Query 032448
Match_columns 140
No_of_seqs 104 out of 744
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 23:25:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 2.1E-46 7.2E-51 265.4 15.1 138 1-139 2-139 (189)
2 4afi_A AP-3 complex subunit de 100.0 7.3E-43 2.5E-47 243.3 15.6 119 1-120 54-172 (173)
3 2nut_C Vesicle-trafficking pro 100.0 1.2E-38 4.1E-43 227.0 14.4 136 3-139 3-148 (196)
4 2vx8_A Nucleoporin-like protei 100.0 8.8E-38 3E-42 217.1 12.7 121 1-122 44-164 (169)
5 3bw6_A Synaptobrevin homolog Y 100.0 6.7E-32 2.3E-36 183.5 12.7 122 1-126 5-144 (144)
6 3kyq_A YKT6, synaptobrevin hom 100.0 4.7E-29 1.6E-33 177.4 11.5 132 1-139 2-152 (199)
7 2fh5_A Signal recognition part 98.1 1.8E-05 6E-10 55.1 8.4 110 3-115 12-134 (185)
8 2fz0_A R-snare NYV1P, V-snare 94.7 0.31 1.1E-05 31.8 8.2 60 26-85 48-114 (149)
9 3tjz_C Coatomer subunit zeta-1 94.5 0.55 1.9E-05 31.3 9.5 80 10-91 22-105 (153)
10 2vgl_S AP-2 complex subunit si 93.9 0.61 2.1E-05 30.5 8.7 49 44-92 48-96 (142)
11 1w63_Q Adapter-related protein 93.5 1.1 3.7E-05 29.9 10.1 49 44-92 48-96 (158)
12 2j3w_A Sedlin, trafficking pro 93.5 1 3.4E-05 29.5 10.9 117 1-119 3-140 (142)
13 1gl2_A Endobrevin; membrane pr 92.7 0.026 9.1E-07 32.3 0.5 20 120-139 4-23 (65)
14 1w63_M Adaptor-related protein 91.1 0.74 2.5E-05 35.6 7.2 91 1-92 1-96 (423)
15 1l4a_A Synaptobrevin; snare, s 89.8 0.11 3.9E-06 30.9 1.2 20 120-139 10-29 (80)
16 2vgl_M AP-2 complex subunit MU 89.5 6.1 0.00021 30.5 11.4 49 44-92 46-94 (435)
17 2j3t_C Trafficking protein par 88.7 3.6 0.00012 27.0 11.3 115 1-118 1-137 (145)
18 2j3t_D Trafficking protein par 87.3 6 0.00021 27.9 10.7 89 30-121 119-212 (219)
19 1sfc_A VAMP 2, protein (synapt 84.0 0.41 1.4E-05 29.5 1.4 19 121-139 26-44 (96)
20 3cue_C Transport protein parti 83.0 7.7 0.00026 25.8 7.5 86 30-118 52-156 (159)
21 3cue_A Transport protein parti 82.4 11 0.00037 26.6 9.4 77 41-118 117-218 (219)
22 3fie_C Fragment of vesicle-ass 80.4 0.043 1.5E-06 28.0 -3.4 18 122-139 6-23 (38)
23 3zym_A Phosphatidylinositol-bi 79.8 0.51 1.7E-05 35.2 0.8 38 102-139 242-294 (310)
24 2kog_A Vesicle-associated memb 79.7 0.37 1.3E-05 30.9 0.0 19 121-139 29-47 (119)
25 2xus_A Breast cancer metastasi 59.8 9.5 0.00033 20.3 2.8 16 124-139 31-46 (49)
26 4a4y_A Protein MXIG; protein b 52.4 29 0.001 21.4 4.5 42 3-57 86-127 (146)
27 2kmf_A Photosystem II 11 kDa p 43.1 31 0.001 21.8 3.6 65 73-138 40-108 (115)
28 2y6x_A PSB27, photosystem II 1 43.0 44 0.0015 21.0 4.3 64 74-138 37-104 (113)
29 3r45_C Holliday junction recog 39.0 14 0.00047 21.4 1.4 21 105-125 28-48 (81)
30 1mg4_A Doublecortin, doublecor 37.8 13 0.00045 23.3 1.4 56 21-77 39-101 (113)
31 3lay_A Zinc resistance-associa 33.8 47 0.0016 22.4 3.7 28 109-138 99-126 (175)
32 2kfe_A Meucin-24; alpha-helix, 27.0 24 0.00081 16.1 0.9 12 127-138 7-18 (26)
33 4ftx_A Protein SLM4; EGO compl 26.6 1.1E+02 0.0038 20.3 4.4 42 51-92 106-158 (170)
34 2dnf_A Doublecortin domain-con 22.0 59 0.002 20.0 2.3 54 23-77 40-96 (108)
35 1bm4_A Protein (moloney murine 21.2 78 0.0027 15.1 2.1 17 73-89 12-28 (32)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=2.1e-46 Score=265.44 Aligned_cols=138 Identities=36% Similarity=0.641 Sum_probs=127.3
Q ss_pred CceEEEEEEeCCeeEeeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHH
Q 032448 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (140)
Q Consensus 1 M~I~Ya~Var~~~iL~e~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL 80 (140)
|||+|||||||++|||||+..+|||..+++++|+++|+ .++|++++.|+|+|||++++|++|+||||++||+++||.||
T Consensus 2 M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~-~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 2 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 99999999999999999999999999999999999996 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccchhhHHHHHHHHHHhcCCchhhHHHHHHhhhhhhcc
Q 032448 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM 139 (140)
Q Consensus 81 ~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~l~~~l~evk~ 139 (140)
++|+++|...|+..+.++.|++++.+|.+.|+++|++|+++++.|+|.+++.+|+||++
T Consensus 81 ~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~ 139 (189)
