BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032448
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana
GN=VAMP713 PE=2 SV=1
Length = 221
Score = 244 bits (624), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 114/138 (82%), Positives = 133/138 (96%), Gaps = 1/138 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNN-DSHVSYSQDRYIFHVKRTD 59
MAI+F+LVARG+VVL+E SAT+TNAS+I++QIL+K+PGN+ DSH+SYSQDRYIFHVKRTD
Sbjct: 1 MAIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTD 60
Query: 60 GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYS 119
GLTVLCMAD+TAGR IPFAFL+DIHQRFVKTYGRA+ SAQAY MNDEFSRVLSQQME+YS
Sbjct: 61 GLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQAYSMNDEFSRVLSQQMEFYS 120
Query: 120 DDPNADRINRIKGEMSQV 137
+DPNADR++RIKGEMSQV
Sbjct: 121 NDPNADRMSRIKGEMSQV 138
>sp|Q9SIQ9|VA712_ARATH Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana
GN=VAMP712 PE=3 SV=1
Length = 219
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 112/137 (81%), Positives = 129/137 (94%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
M+IL++LVARG+VVLAE S T+TNAS IA+QIL+KIPGN DSHVSYSQDRY+FHVKRTDG
Sbjct: 1 MSILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDG 60
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
LTVLCMAD+ AGRRIPF+FLEDIHQRFV+TYGRA+ SAQAY MNDEFSRVL+QQ+EYYS+
Sbjct: 61 LTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQAYAMNDEFSRVLNQQIEYYSN 120
Query: 121 DPNADRINRIKGEMSQV 137
DPNAD I+RIKGEM+QV
Sbjct: 121 DPNADTISRIKGEMNQV 137
>sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana
GN=VAMP711 PE=2 SV=2
Length = 219
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 111/137 (81%), Positives = 132/137 (96%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAIL++LVARG+VVL+E +AT+TNAS IA+QIL+K+PG+NDS+VSYSQDRY+FHVKRTDG
Sbjct: 1 MAILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDG 60
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
LTVLCMA++TAGRRIPFAFLEDIHQRFV+TYGRAV +A AY MN+EFSRVLSQQ++YYS+
Sbjct: 61 LTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHTALAYAMNEEFSRVLSQQIDYYSN 120
Query: 121 DPNADRINRIKGEMSQV 137
DPNADRINRIKGEM+QV
Sbjct: 121 DPNADRINRIKGEMNQV 137
>sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana
GN=VAMP714 PE=2 SV=1
Length = 221
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 79/138 (57%), Positives = 111/138 (80%), Gaps = 1/138 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKI-PGNNDSHVSYSQDRYIFHVKRTD 59
MAI++++VARG+VVLAE SA N A+ R+IL+K+ P +D + +SQDRYIFH+ R+D
Sbjct: 1 MAIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSD 60
Query: 60 GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYS 119
GLT LCMA+DT GRR+PF++LE+IH RF+K YG+ +A AY MNDEFSRVL QQME++S
Sbjct: 61 GLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGKVAHNAPAYAMNDEFSRVLHQQMEFFS 120
Query: 120 DDPNADRINRIKGEMSQV 137
+P+ D +NR++GE+S++
Sbjct: 121 SNPSVDTLNRVRGEVSEI 138
>sp|Q86AQ7|VAM7B_DICDI Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum
GN=vamp7B PE=3 SV=1
Length = 260
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 91/138 (65%), Gaps = 1/138 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
M I++SLVARGS VLAE ++T N I R+ILD IP N D+ +SY ++YIFH +D
Sbjct: 1 MPIIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPN-DTKMSYVYEKYIFHYLVSDT 59
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
LT LCMAD+ GRRIPF FL+D+ RF YG +A AYGMN +FSR L M++YS+
Sbjct: 60 LTYLCMADEEFGRRIPFTFLDDVKNRFKSMYGDKGKTAIAYGMNSDFSRTLENLMDHYSN 119
Query: 121 DPNADRINRIKGEMSQVE 138
D ++R E+ +V+
Sbjct: 120 TTRVDTMSRTMAEIDEVK 137
>sp|Q9JHW5|VAMP7_RAT Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7
PE=1 SV=1
Length = 220
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F FL ++ +RF TYG +A Y MN EFS VL+ Q++++S+
Sbjct: 60 IVYLCITDDDFERSRAFGFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 119
Query: 121 DPNADRINRIKGEMSQVE 138
+ + DR+ + ++ +++
