Query 032449
Match_columns 140
No_of_seqs 110 out of 625
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 23:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eh2_A Protein transport prote 100.0 7.6E-37 2.6E-41 277.1 9.8 118 7-126 15-132 (766)
2 3efo_B SEC24 related gene fami 100.0 8.9E-37 3E-41 276.8 9.5 119 6-126 18-136 (770)
3 1pcx_A Protein transport prote 100.0 2.1E-31 7.3E-36 242.6 7.3 102 24-127 50-151 (810)
4 1m2v_B SEC24, protein transpor 100.0 4.4E-31 1.5E-35 243.3 7.5 101 24-126 166-266 (926)
5 3eh1_A Protein transport prote 99.9 6.5E-29 2.2E-33 224.9 5.9 89 31-126 34-122 (751)
6 2nut_A Protein transport prote 99.9 2.1E-28 7.2E-33 221.8 1.4 96 25-127 6-103 (769)
7 1m2o_A SEC23, protein transpor 99.9 1.7E-26 5.8E-31 209.2 3.6 87 34-127 6-94 (768)
8 2yrc_A Protein transport prote 99.7 3.4E-19 1.2E-23 115.2 2.5 52 85-136 6-59 (59)
9 1gh9_A 8.3 kDa protein (gene M 86.4 0.38 1.3E-05 31.4 2.2 31 87-123 3-33 (71)
10 2a20_A Regulating synaptic mem 85.2 0.2 6.9E-06 31.9 0.4 28 87-118 32-59 (62)
11 1pft_A TFIIB, PFTFIIBN; N-term 80.8 3.5 0.00012 24.1 4.8 29 88-119 5-33 (50)
12 2j9u_B VPS36, vacuolar protein 79.5 0.56 1.9E-05 31.1 0.9 21 108-128 15-35 (76)
13 4gat_A Nitrogen regulatory pro 68.0 1.5 5.3E-05 28.0 0.8 32 86-118 7-38 (66)
14 2csz_A Synaptotagmin-like prot 67.7 2.5 8.5E-05 27.9 1.7 31 89-119 43-73 (76)
15 2avu_E Flagellar transcription 65.3 1.3 4.6E-05 34.0 0.1 31 85-118 131-162 (192)
16 1zbd_B Rabphilin-3A; G protein 63.7 3.8 0.00013 29.4 2.2 31 89-119 73-107 (134)
17 1x0t_A Ribonuclease P protein 63.3 2.2 7.7E-05 30.0 0.9 36 89-124 66-108 (120)
18 2zet_C Melanophilin; complex, 63.0 1.7 5.8E-05 32.0 0.3 31 89-119 86-117 (153)
19 2vut_I AREA, nitrogen regulato 62.6 1.6 5.3E-05 25.7 -0.0 30 88-118 1-30 (43)
20 1vq8_Z 50S ribosomal protein L 59.7 8 0.00027 25.6 3.1 29 88-120 27-55 (83)
21 2iyb_E Testin, TESS, TES; LIM 58.2 16 0.00056 21.8 4.3 43 89-131 3-53 (65)
22 2kwq_A Protein MCM10 homolog; 56.8 6.9 0.00024 26.6 2.5 32 87-120 14-57 (92)
23 3j20_Y 30S ribosomal protein S 54.9 6.3 0.00022 23.6 1.8 26 88-119 19-46 (50)
24 2hgo_A CASSIICOLIN; toxin, dis 54.7 5.3 0.00018 20.9 1.2 26 90-116 2-27 (27)
25 6rxn_A Rubredoxin; electron tr 54.1 1.9 6.5E-05 25.7 -0.7 31 89-119 5-39 (46)
26 2lk0_A RNA-binding protein 5; 53.2 3.4 0.00012 22.5 0.3 13 109-121 4-16 (32)
27 2d8z_A Four and A half LIM dom 53.1 16 0.00054 22.0 3.6 32 87-119 4-40 (70)
28 2k3r_A Ribonuclease P protein 51.9 3.6 0.00012 29.1 0.4 36 89-124 61-103 (123)
29 1a7i_A QCRP2 (LIM1); LIM domai 51.1 11 0.00039 23.4 2.7 32 88-119 7-43 (81)
30 1s24_A Rubredoxin 2; electron 50.9 2.2 7.6E-05 28.8 -0.8 34 86-119 33-77 (87)
31 4hc9_A Trans-acting T-cell-spe 50.3 2.7 9.3E-05 29.5 -0.5 31 87-118 4-34 (115)
32 1x4l_A Skeletal muscle LIM-pro 49.7 16 0.00054 22.1 3.2 32 88-119 5-44 (72)
33 1iml_A CRIP, cysteine rich int 48.7 11 0.00036 23.3 2.2 11 89-99 28-38 (76)
34 2cu8_A Cysteine-rich protein 2 47.4 15 0.00051 22.6 2.8 44 88-131 9-57 (76)
35 1yk4_A Rubredoxin, RD; electro 46.9 3 0.0001 25.3 -0.6 12 108-119 33-44 (52)
36 1nyp_A Pinch protein; LIM doma 46.4 16 0.00055 21.7 2.8 43 88-131 5-52 (66)
37 2gmg_A Hypothetical protein PF 45.3 4.5 0.00015 28.2 0.0 33 87-124 66-98 (105)
38 1w7p_D VPS36P, YLR417W; ESCRT- 45.3 4.5 0.00015 35.7 0.0 18 108-125 115-132 (566)
39 1j2o_A FLIN2, fusion of rhombo 45.2 28 0.00094 23.2 4.1 32 88-119 3-39 (114)
40 2apo_B Ribosome biogenesis pro 45.0 10 0.00035 23.8 1.6 28 86-123 4-31 (60)
41 1x61_A Thyroid receptor intera 44.3 18 0.0006 21.8 2.8 34 87-120 4-43 (72)
42 3j21_g 50S ribosomal protein L 44.0 6.6 0.00022 23.9 0.6 30 86-123 12-41 (51)
43 2k1p_A Zinc finger RAN-binding 43.7 4.7 0.00016 22.0 -0.1 13 110-122 6-18 (33)
44 1gnf_A Transcription factor GA 43.3 2.4 8.2E-05 25.2 -1.4 30 88-118 4-33 (46)
45 2kdx_A HYPA, hydrogenase/ureas 43.2 7.3 0.00025 26.8 0.8 28 87-120 72-100 (119)
46 1x64_A Alpha-actinin-2 associa 42.2 51 0.0017 20.7 4.9 45 86-131 23-72 (89)
47 2d8y_A Eplin protein; LIM doma 41.9 26 0.0009 22.3 3.4 45 87-131 14-63 (91)
48 4rxn_A Rubredoxin; electron tr 41.3 4.3 0.00015 24.9 -0.5 12 108-119 34-45 (54)
49 1dx8_A Rubredoxin; electron tr 41.2 4.5 0.00015 26.0 -0.5 33 87-119 6-49 (70)
50 2egq_A FHL1 protein; LIM domai 41.1 34 0.0012 20.7 3.8 44 88-131 15-67 (77)
51 1m3v_A FLIN4, fusion of the LI 40.9 18 0.00061 24.6 2.6 11 89-99 6-16 (122)
52 1yuz_A Nigerythrin; rubrythrin 40.0 6.3 0.00021 29.9 0.1 27 87-120 170-196 (202)
53 2l4z_A DNA endonuclease RBBP8, 39.9 31 0.0011 23.6 3.7 46 86-131 59-111 (123)
54 2dj7_A Actin-binding LIM prote 39.2 22 0.00076 22.3 2.7 45 86-131 13-62 (80)
55 2v3b_B Rubredoxin 2, rubredoxi 38.7 12 0.00042 22.8 1.3 12 109-120 2-13 (55)
56 2cur_A Skeletal muscle LIM-pro 38.2 22 0.00075 21.2 2.5 31 88-119 5-40 (69)
57 1nj3_A NPL4; NZF domain, rubre 36.1 11 0.00037 19.9 0.7 15 109-123 5-19 (31)
58 2jny_A Uncharacterized BCR; st 36.0 23 0.00078 22.4 2.3 33 86-122 8-40 (67)
59 1e8j_A Rubredoxin; iron-sulfur 35.9 12 0.00042 22.5 1.0 12 109-120 2-13 (52)
60 2kvh_A Zinc finger and BTB dom 35.7 12 0.00042 17.2 0.8 12 109-120 2-13 (27)
61 2d8x_A Protein pinch; LIM doma 35.4 36 0.0012 20.3 3.1 31 88-119 5-40 (70)
62 2js4_A UPF0434 protein BB2007; 35.3 24 0.00081 22.5 2.3 33 86-122 6-38 (70)
63 2elx_A Zinc finger protein 406 35.2 14 0.00047 18.1 1.0 13 108-120 5-17 (35)
64 1zso_A Hypothetical protein; s 34.7 15 0.00053 27.2 1.5 35 88-122 37-82 (164)
65 1fp0_A KAP-1 corepressor; PHD 33.9 23 0.0008 23.6 2.2 37 85-122 34-75 (88)
66 3a9j_C Mitogen-activated prote 33.8 13 0.00045 20.0 0.8 14 108-121 6-19 (34)
67 2co8_A NEDD9 interacting prote 33.3 21 0.00073 22.4 1.9 34 86-119 13-51 (82)
68 1x3h_A Leupaxin; paxillin fami 33.3 43 0.0015 20.5 3.3 43 88-131 15-62 (80)
69 1srk_A Zinc finger protein ZFP 32.7 17 0.00059 17.8 1.1 13 108-120 5-17 (35)
70 3gj3_B Nuclear pore complex pr 32.6 12 0.00041 20.6 0.4 15 109-123 6-20 (33)
71 2cuq_A Four and A half LIM dom 31.6 35 0.0012 20.8 2.7 32 88-120 15-51 (80)
72 1vd4_A Transcription initiatio 31.5 19 0.00064 20.9 1.3 36 86-121 12-50 (62)
73 2jr6_A UPF0434 protein NMA0874 30.8 32 0.0011 21.7 2.3 33 86-122 6-38 (68)
74 1tot_A CREB-binding protein; z 30.8 36 0.0012 20.2 2.5 20 89-117 7-26 (52)
75 1rfh_A RAS association (ralgds 30.5 36 0.0012 20.4 2.5 25 86-118 20-44 (59)
76 1wii_A Hypothetical UPF0222 pr 30.5 9.4 0.00032 25.5 -0.3 14 109-122 22-35 (85)
77 3dfx_A Trans-acting T-cell-spe 30.1 4.6 0.00016 25.5 -1.8 31 87-118 6-36 (63)
78 2els_A Zinc finger protein 406 30.0 20 0.00069 17.7 1.1 13 108-120 7-19 (36)
79 2kvf_A Zinc finger and BTB dom 30.0 17 0.00057 16.7 0.7 12 109-120 2-13 (28)
80 2m0f_A Zinc finger and BTB dom 29.8 17 0.0006 16.6 0.8 11 110-120 2-12 (29)
81 2lri_C Autoimmune regulator; Z 29.4 9.8 0.00034 23.8 -0.3 34 86-119 22-59 (66)
82 1x68_A FHL5 protein; four-and- 29.4 42 0.0014 20.4 2.8 30 89-119 36-65 (76)
83 2lvu_A Zinc finger and BTB dom 35.3 12 0.00039 17.1 0.0 11 110-120 2-12 (26)
84 2elq_A Zinc finger protein 406 29.1 19 0.00066 17.8 0.9 13 108-120 7-19 (36)
85 2cup_A Skeletal muscle LIM-pro 28.7 61 0.0021 20.6 3.6 10 89-98 6-15 (101)
86 1k81_A EIF-2-beta, probable tr 28.6 35 0.0012 18.8 2.0 12 111-122 22-33 (36)
87 2elt_A Zinc finger protein 406 28.5 20 0.00069 17.6 0.9 12 109-120 8-19 (36)
88 1x62_A C-terminal LIM domain p 28.4 14 0.00049 22.9 0.3 33 86-119 13-50 (79)
89 2kn9_A Rubredoxin; metalloprot 28.4 23 0.00079 23.4 1.4 13 108-120 25-37 (81)
90 2elv_A Zinc finger protein 406 27.3 24 0.00082 17.4 1.1 12 109-120 8-19 (36)
91 2elp_A Zinc finger protein 406 27.3 23 0.0008 17.6 1.0 13 108-120 7-19 (37)
92 2cr8_A MDM4 protein; ZF-ranbp 27.1 17 0.00059 22.2 0.5 13 109-121 10-22 (53)
93 1wig_A KIAA1808 protein; LIM d 26.8 24 0.00081 21.6 1.2 11 89-99 32-42 (73)
94 2fnf_X Putative RAS effector N 26.8 29 0.001 21.8 1.7 25 86-118 33-57 (72)
95 1x63_A Skeletal muscle LIM-pro 26.8 53 0.0018 20.1 2.9 33 88-120 15-53 (82)
96 1rik_A E6APC1 peptide; E6-bind 26.5 22 0.00074 16.3 0.8 11 110-120 2-12 (29)
97 2c6a_A Ubiquitin-protein ligas 26.4 18 0.0006 21.6 0.5 12 109-120 12-23 (46)
98 2kvg_A Zinc finger and BTB dom 26.4 21 0.00072 16.5 0.7 12 109-120 2-13 (27)
99 2elm_A Zinc finger protein 406 26.4 29 0.001 17.4 1.4 13 108-120 7-19 (37)
100 3pwf_A Rubrerythrin; non heme 26.3 21 0.00073 26.2 1.0 14 108-121 136-149 (170)
101 2m0d_A Zinc finger and BTB dom 26.3 23 0.00077 16.2 0.8 12 109-120 2-13 (30)
102 2l5u_A Chromodomain-helicase-D 26.2 16 0.00056 22.2 0.3 35 85-119 20-58 (61)
103 2hf1_A Tetraacyldisaccharide-1 25.9 27 0.00091 22.1 1.3 32 87-122 7-38 (68)
104 1dl6_A Transcription factor II 25.6 28 0.00096 21.1 1.3 29 88-119 11-39 (58)
105 1twf_I B12.6, DNA-directed RNA 25.5 8.6 0.00029 26.9 -1.2 35 88-122 4-38 (122)
106 1nvp_C Transcription initiatio 25.4 38 0.0013 22.2 2.0 22 98-119 36-57 (76)
107 3i2d_A E3 SUMO-protein ligase 25.2 2.8 9.6E-05 35.2 -4.4 41 86-126 260-304 (371)
108 3iuf_A Zinc finger protein UBI 25.1 27 0.00091 19.1 1.1 13 108-120 5-17 (48)
109 2k4x_A 30S ribosomal protein S 25.0 39 0.0013 20.4 1.9 28 88-119 18-45 (55)
110 2dar_A PDZ and LIM domain prot 24.9 66 0.0023 20.2 3.2 45 86-131 23-72 (90)
111 3gj5_B Nuclear pore complex pr 24.9 25 0.00085 19.4 0.9 15 109-123 6-20 (34)
112 2d9g_A YY1-associated factor 2 24.7 22 0.00076 21.4 0.7 19 102-120 17-35 (53)
113 1nh2_C Transcription initiatio 24.4 40 0.0014 22.2 2.0 22 98-119 38-59 (79)
114 3mjh_B Early endosome antigen 24.3 26 0.00087 19.4 0.9 10 110-119 5-14 (34)
115 2ept_A Zinc finger protein 32; 24.2 29 0.001 17.7 1.1 13 108-120 8-20 (41)
116 2el5_A Zinc finger protein 268 24.2 28 0.00094 17.8 1.0 13 108-120 8-20 (42)
117 1lko_A Rubrerythrin all-iron(I 24.0 25 0.00086 26.1 1.0 12 109-120 154-165 (191)
118 1f62_A Transcription factor WS 23.7 13 0.00043 21.6 -0.6 34 86-119 13-50 (51)
119 1njq_A Superman protein; zinc- 23.1 29 0.00098 17.6 0.9 12 109-120 5-16 (39)
120 2ytf_A Zinc finger protein 268 23.1 29 0.001 18.1 1.0 13 108-120 10-22 (46)
121 2eof_A Zinc finger protein 268 22.9 30 0.001 17.8 1.0 13 108-120 10-22 (44)
122 1ard_A Yeast transcription fac 22.9 16 0.00054 16.8 -0.2 11 110-120 2-12 (29)
123 2elr_A Zinc finger protein 406 22.9 17 0.00059 17.9 -0.0 12 109-120 8-19 (36)
124 2epc_A Zinc finger protein 32; 22.8 32 0.0011 17.5 1.1 13 108-120 9-21 (42)
125 4fo9_A E3 SUMO-protein ligase 22.7 3.1 0.00011 34.8 -4.6 42 86-127 226-271 (360)
126 1p7a_A BF3, BKLF, kruppel-like 22.6 18 0.00061 18.0 -0.0 12 109-120 10-21 (37)