T 4b93_A 81 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKG 139 (189)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTT
T ss_pred HHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 99999999999988888999999999999999999999999999999999999999985
No 2
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.3e-43 Score=243.31 Aligned_cols=119 Identities=40% Similarity=0.697 Sum_probs=116.1
Q ss_pred CceEEEEEEeCCeeEeeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHH
Q 032448 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (140)
Q Consensus 1 M~I~Ya~Var~~~iL~e~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL 80 (140)
|+|+|||||||++|||||+..+|||..+++++|+++|+ .++|++++.|+|+|||++++|++|+||||+++|+++||+||
T Consensus 54 M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~-~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 54 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred ccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 99999999999999999999999999999999999996 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccchhhHHHHHHHHHHhcC
Q 032448 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120 (140)
Q Consensus 81 ~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~ 120 (140)
++|+++|.++|+.+|.+++||+|+++|+++|+++|++||+
T Consensus 133 edI~~eF~~~yg~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999986
No 3
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=1.2e-38 Score=226.97 Aligned_cols=136 Identities=21% Similarity=0.428 Sum_probs=110.0
Q ss_pred eEEEEEEeC--CeeEeeecCCC---CC----HHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCc
Q 032448 3 ILFSLVARG--SVVLAECSATA---TN----ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGR 73 (140)
Q Consensus 3 I~Ya~Var~--~~iL~e~~~~~---~~----~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~ 73 (140)
|+|+||||+ ++|||++++.+ |+ |..+++.++++++++.++|.+++.|+|.|||++++|++|+||||++||+
T Consensus 3 i~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp~ 82 (196)
T 2nut_C 3 VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPK 82 (196)
T ss_dssp CCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred eEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcch
Confidence 899999999 89999998743 44 8999999999999767999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhccccccc-cCCCccchhhHHHHHHHHHHhcCCchhhHHHHHHhhhhhhcc
Q 032448 74 RIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM 139 (140)
Q Consensus 74 ~~af~fL~~i~~~F~~~~~~~~~~-~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~l~~~l~evk~ 139 (140)
++||.||++|+++|...|+..|.+ +.||++. +|++.|+++|++|+||++.|+|.+++.+|+||+.
T Consensus 83 r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~ 148 (196)
T 2nut_C 83 KLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFI-EFDTFIQKTKKLYIDSRARRNLGSINTELQDVQR 148 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTG-GGHHHHHHHHTTTSCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHhccchhccccCCCchH-HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHH
Confidence 999999999999999999977755 6899996 9999999999999999999999999999999985
No 4
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=100.00 E-value=8.8e-38 Score=217.06 Aligned_cols=121 Identities=40% Similarity=0.689 Sum_probs=109.6
Q ss_pred CceEEEEEEeCCeeEeeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHH
Q 032448 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (140)
Q Consensus 1 M~I~Ya~Var~~~iL~e~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL 80 (140)
|+|+|+||+||++|||||++.++||..+++.+|+++++ .++|.+++.|+|+|||+++||++|+||||++||+++||.||
T Consensus 44 M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~-~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCS-SCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCC-CCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 99999999999999999999899999999999999997 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccchhhHHHHHHHHHHhcCCc
Q 032448 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDP 122 (140)
Q Consensus 81 ~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~ 122 (140)
++|+++|..+|+..|.++.+|+++++|++.|++.|++|+++.