Sbjct: 120 NQSLDRVTETQAQVDELK 137
>sp|Q5ZL74|VAMP7_CHICK Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7
PE=2 SV=1
Length = 220
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F FL +I +RF TYG +A Y MN EFS VL+ Q++Y+S+
Sbjct: 60 IIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKYHSE 119
Query: 121 DPNADRINRIKGEMSQVE 138
D++ + ++ +++
Sbjct: 120 SKGTDQVAETQAQVDELK 137
>sp|P70280|VAMP7_MOUSE Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=1
SV=1
Length = 220
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F+FL ++ +RF TYG +A Y MN EFS VL+ Q++++S+
Sbjct: 60 IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 119
Query: 121 DPNADRINRIKGEMSQVE 138
+ + D++ + ++ +++
Sbjct: 120 NKSLDKVMETQAQVDELK 137
>sp|P51809|VAMP7_HUMAN Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1
SV=3
Length = 220
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F FL +I +RF TYG +A Y MN EFS VL+ Q++++S+
Sbjct: 60 IVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 119
Query: 121 DPNADRINRIKGEMSQVE 138
+ D++ + ++ +++
Sbjct: 120 NKGLDKVMETQAQVDELK 137
>sp|Q17QI5|VAMP7_BOVIN Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2
SV=1
Length = 220
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F FL +I +RF TYG +A Y MN EFS VL+ Q++++S+
Sbjct: 60 IVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 119
Query: 121 DPNADRINRIKGEMSQVE 138
+ D++ + ++ +++
Sbjct: 120 NKGLDKVMETQAQVDELK 137
>sp|Q5RF94|VAMP7_PONAB Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2
SV=3
Length = 220
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++Y Y+FH D
Sbjct: 1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYPHGNYLFHYICQDR 59
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F FL +I +RF TYG +A Y MN EFS VL+ Q++++S+
Sbjct: 60 IVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 119
Query: 121 DPNADRINRIKGEMSQVE 138
+ D++ + ++ +++
Sbjct: 120 NKGLDKVMETQAQVDELK 137
>sp|Q9ZTW3|VA721_ARATH Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana
GN=VAMP721 PE=1 SV=1
Length = 219
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 85/139 (61%), Gaps = 3/139 (2%)
Query: 2 AILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGL 61
++++S VARG+V+L E + N ++IA Q L K+P +N+ +Y+ D + F+ DG
Sbjct: 5 SLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNK-FTYNCDGHTFNYLVEDGF 63
Query: 62 TVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLSAQAYGMNDEFSRVLSQQMEYYSD 120
T +A D+AGR+IP +FLE + + F K YG +AQA +N EF L + M+Y D
Sbjct: 64 TYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMD 123
Query: 121 DPNA-DRINRIKGEMSQVE 138
P+ ++ ++K ++S+V+
Sbjct: 124 HPDEISKLAKVKAQVSEVK 142
>sp|P47192|VA722_ARATH Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana
GN=VAMP722 PE=2 SV=2
Length = 221
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 85/139 (61%), Gaps = 3/139 (2%)
Query: 2 AILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGL 61
++++S VARG+V+L E + N ++IA Q L K+P +N+ +Y+ D + F+ +G
Sbjct: 5 SLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNK-FTYNCDGHTFNYLVENGF 63
Query: 62 TVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLSAQAYGMNDEFSRVLSQQMEYYSD 120
T +A D+AGR+IP AFLE + + F K YG +AQA +N EF L + M+Y D
Sbjct: 64 TYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMD 123
Query: 121 DPNA-DRINRIKGEMSQVE 138
P+ ++ ++K ++S+V+
Sbjct: 124 HPDEISKLAKVKAQVSEVK 142
>sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726 OS=Arabidopsis
thaliana GN=VAMP726 PE=3 SV=2
Length = 220
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 86/139 (61%), Gaps = 3/139 (2%)
Query: 2 AILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGL 61
++++S VARG+V+LAE + N +++A Q L K+P +N+ +Y+ D + F+ +G
Sbjct: 5 SLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNK-FTYNCDGHTFNYLADNGF 63
Query: 62 TVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYSD 120
T + ++AGR+IP AFLE + + F K YG S A+A +N EF L + M+Y +D