127 1xwh_A Autoimmune regulator; P 22.5 12 0.00042 23.1 -0.8 36 86-121 18-57 (66)
128 2emi_A Zinc finger protein 484 22.5 33 0.0011 18.0 1.1 14 107-120 9-22 (46)
129 2lvr_A Zinc finger and BTB dom 28.1 18 0.00063 16.7 0.0 12 109-120 2-13 (30)
130 2lvt_A Zinc finger and BTB dom 28.0 18 0.00063 16.7 0.0 11 110-120 2-12 (29)
131 2ytp_A Zinc finger protein 484 22.4 33 0.0011 18.0 1.1 13 108-120 10-22 (46)
132 2elo_A Zinc finger protein 406 22.3 27 0.00092 17.2 0.7 13 108-120 7-19 (37)
133 2m0o_A PHD finger protein 1; t 22.2 65 0.0022 21.2 2.6 29 78-106 22-52 (79)
134 1faq_A RAF-1; transferase, ser 22.1 83 0.0028 17.8 3.0 25 86-119 12-36 (52)
135 3na7_A HP0958; flagellar bioge 22.1 9.7 0.00033 29.5 -1.7 33 90-122 200-234 (256)
136 2eow_A Zinc finger protein 347 21.9 34 0.0012 17.8 1.1 13 108-120 10-22 (46)
137 3h0g_L DNA-directed RNA polyme 21.8 22 0.00075 22.4 0.3 29 88-121 21-49 (63)
138 2yql_A PHD finger protein 21A; 21.7 13 0.00044 22.2 -0.8 32 86-117 19-54 (56)
139 2yrj_A Zinc finger protein 473 21.4 35 0.0012 17.8 1.1 13 108-120 10-22 (46)
140 3uk3_C Zinc finger protein 217 21.3 18 0.00063 19.9 -0.2 11 109-119 3-13 (57)
141 2con_A RUH-035 protein, NIN on 21.2 43 0.0015 21.9 1.6 44 86-136 13-58 (79)
142 2yts_A Zinc finger protein 484 21.2 34 0.0012 17.8 1.0 14 107-120 9-22 (46)
143 2ep3_A Zinc finger protein 484 21.0 34 0.0012 17.9 1.0 13 108-120 10-22 (46)
144 2emy_A Zinc finger protein 268 21.0 36 0.0012 17.8 1.1 14 107-120 9-22 (46)
145 1b8t_A Protein (CRP1); LIM dom 20.9 75 0.0026 23.0 3.1 45 87-131 114-163 (192)
146 1nui_A DNA primase/helicase; z 20.9 59 0.002 24.6 2.6 32 88-122 14-45 (255)
147 2i5o_A DNA polymerase ETA; zin 20.9 52 0.0018 18.6 1.7 15 86-100 7-21 (39)
148 2en2_A B-cell lymphoma 6 prote 20.9 34 0.0012 17.4 0.9 13 108-120 9-21 (42)
149 4bbr_M Transcription initiatio 20.8 53 0.0018 26.6 2.5 30 88-118 21-50 (345)
150 3irb_A Uncharacterized protein 20.7 36 0.0012 24.2 1.3 27 86-120 45-71 (145)
151 2m0e_A Zinc finger and BTB dom 20.5 19 0.00064 16.4 -0.2 11 110-120 2-12 (29)
152 2yto_A Zinc finger protein 484 20.4 39 0.0013 17.7 1.1 13 108-120 10-22 (46)
153 1nee_A EIF-2-beta, probable tr 20.4 69 0.0024 22.9 2.8 35 89-124 103-137 (138)
154 1klr_A Zinc finger Y-chromosom 20.4 19 0.00063 16.5 -0.3 11 110-120 2-12 (30)
155 3m7n_A Putative uncharacterize 20.3 28 0.00097 25.5 0.7 27 88-120 140-166 (179)
156 1x4k_A Skeletal muscle LIM-pro 20.3 86 0.0029 18.5 2.9 31 89-119 6-42 (72)
157 1weq_A PHD finger protein 7; s 20.2 24 0.00082 23.5 0.2 34 85-118 43-78 (85)
158 2lcq_A Putative toxin VAPC6; P 20.1 30 0.001 24.7 0.7 26 88-119 132-157 (165)
No 1
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=7.6e-37 Score=277.07 Aligned_cols=118 Identities=41% Similarity=0.748 Sum_probs=111.0
Q ss_pred eEEeccCCCCCCCCCCCCceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCC
Q 032449 7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES 86 (140)
Q Consensus 7 ~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~ 86 (140)
..|.|..+++ .||+++++|++.|+|||+|+|||+|||+||.+++++++++||||++|+||++..++|.++|++++++.
T Consensus 15 ~~f~t~~~~~--~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~ 92 (766)
T 3eh2_A 15 EPFVTGVRGQ--VPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGES 92 (766)
T ss_dssp SEEETTSTTC--CCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGG
T ss_pred CCcccCCCCC--CCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCC
Confidence 4899997654 59999999999999999999999999999999999999999999999999998777778999998888
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCCCCC
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLS 126 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp~~~ 126 (140)
+|+||++|||||||||+|+++|++|+||||+..|.+|..+
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y 132 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQY 132 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTT
T ss_pred CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHH
Confidence 9999999999999999999999999999999999999765
No 2
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=8.9e-37 Score=276.76 Aligned_cols=119 Identities=35% Similarity=0.739 Sum_probs=110.6
Q ss_pred ceEEeccCCCCCCCCCCCCceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCC
Q 032449 6 VILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGE 85 (140)
Q Consensus 6 ~~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~ 85 (140)
...|.|..+++ .||++++.|++.|+|||+|+|||+|||+||.+++++++++||||++|+||++..++|.++|++++++
T Consensus 18 ~~~~~t~~~~~--~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~ 95 (770)
T 3efo_B 18 GQVYATNTRGQ--IPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGE 95 (770)
T ss_dssp TSEEETTSSSC--CCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTT
T ss_pred CCCccCCCCCC--CCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCC
Confidence 35789986654 5999999999999999999999999999999999999999999999999999877777799999988
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLS 126 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp~~~ 126 (140)
.+|+||++|||||||||+|+++|++|+||||+..|.+|..+
T Consensus 96 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y 136 (770)
T 3efo_B 96 SGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFY 136 (770)
T ss_dssp TCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGG
T ss_pred CCCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHh
Confidence 99999999999999999999999999999999999999654
No 3
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=99.97 E-value=2.1e-31 Score=242.57 Aligned_cols=102 Identities=32% Similarity=0.601 Sum_probs=94.0
Q ss_pred CceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCCCCcEEcCcee
Q 032449 24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME 103 (140)
Q Consensus 24 ~~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~C~aYiNPf~~ 103 (140)
.+.|+..|+|||+|+|||+|||+||.+++++++++||||++|+||++..++++++|+++. ..|+||++|||||||||+
T Consensus 50 ~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~--~~pvRC~~CrayiNPf~~ 127 (810)
T 1pcx_A 50 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT 127 (810)
T ss_dssp GGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCTTTCCBCCTTCE
T ss_pred CCccccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence 489999999999999999999999999999999999999999999987666667999873 349999999999999999
Q ss_pred EEeCCcEEEEccCCCCCCCCCCCc
Q 032449 104 FVDNGKSFVCNFCGVWMLMRGLSS 127 (140)
Q Consensus 104 ~~~~g~~w~C~lC~~~N~lp~~~~ 127 (140)
|+++|++|+||||++.|.+|..+.
T Consensus 128 ~~~~g~~W~C~~C~~~N~~P~~y~ 151 (810)
T 1pcx_A 128 FIEQGRRWRCNFCRLANDVPMQMD 151 (810)
T ss_dssp EETTTTEEECTTTCCEEECCGGGG
T ss_pred EeCCCCEEEccCCCCcCCCchhhc
Confidence 999999999999999999997543
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=99.97 E-value=4.4e-31 Score=243.35 Aligned_cols=101 Identities=33% Similarity=0.605 Sum_probs=93.5
Q ss_pred CceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCCCCcEEcCcee
Q 032449 24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME 103 (140)
Q Consensus 24 ~~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~C~aYiNPf~~ 103 (140)
++.|+..|+|||+++|||+||++||.+++++++++||||++|+||++..++++++|+++. ..|+||++|||||||||+
T Consensus 166 ~~~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~--~~pvRC~rCrAYiNPf~~ 243 (926)
T 1m2v_B 166 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT 243 (926)
T ss_dssp GGSSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCSSSCCBCCTTCE
T ss_pred CcccccccCCCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence 488999999999999999999999999999999999999999999987666667999873 349999999999999999
Q ss_pred EEeCCcEEEEccCCCCCCCCCCC
Q 032449 104 FVDNGKSFVCNFCGVWMLMRGLS 126 (140)
Q Consensus 104 ~~~~g~~w~C~lC~~~N~lp~~~ 126 (140)
|+++|++|+||||++.|.+|..+
T Consensus 244 ~~~~g~~W~CnfC~~~N~~P~~Y 266 (926)
T 1m2v_B 244 FIEQGRRWRCNFCRLANDVPMQM 266 (926)
T ss_dssp EETTTTEEECTTTCCEEECCGGG
T ss_pred EeCCCCEEEccCCCCCCCCchhh
Confidence 99999999999999999999754
No 5
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=99.95 E-value=6.5e-29 Score=224.88 Aligned_cols=89 Identities=34% Similarity=0.664 Sum_probs=81.4
Q ss_pred ccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCCCCcEEcCceeEEeCCcE
Q 032449 31 DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKS 110 (140)
Q Consensus 31 d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~C~aYiNPf~~~~~~g~~ 110 (140)
++|||+|+|||+|||+||.+++++++++||||++|+||++.. ++|+++. .+|+||++|||||||||+|.+ +++
T Consensus 34 ~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~~--~~p~RC~rCrayiNPf~~f~~-~~~ 106 (751)
T 3eh1_A 34 KKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVITS--NTIVRCRSCRTYINPFVSFID-QRR 106 (751)
T ss_dssp HHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEECC--SCCCBCTTTCCBCCTTCEESS-SSE
T ss_pred cccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccCC--CCCCcccCccCEeCCceEEec-CCE
Confidence 489999999999999999999999999999999999999763 4898874 569999999999999999954 699
Q ss_pred EEEccCCCCCCCCCCC
Q 032449 111 FVCNFCGVWMLMRGLS 126 (140)
Q Consensus 111 w~C~lC~~~N~lp~~~ 126 (140)
|+||||+..|.+|..+
T Consensus 107 w~Cn~C~~~N~~P~~y 122 (751)
T 3eh1_A 107 WKCNLCYRVNDVPEEF 122 (751)
T ss_dssp EECTTTCCEEECCGGG
T ss_pred EEcccccCCCCCCHHH
Confidence 9999999999999765
No 6
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=99.94 E-value=2.1e-28 Score=221.79 Aligned_cols=96 Identities=22% Similarity=0.276 Sum_probs=87.1
Q ss_pred ceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCC--CCcEEcCce
Q 032449 25 SKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFM 102 (140)
Q Consensus 25 ~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~--C~aYiNPf~ 102 (140)
.+|...|++|++|+|||+|||+||.+++++++++||||++|+||++. +++|+++ .+|+||++ |||||||||
T Consensus 6 ~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~---~~pvRC~~~~CrayiNPf~ 78 (769)
T 2nut_A 6 TTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKER----PDLPPIQ---YEPVLCSRTTCRAVLNPLC 78 (769)
T ss_dssp -CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCC----SCCCCBC---SCCCBCSSTTCCCBCCTTS
T ss_pred cchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCC----CCCCcCC---CCCCcCCCCCCCeEECCce
Confidence 55777788999999999999999999999999999999999999965 2488887 47999999 999999999
Q ss_pred eEEeCCcEEEEccCCCCCCCCCCCc
Q 032449 103 EFVDNGKSFVCNFCGVWMLMRGLSS 127 (140)
Q Consensus 103 ~~~~~g~~w~C~lC~~~N~lp~~~~ 127 (140)
+|+++|++|+||||++.|.+|..+.
