Query 032451
Match_columns 140
No_of_seqs 160 out of 1042
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 23:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 54.8 5.1 0.00017 25.4 1.4 26 33-58 31-57 (118)
2 1xrd_A LH-1, light-harvesting 41.8 24 0.00082 19.8 2.7 30 47-76 7-42 (52)
3 4aw6_A CAAX prenyl protease 1 19.4 2.8E+02 0.0097 22.4 6.5 48 58-106 132-186 (482)
4 2kfe_A Meucin-24; alpha-helix, 17.7 81 0.0028 15.0 1.7 13 120-132 4-16 (26)
5 2cmx_A ORF F-112, F112, hypoth 17.5 46 0.0016 21.4 1.1 25 34-58 32-57 (118)
6 1fs1_B SKP1, cyclin A/CDK2-ass 17.0 1.6E+02 0.0056 19.2 3.9 26 99-125 107-132 (141)
7 2qho_B E3 ubiquitin-protein li 16.1 95 0.0033 17.2 2.0 17 113-129 19-35 (53)
8 1p58_D Envelope protein M; fla 15.6 2E+02 0.0068 17.1 4.0 34 8-42 28-61 (75)
9 1m93_A Serine proteinase inhib 14.5 29 0.001 19.2 -0.4 29 95-123 15-43 (55)
10 1rh5_B Preprotein translocase 14.0 1.2E+02 0.0041 18.1 2.3 27 46-72 30-56 (74)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=54.82 E-value=5.1 Score=25.44 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=20.2
Q ss_pred HHHHHHHHhh-hCCCchhHHHHHHHHH
Q 032451 33 GCSDAIAQKI-SGVKKLQLKRLLLLML 58 (140)
Q Consensus 33 ~~gD~laQ~~-~~~~~~D~~R~~~~~~ 58 (140)
.+-|++||.- ..+..++..|++++..
T Consensus 31 sledilaqfeis~~sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEISVPSAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 4689999983 3346799999999864
No 2
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=41.83 E-value=24 Score=19.83 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHHhhhcccchhhHH------HHHHH
Q 032451 47 KLQLKRLLLLMLFDFGYGVPFGHFL------NKFLD 76 (140)
Q Consensus 47 ~~D~~R~~~~~~~G~~~~gP~~~~w------y~~L~ 76 (140)
-+|++|++.-.....+..+-..|+- |+|||
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~ 42 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Confidence 4799999877666666677777775 55666
No 3
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=19.41 E-value=2.8e+02 Score=22.37 Aligned_cols=48 Identities=25% Similarity=0.375 Sum_probs=30.9
Q ss_pred HHhhhcccchhhHHHH-HHHhhccCC--C----hHHHHHHHHHHHHhHHHHHHHHH
Q 032451 58 LFDFGYGVPFGHFLNK-FLDAIFKGR--D----NKSVAKKVLLEQLIFSPWINFLF 106 (140)
Q Consensus 58 ~~G~~~~gP~~~~wy~-~L~~~~~~~--~----~~~~~~Kvl~Dq~i~~P~~~~~f 106 (140)
+++.++.=|+. ++.. .+|+.++-+ + ..+.+|..++.+++..|+....+
T Consensus 132 l~~~l~~LP~~-~Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~ 186 (482)
T 4aw6_A 132 LFSALAGLPWS-LYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLL 186 (482)
T ss_dssp HHHHHHHHHHH-HHHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHH-HHHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445543 2223 478888763 2 46889999999999999755443
No 4
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=17.68 E-value=81 Score=14.98 Aligned_cols=13 Identities=8% Similarity=0.299 Sum_probs=7.1
Q ss_pred HHHHHHHHhhCHH
Q 032451 120 GSVMKKVRKDYPA 132 (140)
Q Consensus 120 ~~~~~~~k~~~~~ 132 (140)
.++..++|+++..