T Consensus 123 edI~~eF~~~y~~~~~~a~pysf~~eF~~~Lk~~~~~~~~~~ 164 (169)
T 2vx8_A 123 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENH 164 (169)
T ss_dssp HHHHHHHHHHHTTGGGTCCTTTTHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHhhhhhhccCCcchhHHHHHHHHHHHHHhcCcc
Confidence 999999999999888888899998899999999999998753
No 5
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.98 E-value=6.7e-32 Score=183.47 Aligned_cols=122 Identities=19% Similarity=0.288 Sum_probs=102.6
Q ss_pred CceEEEEEEeC----CeeEeeecCCC----------CCH-HHHHHHHhccCCCCCCCceEEeeCCeEEEEE-EeCCeEEE
Q 032448 1 MAILFSLVARG----SVVLAECSATA----------TNA-SAIARQILDKIPGNNDSHVSYSQDRYIFHVK-RTDGLTVL 64 (140)
Q Consensus 1 M~I~Ya~Var~----~~iL~e~~~~~----------~~~-~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l-~~~~~~~~ 64 (140)
|.|+|++|+|+ .++|+++++.+ ++| ..+++++++|+++ ++|++++.|+|+|||+ +++|++||
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~--~~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA--GQRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT--TEEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC--CceEEEEeCCEEEEEEEecCCEEEE
Confidence 78999999999 68999999876 555 7899999999997 7999999999999999 88999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhcccc-ccc-cCCCccchhhHHHHHHHHHHhcCCchhhH
Q 032448 65 CMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLS-AQAYGMNDEFSRVLSQQMEYYSDDPNADR 126 (140)
Q Consensus 65 citd~~~~~~~af~fL~~i~~~F~~~~~~~-~~~-~~~~~~~~~F~~~l~~~~~~yn~~~~~dk 126 (140)
||||++||+|+||.||++|+++|.++|+.. |.+ ..+++ .-.| +.|++.|++|+||+++|+
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kYqdp~~aD~ 144 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKYQDPSQADA 144 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHTSCC-----
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHhCchhhcCC
Confidence 999999999999999999999999999966 776 44221 2244 789999999999988885
No 6
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.96 E-value=4.7e-29 Score=177.35 Aligned_cols=132 Identities=20% Similarity=0.342 Sum_probs=111.8
Q ss_pred CceEEEEEEeCC----eeEeeecCCC----------CCHH-HHHHHHhccCCCCCCCceEEeeCCeEEE-EEEeCCeEEE
Q 032448 1 MAILFSLVARGS----VVLAECSATA----------TNAS-AIARQILDKIPGNNDSHVSYSQDRYIFH-VKRTDGLTVL 64 (140)
Q Consensus 1 M~I~Ya~Var~~----~iL~e~~~~~----------~~~~-~~~~~vl~~i~~~~~~k~~~~~~~~~~h-~l~~~~~~~~ 64 (140)
|.|++.+|.+.+ ++|+...+.+ ++|. .+++.+++++++ ++|.+++.|+|.|| |+.++|++|+
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEE
Confidence 789999999853 6777665543 2444 566799999987 88999999999999 9999999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhccc-cccc--cCCCccchhhHHHHHHHHHHhcCCchhhHHHHHHhhhhhhcc
Q 032448 65 CMADDTAGRRIPFAFLEDIHQRFVKTYGR-AVLS--AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM 139 (140)
Q Consensus 65 citd~~~~~~~af~fL~~i~~~F~~~~~~-~~~~--~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~l~~~l~evk~ 139 (140)
||||++||+++||.||++|+++|...|+. .|.+ ..+++ | +.|+++|++|+||+++|+|.+++.+|+||+.
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~----f-~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~ 152 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH----Y-TALDGHLSRYQNPREADPMSKVQAELDETKI 152 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCC----C-CTHHHHHHHTTSGGGCCCCHHHHHHHHTCCC
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccccc----c-HHHHHHHHHhCCchhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999984 5543 34443 4 6788999999998889999999999999985
No 7
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=98.10 E-value=1.8e-05 Score=55.07 Aligned_cols=110 Identities=16% Similarity=0.305 Sum_probs=74.7
Q ss_pred eEEEEEEeCCeeEeeecCCCC----CHHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeC--CeEEEEEecCCCCcccH
Q 032448 3 ILFSLVARGSVVLAECSATAT----NASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTD--GLTVLCMADDTAGRRIP 76 (140)
Q Consensus 3 I~Ya~Var~~~iL~e~~~~~~----~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~--~~~~~citd~~~~~~~a 76 (140)
=+.+.+.+|++||+.|+.... ....+++.+|-.=. .+..+++.++|...|..+| |++|++|=.+-.+-.-.
T Consensus 12 D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER---~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Yi 88 (185)
T 2fh5_A 12 DFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYV 88 (185)
T ss_dssp SEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHH
T ss_pred eEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccc---cCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHH
Confidence 367899999999999954322 35788888874422 2234688999999988775 89999997666555556
Q ss_pred HHHHHHHHHHHHhhcccccc--c-c----CCCccchhhHHHHHHHH
Q 032448 77 FAFLEDIHQRFVKTYGRAVL--S-A----QAYGMNDEFSRVLSQQM 115 (140)
Q Consensus 77 f~fL~~i~~~F~~~~~~~~~--~-~----~~~~~~~~F~~~l~~~~ 115 (140)
=.||++|+..|...|+.... . . ....++..|...+++.-
T Consensus 89 D~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e 134 (185)
T 2fh5_A 89 DKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAE 134 (185)
T ss_dssp HHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHH
Confidence 68999999999999964421 1 1 22356667777666653
No 8
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.31 Score=31.84 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=48.9
Q ss_pred HHHHHHHhccCCCCCCCceEEe----eCCeEEEEEE---eCCeEEEEEecCCCCcccHHHHHHHHHH
Q 032448 26 SAIARQILDKIPGNNDSHVSYS----QDRYIFHVKR---TDGLTVLCMADDTAGRRIPFAFLEDIHQ 85 (140)
Q Consensus 26 ~~~~~~vl~~i~~~~~~k~~~~----~~~~~~h~l~---~~~~~~~citd~~~~~~~af~fL~~i~~ 85 (140)
+.+..-||+++-|-.++|.+=. .+||-++|.. +.|.+++|.|..+.|+-.+-..|.+++.