Sbjct: 64 TYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCAD 123
Query: 121 DPNA-DRINRIKGEMSQVE 138
P +++++K ++++V+
Sbjct: 124 HPEEISKLSKVKAQVTEVK 142
>sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana
GN=VAMP725 PE=2 SV=2
Length = 285
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 83/138 (60%), Gaps = 3/138 (2%)
Query: 3 ILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLT 62
+++S VARG+V+L E + N +A+A Q L K+P +N+ +Y+ D + F+ +G T
Sbjct: 71 LIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKF-TYNCDGHTFNYLVENGFT 129
Query: 63 VLCMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLSAQAYGMNDEFSRVLSQQMEYYSDD 121
+A ++ GR+IP AFLE + + F K YG +AQA +N EF L + M+Y D
Sbjct: 130 YCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDH 189
Query: 122 PNA-DRINRIKGEMSQVE 138
P+ ++ ++K ++++V+
Sbjct: 190 PDEISKLAKVKAQVTEVK 207
>sp|Q8VY69|VA723_ARATH Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana
GN=VAMP723 PE=2 SV=1
Length = 217
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 2 AILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGL 61
++ +S +ARG+V+L E + N +++A Q L+ +P +N+ +Y+ D + F+ +G
Sbjct: 5 SLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNK-FTYNCDGHTFNDLVENGF 63
Query: 62 TVLCMADDTAGRRIPFAFLEDIHQRFVKTY-GRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
T +A D+AGR IP AFLE + + F K Y G + QA +N EF L + M+Y D
Sbjct: 64 TYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMD 123
Query: 121 DPNA-DRINRIKGEMSQVE 138
P+ + + K ++S+V+
Sbjct: 124 HPDEISNLAKAKAQVSEVK 142
>sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana
GN=VAMP727 PE=2 SV=1
Length = 240
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 22/158 (13%)
Query: 2 AILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGL 61
+++S VA+G+VVLAE + + N S IA Q L K+P N S +YS D + F+ +G
Sbjct: 5 GLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLP-TNSSKYTYSCDGHTFNFLVDNGF 63
Query: 62 TVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQ--------------------AY 101
L +AD++ GR +PF FLE + + F K Y ++ + + AY
Sbjct: 64 VFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAY 123
Query: 102 GMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVE 138
++ EF +L + M+Y P +++++K ++++V+
Sbjct: 124 NLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVK 161
>sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana
GN=VAMP724 PE=2 SV=2
Length = 222
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 2/139 (1%)
Query: 2 AILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGL 61
+ ++S VARG+++LAE + N +IA Q L K+P +++S +Y+ D + F+ DG
Sbjct: 5 SFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGY 64
Query: 62 TVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYSD 120
+A D+ ++I AFLE + F K YG S A A +N EF V+ + M Y D
Sbjct: 65 AYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVD 124
Query: 121 DPNA-DRINRIKGEMSQVE 138
+++ ++K ++S+V+
Sbjct: 125 HAEEIEKLIKVKAQVSEVK 143
>sp|Q54NW7|VAM7A_DICDI Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum
GN=vamp7A PE=1 SV=1
Length = 216
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 3 ILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLT 62
IL++ V+ V L E N +AR+++ KIP S Y+ + + FH + L
Sbjct: 6 ILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPT--SKKIYTSENHNFHYISENDLA 63
Query: 63 VLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDP 122
LC+ + G +IP FL DI Q+F+++YG++ D F RVL ++M+YYS +P
Sbjct: 64 FLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDPFIRVLEERMKYYS-NP 122
Query: 123 NADRINRIKGEMSQVE 138
++++N + ++S+ +
Sbjct: 123 KSNKMNLVMDQVSEAK 138
>sp|Q6C880|SEC22_YARLI Protein transport protein SEC22 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=SEC22 PE=3 SV=1
Length = 213
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 3 ILFSLVARGSVVLAECSATATNASAIARQ------ILDKIPGNNDSHVSYSQDRYIFHVK 56
+L +L+ R S L ++ ++ Q + K+ N+ S Y+ H
