~~L~~~m~~~y~~~~~~~~~~~~G~~c~a~~~~d~~wy 50 (110)
T 2diq_A 7 GRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWY 50 (110)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCCCCCCCCTTCEEEECCTTTCSCE
T ss_pred hHHHHHHHHHHHHHHHHccCCCCCCCCCCCCEEEEEECCCCeEE
Confidence 455667889999999998643 334567876554 78884
No 6
>2yqy_A TT2238, hypothetical protein TTHA0303; four-helix-bundle, NPPSFA, national project on protein struc functional analyses; 2.00A {Thermus thermophilus}
Probab=24.53 E-value=57 Score=21.73 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=18.7
Q ss_pred CCHHHHHHhhhhhHhHHHHhhhh
Q 032447 11 RTVEEVFRDFKGRRAGMIKALTT 33 (140)
Q Consensus 11 rtvE~iF~Df~~RR~giirALT~ 33 (140)
.+.+++-+.|..-|+.++..|.+
T Consensus 104 ~~~~~ll~~~~~~~~~~~~~l~~ 126 (169)
T 2yqy_A 104 LSLEEVLALLDRARAFLLEEVAK 126 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999998888888776654
No 7
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=23.57 E-value=74 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=22.4
Q ss_pred hHHHHhhh-hhHHHHhhcCCcCCcceeeeeC
Q 032447 25 AGMIKALT-TDVEEFYQQCDPEKENLCLYGF 54 (140)
Q Consensus 25 ~giirALT-~Dve~Fy~~CDP~kenLcLYG~ 54 (140)
...|+++| .||.++.++--|++-.++++|.
T Consensus 373 ~~~i~~vt~~dv~~~a~~~~~~~~~~~vvgp 403 (421)
T 3hdi_A 373 IEQINAVQKQDVSRLAKILLSASPSISLINA 403 (421)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTSCCEEEEEES
T ss_pred HHHHHcCCHHHHHHHHHHHcccCcEEEEECc
Confidence 44577777 5888888875577778888884
No 8
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=22.37 E-value=33 Score=24.54 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=19.9
Q ss_pred HhhhhhHhHHHHhhhhhHHHHhhcCCcCCc
Q 032447 18 RDFKGRRAGMIKALTTDVEEFYQQCDPEKE 47 (140)
Q Consensus 18 ~Df~~RR~giirALT~Dve~Fy~~CDP~ke 47 (140)
--|+.||.||+|=- .|+--+||-+--
T Consensus 34 vTFsKRr~GL~KKA----~ELsvLCda~Va 59 (100)
T 1mnm_A 34 VTFSKRKHGIMKKA----FELSVLTGTQVL 59 (100)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHTCEEE
T ss_pred hhhhHhhhhHHHHH----HHHHHhcCCcEE
Confidence 35899999998743 667888987654
No 9
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=21.86 E-value=84 Score=20.09 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHhhhh-----hHhHHHHhhhhhHHHHhhcCC
Q 032447 8 NNPRTVEEVFRDFKG-----RRAGMIKALTTDVEEFYQQCD 43 (140)
Q Consensus 8 ~~prtvE~iF~Df~~-----RR~giirALT~Dve~Fy~~CD 43 (140)
+.+.|+++..++|.. +...=+++-..|+..|.+.|.