T Consensus 48 ~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 48 NLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 4556677888887666666542 4899988887 3678999999999999999999999976
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=94.45 E-value=0.55 Score=31.31 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=56.7
Q ss_pred eCCeeEeeecCCC-CCH---HHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHHHHHHH
Q 032448 10 RGSVVLAECSATA-TNA---SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQ 85 (140)
Q Consensus 10 r~~~iL~e~~~~~-~~~---~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL~~i~~ 85 (140)
+|.++|+-|-... .+. ..+.+.+.+++.. .+ .-.+..+++.+.|..-.++.|+++++.+...-..+.||..+-+
T Consensus 22 ~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r-~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~ile~L~~~ve 99 (153)
T 3tjz_C 22 DGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHR-TD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFD 99 (153)
T ss_dssp TSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSS-CC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHHHHHHHHHHH
Confidence 4457777664321 222 2233344444432 22 2456789999999999999999999999999999999999888
Q ss_pred HHHhhc
Q 032448 86 RFVKTY 91 (140)
Q Consensus 86 ~F~~~~ 91 (140)
-+..-+
T Consensus 100 ~l~~yf 105 (153)
T 3tjz_C 100 SLSQML 105 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887777
No 10
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=93.88 E-value=0.61 Score=30.46 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=42.6
Q ss_pred eEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHHHHHHHHHHhhcc
Q 032448 44 VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (140)
Q Consensus 44 ~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL~~i~~~F~~~~~ 92 (140)
-.+..+++.|-|..-+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus 48 ~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3457789999898889999999999999999999999998888776665
No 11
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.49 E-value=1.1 Score=29.92 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=41.8
Q ss_pred eEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHHHHHHHHHHhhcc
Q 032448 44 VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (140)
Q Consensus 44 ~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL~~i~~~F~~~~~ 92 (140)
-.+..+++.|-|..-+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus 48 ~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3457789999999999999999999999999999999988877766555
No 12
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=93.48 E-value=1 Score=29.55 Aligned_cols=117 Identities=9% Similarity=0.083 Sum_probs=67.4
Q ss_pred Cc-eEE-EEEEeCCeeEeeecCCCC-------C----HH---HHHHHHhccCCCCCCC---ceEEeeCCeEEE-EEEeCC
Q 032448 1 MA-ILF-SLVARGSVVLAECSATAT-------N----AS---AIARQILDKIPGNNDS---HVSYSQDRYIFH-VKRTDG 60 (140)
Q Consensus 1 M~-I~Y-a~Var~~~iL~e~~~~~~-------~----~~---~~~~~vl~~i~~~~~~---k~~~~~~~~~~h-~l~~~~ 60 (140)
|+ |.+ +.|.|.+.+|.+..-... + +. --+..+++++.+..++ +.+...++|..| |....|
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence 66 555 556666788886642211 1 11 1122233333322222 455666788877 666689
Q ss_pred eEEEEEecCCCCcccHHHHHHHHHHHHHhhccccccc-cCCCccchhhHHHHHHHHHHhc
Q 032448 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYS 119 (140)
Q Consensus 61 ~~~~citd~~~~~~~af~fL~~i~~~F~~~~~~~~~~-~~~~~~~~~F~~~l~~~~~~yn 119 (140)
+-|+.++|.. .....-.||.+|..-|....-+-.-. ..|.. ...|+..++++++.|-
T Consensus 83 ~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~-s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 83 MRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIR-SSAFDRKVQFLGKKHL 140 (142)
T ss_dssp CEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCC-CHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-cHHHHHHHHHHHHHhc
Confidence 9999999873 23346688888887666532221111 11221 3589999999998884
No 13
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=92.72 E-value=0.026 Score=32.31 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=13.1
Q ss_pred CCchhhHHHHHHhhhhhhcc
Q 032448 120 DDPNADRINRIKGEMSQVEM 139 (140)
Q Consensus 120 ~~~~~dkl~~l~~~l~evk~ 139 (140)
+|++.|+|.+|+.+|+||+.
T Consensus 4 ~~~~~d~l~~vq~~l~evk~ 23 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKN 23 (65)
T ss_dssp ------CHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHH
Confidence 56789999999999999974
No 14
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.13 E-value=0.74 Score=35.58 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=58.6
Q ss_pred CceEEEEEEeC-CeeEeeec-C--CCCC-HHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCccc
Q 032448 1 MAILFSLVARG-SVVLAECS-A--TATN-ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRI 75 (140)
Q Consensus 1 M~I~Ya~Var~-~~iL~e~~-~--~~~~-~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~ 75 (140)
|.|...+|.-. +.+|.+.. . .... .+..-+.++.+... ...--.+..+++.|.|..-+++.|+|+++.+...-.