T Consensus 79 ~~~~~~~~W~C~~C~~~N~~P~~Y~ 103 (769)
T 2nut_A 79 QVDYRAKLWACNFCYQRNQFPPSYA 103 (769)
T ss_dssp EEETTTTEEECSSSCCEEECCGGGT
T ss_pred EEeCCCCEEEccCCCCCCCCChHHc
Confidence 9999999999999999999997554
No 7
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=99.92 E-value=1.7e-26 Score=209.22 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=80.4
Q ss_pred CCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCC--CCcEEcCceeEEeCCcEE
Q 032449 34 NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFMEFVDNGKSF 111 (140)
Q Consensus 34 n~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~--C~aYiNPf~~~~~~g~~w 111 (140)
+++++|||+|||+||.+++++++++||||++|+||++. +++|+++ .+|+||++ |||||||||+|+++|++|
T Consensus 6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W 78 (768)
T 1m2o_A 6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY----DELNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSW 78 (768)
T ss_dssp HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCC----TTCCEEC---SCCCBCCSTTTCCBCCTTSCEETTTTEE
T ss_pred ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCC----CCCCcCC---CCCCccCCCCCCeEECCceEEeCCCCEE
Confidence 78999999999999999999999999999999999964 2589987 47999999 999999999999999999
Q ss_pred EEccCCCCCCCCCCCc
Q 032449 112 VCNFCGVWMLMRGLSS 127 (140)
Q Consensus 112 ~C~lC~~~N~lp~~~~ 127 (140)
+||||++.|.+|..+.
T Consensus 79 ~C~~C~~~N~~P~~y~ 94 (768)
T 1m2o_A 79 SCPICNSRNHLPPQYT 94 (768)
T ss_dssp CCTTTCCCCBCCGGGC
T ss_pred EcccCCCCCCCChHHc
Confidence 9999999999997544
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.74 E-value=3.4e-19 Score=115.21 Aligned_cols=52 Identities=25% Similarity=0.345 Sum_probs=47.8
Q ss_pred CCCeeecCC--CCcEEcCceeEEeCCcEEEEccCCCCCCCCCCCcccccccccc
Q 032449 85 ESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLSSVEGQLNLLL 136 (140)
Q Consensus 85 ~~~~~RC~~--C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp~~~~~~~~~~~~~ 136 (140)
+.+|+||++ |+||||||++|++++++|+|+||++.|.+|..+...++.+||.
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~nlP~ 59 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHHSCC
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCcccCCc
Confidence 367999999 9999999999999999999999999999999888888888763
No 9
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=86.38 E-value=0.38 Score=31.36 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=23.1
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCC
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMR 123 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp 123 (140)
-++||. |+++ .-.+.+.++-.|+ ||...++.
T Consensus 3 ~vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 3 IIFRCD-CGRA----LYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEET-TSCC----EEEETTCSEEEET-TTEEEECC
T ss_pred EEEECC-CCCE----EEEcCCCcEEECC-CCCeeeec
Confidence 479999 9998 3345566667898 99877665
No 10
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=85.16 E-value=0.2 Score=31.86 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=20.1
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEEEEccCCC
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~ 118 (140)
..--|.||++++.- -.+.-.|.|++|.+
T Consensus 32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 32 QTKFCARCGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp CCEECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred CCeeecccCCEeee----cCCeEEEEehhhhh
Confidence 34567888888774 23456899999964
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=80.81 E-value=3.5 Score=24.14 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=23.0
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~ 119 (140)
+..|..|++ .-..++.....++|..||..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 568999988 23457777789999999984
No 12
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=79.54 E-value=0.56 Score=31.07 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=16.7
Q ss_pred CcEEEEccCCCCCCCCCCCcc
Q 032449 108 GKSFVCNFCGVWMLMRGLSSV 128 (140)
Q Consensus 108 g~~w~C~lC~~~N~lp~~~~~ 128 (140)
.-.|+|.+|...|.++...+.
T Consensus 15 ~~tWVCpICsfsN~v~s~fdp 35 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFTK 35 (76)
T ss_dssp CEEEECTTTCCEEEESSCCCT
T ss_pred ccceECccccccCcCccccCC
Confidence 358999999999999875443
No 13
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=68.04 E-value=1.5 Score=28.03 Aligned_cols=32 Identities=28% Similarity=0.654 Sum_probs=27.8
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~ 118 (140)
..+..|.+|++--.|.-.-...|. ..||.|+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl 38 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 38 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHH
Confidence 457899999999999988888876 99999974
No 14
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.67 E-value=2.5 Score=27.90 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=20.0
Q ss_pred eecCCCCcEEcCceeEEeCCcEEEEccCCCC
Q 032449 89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 89 ~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~ 119 (140)
..|..|+-=|.-.|.+...+..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 3455555555555555554578999999754
No 15
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=65.26 E-value=1.3 Score=33.95 Aligned_cols=31 Identities=29% Similarity=0.672 Sum_probs=21.4
Q ss_pred CCCeeecCCCCc-EEcCceeEEeCCcEEEEccCCC
Q 032449 85 ESGLVRCCCCRG-YRNPFMEFVDNGKSFVCNFCGV 118 (140)
Q Consensus 85 ~~~~~RC~~C~a-YiNPf~~~~~~g~~w~C~lC~~ 118 (140)
...+.+|++|++ ||...-. ....++|++|.-
T Consensus 131 ~L~l~~C~~Cgg~fv~~~~~---~~~~f~Cp~C~~ 162 (192)
T 2avu_E 131 LLQLSSCNCCGGNFITHAHQ---PVGSFACSLCQP 162 (192)
T ss_dssp SEEEEECTTTCCEEEEESSC---CSSCCCCTTC--
T ss_pred ceeeCcCCCCCCCeeCccCC---CCCCCcCCCCCC
Confidence 456799999986 5654442 457899999983
No 16
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=63.75 E-value=3.8 Score=29.41 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=21.8
Q ss_pred eecCCCCcEEcCceeEEe----CCcEEEEccCCCC
Q 032449 89 VRCCCCRGYRNPFMEFVD----NGKSFVCNFCGVW 119 (140)
Q Consensus 89 ~RC~~C~aYiNPf~~~~~----~g~~w~C~lC~~~ 119 (140)
..|..|+-++.--|.... ....|.|.+|...
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 677777777776666644 2358999999754
No 17
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=63.32 E-value=2.2 Score=29.99 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=26.4
Q ss_pred eecCCCCcEEcCc----eeEEeCC---cEEEEccCCCCCCCCC
Q 032449 89 VRCCCCRGYRNPF----MEFVDNG---KSFVCNFCGVWMLMRG 124 (140)
Q Consensus 89 ~RC~~C~aYiNPf----~~~~~~g---~~w~C~lC~~~N~lp~ 124 (140)
.-|++|++++=|- +.+..++ -.++|..||+...+|-
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p~ 108 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYPY 108 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEEC
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEcc
Confidence 4799999999985 3333331 4678999999887763
No 18
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=63.00 E-value=1.7 Score=32.00 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=19.5
Q ss_pred eecCCCCcEEcCcee-EEeCCcEEEEccCCCC
Q 032449 89 VRCCCCRGYRNPFME-FVDNGKSFVCNFCGVW 119 (140)
Q Consensus 89 ~RC~~C~aYiNPf~~-~~~~g~~w~C~lC~~~ 119 (140)
..|..|+.++.--|. +......|.|.+|...
T Consensus 86 ~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 86 RQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp EECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 556666666665554 2234568999999743
No 19
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=62.59 E-value=1.6 Score=25.69 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=24.2
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~ 118 (140)
+..|.+|++--.|.-+-...|. ..||.||.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHH
Confidence 3579999999888887777776 88999984
No 20
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=59.65 E-value=8 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=21.7
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWM 120 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N 120 (140)
--.|..|++-+ .+......|.|.-|+...
T Consensus 27 ~y~Cp~CG~~~----v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 27 DHACPNCGEDR----VDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp CEECSSSCCEE----EEEEETTEEEETTTCCEE
T ss_pred cCcCCCCCCcc----eeccCCCeEECCCCCCEe
Confidence 46899999832 345556799999999864
No 21
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=58.23 E-value=16 Score=21.78 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=26.7
Q ss_pred eecCCCCcEEcCc-eeEEeCCcEEE-------EccCCCCCCCCCCCccccc
Q 032449 89 VRCCCCRGYRNPF-MEFVDNGKSFV-------CNFCGVWMLMRGLSSVEGQ 131 (140)
Q Consensus 89 ~RC~~C~aYiNPf-~~~~~~g~~w~-------C~lC~~~N~lp~~~~~~~~ 131 (140)
.+|..|+-.|-+- -.+...++.|- |..|+..-.-..+....|+
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~ 53 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGM 53 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTE
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCE
Confidence 5788999888863 34445566775 8888755332234555554
No 22
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=56.78 E-value=6.9 Score=26.56 Aligned_cols=32 Identities=28% Similarity=0.624 Sum_probs=25.7
Q ss_pred CeeecCCCCcEEc------------CceeEEeCCcEEEEccCCCCC
Q 032449 87 GLVRCCCCRGYRN------------PFMEFVDNGKSFVCNFCGVWM 120 (140)
Q Consensus 87 ~~~RC~~C~aYiN------------Pf~~~~~~g~~w~C~lC~~~N 120 (140)
....|..|. |.. ++-..+--.|.|+|. |+..+
T Consensus 14 ~av~C~~C~-yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~-C~~Rt 57 (92)
T 2kwq_A 14 RVVTCKTCK-YTHFKPKETCVSENHDFHWHNGVKRFFKCP-CGNRT 57 (92)
T ss_dssp EEEEETTTC-CEESSCCHHHHHTTCCEEEEEEECEEEECT-TSCEE
T ss_pred EEEEccCCc-ceecCcchhHHhcCCceEEEeeeEEEEECC-CCCce
Confidence 468999998 775 566777778999998 99776
No 23
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.91 E-value=6.3 Score=23.58 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=19.2
Q ss_pred eeecCCCCc--EEcCceeEEeCCcEEEEccCCCC
Q 032449 88 LVRCCCCRG--YRNPFMEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 88 ~~RC~~C~a--YiNPf~~~~~~g~~w~C~lC~~~ 119 (140)
.--|.+|++ ++-+ ...+|.|.-|+..
T Consensus 19 ~k~CP~CG~~~fm~~------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMAD------HGDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEE------CSSEEECSSSCCE
T ss_pred cccCCCCCCceEEec------CCCeEECCCCCCE
Confidence 467999998 5443 2468999999864
No 24
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=54.65 E-value=5.3 Score=20.88 Aligned_cols=26 Identities=31% Similarity=0.800 Sum_probs=20.4
Q ss_pred ecCCCCcEEcCceeEEeCCcEEEEccC
Q 032449 90 RCCCCRGYRNPFMEFVDNGKSFVCNFC 116 (140)
Q Consensus 90 RC~~C~aYiNPf~~~~~~g~~w~C~lC 116 (140)
.|-.|--|=|-||- +.-|..|-|.-|
T Consensus 2 ~cvscv~fgngfcg-dncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCG-DNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEE-CSSSCEEECSCC
T ss_pred cceEeEeecCcccc-CCcCCcccccCC
Confidence 37778888899995 456789999866
No 25
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=54.12 E-value=1.9 Score=25.69 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=16.7
Q ss_pred eecCCCCcEEcCc----eeEEeCCcEEEEccCCCC
Q 032449 89 VRCCCCRGYRNPF----MEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 89 ~RC~~C~aYiNPf----~~~~~~g~~w~C~lC~~~ 119 (140)
-+|..|+-...|- ..|.+--..|+|++|+..