Sbjct: 2 VLSTLIMRASDGLPLSASVDDGQENLSEQKKQCKLVTQKLSANSADRASIESGNYVIHYL 61
Query: 57 RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLS--AQAYGMNDEFSRVLSQQ 114
DG+ C+++ + R++ F++L+++ + F K++G+ L + Y EF + +
Sbjct: 62 MKDGIVYYCISESSYPRKLAFSYLDELDREFQKSHGQEALKEGVRPYKFV-EFDTFMQKT 120
Query: 115 MEYYSDDPNADRINRIKGEMSQV 137
Y D ++++ E+ V
Sbjct: 121 KRVYQDTRATHNLDKLNTELQDV 143
>sp|Q9Y7L0|SEC22_SCHPO Protein transport protein sec22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec22 PE=3 SV=2
Length = 215
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+ IL ++ ++ S Y FH +G+ LC+ + + R++ F++LE++ F
Sbjct: 35 AKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFW 94
Query: 89 KTYGRAVLSA--QAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQV 137
++G L + Y +F + + Y+ D ++++ E+ V
Sbjct: 95 NSFGEEALQPGLRPYAFV-QFDTFMQKSKRVYNTPRANDNLDKLNTELKDV 144
>sp|Q7ZV15|S22BA_DANRE Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2
SV=1
Length = 215
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 47/110 (42%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + + FH G+ L + + +++ FA+LED+ F
Sbjct: 37 AKQLCRKLNEQSPARCTLEAGKMCFHYVIEKGVCYLALCEAGFPKKLAFAYLEDLEGEFS 96
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVE 138
+ YG V S EF + + ++ Y D + I E+ V+
Sbjct: 97 EQYGAKVPSVSRPYSFIEFDTYIQKTIKSYIDSRARRNLGNINSELHDVQ 146
>sp|O08595|SC22B_CRIGR Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b
PE=1 SV=3
Length = 215
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 47/110 (42%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+H F
Sbjct: 37 AKQLFRKLNEQSPTRCTLGAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 96
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVE 138
+ +G+ V + EF + + + Y D + I E+ V+
Sbjct: 97 EQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQ 146
>sp|Q4KM74|SC22B_RAT Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b
PE=1 SV=3
Length = 215
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 47/110 (42%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+H F
Sbjct: 37 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 96
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVE 138
+ +G+ V + EF + + + Y D + I E+ V+
Sbjct: 97 EQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQ 146
>sp|Q5RAI9|SC22B_PONAB Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2
SV=3
Length = 215
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 47/110 (42%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+H F
Sbjct: 37 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 96
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVE 138
+ +G+ V + EF + + + Y D + I E+ V+
Sbjct: 97 EQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQ 146
>sp|O08547|SC22B_MOUSE Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1
SV=3
Length = 215
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 47/110 (42%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+H F
Sbjct: 37 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 96
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVE 138
+ +G+ V + EF + + + Y D + I E+ V+
Sbjct: 97 EQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQ 146
>sp|O75396|SC22B_HUMAN Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1
SV=4
Length = 215
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 46/110 (41%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + + + FA+LED+H F
Sbjct: 37 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFD 96
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVE 138
+ +G+ V + EF + + + Y D + I E+ V+
Sbjct: 97 EQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSCARRNLGSINTELQDVQ 146
>sp|Q9CQW1|YKT6_MOUSE Synaptobrevin homolog YKT6 OS=Mus musculus GN=Ykt6 PE=2 SV=1
Length = 198
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 42 SHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGR------A 94