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~-~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEE-GMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHT-SCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 55666666533 44444332 1 1112 33444455543220 122235578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 032448 76 PFAFLEDIHQRFVKTYG 92 (140)
Q Consensus 76 af~fL~~i~~~F~~~~~ 92 (140)
.+.||..+.+-+..-++
T Consensus 80 ~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999998888776665
No 15
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=89.83 E-value=0.11 Score=30.87 Aligned_cols=20 Identities=10% Similarity=0.224 Sum_probs=17.7
Q ss_pred CCchhhHHHHHHhhhhhhcc
Q 032448 120 DDPNADRINRIKGEMSQVEM 139 (140)
Q Consensus 120 ~~~~~dkl~~l~~~l~evk~ 139 (140)
++++.|+|.+|+.+|+||+.
T Consensus 10 ~~~~~d~l~~vq~el~ev~~ 29 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVD 29 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHH
Confidence 56789999999999999974
No 16
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=89.46 E-value=6.1 Score=30.53 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=42.4
Q ss_pred eEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHHHHHHHHHHhhcc
Q 032448 44 VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (140)
Q Consensus 44 ~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL~~i~~~F~~~~~ 92 (140)
-.+..+++.|.|..-+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999998887776665
No 17
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=88.71 E-value=3.6 Score=26.96 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=67.3
Q ss_pred CceEEEEE-EeCCeeEeeec--CCC--C----C-HH------HHHHHHhccCCCC--CCCceEEeeCCeEEE-EEEeCCe
Q 032448 1 MAILFSLV-ARGSVVLAECS--ATA--T----N-AS------AIARQILDKIPGN--NDSHVSYSQDRYIFH-VKRTDGL 61 (140)
Q Consensus 1 M~I~Ya~V-ar~~~iL~e~~--~~~--~----~-~~------~~~~~vl~~i~~~--~~~k~~~~~~~~~~h-~l~~~~~ 61 (140)
|.|++..| .|.+.+|.+.. ... + + .. --++.+.+++.|. .....+++.++|..| |..-.|+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 66666554 45567777553 211 1 1 10 1123444555542 245677888999888 5556899
Q ss_pred EEEEEecCCCCcccHHHHHHHHH-HHHHhhc-cccccc-cCCCccchhhHHHHHHHHHHh
Q 032448 62 TVLCMADDTAGRRIPFAFLEDIH-QRFVKTY-GRAVLS-AQAYGMNDEFSRVLSQQMEYY 118 (140)
Q Consensus 62 ~~~citd~~~~~~~af~fL~~i~-~~F~~~~-~~~~~~-~~~~~~~~~F~~~l~~~~~~y 118 (140)
-|+.+||...+ -.-.||.+|. .-|...- .+-.-. ..|.. ...|+..++++++.+
T Consensus 81 KFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~-s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 81 KVVMNTDLGVG--PIRDVLHHIYSALYVEFVVKNPLCPLGQTVQ-SELFRSRLDSYVRSL 137 (145)
T ss_dssp EEEEEECTTCC--CCHHHHHHHHHTTHHHHTTTCTTSCTTSCCC-CHHHHHHHHHHHTTS
T ss_pred EEEEEecCCcc--hHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-cHHHHHHHHHHHHhC
Confidence 99999998744 4668888888 5665421 121111 12222 357999999988765
No 18
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=87.34 E-value=6 Score=27.93 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=59.7
Q ss_pred HHHhccCCCC--CCCceEEeeCCeEEE-EEEeCCeEEEEEecCCCCcccHHHHHHHHHHHHHhhc-cccccc-cCCCccc
Q 032448 30 RQILDKIPGN--NDSHVSYSQDRYIFH-VKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTY-GRAVLS-AQAYGMN 104 (140)
Q Consensus 30 ~~vl~~i~~~--~~~k~~~~~~~~~~h-~l~~~~~~~~citd~~~~~~~af~fL~~i~~~F~~~~-~~~~~~-~~~~~~~ 104 (140)
..+.+++.|. ...-.+++.+.|..| |....|+-|+.+||.. ....-.||.+|..-|...- .+-... ..+.. .
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~-s 195 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR-C 195 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-C
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-h
Confidence 4455666652 234567788999988 5556899999999986 4467788889887666531 222111 12222 3
Q ss_pred hhhHHHHHHHHHHhcCC
Q 032448 105 DEFSRVLSQQMEYYSDD 121 (140)
Q Consensus 105 ~~F~~~l~~~~~~yn~~ 121 (140)
..|+..++++++.++..