T Consensus 4 ~~~~t~~~~~~~fl~~l~~~~s~~Ti~~Y~~~l~~f~~~l~ 44 (117)
T 3nrw_A 4 RPSLSPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAE 44 (117)
T ss_dssp CCCCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 456799999888864 445668888999999998875
No 10
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=21.74 E-value=35 Score=23.90 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=21.3
Q ss_pred hhhhhHhHHHHhhhhhHHHHhhcCCcCCcceeeee
Q 032447 19 DFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYG 53 (140)
Q Consensus 19 Df~~RR~giirALT~Dve~Fy~~CDP~kenLcLYG 53 (140)
-|+.||.||+|=- .++--+||-+-. |.+|+
T Consensus 19 TFsKRr~GL~KKA----~ELsvLCda~Va-liifs 48 (90)
T 3p57_A 19 TFTKRKFGLMKKA----YELSVLCDCEIA-LIIFN 48 (90)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHTCEEE-EEEEC
T ss_pred HHHHhhhhHHHHH----HHHHhccCCceE-EEEEC
Confidence 5899999998743 567788997644 33344
No 11
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=21.67 E-value=35 Score=23.98 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=19.9
Q ss_pred HhhhhhHhHHHHhhhhhHHHHhhcCCcCCc
Q 032447 18 RDFKGRRAGMIKALTTDVEEFYQQCDPEKE 47 (140)
Q Consensus 18 ~Df~~RR~giirALT~Dve~Fy~~CDP~ke 47 (140)
--|+.||.||+|=- .|+.-+||-+--
T Consensus 28 vTFsKRr~GL~KKA----~ELsvLCda~V~ 53 (92)
T 1hbx_A 28 TTFSKRKTGIMKKA----YELSTLTGTQVL 53 (92)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHCCEEE
T ss_pred HHHHHhhhhHHHHH----HHHHhhcCCceE
Confidence 35899999998743 678888987654
No 12
>3tt2_A GCN5-related N-acetyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta sandwich; HET: MES; 2.73A {Sphaerobacter thermophilus}
Probab=21.62 E-value=1.4e+02 Score=21.20 Aligned_cols=20 Identities=30% Similarity=0.142 Sum_probs=14.9
Q ss_pred hhHhHHHHhhhhhHHHHhhc
Q 032447 22 GRRAGMIKALTTDVEEFYQQ 41 (140)
Q Consensus 22 ~RR~giirALT~Dve~Fy~~ 41 (140)
-||.||-++|.+-+++..++
T Consensus 95 ~rg~Gig~~Ll~~~~~~~~~ 114 (330)
T 3tt2_A 95 FRGMGLGTWLVQWGEEWIQD 114 (330)
T ss_dssp STTSSHHHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHH
Confidence 47778888888877776654
No 13
>3gy9_A GCN5-related N-acetyltransferase; YP_001815201.1, putative acetyltransferase; HET: MSE COA SO4; 1.52A {Exiguobacterium sibiricum 255-15} PDB: 3gya_A*
Probab=21.02 E-value=54 Score=20.37 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=22.4
Q ss_pred hhhHhHHHHhhhhhHHHHhhcCCcCCcceeee
Q 032447 21 KGRRAGMIKALTTDVEEFYQQCDPEKENLCLY 52 (140)
Q Consensus 21 ~~RR~giirALT~Dve~Fy~~CDP~kenLcLY 52 (140)
.-|+.||-++|.+.+.+..+. +...+.|.
T Consensus 87 ~~rg~Gig~~Ll~~~~~~a~~---~~~~i~l~ 115 (150)
T 3gy9_A 87 EARSHGIGTALLEKIMSEAFL---TYDRLVLY 115 (150)
T ss_dssp GGTTSSHHHHHHHHHHHHHTT---TCSEEEEC
T ss_pred hhcCCCHHHHHHHHHHHHHHh---CCCEEEEe
Confidence 458889999999999998877 45555543
No 14
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=21.01 E-value=97 Score=22.47 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=27.5
Q ss_pred hHHHHhhhhhHHHHhhcCCcCCcceeeeeCCCCceee
Q 032447 25 AGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 61 (140)
Q Consensus 25 ~giirALT~Dve~Fy~~CDP~kenLcLYG~p~~~WeV 61 (140)
.-=++|+...+++..+.. +...+..=|..++.|-+
T Consensus 45 ~rqv~Aiad~v~~~lk~~--g~~~~~~EG~~~~~WvL 79 (125)
T 2o5a_A 45 EKQVQAIAHELKKVAQEQ--GIEIKRLEGYEQARWVL 79 (125)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCCCCEEESTTTTSEEE
T ss_pred HHHHHHHHHHHHHHHHHc--CCccccccCCCCCCEEE
Confidence 345889999999888875 45667788999999975
No 15
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=20.94 E-value=55 Score=23.44 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=20.0
Q ss_pred HhhhhhHhHHHHhhhhhHHHHhhcCCcCCc
Q 032447 18 RDFKGRRAGMIKALTTDVEEFYQQCDPEKE 47 (140)
Q Consensus 18 ~Df~~RR~giirALT~Dve~Fy~~CDP~ke 47 (140)
--|+.||.||+|=- .|+.-+||-+--
T Consensus 27 vTFsKRr~GL~KKA----~ELsvLCda~Va 52 (103)
T 1k6o_B 27 TTFSKRKTGIMKKA----YELSTLTGTQVL 52 (103)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHTTCEEE
T ss_pred HhHhHhhHhHHHHH----HHHHhhhCCceE
Confidence 35899999998743 678889987654
Done!