S S + Y+ HV R+D L + +AD R+ F LE + F K R +
Sbjct: 55 SRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGS 114
Query: 95 VLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM 139
+ Q G++D S+ Y + AD +++++ E+ + ++
Sbjct: 115 PATIQYTGLDDHLSK--------YQNPREADPMSKVQAELDETKI 151
>sp|Q94AU2|SEC22_ARATH 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22
PE=2 SV=1
Length = 218
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 38 GNND-SHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVL 96
G ND S +S Y+FH + L M D + +++ F +LED+ F + G +
Sbjct: 46 GQNDASRMSVETGPYVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIE 105
Query: 97 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQV 137
+A +F + + + Y D I ++ E+ +V
Sbjct: 106 TAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 146
>sp|Q5ZJW4|SC22B_CHICK Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2
SV=1
Length = 215
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 46/110 (41%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+ F
Sbjct: 37 AKQLFRKLNEQSPTRCTLEAGAMAFHYIIEKGVCYLVLCEAAFPKKLAFAYLEDLQSEFD 96
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVE 138
+ +G+ V + EF + + + Y D + I E+ V+
Sbjct: 97 EQHGKKVPTVSRPYSFIEFDTYIQKTKKLYIDSRARRNLGSINTELQDVQ 146
>sp|Q9ZRD6|YKT61_ARATH VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 28 IARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRF 87
+ R + + P + V + + Y H +GL + DD R F+ L + +
Sbjct: 45 VGRTVASRTPPSQRQSVQH--EEYKVHAYNRNGLCAVGFMDDHYPVRSAFSLLNQVLDEY 102
Query: 88 VKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM 139
K++G + SA+ N + L++ + + D AD++ +I+ E+ + ++
Sbjct: 103 QKSFGESWRSAKE-DSNQPWP-YLTEALNKFQDPAEADKLLKIQRELDETKI 152
>sp|Q6P7L4|SC22B_XENTR Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b
PE=2 SV=1
Length = 215
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 47/110 (42%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+ F
Sbjct: 37 AKQLFRKLNEQSPTRCTLEAGAMTFHYLIEKGVCYLVLCEAAFPKKLAFAYLEDLFSEFD 96
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVE 138
+ +G+ V + EF + + + Y D ++ + E+ V+
Sbjct: 97 EQHGKKVPTVSRPYSFIEFDNYIQKTKKSYIDSRARRNLSSVNTELQDVQ 146
>sp|Q7SXP0|S22BB_DANRE Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2
SV=1
Length = 215
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 47/110 (42%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+ F
Sbjct: 37 AKQLFRKLNEQSPNRCTLEAGSMSFHYVIEKGVCYLVLCEAGFPKKLAFAYLEDLQAEFH 96
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVE 138
+ +G+ V + EF + + + Y D ++ I E+ V+
Sbjct: 97 EQHGKKVPTVSRPYSFIEFDTYIQKTKKSYIDSRARRNLSNINTELQDVQ 146
>sp|Q9FRH3|CAP13_ARATH Putative clathrin assembly protein At1g25240 OS=Arabidopsis
thaliana GN=At1g25240 PE=3 SV=1
Length = 376
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 73 RRIPFAF--LEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRI 130
RR+PF D H R KT+G + D++S LS Q+ P D +N+
Sbjct: 109 RRLPFDLSDFSDGHSRPSKTWGFNAFIRAYFSFLDQYSFFLSDQIRRRHKKPQLDSVNQ- 167
Query: 131 KGEMSQVE 138
E+ ++E
Sbjct: 168 --ELERIE 173
>sp|Q3T000|YKT6_BOVIN Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 PE=2 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 42 SHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQA 100
S S + Y+ HV R D L + +AD R+ F LE + F K R
Sbjct: 55 SRASVKEQEYLCHVYVRNDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPT-- 112
Query: 101 YGMNDEFSRV-LSQQMEYYSDDPNADRINRIKGEMSQVEM 139
G D L Q+ Y + AD + +++ E+ + ++
Sbjct: 113 -GSPDTIRYSGLDSQLSRYQNPREADPMTKVQAELDETKI 151
>sp|Q9LVM9|YKT62_ARATH VAMP-like protein YKT62 OS=Arabidopsis thaliana GN=YKT62 PE=2 SV=1
Length = 199
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 28 IARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRF 87
IAR + + P V + + Y H +GL + DD R F+ L + +
Sbjct: 47 IARTVARRTPPGQRQSVKHEE--YKVHAYNINGLCAVGFMDDHYPVRSAFSLLNQVLDVY 104
Query: 88 VKTYG---RAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM 139