T Consensus 196 ~~Fd~~v~~l~~~~~~~ 212 (219)
T 2j3t_D 196 ELFDQNLKLALEVAEKA 212 (219)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 68999999999998764
No 19
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=84.03 E-value=0.41 Score=29.48 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=16.7
Q ss_pred CchhhHHHHHHhhhhhhcc
Q 032448 121 DPNADRINRIKGEMSQVEM 139 (140)
Q Consensus 121 ~~~~dkl~~l~~~l~evk~ 139 (140)
+++.|+|.+|+.+|+||+.
T Consensus 26 ~~~~d~l~~vq~eldeVk~ 44 (96)
T 1sfc_A 26 LTSNRRLQQTQAQVDEVVD 44 (96)
T ss_dssp CCCSHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHH
Confidence 4678999999999999974
No 20
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=82.95 E-value=7.7 Score=25.83 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=53.7
Q ss_pred HHHhccCCCCC--CCceEEeeCCeEEEEE-EeCCeEEEEEecCCCCcccHHHHHHHHHH-HHHhhc-ccc-----cccc-
Q 032448 30 RQILDKIPGNN--DSHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQ-RFVKTY-GRA-----VLSA- 98 (140)
Q Consensus 30 ~~vl~~i~~~~--~~k~~~~~~~~~~h~l-~~~~~~~~citd~~~~~~~af~fL~~i~~-~F~~~~-~~~-----~~~~- 98 (140)
+.+.+++.|.. +.-..++.+.|..|+. ...|+-|+++||...+ -.-.+|.+|.. -|..-. .+- ....
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~ 129 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVKYVSNNLLSPYDFAENE 129 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSC
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 55566666532 4556677789988844 5579999999997643 45577888886 555411 111 1000
Q ss_pred --------CCCccchhhHHHHHHHHHHh
Q 032448 99 --------QAYGMNDEFSRVLSQQMEYY 118 (140)
Q Consensus 99 --------~~~~~~~~F~~~l~~~~~~y 118 (140)
.+-. ...|+..|+++++.+
T Consensus 130 ~~~~~~~~~pI~-s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 130 NEMRGQGTRKIT-NRNFISVLESFLAPM 156 (159)
T ss_dssp TTTTTSCCCCCC-CHHHHHHHHHHTSCC
T ss_pred cccccccCcCcc-cHHHHHHHHHHHHhc
Confidence 1221 357888888887765
No 21
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=82.42 E-value=11 Score=26.64 Aligned_cols=77 Identities=10% Similarity=0.179 Sum_probs=50.1
Q ss_pred CCceEEeeCCeEEE-EEEeCCeEEEEEecCCCCc----------------------ccHHHHHHHHHHHHHhhc-cccc-
Q 032448 41 DSHVSYSQDRYIFH-VKRTDGLTVLCMADDTAGR----------------------RIPFAFLEDIHQRFVKTY-GRAV- 95 (140)
Q Consensus 41 ~~k~~~~~~~~~~h-~l~~~~~~~~citd~~~~~----------------------~~af~fL~~i~~~F~~~~-~~~~- 95 (140)
.+-..+..+.|..| |....|+-|++++|...+. ...-.||.+|...|.... .+-.
T Consensus 117 ~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY 196 (219)
T 3cue_A 117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSY 196 (219)
T ss_dssp SSCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred CceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45677788888887 5556899999999987633 345688888887776522 1111
Q ss_pred cccCCCccchhhHHHHHHHHHHh
Q 032448 96 LSAQAYGMNDEFSRVLSQQMEYY 118 (140)
Q Consensus 96 ~~~~~~~~~~~F~~~l~~~~~~y 118 (140)
.-..+.. ...|+..++.+++.+
T Consensus 197 ~~~~pI~-S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 197 SMEMPIR-SNLFDEKVKKMVENL 218 (219)
T ss_dssp CTTSCCC-CHHHHHHHHHHHHHH
T ss_pred CCCCccc-cHHHHHHHHHHHHhc
Confidence 1111221 257888888888766
No 22
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=80.42 E-value=0.043 Score=28.02 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=15.7
Q ss_pred chhhHHHHHHhhhhhhcc
Q 032448 122 PNADRINRIKGEMSQVEM 139 (140)
Q Consensus 122 ~~~dkl~~l~~~l~evk~ 139 (140)
+..|++.+++.+|+||+.
