BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032451
         (140 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
           Cathepsin E
          Length = 351

 Score = 26.9 bits (58), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 88  AKKVLLEQLIFSPWINFLFMTYFGLVVEGKP 118
            +   ++Q    P IN+L M YFG +  G P
Sbjct: 4   TESCSMDQSAKEPLINYLDMEYFGTISIGSP 34


>pdb|3G8R|A Chain A, Crystal Structure Of Putative Spore Coat Polysaccharide
          Biosynthesis Protein E From Chromobacterium Violaceum
          Atcc 12472
 pdb|3G8R|B Chain B, Crystal Structure Of Putative Spore Coat Polysaccharide
          Biosynthesis Protein E From Chromobacterium Violaceum
          Atcc 12472
          Length = 350

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 59 FDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKK 90
          FDFG+ + + + L+ F+ + FKGRD+    K+
Sbjct: 39 FDFGFKLQYRN-LDTFIHSSFKGRDDVKYVKR 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,820,400
Number of Sequences: 62578
Number of extensions: 126090
Number of successful extensions: 292
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 4
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)