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 4677776433321 222222335888888864
No 26
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=53.21 E-value=3.4 Score=22.47 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=10.8
Q ss_pred cEEEEccCCCCCC
Q 032449 109 KSFVCNFCGVWML 121 (140)
Q Consensus 109 ~~w~C~lC~~~N~ 121 (140)
.-|+|+.|+..|-
T Consensus 4 gDW~C~~C~~~Nf 16 (32)
T 2lk0_A 4 EDWLCNKCCLNNF 16 (32)
T ss_dssp SEEECTTTCCEEE
T ss_pred CCCCcCcCcCCcC
Confidence 3699999998874
No 27
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.12 E-value=16 Score=21.95 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=21.3
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEE-----EEccCCCC
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVW 119 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~ 119 (140)
...+|..|+..|-.-. +...++.| +|..|+..
T Consensus 4 ~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~~ 40 (70)
T 2d8z_A 4 GSSGCVQCKKPITTGG-VTYREQPWHKECFVCTACRKQ 40 (70)
T ss_dssp CCCBCSSSCCBCCSSE-EESSSSEEETTTSBCSSSCCB
T ss_pred CCCCCcccCCeeccce-EEECccccCCCCCccCCCCCc
Confidence 3468888888776532 44556676 57777764
No 28
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=51.92 E-value=3.6 Score=29.09 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=26.1
Q ss_pred eecCCCCcEEcCc----eeEEeCC---cEEEEccCCCCCCCCC
Q 032449 89 VRCCCCRGYRNPF----MEFVDNG---KSFVCNFCGVWMLMRG 124 (140)
Q Consensus 89 ~RC~~C~aYiNPf----~~~~~~g---~~w~C~lC~~~N~lp~ 124 (140)
.-|++|++++=|- +.+..++ -.++|..||+...+|-
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p~ 103 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYPY 103 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEEC
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEec
Confidence 4799999999985 3333332 3678999998876663
No 29
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=51.10 E-value=11 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=18.1
Q ss_pred eeecCCCCcEEcCceeEEeCCcEE-----EEccCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVW 119 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~ 119 (140)
..+|.+|+-.|-+--.+...++.| +|..|+..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~ 43 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKN 43 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCE
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCC
Confidence 467777777774322344455555 67777653
No 30
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=50.85 E-value=2.2 Score=28.79 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=21.7
Q ss_pred CCeeecCCCCcEEcCc-----------eeEEeCCcEEEEccCCCC
Q 032449 86 SGLVRCCCCRGYRNPF-----------MEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf-----------~~~~~~g~~w~C~lC~~~ 119 (140)
...-+|..|+-...|- ..|++--..|+|++|+..
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 4568999998444431 223333356999999974
No 31
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=50.33 E-value=2.7 Score=29.47 Aligned_cols=31 Identities=26% Similarity=0.638 Sum_probs=25.6
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEEEEccCCC
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~ 118 (140)
....|.+|++-..|.-.-+..| .+.||.|+.
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl 34 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGL 34 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred CCCCCCCCCCccCCcceECCCC-CCcCcchhh
Confidence 3578999999999998888776 699999983
No 32
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.71 E-value=16 Score=22.14 Aligned_cols=32 Identities=13% Similarity=0.299 Sum_probs=19.2
Q ss_pred eeecCCCCcEEcCc---eeEEeCCcEE-----EEccCCCC
Q 032449 88 LVRCCCCRGYRNPF---MEFVDNGKSF-----VCNFCGVW 119 (140)
Q Consensus 88 ~~RC~~C~aYiNPf---~~~~~~g~~w-----~C~lC~~~ 119 (140)
..+|..|+-.|-++ -.+...++.| +|..|+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~ 44 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLS 44 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCB
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCc
Confidence 46788888877751 1122234565 67777754
No 33
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=48.74 E-value=11 Score=23.29 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=6.1
Q ss_pred eecCCCCcEEc
Q 032449 89 VRCCCCRGYRN 99 (140)
Q Consensus 89 ~RC~~C~aYiN 99 (140)
.+|..|+.-|.
T Consensus 28 F~C~~C~~~L~ 38 (76)
T 1iml_A 28 LKCEKCGKTLT 38 (76)
T ss_dssp CBCTTTCCBCC
T ss_pred CCccccCccCC
Confidence 45556655554
No 34
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.42 E-value=15 Score=22.56 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=26.0
Q ss_pred eeecCCCCcEEcCceeEEeCCcEE-----EEccCCCCCCCCCCCccccc
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVWMLMRGLSSVEGQ 131 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~N~lp~~~~~~~~ 131 (140)
..+|..|+-.|-+--.+...++.| +|..|+..-.-..+....|+
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~ 57 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGK 57 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTE
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCE
Confidence 478888888887433344556666 57777765432234444443
No 35
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=46.93 E-value=3 Score=25.29 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=8.1
Q ss_pred CcEEEEccCCCC
Q 032449 108 GKSFVCNFCGVW 119 (140)
Q Consensus 108 g~~w~C~lC~~~ 119 (140)
-..|+|++|+..
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 345888888763
No 36
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=46.43 E-value=16 Score=21.69 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=24.2
Q ss_pred eeecCCCCcEEcCceeEEeCCcEE-----EEccCCCCCCCCCCCccccc
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVWMLMRGLSSVEGQ 131 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~N~lp~~~~~~~~ 131 (140)
..+|..|+--|-.- .+...++.| +|..|+..-.-..+...+|+
T Consensus 5 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~ 52 (66)
T 1nyp_A 5 VPICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGL 52 (66)
T ss_dssp CCEETTTTEECCSC-EECCTTSBEETTTCBCTTTCCBCSSSCCEEETTE
T ss_pred CCCCcccCCEecce-EEEECccccccCcCEECCCCCCCCCCceEeECCc
Confidence 46788888777632 233345555 78888764332334444554
No 37
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=45.33 E-value=4.5 Score=28.23 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=23.4
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCCC
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRG 124 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp~ 124 (140)
.+.+|++|+-- | .+.-++.-+|+.|+..|..+.
T Consensus 66 ~p~~C~~CG~~---F--~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 66 KPAQCRKCGFV---F--KAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp CCCBBTTTCCB---C--CCCSSCCSSCSSSCCCCBCCC
T ss_pred ECcChhhCcCe---e--cccCCCCCCCcCCCCCccCCc
Confidence 47899999854 3 233345578999999987654
No 38
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=45.29 E-value=4.5 Score=35.72 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=0.0
Q ss_pred CcEEEEccCCCCCCCCCC
Q 032449 108 GKSFVCNFCGVWMLMRGL 125 (140)
Q Consensus 108 g~~w~C~lC~~~N~lp~~ 125 (140)
...|+|.+|...|.+|+-
T Consensus 115 ~~tWvC~ICsfsN~~~~~ 132 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGE 132 (566)
T ss_dssp ------------------
T ss_pred ccceeccccccCCCCCCC
Confidence 468999999999999863
No 39
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.23 E-value=28 Score=23.24 Aligned_cols=32 Identities=19% Similarity=0.474 Sum_probs=20.8
Q ss_pred eeecCCCCcEEcCceeEEeCCcEE-----EEccCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVW 119 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~ 119 (140)
..+|..|+--|-.--.+...++.| +|..|+..
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~ 39 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCR 39 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSC
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCc
Confidence 467888887776432344456677 77777754
No 40
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=44.97 E-value=10 Score=23.77 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=21.7
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMR 123 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp 123 (140)
..+.+|.+|+.|-= +-+|+.||.....+
T Consensus 4 s~mr~C~~CgvYTL----------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 4 MRMKKCPKCGLYTL----------KEICPKCGEKTVIP 31 (60)
T ss_dssp CCCEECTTTCCEES----------SSBCSSSCSBCBCC
T ss_pred hhceeCCCCCCEec----------cccCcCCCCcCCCC
Confidence 35789999998843 45699999887775
No 41
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.34 E-value=18 Score=21.83 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=19.0
Q ss_pred CeeecCCCCcEEcCc-eeEEeCCcEE-----EEccCCCCC
Q 032449 87 GLVRCCCCRGYRNPF-MEFVDNGKSF-----VCNFCGVWM 120 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf-~~~~~~g~~w-----~C~lC~~~N 120 (140)
...+|..|+--|-+- ..+...++.| +|..|+..-
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L 43 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL 43 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBC
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcC
Confidence 346777787766641 1233334554 677776543
No 42
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.03 E-value=6.6 Score=23.86 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMR 123 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp 123 (140)
.....|.+|++- .+...|.|-=||..|.-|
T Consensus 12 ~~k~iCpkC~a~--------~~~gaw~CrKCG~~~lr~ 41 (51)
T 3j21_g 12 FKKYVCLRCGAT--------NPWGAKKCRKCGYKRLRP 41 (51)
T ss_dssp SSEEECTTTCCE--------ECTTCSSCSSSSSCCCEE
T ss_pred hCCccCCCCCCc--------CCCCceecCCCCCccccc
Confidence 356789999887 345789999999985433
No 43
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=43.71 E-value=4.7 Score=22.02 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=10.9
Q ss_pred EEEEccCCCCCCC
Q 032449 110 SFVCNFCGVWMLM 122 (140)
Q Consensus 110 ~w~C~lC~~~N~l 122 (140)
-|+|+-|+..|--
T Consensus 6 DW~C~~C~~~Nfa 18 (33)
T 2k1p_A 6 DWQCKTCSNVNWA 18 (33)
T ss_dssp SCBCSSSCCBCCT
T ss_pred CcccCCCCCcccc
Confidence 5999999998843
No 44
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=43.28 E-value=2.4 Score=25.24 Aligned_cols=30 Identities=27% Similarity=0.733 Sum_probs=24.9
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~ 118 (140)
...|.+|++--.|.-+-...|. ..||.|+.
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 33 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGH-YLCNACGL 33 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCC-CBCSHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCC-ccchHHHH
Confidence 4679999999999877777776 88999984
No 45
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=43.19 E-value=7.3 Score=26.85 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=21.1
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEE-EEccCCCCC
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSF-VCNFCGVWM 120 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w-~C~lC~~~N 120 (140)
...||.+|+...-. ..... .|+-|+..+
T Consensus 72 ~~~~C~~CG~~~e~------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 72 VELECKDCSHVFKP------NALDYGVCEKCHSKN 100 (119)
T ss_dssp CEEECSSSSCEECS------CCSTTCCCSSSSSCC
T ss_pred ceEEcCCCCCEEeC------CCCCCCcCccccCCC
Confidence 45899999877665 23457 899999875
No 46
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.21 E-value=51 Score=20.73 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=28.2
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEE-----EEccCCCCCCCCCCCccccc
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVWMLMRGLSSVEGQ 131 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~N~lp~~~~~~~~ 131 (140)
....+|.+|+-.|-.-. +...++.| +|..|+..-.--.+....|+
T Consensus 23 ~~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~ 72 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAV-VKARDKYRHPECFVCADCNLNLKQKGYFFVEGE 72 (89)
T ss_dssp CSCCBCTTTCCBCCSCC-EESSSCEECTTTCCCSSSCCCTTTSCCEEETTE
T ss_pred CcCCCcccCCCEecccE-EEECCceECccCCEecCCCCCCCCCCeEeECCE
Confidence 34689999999888733 44455666 68888765332234444443
No 47
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.86 E-value=26 Score=22.27 Aligned_cols=45 Identities=20% Similarity=0.515 Sum_probs=28.0
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEE-----EEccCCCCCCCCCCCccccc
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVWMLMRGLSSVEGQ 131 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~N~lp~~~~~~~~ 131 (140)
...+|.+|+-.|-+--.+...++.| +|..|+..-.--.+....|+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~ 63 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGR 63 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCE
Confidence 4579999999997633345566676 68888754322234444444
No 48
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=41.31 E-value=4.3 Score=24.89 Aligned_cols=12 Identities=42% Similarity=1.013 Sum_probs=8.3
Q ss_pred CcEEEEccCCCC
Q 032449 108 GKSFVCNFCGVW 119 (140)
Q Consensus 108 g~~w~C~lC~~~ 119 (140)
-..|+|+.|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 346888888764
No 49
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=41.23 E-value=4.5 Score=26.03 Aligned_cols=33 Identities=33% Similarity=0.575 Sum_probs=19.6
Q ss_pred CeeecCCCCcEEcCc-----------eeEEeCCcEEEEccCCCC
Q 032449 87 GLVRCCCCRGYRNPF-----------MEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf-----------~~~~~~g~~w~C~lC~~~ 119 (140)
..-+|..|+-.-.|- ..|.+--..|+|++|+..