T Consensus 6 ~~~d~l~~vq~qvdeVk~ 23 (38)
T 3fie_C 6 TSNRRLQQTQAQVDEVVD 23 (38)
T ss_dssp CCCCSSCEESCCCCCSCC
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 457999999999999985
No 23
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=79.79 E-value=0.51 Score=35.17 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=23.9
Q ss_pred ccchhhHHHHHHHHHHhcC---------------CchhhHHHHHHhhhhhhcc
Q 032448 102 GMNDEFSRVLSQQMEYYSD---------------DPNADRINRIKGEMSQVEM 139 (140)
Q Consensus 102 ~~~~~F~~~l~~~~~~yn~---------------~~~~dkl~~l~~~l~evk~ 139 (140)
.+.+.|..+..++.+.|.. .+..|++.++|+||+||++
T Consensus 242 ~iykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~ 294 (310)
T 3zym_A 242 DIYKKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKN 294 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHH
Confidence 3456788888888888765 3456999999999999985
No 24
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=79.65 E-value=0.37 Score=30.86 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=16.5
Q ss_pred CchhhHHHHHHhhhhhhcc
Q 032448 121 DPNADRINRIKGEMSQVEM 139 (140)
Q Consensus 121 ~~~~dkl~~l~~~l~evk~ 139 (140)
+++.|+|.+++.+|+||++
T Consensus 29 ~~~~d~l~~vq~evdeVk~ 47 (119)
T 2kog_A 29 LTSNRRLQQTQAQVDEVVD 47 (119)
T ss_dssp SSSCSHHHHSSHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHH
Confidence 3678999999999999974
No 25
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=59.79 E-value=9.5 Score=20.30 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=13.6
Q ss_pred hhHHHHHHhhhhhhcc
Q 032448 124 ADRINRIKGEMSQVEM 139 (140)
Q Consensus 124 ~dkl~~l~~~l~evk~ 139 (140)
.++|++|+.+|++|+.
T Consensus 31 ~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 31 RERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3899999999999975
No 26
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=52.43 E-value=29 Score=21.43 Aligned_cols=42 Identities=21% Similarity=0.395 Sum_probs=31.2
Q ss_pred eEEEEEEeCCeeEeeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCeEEEEEE
Q 032448 3 ILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKR 57 (140)
Q Consensus 3 I~Ya~Var~~~iL~e~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~ 57 (140)
|+|..|++++ +|++++..|. +|.- +.+--++++++..||...
T Consensus 86 iiyltiskdn--icqfsdekge----------qidi-nsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 86 IIYLTISKDN--ICQFSDEKGE----------QIDI-NSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEECTTC--CEEEECTTSC----------EECC-CSSSSEEEETTEEEEEEE
T ss_pred EEEEEEecCc--ceecccccCc----------Eeec-cccccceeecceEeehhc
Confidence 7888888875 5788877663 4442 456678999999999765
No 27
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=43.08 E-value=31 Score=21.75 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHHHHhhccccccccCCCccchhhHHHHHHHHHHhcCCc----hhhHHHHHHhhhhhhc
Q 032448 73 RRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDP----NADRINRIKGEMSQVE 138 (140)
Q Consensus 73 ~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~----~~dkl~~l~~~l~evk 138 (140)
++-+-.=+.+.-.+|...|..+......-++ ..+...|..+--||++.. ..+...+|.+|++++.
T Consensus 40 ~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf-~tm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE 108 (115)
T 2kmf_A 40 RQEVQDTARGQINDYISRYRRKGDAGGLKSF-TTMQTALNSLAGYYTSYGARPIPEKLKKRLQLEFTQAE 108 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCSSSCHHH-HHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Confidence 4445666777778888888644222222233 366788888888887443 3577788999998764
No 28
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=42.97 E-value=44 Score=20.96 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHHHHhhccccccccCCCccchhhHHHHHHHHHHhcCCc----hhhHHHHHHhhhhhhc
Q 032448 74 RIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDP----NADRINRIKGEMSQVE 138 (140)
Q Consensus 74 ~~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~----~~dkl~~l~~~l~evk 138 (140)
+-+-.=+.+.-.+|...|.........-++ ..+...|..+--||+... ..+...+|.+|++++.
T Consensus 37 ~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf-ttm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE 104 (113)
T 2y6x_A 37 KAAQAEARKKLNDFFALYRRDDSLRSLSSF-MTMQTALNSLAGHYSSYPNRPLPEKLKARLEQEFKQVE 104 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTSHHH-HHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Confidence 345556666777888888644222222233 366788889999998554 3577788888988764
No 29