T Consensus 4 kei~~kiK~kl~~ 16 (26)
T 2kfe_A 4 REFMSNLKEKLSG 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3556666665543
No 5
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=17.46 E-value=46 Score=21.39 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=16.3
Q ss_pred HHHHHHHh-hhCCCchhHHHHHHHHH
Q 032451 34 CSDAIAQK-ISGVKKLQLKRLLLLML 58 (140)
Q Consensus 34 ~gD~laQ~-~~~~~~~D~~R~~~~~~ 58 (140)
+-|++||. +..+..++..|++|+..
T Consensus 32 ~eDIlaqfeIS~s~Ay~I~~~lk~iC 57 (118)
T 2cmx_A 32 LEDILAQFEISVPSAYNIQRALKAIC 57 (118)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhhhHHHHHHHHHH
Confidence 56788886 34445677777777653
No 6
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=17.03 E-value=1.6e+02 Score=19.19 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHH
Q 032451 99 SPWINFLFMTYFGLVVEGKPWGSVMKK 125 (140)
Q Consensus 99 ~P~~~~~f~~~~~~~leg~~~~~~~~~ 125 (140)
-++.-.+--.+.. .++|+|++++.+.
T Consensus 107 ~~Lldl~c~~vA~-~ikgkt~eeiR~~ 132 (141)
T 1fs1_B 107 KGLLDVTCKTVAN-MIKGKTPEEIRKT 132 (141)
T ss_dssp HHHHHHHHHHHHH-HHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHcCCCHHHHHHH
Confidence 3444333334445 7799999887764
No 7
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=16.11 E-value=95 Score=17.15 Aligned_cols=17 Identities=18% Similarity=0.597 Sum_probs=14.9
Q ss_pred HhcCCChHHHHHHHHhh
Q 032451 113 VVEGKPWGSVMKKVRKD 129 (140)
Q Consensus 113 ~leg~~~~~~~~~~k~~ 129 (140)
+++|+|-+-|.+++++.
T Consensus 19 VLqgksR~vIirELqrT 35 (53)
T 2qho_B 19 VLQGKSRSVIIRELQRT 35 (53)
T ss_dssp HSTTCCHHHHHHHHHHT
T ss_pred HhcCCcHHHHHHHHHHh
Confidence 88999988899998875
No 8
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=15.65 E-value=2e+02 Score=17.14 Aligned_cols=34 Identities=12% Similarity=-0.052 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHhh
Q 032451 8 AWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI 42 (140)
Q Consensus 8 ~~~~Y~~~l~~~Pl~t~~~t~~~l~~~gD~laQ~~ 42 (140)
-..+-++..-|||..+-++. .+.+.+|+...|++
T Consensus 28 ~l~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrv 61 (75)
T 1p58_D 28 HAQRIETWILRHPGFTIMAA-ILAYTIGTTHFQRV 61 (75)
T ss_pred HHHHHHHHHHHChHHHHHHH-HHHHHHcCChHHHH
Confidence 44556778889999988877 88888998888875
No 9
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=14.53 E-value=29 Score=19.24 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=17.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCCChHHHH
Q 032451 95 QLIFSPWINFLFMTYFGLVVEGKPWGSVM 123 (140)
Q Consensus 95 q~i~~P~~~~~f~~~~~~~leg~~~~~~~ 123 (140)
.++++|+.+..-+....+-.+|.+.+|+.
T Consensus 15 Ni~~SP~Si~~aLaml~~GA~g~T~~ql~ 43 (55)
T 1m93_A 15 NVFISPPSISSVLTILYYGANGSTAEQLS 43 (55)
T ss_dssp CEEECHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CEEECHHHHHHHHHHHHhhccchHHHHHH
Confidence 67899997766555544123455544443
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=13.98 E-value=1.2e+02 Score=18.09 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=21.9
Q ss_pred CchhHHHHHHHHHHhhhcccchhhHHH
Q 032451 46 KKLQLKRLLLLMLFDFGYGVPFGHFLN 72 (140)
Q Consensus 46 ~~~D~~R~~~~~~~G~~~~gP~~~~wy 72 (140)
+.=++.+.++....|+++.|-+.+.-+
T Consensus 30 dr~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 30 TKDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999998876554
Done!