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 357888887444321 223333346999999864
No 50
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=41.10 E-value=34 Score=20.74 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=27.6
Q ss_pred eeecCCCCcEEcC---c-eeEEeCCcEE-----EEccCCCCCCCCCCCccccc
Q 032449 88 LVRCCCCRGYRNP---F-MEFVDNGKSF-----VCNFCGVWMLMRGLSSVEGQ 131 (140)
Q Consensus 88 ~~RC~~C~aYiNP---f-~~~~~~g~~w-----~C~lC~~~N~lp~~~~~~~~ 131 (140)
-.+|..|+-.|-+ . -.+...++.| +|..|+..-.-..+....|+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~ 67 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQ 67 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTE
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCE
Confidence 4799999999997 1 2233445666 78888765432234455554
No 51
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.95 E-value=18 Score=24.55 Aligned_cols=11 Identities=36% Similarity=0.767 Sum_probs=4.9
Q ss_pred eecCCCCcEEc
Q 032449 89 VRCCCCRGYRN 99 (140)
Q Consensus 89 ~RC~~C~aYiN 99 (140)
.+|..|+-.|-
T Consensus 6 ~~C~~C~~~I~ 16 (122)
T 1m3v_A 6 KRCAGCGGKIA 16 (122)
T ss_dssp CCBSSSSSCCC
T ss_pred CCCcccCCEeC
Confidence 44444444443
No 52
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=40.04 E-value=6.3 Score=29.91 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=18.7
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEEEEccCCCCC
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWM 120 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N 120 (140)
..-+|..|+-.... ..-|+|++|++.-
T Consensus 170 ~~~~C~~CG~i~~g-------~~p~~CP~C~~~k 196 (202)
T 1yuz_A 170 KFHLCPICGYIHKG-------EDFEKCPICFRPK 196 (202)
T ss_dssp CEEECSSSCCEEES-------SCCSBCTTTCCBG
T ss_pred cEEEECCCCCEEcC-------cCCCCCCCCCCCh
Confidence 46899999844332 2349999999753
No 53
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=39.90 E-value=31 Score=23.64 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEE-----EEccCCCCCC-C-CCCCccccc
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVWML-M-RGLSSVEGQ 131 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~N~-l-p~~~~~~~~ 131 (140)
....+|..|+-.|-.-..+...++.| +|..|+..-. . ..+....|+
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~ 111 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGM 111 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSC
T ss_pred ccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCE
Confidence 34689999999887644455667788 7888886542 1 245555554
No 54
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.23 E-value=22 Score=22.30 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=28.0
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEE-----EEccCCCCCCCCCCCccccc
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVWMLMRGLSSVEGQ 131 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~N~lp~~~~~~~~ 131 (140)
....+|..|+-.|-+=-.+...++.| +|..|+..-. ..+....|+
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~-~~~~~~~g~ 62 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT-GEYISKDGV 62 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS-SCCEEETTE
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC-CCeEEECCE
Confidence 35689999998886422344556777 8888876432 234444444
No 55
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=38.71 E-value=12 Score=22.76 Aligned_cols=12 Identities=25% Similarity=0.847 Sum_probs=9.8
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
++|+|.+|+..-
T Consensus 2 ~~y~C~~CGyvY 13 (55)
T 2v3b_B 2 RKWQCVVCGFIY 13 (55)
T ss_dssp CEEEETTTCCEE
T ss_pred CcEEeCCCCeEE
Confidence 479999999764
No 56
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.17 E-value=22 Score=21.24 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=18.6
Q ss_pred eeecCCCCcEEcCceeEEeCCcEE-----EEccCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVW 119 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~ 119 (140)
-.+|..|+-.|-.- .+...++.| +|..|+..
T Consensus 5 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~ 40 (69)
T 2cur_A 5 SSGCVKCNKAITSG-GITYQDQPWHADCFVCVTCSKK 40 (69)
T ss_dssp CCCCSSSCCCCCTT-CEEETTEEECTTTTBCTTTCCB
T ss_pred cCCCcccCCEeCcc-eEEECccccccCcCEECCCCCC
Confidence 46777887766542 233445565 57777654
No 57
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=36.11 E-value=11 Score=19.91 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=10.1
Q ss_pred cEEEEccCCCCCCCC
Q 032449 109 KSFVCNFCGVWMLMR 123 (140)
Q Consensus 109 ~~w~C~lC~~~N~lp 123 (140)
.+|.|..|-..|.-.
T Consensus 5 ~~W~C~~CTf~N~~~ 19 (31)
T 1nj3_A 5 AMWACQHCTFMNQPG 19 (31)
T ss_dssp CCEECSSSCCEECSS
T ss_pred ccccCCcccccCCCC
Confidence 467777777777443
No 58
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.99 E-value=23 Score=22.42 Aligned_cols=33 Identities=12% Similarity=0.298 Sum_probs=24.6
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLM 122 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~l 122 (140)
..+.+|..|++ |. .++.....-+|..|+...++
T Consensus 8 LeiL~CP~ck~---~L-~~~~~~g~LvC~~c~~~YPI 40 (67)
T 2jny_A 8 LEVLACPKDKG---PL-RYLESEQLLVNERLNLAYRI 40 (67)
T ss_dssp TCCCBCTTTCC---BC-EEETTTTEEEETTTTEEEEE
T ss_pred HHHhCCCCCCC---cC-eEeCCCCEEEcCCCCccccC
Confidence 35899999999 43 34555678999999977654
No 59
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=35.92 E-value=12 Score=22.48 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=10.0
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
++|+|.+|+..-
T Consensus 2 ~~y~C~~CGyvY 13 (52)
T 1e8j_A 2 DIYVCTVCGYEY 13 (52)
T ss_dssp CCEECSSSCCCC
T ss_pred CcEEeCCCCeEE
Confidence 479999999775
No 60
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.69 E-value=12 Score=17.23 Aligned_cols=12 Identities=33% Similarity=0.817 Sum_probs=9.1
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
+.|.|..|+...
T Consensus 2 k~~~C~~C~k~f 13 (27)
T 2kvh_A 2 KPFSCSLCPQRS 13 (27)
T ss_dssp CCEECSSSSCEE
T ss_pred cCccCCCcChhh
Confidence 458899998754
No 61
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.37 E-value=36 Score=20.29 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=16.0
Q ss_pred eeecCCCCcEEcCceeEEeCCcEE-----EEccCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVW 119 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~ 119 (140)
..+|..|+-.|-.-. +...++.| +|..|+..
T Consensus 5 ~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~~ 40 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRV-IKAMNNSWHPECFRCDLCQEV 40 (70)
T ss_dssp SSBCSSSCCBCCSCC-EEETTEEECTTTSBCSSSCCB
T ss_pred CCcCccCCCEecceE-EEECcccccccCCEeCCCCCc
Confidence 456777776665422 23333443 56666543
No 62
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=35.29 E-value=24 Score=22.50 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=24.6
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLM 122 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~l 122 (140)
..+.+|..|++=+ .++......+|..|+...+|
T Consensus 6 L~iL~CP~ck~~L----~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 6 LDILVCPVCKGRL----EFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCCCBCTTTCCBE----EEETTTTEEEETTTTEEEEE
T ss_pred hhheECCCCCCcC----EEeCCCCEEEcCCCCceecC
Confidence 3579999999933 24555678999999977655
No 63
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.22 E-value=14 Score=18.07 Aligned_cols=13 Identities=23% Similarity=0.670 Sum_probs=9.8
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 5 ~k~~~C~~C~k~f 17 (35)
T 2elx_A 5 SSGYVCALCLKKF 17 (35)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeECCCCcchh
Confidence 3568999998754
No 64
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=34.71 E-value=15 Score=27.16 Aligned_cols=35 Identities=3% Similarity=-0.286 Sum_probs=27.0
Q ss_pred eeecCCCC-----cEEcCceeEEeCC------cEEEEccCCCCCCC
Q 032449 88 LVRCCCCR-----GYRNPFMEFVDNG------KSFVCNFCGVWMLM 122 (140)
Q Consensus 88 ~~RC~~C~-----aYiNPf~~~~~~g------~~w~C~lC~~~N~l 122 (140)
-+.|.+|+ -|||.+-+.+-.| -.|+|-+|++.+.+
T Consensus 37 kvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 37 NIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp EEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred EEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 37899997 5899888777433 35999999988765
No 65
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=33.94 E-value=23 Score=23.57 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=26.1
Q ss_pred CCCeeecCCCCcEEcCcee-----EEeCCcEEEEccCCCCCCC
Q 032449 85 ESGLVRCCCCRGYRNPFME-----FVDNGKSFVCNFCGVWMLM 122 (140)
Q Consensus 85 ~~~~~RC~~C~aYiNPf~~-----~~~~g~~w~C~lC~~~N~l 122 (140)
...++.|..|-.-...+|- -.. ...|.|..|.....+
T Consensus 34 ~g~LL~CD~C~~~fH~~Cl~PpL~~~P-~g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 34 PGDLVMCNQCEFCFHLDCHLPALQDVP-GEEWSCSLCHVLPDL 75 (88)
T ss_dssp SSCCEECTTSSCEECTTSSSTTCCCCC-SSSCCCCSCCCCCSS
T ss_pred CCCEEECCCCCCceecccCCCCCCCCc-CCCcCCccccCCCcc
Confidence 3568999999777665543 223 347999999977644
No 66
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=33.81 E-value=13 Score=20.00 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=9.5
Q ss_pred CcEEEEccCCCCCC
Q 032449 108 GKSFVCNFCGVWML 121 (140)
Q Consensus 108 g~~w~C~lC~~~N~ 121 (140)
+..|.|..|-..|.
T Consensus 6 ~~~W~C~~CT~~N~ 19 (34)
T 3a9j_C 6 GAQWNCTACTFLNH 19 (34)
T ss_dssp CCCEECTTTCCEEC
T ss_pred CCcCCCCCCccccC
Confidence 34677777777774
No 67
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.29 E-value=21 Score=22.40 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=19.5
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEE-----EEccCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVW 119 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~ 119 (140)
....+|.+|+--|-+--.+...++.| +|..|+..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~ 51 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEAT 51 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCB
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCC
Confidence 34577888887775422222334454 67777653
No 68
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.27 E-value=43 Score=20.45 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=26.7
Q ss_pred eeecCCCCcEEcCceeEEeCCcEE-----EEccCCCCCCCCCCCccccc
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVWMLMRGLSSVEGQ 131 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~N~lp~~~~~~~~ 131 (140)
..+|..|+--|-+- .+...++.| +|..|+..-.-..+...+|+
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~ 62 (80)
T 1x3h_A 15 SPKCGGCNRPVLEN-YLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGR 62 (80)
T ss_dssp SCBCTTTCCBCCSS-CEEETTEEECTTTCBCSSSCCBSCSSCCEESSSC
T ss_pred CCccccCCCeecce-eEEECCCeEecCcCChhhCCCCCCCCcEEeECCE
Confidence 47899999888773 244555666 68888765432234444443
No 69
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=32.65 E-value=17 Score=17.80 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=9.7
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 5 ~k~~~C~~C~k~f 17 (35)
T 1srk_A 5 KRPFVCRICLSAF 17 (35)
T ss_dssp CSCEECSSSCCEE
T ss_pred CcCeeCCCCCccc
Confidence 3568999998754
No 70
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=32.59 E-value=12 Score=20.60 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.3
Q ss_pred cEEEEccCCCCCCCC
Q 032449 109 KSFVCNFCGVWMLMR 123 (140)
Q Consensus 109 ~~w~C~lC~~~N~lp 123 (140)
.+|.|..|-..|.-.
T Consensus 6 g~W~C~~C~~~N~~~ 20 (33)
T 3gj3_B 6 GTWDCDTCLVQNKPE 20 (33)
T ss_dssp CCEECTTTCCEECTT
T ss_pred CceeCCcccCCCccc
Confidence 479999999999543
No 71
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.63 E-value=35 Score=20.84 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=22.1
Q ss_pred eeecCCCCcEEcCceeEEeCCcEE-----EEccCCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVWM 120 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~N 120 (140)
-.+|..|+-.|-+- .+...++.| +|..|+..-
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L 51 (80)
T 2cuq_A 15 APRCARCSKTLTQG-GVTYRDQPWHRECLVCTGCQTPL 51 (80)
T ss_dssp SCCCTTTCCCCCSC-CEESSSSEECTTTCBCSSSCCBC
T ss_pred CCcCCCCCCEecCc-EEEECCchhhhhhCCcccCCCcC
Confidence 47899998888763 345556666 688887654
No 72
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=31.46 E-value=19 Score=20.93 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCeeecCCCCcEEcC---ceeEEeCCcEEEEccCCCCCC
Q 032449 86 SGLVRCCCCRGYRNP---FMEFVDNGKSFVCNFCGVWML 121 (140)
Q Consensus 86 ~~~~RC~~C~aYiNP---f~~~~~~g~~w~C~lC~~~N~ 121 (140)
..+..|..|+.-..- ...+-.+.+.|.|..|+....
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 457889999753221 114445567899999997653
No 73
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=30.83 E-value=32 Score=21.75 Aligned_cols=33 Identities=9% Similarity=0.245 Sum_probs=24.3
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLM 122 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~l 122 (140)
..+.+|..|++ |. .++......+|..|+...+|
T Consensus 6 L~iL~CP~ck~---~L-~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 6 LDILVCPVTKG---RL-EYHQDKQELWSRQAKLAYPI 38 (68)
T ss_dssp SCCCBCSSSCC---BC-EEETTTTEEEETTTTEEEEE
T ss_pred hhheECCCCCC---cC-eEeCCCCEEEcCCCCcEecC
Confidence 35789999997 33 24555678999999977655
No 74
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=30.80 E-value=36 Score=20.23 Aligned_cols=20 Identities=20% Similarity=0.625 Sum_probs=15.9
Q ss_pred eecCCCCcEEcCceeEEeCCcEEEEccCC
Q 032449 89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117 (140)
Q Consensus 89 ~RC~~C~aYiNPf~~~~~~g~~w~C~lC~ 117 (140)
..|..|...| |.+|+|..|.
T Consensus 7 ~~Cd~C~~~i---------g~R~~C~~C~ 26 (52)
T 1tot_A 7 YTCNECKHHV---------ETRWHCTVCE 26 (52)
T ss_dssp EEETTTTEEE---------SSEEEESSSS
T ss_pred EECCCCCCCC---------cceEEcCCCC
Confidence 6799998752 4689999996
No 75
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=30.54 E-value=36 Score=20.41 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=20.1
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~ 118 (140)
..+..|..|+.+| + . +.++|..|+.