K YG R S+Q + L + + + D AD++ +I+ E+ + ++
Sbjct: 105 QKDYGDTWRFENSSQPWPY-------LKEASDKFRDPAEADKLLKIQRELDETKI 152
>sp|O48790|CCB14_ARATH Cyclin-B1-4 OS=Arabidopsis thaliana GN=CYCB1-4 PE=2 SV=1
Length = 387
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 13 VVLAECSATATNASAIARQILDKIPGNNDS---HVSYSQDRYIFHVK 56
VVL S A +A ARQIL K P ++ H YS+D + H K
Sbjct: 298 VVLNRPSMLAASAVYAARQILKKTPFWTETLKHHTGYSEDEIMEHAK 344
>sp|Q8SRQ8|SYDC_ENCCU Probable aspartate--tRNA ligase, cytoplasmic OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU06_0790 PE=3 SV=1
Length = 473
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 50 RYIFHVKRTDGLTVLCMA----DDTAGRRIP-FAFLEDI-HQRFVKTYGRAV 95
+YIF V R G TV CM D + G +P F+ L + H+ +++ GR V
Sbjct: 42 KYIFIVLRDGGCTVQCMCEKPTDGSGGLTMPEFSSLRKVTHESYIEIRGRVV 93
>sp|Q97EB0|TILS_CLOAB tRNA(Ile)-lysidine synthase OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=tilS PE=3 SV=1
Length = 461
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 53 FHVKRTDGLTVLC---MADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSR 109
F+VKR D + ++ + AGR I +AF E++ +RF +A A A+ ND+
Sbjct: 81 FYVKRVDVNKIAHEKKISSEMAGREIRYAFFEEVKERF-----KANKIAIAHNANDQAET 135
Query: 110 VL 111
++
Sbjct: 136 IM 137
>sp|Q6CJA0|SEC22_KLULA Protein transport protein SEC22 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SEC22 PE=3 SV=1
Length = 214
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 54 HVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMN-DEFSRVLS 112
H R + + + +A+ R + F++L DI Q F +YG + + F L
Sbjct: 59 HYIRLNTVVYIVVAERNYPRNLAFSYLADIQQEFEHSYGGQLSKSNVRPYEFVSFDNFLQ 118
Query: 113 QQMEYYSDDPNADRINRIKGEMSQV 137
+ + Y+D R++G M Q+
Sbjct: 119 KTKKVYND-------KRVQGNMDQL 136
>sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1
Length = 1612
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 7 LVARGSVVLAECSATATNASAI-------ARQILDKIPGNNDSHVSYSQ--DRYIFHVKR 57
+VA G V +C AT AI + P + S S SQ D I +V+R
Sbjct: 322 VVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQR 381
Query: 58 TDGLTVLCMADDTAGRRIPFAFLE 81
+D +C + AG I A+LE
Sbjct: 382 SDVGYYICQTLNVAGSIITKAYLE 405
>sp|Q5EGY4|YKT6_RAT Synaptobrevin homolog YKT6 OS=Rattus norvegicus GN=Ykt6 PE=1 SV=1
Length = 198
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
Query: 42 SHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGR------A 94
S S + Y+ HV R+D L + +AD R+ F LE + F K R +
Sbjct: 55 SRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGS 114
Query: 95 VLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM 139
+ ++ SR Y + AD +++++ E+ + ++
Sbjct: 115 PATIHYTALDGHLSR--------YQNPREADPMSKVQAELDETKI 151
>sp|Q9Y6N7|ROBO1_HUMAN Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1 SV=1
Length = 1651
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 7 LVARGSVVLAECSATATNASAI-------ARQILDKIPGNNDSHVSYSQ--DRYIFHVKR 57
+VA G V +C AT AI + P + S S SQ D I +V+R
Sbjct: 361 VVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQR 420
Query: 58 TDGLTVLCMADDTAGRRIPFAFLE 81
+D +C + AG I A+LE
Sbjct: 421 SDVGYYICQTLNVAGSIITKAYLE 444
>sp|Q74ZD2|SEC22_ASHGO Protein transport protein SEC22 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC22
PE=3 SV=2
Length = 214
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 51 YIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVL--SAQAYGMNDEFS 108
Y H R + + + + R + FA+L D+ F +YG + S + Y F
Sbjct: 56 YEMHYVRQQSVVYIVIVERGYPRNLAFAYLADVRHEFEHSYGNEYVKPSVRPYAFV-SFD 114
Query: 109 RVLSQQMEYYSDDPNADRINRIKGEMSQV 137
L + + Y+D R++G + Q+
Sbjct: 115 NFLQKTKKIYND-------KRVQGNLDQL 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,570,516
Number of Sequences: 539616
Number of extensions: 1673672
Number of successful extensions: 4035
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3981
Number of HSP's gapped (non-prelim): 47
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)