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=38.96 E-value=14 Score=21.44 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHhcCCchhh
Q 032448 105 DEFSRVLSQQMEYYSDDPNAD 125 (140)
Q Consensus 105 ~~F~~~l~~~~~~yn~~~~~d 125 (140)
+.|...+++++.+||.|-+.|
T Consensus 28 ~RFQ~~Mq~lieKYn~PFeD~ 48 (81)
T 3r45_C 28 RRFQRRMQRLIEKYNQPFEDT 48 (81)
T ss_dssp HHHHHHHHHHHHHHCSCCTTS
T ss_pred HHHHHHHHHHHHHcCCCCCCC
Confidence 588899999999998765444
No 30
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=37.81 E-value=13 Score=23.29 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHH----hccCCCCCCCceEEeeCC-eEEEEEE--eCCeEEEEEecCCCCcccHH
Q 032448 21 TATNASAIARQI----LDKIPGNNDSHVSYSQDR-YIFHVKR--TDGLTVLCMADDTAGRRIPF 77 (140)
Q Consensus 21 ~~~~~~~~~~~v----l~~i~~~~~~k~~~~~~~-~~~h~l~--~~~~~~~citd~~~~~~~af 77 (140)
.-.+|+.+...+ -++++...+-|..++.++ ..++=+. ++|-.|+|. ..+-.+++.|
T Consensus 39 ~~~tfd~LL~~lT~~Ls~~v~lp~GVR~lyt~~G~~~I~sl~dL~dG~~YVc~-~~e~fk~i~Y 101 (113)
T 1mg4_A 39 RFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYVCG-SIEPFKKLEY 101 (113)
T ss_dssp TCSSHHHHHHHHHHHHCCSSSSTTCCCEEEETTSSCBCCSGGGCCTTCEEEEE-SSSCCCCCCT
T ss_pred ccCCHHHHHHHHHHHHhhcCCCCcceeEEEcCCCCeEcCCHHHhhCCCEEEEe-CCCCceecCc
Confidence 346787666665 345554457888888776 6555443 388899995 4444444443
No 31
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.81 E-value=47 Score=22.43 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHhhhhhhc
Q 032448 109 RVLSQQMEYYSDDPNADRINRIKGEMSQVE 138 (140)
Q Consensus 109 ~~l~~~~~~yn~~~~~dkl~~l~~~l~evk 138 (140)
..|+.++. .++++..+|.++.+++.+++
T Consensus 99 ~EL~aL~~--a~~~DeakI~aL~~Ei~~Lr 126 (175)
T 3lay_A 99 YEYNALLT--ASSPDTAKINAVAKEMESLG 126 (175)
T ss_dssp HHHHHHHT--SSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCCHHHHHHHHHHHHHHH
Confidence 34555543 35567788888888887765
No 32
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=27.00 E-value=24 Score=16.05 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=5.6
Q ss_pred HHHHHhhhhhhc
Q 032448 127 INRIKGEMSQVE 138 (140)
Q Consensus 127 l~~l~~~l~evk 138 (140)
+.+|++.+.+++
T Consensus 7 ~~kiK~kl~~ak 18 (26)
T 2kfe_A 7 MSNLKEKLSGVK 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444554444
No 33
>4ftx_A Protein SLM4; EGO complex, EGO3, TOR signaling, protein binding; 2.10A {Saccharomyces cerevisiae} PDB: 3lgo_A 4fuw_A
Probab=26.56 E-value=1.1e+02 Score=20.34 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=31.1
Q ss_pred eEEEEEEeC-----------CeEEEEEecCCCCcccHHHHHHHHHHHHHhhcc
Q 032448 51 YIFHVKRTD-----------GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (140)
Q Consensus 51 ~~~h~l~~~-----------~~~~~citd~~~~~~~af~fL~~i~~~F~~~~~ 92 (140)
..|.|-.+| ++--+-|+|.+||--..-.=++.....|...||
T Consensus 106 rIYTYEiEDLHaCVAqIP~SDLLLLfIAd~~yPyGLLv~KmK~al~af~dlyG 158 (170)
T 4ftx_A 106 KIYTYEMEDLHTCVAQIPNSDLLLLFIAEGSFPYGLLVIKIERAMRELTDLFG 158 (170)
T ss_dssp EEEEEEETTEEEEEEECTTSSEEEEEEEETTSCHHHHHHHHHHHHGGGGGGTT
T ss_pred EEEEEEhhhhHHHHhcCCCCCeEEEEeecCCCchHHHHHHHHHHHHHHHHHhc
Confidence 456677776 899999999999966555555666667777776
No 34
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=21.98 E-value=59 Score=19.97 Aligned_cols=54 Identities=13% Similarity=0.301 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhccCCCCCC-CceEEeeCCeEEEEEEe--CCeEEEEEecCCCCcccHH
Q 032448 23 TNASAIARQILDKIPGNND-SHVSYSQDRYIFHVKRT--DGLTVLCMADDTAGRRIPF 77 (140)
Q Consensus 23 ~~~~~~~~~vl~~i~~~~~-~k~~~~~~~~~~h~l~~--~~~~~~citd~~~~~~~af 77 (140)
.+|+++...+-+++....+ -|..++.++..++-+.+ +|=.|+|...+.+ ++++|
T Consensus 40 ~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~l~dl~dg~~YVa~g~E~f-k~~~Y 96 (108)
T 2dnf_A 40 NQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQFYVAVGRDKF-KKLPY 96 (108)
T ss_dssp TCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESSTTSCCSSCBEEEECSSCC-CCCCC
T ss_pred cCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCCHHHhCCCCEEEEeCCCcc-eeccc
Confidence 6789888888888875333 58888888866553322 5559999875544 34443
No 35
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=21.19 E-value=78 Score=15.08 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=13.4
Q ss_pred cccHHHHHHHHHHHHHh
Q 032448 73 RRIPFAFLEDIHQRFVK 89 (140)
Q Consensus 73 ~~~af~fL~~i~~~F~~ 89 (140)
..-+-.||+.+...|+.
T Consensus 12 ~EsPs~FlerL~eayR~ 28 (32)
T 1bm4_A 12 NESPSAFLERLKEAYRR 28 (32)
T ss_dssp GGHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHh
Confidence 44578899999998864
Done!