T Consensus 20 ~~pt~C~~C~~~i-----~-k--qg~kC~~C~~ 44 (59)
T 1rfh_A 20 GGPGWCDLCGREV-----L-R--QALRCANCKF 44 (59)
T ss_dssp SCCEECTTTCSEE-----C-S--CCEECTTTSC
T ss_pred CCCeEchhcchhh-----h-h--CccEeCCCCC
Confidence 5689999999999 1 2 4589999975
No 76
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=30.45 E-value=9.4 Score=25.45 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=10.2
Q ss_pred cEEEEccCCCCCCC
Q 032449 109 KSFVCNFCGVWMLM 122 (140)
Q Consensus 109 ~~w~C~lC~~~N~l 122 (140)
..|.|+||++.+.+
T Consensus 22 t~F~CPfCnh~~sV 35 (85)
T 1wii_A 22 TQFTCPFCNHEKSC 35 (85)
T ss_dssp SCCCCTTTCCSSCE
T ss_pred CeEcCCCCCCCCeE
Confidence 46888888888633
No 77
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=30.11 E-value=4.6 Score=25.54 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=25.6
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEEEEccCCC
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~ 118 (140)
....|.+|++--.|.-.-...|. ..||.||.
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl 36 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGL 36 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHH
T ss_pred CCCcCCCcCCCCCCccCCCCCCC-chhhHHHH
Confidence 45789999999999887777776 78999984
No 78
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.02 E-value=20 Score=17.72 Aligned_cols=13 Identities=38% Similarity=1.068 Sum_probs=9.6
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 7 ~k~~~C~~C~k~f 19 (36)
T 2els_A 7 GKIFTCEYCNKVF 19 (36)
T ss_dssp CCCEECTTTCCEE
T ss_pred CCCEECCCCCcee
Confidence 3568899998754
No 79
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.97 E-value=17 Score=16.75 Aligned_cols=12 Identities=25% Similarity=1.002 Sum_probs=8.9
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
+.|.|..|+...
T Consensus 2 k~~~C~~C~k~f 13 (28)
T 2kvf_A 2 RPYSCSVCGKRF 13 (28)
T ss_dssp CSEECSSSCCEE
T ss_pred cCccCCCCCccc
Confidence 358899998754
No 80
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.84 E-value=17 Score=16.56 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=8.2
Q ss_pred EEEEccCCCCC
Q 032449 110 SFVCNFCGVWM 120 (140)
Q Consensus 110 ~w~C~lC~~~N 120 (140)
.|.|..|+...
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 2m0f_A 2 PLKCRECGKQF 12 (29)
T ss_dssp CEECTTTSCEE
T ss_pred CccCCCCCCcc
Confidence 47899998654
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=29.43 E-value=9.8 Score=23.85 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=25.0
Q ss_pred CCeeecCCCCcEEcCceeE----EeCCcEEEEccCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEF----VDNGKSFVCNFCGVW 119 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~----~~~g~~w~C~lC~~~ 119 (140)
..++.|..|....+.+|-. ......|.|..|...
T Consensus 22 ~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 22 TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 5689999999999876631 122347999999753
No 82
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.41 E-value=42 Score=20.40 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=13.2
Q ss_pred eecCCCCcEEcCceeEEeCCcEEEEccCCCC
Q 032449 89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 89 ~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~ 119 (140)
.+|..|+.-|..-.-+..+ .+-.|..|...
T Consensus 36 F~C~~C~~~L~~~~f~~~~-g~~yC~~cy~~ 65 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLTQN-KEIFCQKCGSG 65 (76)
T ss_dssp CBCTTTCCBCSSSCEEEET-TEEEETTTTCC
T ss_pred CChhhCCCcCCCCceEeEC-CEEECHHHhhh
Confidence 4555555555422112222 24555555543
No 83
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.34 E-value=12 Score=17.14 Aligned_cols=11 Identities=36% Similarity=1.045 Sum_probs=8.5
Q ss_pred EEEEccCCCCC
Q 032449 110 SFVCNFCGVWM 120 (140)
Q Consensus 110 ~w~C~lC~~~N 120 (140)
.|.|..|+...
T Consensus 2 p~~C~~C~k~f 12 (26)
T 2lvu_A 2 PYVCERCGKRF 12 (26)
Confidence 47899998754
No 84
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.13 E-value=19 Score=17.79 Aligned_cols=13 Identities=38% Similarity=0.904 Sum_probs=9.5
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 7 ~k~~~C~~C~k~f 19 (36)
T 2elq_A 7 GKPFKCSLCEYAT 19 (36)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCccCCCCCchh
Confidence 3568899998654
No 85
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=28.70 E-value=61 Score=20.61 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=4.5
Q ss_pred eecCCCCcEE
Q 032449 89 VRCCCCRGYR 98 (140)
Q Consensus 89 ~RC~~C~aYi 98 (140)
.+|..|+--|
T Consensus 6 ~~C~~C~~~I 15 (101)
T 2cup_A 6 SGCVECRKPI 15 (101)
T ss_dssp CBCSSSCCBC
T ss_pred CcCcccCCcc
Confidence 3444444444
No 86
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=28.61 E-value=35 Score=18.81 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=6.8
Q ss_pred EEEccCCCCCCC
Q 032449 111 FVCNFCGVWMLM 122 (140)
Q Consensus 111 w~C~lC~~~N~l 122 (140)
-+|..||....+
T Consensus 22 l~C~aCG~~~~v 33 (36)
T 1k81_A 22 LKCMACGAIRPI 33 (36)
T ss_dssp EEEETTTEEEEE
T ss_pred EEhhcCCCcccc
Confidence 347777665433
No 87
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.47 E-value=20 Score=17.58 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=9.0
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
+.|.|..|+...
T Consensus 8 k~~~C~~C~k~f 19 (36)
T 2elt_A 8 KPYKCPQCSYAS 19 (36)
T ss_dssp CSEECSSSSCEE
T ss_pred CCCCCCCCCccc
Confidence 568899888654
No 88
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.37 E-value=14 Score=22.94 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=23.1
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEE-----EEccCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVW 119 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~ 119 (140)
....+|..|+-.|-.- .+...++.| +|..|+..
T Consensus 13 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~ 50 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTN 50 (79)
T ss_dssp CCCCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCCC
T ss_pred CCCCccccCCCCccCc-EEEECcceeCcCcCeeCCCCCC
Confidence 3468999999988763 344556676 67777754
No 89
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=28.37 E-value=23 Score=23.37 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=10.7
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
..+|+|.+|+..-
T Consensus 25 m~~y~C~vCGyvY 37 (81)
T 2kn9_A 25 YKLFRCIQCGFEY 37 (81)
T ss_dssp CCEEEETTTCCEE
T ss_pred cceEEeCCCCEEE
Confidence 4689999999764
No 90
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.25 E-value=24 Score=17.39 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=8.9
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
+.|.|..|+...
T Consensus 8 k~~~C~~C~k~f 19 (36)
T 2elv_A 8 LLYDCHICERKF 19 (36)
T ss_dssp CCEECSSSCCEE
T ss_pred CCeECCCCCCcc
Confidence 568899888654
No 91
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.25 E-value=23 Score=17.57 Aligned_cols=13 Identities=23% Similarity=1.112 Sum_probs=9.5
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 7 ~k~~~C~~C~k~f 19 (37)
T 2elp_A 7 GRAMKCPYCDFYF 19 (37)
T ss_dssp CCCEECSSSSCEE
T ss_pred CCCeECCCCChhh
Confidence 3568899998754
No 92
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=27.15 E-value=17 Score=22.17 Aligned_cols=13 Identities=15% Similarity=0.486 Sum_probs=10.8
Q ss_pred cEEEEccCCCCCC
Q 032449 109 KSFVCNFCGVWML 121 (140)
Q Consensus 109 ~~w~C~lC~~~N~ 121 (140)
..|+|.-|++.|.
T Consensus 10 D~WkC~~C~k~N~ 22 (53)
T 2cr8_A 10 DEWQCTECKKFNS 22 (53)
T ss_dssp CCEECSSSCCEEC
T ss_pred ceeecccccccCC
Confidence 5799999998874
No 93
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.82 E-value=24 Score=21.64 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=6.2
Q ss_pred eecCCCCcEEc
Q 032449 89 VRCCCCRGYRN 99 (140)
Q Consensus 89 ~RC~~C~aYiN 99 (140)
.+|..|+.-|.
T Consensus 32 F~C~~C~~~L~ 42 (73)
T 1wig_A 32 ALCVRCGQMFA 42 (73)
T ss_dssp SCCSSSCCCCC
T ss_pred CEeCCCCCCCC
Confidence 45666655554
No 94
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=26.79 E-value=29 Score=21.82 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=20.0
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~ 118 (140)
..+..|..|+.+| ....++|..|+.
T Consensus 33 ~~pt~C~~C~~~l--------~~qG~kC~~C~~ 57 (72)
T 2fnf_X 33 GGPGWCDLCGREV--------LRQALRCANCKF 57 (72)
T ss_dssp SSCCBCTTTSSBC--------SSCCEECTTSSC
T ss_pred CCCcchhhhhHHH--------HhCcCccCCCCC
Confidence 5688999999999 134589999975
No 95
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.77 E-value=53 Score=20.08 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=21.4
Q ss_pred eeecCCCCcEEcCcee-EEeCCcEE-----EEccCCCCC
Q 032449 88 LVRCCCCRGYRNPFME-FVDNGKSF-----VCNFCGVWM 120 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~-~~~~g~~w-----~C~lC~~~N 120 (140)
..+|.+|+..|-+--. +...++.| +|..|+..-
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L 53 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVI 53 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCC
T ss_pred CCcCccCCcccccCceEEEECccccccccCchhhCCCcc
Confidence 4689999988875322 34455666 677777543
No 96
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=26.54 E-value=22 Score=16.32 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=8.3
Q ss_pred EEEEccCCCCC
Q 032449 110 SFVCNFCGVWM 120 (140)
Q Consensus 110 ~w~C~lC~~~N 120 (140)
.+.|..|+...
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 1rik_A 2 KFACPECPKRF 12 (29)
T ss_dssp CEECSSSSCEE
T ss_pred CccCCCCCchh
Confidence 47899998654
No 97
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=26.43 E-value=18 Score=21.59 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=10.5
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
..|+|.-|++.|
T Consensus 12 D~WkC~~C~~~N 23 (46)
T 2c6a_A 12 DYWKCTSCNEMN 23 (46)
T ss_dssp GCEECTTTCCEE
T ss_pred ceEecccccccC
Confidence 579999999887
No 98
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.42 E-value=21 Score=16.49 Aligned_cols=12 Identities=17% Similarity=0.595 Sum_probs=8.8
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
+.|.|..|+...
T Consensus 2 k~~~C~~C~k~f 13 (27)
T 2kvg_A 2 APYRCPLCRAGC 13 (27)
T ss_dssp CTEEETTTTEEE
T ss_pred cCcCCCCCCccc
Confidence 358899998653
No 99
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.37 E-value=29 Score=17.40 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=9.4
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 7 ~k~~~C~~C~k~f 19 (37)
T 2elm_A 7 GHLYYCSQCHYSS 19 (37)
T ss_dssp SCEEECSSSSCEE
T ss_pred CcCeECCCCCccc
Confidence 3568888888653
No 100
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=26.34 E-value=21 Score=26.22 Aligned_cols=14 Identities=29% Similarity=0.845 Sum_probs=11.4
Q ss_pred CcEEEEccCCCCCC
Q 032449 108 GKSFVCNFCGVWML 121 (140)
Q Consensus 108 g~~w~C~lC~~~N~ 121 (140)
...|+|..||..-.
T Consensus 136 ~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 136 KKVYICPICGYTAV 149 (170)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CCeeEeCCCCCeeC
Confidence 47899999998753
No 101
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.30 E-value=23 Score=16.20 Aligned_cols=12 Identities=33% Similarity=1.121 Sum_probs=8.9
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
+.|.|..|+...
T Consensus 2 k~~~C~~C~~~f 13 (30)
T 2m0d_A 2 KPYQCDYCGRSF 13 (30)
T ss_dssp CCEECTTTCCEE
T ss_pred cCccCCCCCccc
Confidence 358899998754
No 102
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=26.20 E-value=16 Score=22.21 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=23.2
Q ss_pred CCCeeecCCCCcEEcCceeEE----eCCcEEEEccCCCC
Q 032449 85 ESGLVRCCCCRGYRNPFMEFV----DNGKSFVCNFCGVW 119 (140)
Q Consensus 85 ~~~~~RC~~C~aYiNPf~~~~----~~g~~w~C~lC~~~ 119 (140)
...++.|..|..-.+.+|--. .....|.|..|...
T Consensus 20 ~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 20 GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 357899999987766443211 12358999999653
No 103
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.95 E-value=27 Score=22.12 Aligned_cols=32 Identities=19% Similarity=0.525 Sum_probs=23.9
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCC
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLM 122 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~l 122 (140)
.+.+|..|++ |. .++......+|..|+...+|
T Consensus 7 ~iL~CP~ck~---~L-~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 7 EILVCPLCKG---PL-VFDKSKDELICKGDRLAFPI 38 (68)
T ss_dssp EECBCTTTCC---BC-EEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCC---cC-eEeCCCCEEEcCCCCcEecC
Confidence 4789999997 33 24555678999999977655
No 104
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=25.64 E-value=28 Score=21.12 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=20.9
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~ 119 (140)
+.+|..|+.- + ..++....-++|.-||..
T Consensus 11 ~~~Cp~C~~~--~-lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 11 RVTCPNHPDA--I-LVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CCSBTTBSSS--C-CEECSSSCCEECTTTCCE
T ss_pred cccCcCCCCC--c-eeEeCCCCeEEeCCCCCE
Confidence 4589999862 2 445666678999999864
No 105
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=25.47 E-value=8.6 Score=26.86 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=22.1
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLM 122 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~l 122 (140)
+.=|..|+..|-|--.-......|.|.-|+....+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~ 38 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEA 38 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEEC
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeec
Confidence 45688888888654311123457888888876544
No 106
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=25.43 E-value=38 Score=22.16 Aligned_cols=22 Identities=0% Similarity=-0.070 Sum_probs=17.8
Q ss_pred EcCceeEEeCCcEEEEccCCCC
Q 032449 98 RNPFMEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 98 iNPf~~~~~~g~~w~C~lC~~~ 119 (140)
|.-|-++.+...+|+|.|..-.
T Consensus 36 lC~ydKV~R~KnkWKc~LKdGi 57 (76)
T 1nvp_C 36 VCQYDKIHRSKNKWKFHLKDGI 57 (76)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEeccCceEEEEEeccE
Confidence 4458999999999999987643
No 107
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=25.17 E-value=2.8 Score=35.17 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=24.7
Q ss_pred CCeeecCCCCcE----EcCceeEEeCCcEEEEccCCCCCCCCCCC
Q 032449 86 SGLVRCCCCRGY----RNPFMEFVDNGKSFVCNFCGVWMLMRGLS 126 (140)
Q Consensus 86 ~~~~RC~~C~aY----iNPf~~~~~~g~~w~C~lC~~~N~lp~~~ 126 (140)
..|.|-..|.=. +.-|........+|+|++|+..-.+..+.
T Consensus 260 ~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 260 KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 457787777632 11122233456799999999876554443
No 108
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=25.09 E-value=27 Score=19.06 Aligned_cols=13 Identities=31% Similarity=0.979 Sum_probs=10.0
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|.+|+...
T Consensus 5 ~kp~~C~~C~k~F 17 (48)
T 3iuf_A 5 DKPYACDICGKRY 17 (48)
T ss_dssp TSCEECTTTCCEE
T ss_pred CcCEECCCcCccc
Confidence 4678999999754
No 109
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=25.04 E-value=39 Score=20.38 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=19.3
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~ 119 (140)
.-.|.+|++-+ |+. ....+|.|.-|+..
T Consensus 18 ~~fCPkCG~~~--~ma--~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGV--FLA--EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTC--CCE--ECSSEEECTTTCCC
T ss_pred cccCcCCCCce--eEe--ccCCEEECCCCCCE
Confidence 35688999844 332 22358999999875
No 110
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.94 E-value=66 Score=20.20 Aligned_cols=45 Identities=24% Similarity=0.402 Sum_probs=26.5
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEE-----EEccCCCCCCCCCCCccccc
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVWMLMRGLSSVEGQ 131 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~N~lp~~~~~~~~ 131 (140)
....+|..|+-.|..-. +...++.| +|..|+..-.-..+....|+
T Consensus 23 ~~~~~C~~C~~~I~~~~-v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~ 72 (90)
T 2dar_A 23 KRTPMCAHCNQVIRGPF-LVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGA 72 (90)
T ss_dssp TCCCBBSSSCCBCCSCE-EEETTEEECTTTCBCSSSCCBCSSSCBEESSSC
T ss_pred CCCCCCccCCCEecceE-EEECCccccccCCccCCCCCCCCCCEeEeECCE
Confidence 34578999998885432 33455666 78888765432234444443
No 111
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=24.86 E-value=25 Score=19.43 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCCCC
Q 032449 109 KSFVCNFCGVWMLMR 123 (140)
Q Consensus 109 ~~w~C~lC~~~N~lp 123 (140)
..|.|..|...|...
T Consensus 6 G~W~C~~C~v~N~~~ 20 (34)
T 3gj5_B 6 GSWDCEVCLVQNKAD 20 (34)
T ss_dssp CCEECTTTCCEECSS
T ss_pred CceECCeeEeECccc
Confidence 479999999988543
No 112
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.74 E-value=22 Score=21.39 Aligned_cols=19 Identities=26% Similarity=0.669 Sum_probs=9.0
Q ss_pred eeEEeCCcEEEEccCCCCC
Q 032449 102 MEFVDNGKSFVCNFCGVWM 120 (140)
Q Consensus 102 ~~~~~~g~~w~C~lC~~~N 120 (140)
|.|......-+|-+|+..-
T Consensus 17 CT~~N~~~~~~C~~C~~pr 35 (53)
T 2d9g_A 17 CTFRNSAEAFKCMMCDVRK 35 (53)
T ss_dssp SCCEECSSCSSCSSSCCCC
T ss_pred CccCCCCCCCccCCCCCcC
Confidence 3344444455555555443
No 113
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=24.38 E-value=40 Score=22.18 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=17.7
Q ss_pred EcCceeEEeCCcEEEEccCCCC
Q 032449 98 RNPFMEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 98 iNPf~~~~~~g~~w~C~lC~~~ 119 (140)
|.-|-++.+...+|+|.|..-.
T Consensus 38 lC~ydKV~R~KnKWKc~LKdGi 59 (79)
T 1nh2_C 38 LCLYDKVTRTKARWKCSLKDGV 59 (79)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEeeecceEEEEEeeeE
Confidence 4458999999999999997643
No 114
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=24.29 E-value=26 Score=19.40 Aligned_cols=10 Identities=30% Similarity=0.716 Sum_probs=8.0
Q ss_pred EEEEccCCCC
Q 032449 110 SFVCNFCGVW 119 (140)
Q Consensus 110 ~w~C~lC~~~ 119 (140)
-|+|++|.+.
T Consensus 5 GFiCP~C~~~ 14 (34)
T 3mjh_B 5 GFICPQCMKS 14 (34)
T ss_dssp EEECTTTCCE
T ss_pred ccCCcHHHHH
Confidence 4999999754
No 115
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.17 E-value=29 Score=17.69 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=9.7
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 8 ~k~~~C~~C~k~f 20 (41)
T 2ept_A 8 QRVYECQECGKSF 20 (41)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCCCCCCc
Confidence 3568999998754
No 116
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=24.16 E-value=28 Score=17.84 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=9.8
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 8 ~k~~~C~~C~k~f 20 (42)
T 2el5_A 8 ENPYECSECGKAF 20 (42)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCccCCCcChhh
Confidence 4568999998754
No 117
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=24.01 E-value=25 Score=26.10 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=10.2
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
.+|+|..||..-
T Consensus 154 ~~~~C~~CG~~~ 165 (191)
T 1lko_A 154 TKWRCRNCGYVH 165 (191)
T ss_dssp EEEEETTTCCEE
T ss_pred ceEEECCCCCEe
Confidence 589999999874
No 118
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=23.67 E-value=13 Score=21.59 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=22.9
Q ss_pred CCeeecCCCCcEEcCceeE----EeCCcEEEEccCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEF----VDNGKSFVCNFCGVW 119 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~----~~~g~~w~C~lC~~~ 119 (140)
..++.|..|....+.+|-- ......|.|..|...
T Consensus 13 ~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 13 DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 4689999998777755431 112348999999653
No 119
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=23.14 E-value=29 Score=17.55 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=9.3
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
+.|.|..|+...
T Consensus 5 k~~~C~~C~k~f 16 (39)
T 1njq_A 5 RSYTCSFCKREF 16 (39)
T ss_dssp SSEECTTTCCEE
T ss_pred CceECCCCCccc
Confidence 568999998754
No 120
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.10 E-value=29 Score=18.14 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=9.8
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|.+|+...
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytf_A 10 EKPFECSECQKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCcCCCCCCccc
Confidence 4568999998654
No 121
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.88 E-value=30 Score=17.84 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=9.8
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|.+|+...
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2eof_A 10 EKPYECNECQKAF 22 (44)
T ss_dssp CCSEECTTTCCEE
T ss_pred CCCeECCCCCccc
Confidence 4568999998754
No 122
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.87 E-value=16 Score=16.79 Aligned_cols=11 Identities=45% Similarity=0.954 Sum_probs=8.0
Q ss_pred EEEEccCCCCC
Q 032449 110 SFVCNFCGVWM 120 (140)
Q Consensus 110 ~w~C~lC~~~N 120 (140)
.|.|..|+...
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 1ard_A 2 SFVCEVCTRAF 12 (29)
T ss_dssp CCBCTTTCCBC
T ss_pred CeECCCCCccc
Confidence 46788888754
No 123
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.87 E-value=17 Score=17.86 Aligned_cols=12 Identities=33% Similarity=1.005 Sum_probs=8.8
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
+.|.|..|+...
T Consensus 8 ~~~~C~~C~k~f 19 (36)
T 2elr_A 8 KTHLCDMCGKKF 19 (36)
T ss_dssp SSCBCTTTCCBC
T ss_pred CCeecCcCCCCc
Confidence 567888888654
No 124
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=22.81 E-value=32 Score=17.51 Aligned_cols=13 Identities=23% Similarity=0.784 Sum_probs=9.6
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 9 ~~~~~C~~C~k~f 21 (42)
T 2epc_A 9 ETPYLCGQCGKSF 21 (42)
T ss_dssp SCCEECSSSCCEE
T ss_pred CCCeECCCCCccc
Confidence 4568899998654
No 125
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=22.74 E-value=3.1 Score=34.77 Aligned_cols=42 Identities=12% Similarity=0.327 Sum_probs=24.6
Q ss_pred CCeeecCCCCcE----EcCceeEEeCCcEEEEccCCCCCCCCCCCc
Q 032449 86 SGLVRCCCCRGY----RNPFMEFVDNGKSFVCNFCGVWMLMRGLSS 127 (140)
Q Consensus 86 ~~~~RC~~C~aY----iNPf~~~~~~g~~w~C~lC~~~N~lp~~~~ 127 (140)
..|.|-..|.=. +.-|........+|+|++|++.-.+..+..
T Consensus 226 ~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 226 TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 456776666532 112222334467999999998775544433
No 126
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.64 E-value=18 Score=18.00 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=8.4
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
+.|.|..|+...
T Consensus 10 k~~~C~~C~k~f 21 (37)
T 1p7a_A 10 KPFQCPDCDRSF 21 (37)
T ss_dssp SSBCCTTTCCCB
T ss_pred CCccCCCCCccc
Confidence 457788887654
No 127
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=22.55 E-value=12 Score=23.09 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=25.7
Q ss_pred CCeeecCCCCcEEcCceeE----EeCCcEEEEccCCCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEF----VDNGKSFVCNFCGVWML 121 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~----~~~g~~w~C~lC~~~N~ 121 (140)
..++.|..|..-.+.+|-- ......|.|+.|.....
T Consensus 18 g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 18 GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 5789999998887766543 11235899999976553
No 128
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.47 E-value=33 Score=17.97 Aligned_cols=14 Identities=21% Similarity=0.672 Sum_probs=10.3
Q ss_pred CCcEEEEccCCCCC
Q 032449 107 NGKSFVCNFCGVWM 120 (140)
Q Consensus 107 ~g~~w~C~lC~~~N 120 (140)
+.+.|.|..|+...
T Consensus 9 ~~~~~~C~~C~k~F 22 (46)
T 2emi_A 9 GERHYECSECGKAF 22 (46)
T ss_dssp SCCCEECSSSCCEE
T ss_pred CCCCCCCCCCCccc
Confidence 34678999998754
No 129
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=28.09 E-value=18 Score=16.70 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=9.0
Q ss_pred cEEEEccCCCCC
Q 032449 109 KSFVCNFCGVWM 120 (140)
Q Consensus 109 ~~w~C~lC~~~N 120 (140)
+.|.|..|+...
T Consensus 2 k~~~C~~C~k~f 13 (30)
T 2lvr_A 2 KPYVCIHCQRQF 13 (30)
Confidence 358899998764
No 130
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.04 E-value=18 Score=16.73 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=8.4
Q ss_pred EEEEccCCCCC
Q 032449 110 SFVCNFCGVWM 120 (140)
Q Consensus 110 ~w~C~lC~~~N 120 (140)
.|.|..|+...
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 2lvt_A 2 PCQCVMCGKAF 12 (29)
Confidence 47899998754
No 131
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.39 E-value=33 Score=18.04 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=9.9
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2ytp_A 10 ERHYECSECGKAF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCcCCccc
Confidence 4678999998654
No 132
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.33 E-value=27 Score=17.24 Aligned_cols=13 Identities=31% Similarity=0.861 Sum_probs=9.6
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 7 ~k~~~C~~C~k~f 19 (37)
T 2elo_A 7 GRSYSCPVCEKSF 19 (37)
T ss_dssp CCCCEETTTTEEC
T ss_pred CCCcCCCCCCCcc
Confidence 3568899998654
No 133
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=22.16 E-value=65 Score=21.16 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=19.3
Q ss_pred Cceecc--CCCCeeecCCCCcEEcCceeEEe
Q 032449 78 IPVVDF--GESGLVRCCCCRGYRNPFMEFVD 106 (140)
Q Consensus 78 vp~v~~--~~~~~~RC~~C~aYiNPf~~~~~ 106 (140)
.|.+.+ |+.-+.||+.|+=|+--.++++.
T Consensus 22 ~p~~~f~eGeDVLarwsDGlfYLGTI~kV~~ 52 (79)
T 2m0o_A 22 GPRPRLWEGQDVLARWTDGLLYLGTIKKVDS 52 (79)
T ss_dssp SCCCCCCTTCEEEBCCTTSCCCEEEEEEEET
T ss_pred CCcceeccCCEEEEEecCCCEEeEEEEEecc
Confidence 444444 45567999999999875554443
No 134
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=22.11 E-value=83 Score=17.78 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=20.1
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~ 119 (140)
..+..|..|+..|- +.++|..|+..
T Consensus 12 ~~pt~C~~C~~~l~---------qG~~C~~C~~~ 36 (52)
T 1faq_A 12 LKLAFCDICQKFLL---------NGFRCQTCGYK 36 (52)
T ss_dssp SSCEECTTSSSEEC---------SEEECTTTTCC
T ss_pred CCCcCCCCcccccc---------cCCEeCCCCCe
Confidence 45899999999883 46999999843
No 135
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.09 E-value=9.7 Score=29.54 Aligned_cols=33 Identities=24% Similarity=0.601 Sum_probs=18.9
Q ss_pred ecCCCCcEEcC--ceeEEeCCcEEEEccCCCCCCC
Q 032449 90 RCCCCRGYRNP--FMEFVDNGKSFVCNFCGVWMLM 122 (140)
Q Consensus 90 RC~~C~aYiNP--f~~~~~~g~~w~C~lC~~~N~l 122 (140)
+|..|+--|+| |..+-.+..-..|+-||.+=..
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEEC
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEe
Confidence 67777777766 3333334455777777755433
No 136
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.88 E-value=34 Score=17.83 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=9.7
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|.+|+...
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eow_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp CCCEECTTSCCEE
T ss_pred CCCeeccccCChh
Confidence 4568999998754
No 137
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.83 E-value=22 Score=22.39 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=19.8
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWML 121 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~ 121 (140)
.-+|.+|++-+..- .+..-+|.-||..-.
T Consensus 21 ~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 21 IYLCADCGARNTIQ-----AKEVIRCRECGHRVM 49 (63)
T ss_dssp CCBCSSSCCBCCCC-----SSSCCCCSSSCCCCC
T ss_pred EEECCCCCCeeecC-----CCCceECCCCCcEEE
Confidence 46788888777632 345688888887653
No 138
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.68 E-value=13 Score=22.15 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=22.7
Q ss_pred CCeeecCCCCcEEcCceeE----EeCCcEEEEccCC
Q 032449 86 SGLVRCCCCRGYRNPFMEF----VDNGKSFVCNFCG 117 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~----~~~g~~w~C~lC~ 117 (140)
..++.|..|....+.+|-- ......|.|+.|.
T Consensus 19 g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 19 GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 5689999999888766533 1123579999884
No 139
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.43 E-value=35 Score=17.78 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=9.8
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2yrj_A 10 EKPYRCGECGKAF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCCCCCcc
Confidence 4678999998654
No 140
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=21.26 E-value=18 Score=19.89 Aligned_cols=11 Identities=36% Similarity=1.050 Sum_probs=5.1
Q ss_pred cEEEEccCCCC
Q 032449 109 KSFVCNFCGVW 119 (140)
Q Consensus 109 ~~w~C~lC~~~ 119 (140)
+.|.|..|+..
T Consensus 3 ~~~~C~~C~~~ 13 (57)
T 3uk3_C 3 SSRECSYCGKF 13 (57)
T ss_dssp --CBCTTTCCB
T ss_pred CCccCCCCcch
Confidence 34556666544
No 141
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=21.24 E-value=43 Score=21.91 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=29.0
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCC--CCCcccccccccc
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMR--GLSSVEGQLNLLL 136 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp--~~~~~~~~~~~~~ 136 (140)
.-+.||..|.... .+..+--|+-||...... -..++.|...+-|
T Consensus 13 ~~iLrC~aCf~~t-------~~~~k~FCp~CGn~TL~Rvsvsvd~~G~~~~hl 58 (79)
T 2con_A 13 SYILRCHGCFKTT-------SDMNRVFCGHCGNKTLKKVSVTINDDGTLHMHF 58 (79)
T ss_dssp CEEEECSSSCCEE-------SCSSCCSCSSSCCSCCEEEECBCCSSCCCBCCC
T ss_pred eeeeEecccceEC-------CCcccccccccCcccceEEEEEECCCCcEEEec
Confidence 5689999998764 455678899999854332 2233447665544
No 142
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.18 E-value=34 Score=17.85 Aligned_cols=14 Identities=36% Similarity=0.892 Sum_probs=10.1
Q ss_pred CCcEEEEccCCCCC
Q 032449 107 NGKSFVCNFCGVWM 120 (140)
Q Consensus 107 ~g~~w~C~lC~~~N 120 (140)
+.+.|.|..|+...
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2yts_A 9 GEKPYICNECGKSF 22 (46)
T ss_dssp SCCSEECSSSCCEE
T ss_pred CCcCEECCCCChhh
Confidence 34568999998654
No 143
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.02 E-value=34 Score=17.91 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=9.8
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|.+|+...
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ep3_A 10 EKPYRCAECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeECCCCCchh
Confidence 4568999998754
No 144
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.98 E-value=36 Score=17.81 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=10.3
Q ss_pred CCcEEEEccCCCCC
Q 032449 107 NGKSFVCNFCGVWM 120 (140)
Q Consensus 107 ~g~~w~C~lC~~~N 120 (140)
+.+.|.|.+|+...
T Consensus 9 ~~k~~~C~~C~k~F 22 (46)
T 2emy_A 9 GENPYECHECGKAF 22 (46)
T ss_dssp SSCCEECSSSCCEE
T ss_pred CCcCcCCCCCCccc
Confidence 34678999998754
No 145
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.92 E-value=75 Score=22.96 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=27.2
Q ss_pred CeeecCCCCcEEcCceeEEeCCcEE-----EEccCCCCCCCCCCCccccc
Q 032449 87 GLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGVWMLMRGLSSVEGQ 131 (140)
Q Consensus 87 ~~~RC~~C~aYiNPf~~~~~~g~~w-----~C~lC~~~N~lp~~~~~~~~ 131 (140)
...+|..|+--|-+--.+...++.| +|..|+..-.-..+....|+
T Consensus 114 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~ 163 (192)
T 1b8t_A 114 GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGE 163 (192)
T ss_dssp CCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTE
T ss_pred CCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCE
Confidence 3578999999886522234556666 78888765422234444443
No 146
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=20.90 E-value=59 Score=24.58 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=19.7
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLM 122 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~l 122 (140)
-.+|..|++= .-|--+ ..| .|.|+-|+..-.+
T Consensus 14 ~~~CP~Cg~~-d~~~~~-~dg-~~~C~~Cg~~~~~ 45 (255)
T 1nui_A 14 HIPCDNCGSS-DGNSLF-SDG-HTFCYVCEKWTAG 45 (255)
T ss_dssp EECCSSSCCS-SCEEEE-TTS-CEEETTTCCEEC-
T ss_pred CCcCCCCCCC-CCceEe-CCC-CeecccCCCcCCC
Confidence 4789999871 112222 345 5999999986543
No 147
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=20.90 E-value=52 Score=18.59 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=11.0
Q ss_pred CCeeecCCCCcEEcC
Q 032449 86 SGLVRCCCCRGYRNP 100 (140)
Q Consensus 86 ~~~~RC~~C~aYiNP 100 (140)
....+|.+|+..|..
T Consensus 7 ~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCCcccccccCcCCc
Confidence 346789999888764
No 148
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.86 E-value=34 Score=17.44 Aligned_cols=13 Identities=31% Similarity=0.887 Sum_probs=9.6
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|..|+...
T Consensus 9 ~k~~~C~~C~k~f 21 (42)
T 2en2_A 9 EKPYKCETCGARF 21 (42)
T ss_dssp SCSEECTTTCCEE
T ss_pred CCCEeCCCcChhh
Confidence 4568899998654
No 149
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.84 E-value=53 Score=26.58 Aligned_cols=30 Identities=27% Similarity=0.636 Sum_probs=23.0
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~ 118 (140)
..+|..|+.|- +-..+|....-.+|.-||.
T Consensus 21 ~~~Cp~C~~~~-~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 21 VLTCPECKVYP-PKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp -CCCSSCCCSS-CCEEEEGGGTEEEETTTCB
T ss_pred CCcCCCCCCCC-CceeEECCCCcEEeCCCCC
Confidence 46899999863 4455677777999999994
No 150
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=20.70 E-value=36 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=20.5
Q ss_pred CCeeecCCCCcEEcCceeEEeCCcEEEEccCCCCC
Q 032449 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWM 120 (140)
Q Consensus 86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N 120 (140)
.-..||.+|+++.-|= +..|+-|+..+
T Consensus 45 L~~~rC~~CG~~~~PP--------r~~Cp~C~s~~ 71 (145)
T 3irb_A 45 IIGSKCSKCGRIFVPA--------RSYCEHCFVKI 71 (145)
T ss_dssp CEEEECTTTCCEEESC--------CSEETTTTEEC
T ss_pred EEEEEeCCCCcEEcCc--------hhhCcCCCCCc
Confidence 4478999999987663 35688898765
No 151
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.49 E-value=19 Score=16.37 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=8.1
Q ss_pred EEEEccCCCCC
Q 032449 110 SFVCNFCGVWM 120 (140)
Q Consensus 110 ~w~C~lC~~~N 120 (140)
.|.|..|+...
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 2m0e_A 2 EHKCPHCDKKF 12 (29)
T ss_dssp CCCCSSCCCCC
T ss_pred CCcCCCCCccc
Confidence 46788888764
No 152
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.45 E-value=39 Score=17.74 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=9.7
Q ss_pred CcEEEEccCCCCC
Q 032449 108 GKSFVCNFCGVWM 120 (140)
Q Consensus 108 g~~w~C~lC~~~N 120 (140)
.+.|.|.+|+...
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2yto_A 10 EKPYKCSDCGKAF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCEECcccCCcc
Confidence 4568999998754
No 153
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=20.44 E-value=69 Score=22.92 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=24.4
Q ss_pred eecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCCC
Q 032449 89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRG 124 (140)
Q Consensus 89 ~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp~ 124 (140)
+.|..|+.-=--.. .+...-.-+|..||....+..
T Consensus 103 VlC~~C~sPdT~l~-k~~r~~~l~C~ACGa~~~V~~ 137 (138)
T 1nee_A 103 VICHECNRPDTRII-REGRISLLKCEACGAKAPLKN 137 (138)
T ss_dssp HHHTCCSSCSSCCE-EETTTTEEECSTTSCCCCSCC
T ss_pred EECCCCCCcCcEEE-EcCCeEEEEccCCCCCcccCC
Confidence 78999996422233 344556789999999887653
No 154
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.36 E-value=19 Score=16.54 Aligned_cols=11 Identities=18% Similarity=0.915 Sum_probs=8.2
Q ss_pred EEEEccCCCCC
Q 032449 110 SFVCNFCGVWM 120 (140)
Q Consensus 110 ~w~C~lC~~~N 120 (140)
.|.|..|+...
T Consensus 2 ~~~C~~C~k~f 12 (30)
T 1klr_A 2 TYQCQYCEFRS 12 (30)
T ss_dssp CCCCSSSSCCC
T ss_pred CccCCCCCCcc
Confidence 36788898765
No 155
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=20.33 E-value=28 Score=25.52 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=21.2
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWM 120 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N 120 (140)
..+|.+|++.|=|- + +..+|+.|+..-
T Consensus 140 ~a~~~~~g~~m~~~-----~-~~~~cp~~g~~e 166 (179)
T 3m7n_A 140 RALCSNCKTEMVRE-----G-DILKCPECGRVE 166 (179)
T ss_dssp ECBCTTTCCBCEEC-----S-SSEECSSSCCEE
T ss_pred EecccccCCceEEC-----C-CEEECCCCCCEE
Confidence 47899999888552 2 689999999765
No 156
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.30 E-value=86 Score=18.48 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=16.0
Q ss_pred eecCCCCcEEcCc-eeEEeCCcEE-----EEccCCCC
Q 032449 89 VRCCCCRGYRNPF-MEFVDNGKSF-----VCNFCGVW 119 (140)
Q Consensus 89 ~RC~~C~aYiNPf-~~~~~~g~~w-----~C~lC~~~ 119 (140)
.+|..|+-.|-+- ..+...++.| +|..|+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 42 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQP 42 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCc
Confidence 4677777666642 1222334443 46666543
No 157
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.16 E-value=24 Score=23.49 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=24.6
Q ss_pred CCCeeecCCCCcE-EcCceeEEe-CCcEEEEccCCC
Q 032449 85 ESGLVRCCCCRGY-RNPFMEFVD-NGKSFVCNFCGV 118 (140)
Q Consensus 85 ~~~~~RC~~C~aY-iNPf~~~~~-~g~~w~C~lC~~ 118 (140)
.-.++.|+.|++- ++-.|.... ....|.|+.|..
T Consensus 43 ~W~L~lC~~Cgs~gtH~~Cs~l~~~~~~weC~~C~~ 78 (85)
T 1weq_A 43 RWRLILCATCGSHGTHRDCSSLRPNSKKWECNECLP 78 (85)
T ss_dssp TTBCEECSSSCCCEECSGGGTCCTTCSCCCCTTTSC
T ss_pred CEEEEeCcccCCchhHHHHhCCcCCCCCEECCcCcc
Confidence 3568999999885 345555542 467899999984
No 158
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.11 E-value=30 Score=24.69 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=17.3
Q ss_pred eeecCCCCcEEcCceeEEeCCcEEEEccCCCC
Q 032449 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVW 119 (140)
Q Consensus 88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~ 119 (140)
.-||..|+....-. ...-.|+.||..
T Consensus 132 ~y~C~~Cg~~~~~~------~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL------PPGGVCPDCGSK 157 (165)
T ss_dssp CEEESSSCCEESSC------CGGGBCTTTCCB
T ss_pred EEECCCCCCcccCC------CCCCcCCCCCCc
Confidence 46888888766533 223379999875
Done!