BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032452
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AQL|A Chain A, Crystal Structure Of The Mrg15 Mrg Domain
pdb|2AQL|B Chain B, Crystal Structure Of The Mrg15 Mrg Domain
Length = 173
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
Query: 29 STGEIVKGLQCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPE 86
+ E+V G++ YF+ L LLYK ER QY + +A D S VYGA HLLRLFV++
Sbjct: 63 AVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGA 122
Query: 87 LLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 133
+L + ++E++L LL + L D LK+L K+ +T F SA D E +
Sbjct: 123 MLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 164
>pdb|2LKM|B Chain B, Structural Basis For Molecular Interactions Involving Mrg
Domains: Implications In Chromatin Biology
Length = 172
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
Query: 29 STGEIVKGLQCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPE 86
+ E+V G++ YF+ L LLYK ER QY + +A D S VYGA HLLRLFV++
Sbjct: 62 AVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGA 121
Query: 87 LLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 133
+L + ++E++L LL + L D LK+L K+ +T F SA D E +
Sbjct: 122 MLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 163
>pdb|2F5J|A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15
pdb|2F5J|B Chain B, Crystal Structure Of Mrg Domain From Human Mrg15
Length = 181
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
Query: 29 STGEIVKGLQCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPE 86
+ E+V G++ YF+ L LLYK ER QY + +A D S VYGA HLLRLFV++
Sbjct: 63 AVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGA 122
Query: 87 LLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 133
+L + ++E++L LL + L D LK+L K+ +T F SA D E +
Sbjct: 123 MLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 164
>pdb|2Y0N|A Chain A, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|B Chain B, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|C Chain C, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|D Chain D, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
Length = 211
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 12/105 (11%)
Query: 28 DSTGEIVKGLQCYFDKALPIMLLYKSEREQYEDSMAA--DVSPSS----------VYGAE 75
D E+V GL+ FD LP++LLY E+ QY+ ++ D+ P++ +YGA+
Sbjct: 88 DLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQ 147
Query: 76 HLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFF 120
HLLRLFVKLPE+L E+ L L L+FL ++ FF
Sbjct: 148 HLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDDFF 192
>pdb|1W8I|A Chain A, The Structure Of Gene Product Af1683 From Archaeoglobus
Fulgidus
Length = 156
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 83 KLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSA 134
K L V I +ETLTLL++K + KFL+ + L+ ++ ++VE A
Sbjct: 35 KWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVESGVLNIIYTDDEVERKA 86
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 81 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 115
+ L E+ H K + T +L HK+ DL KFL++H
Sbjct: 10 YYTLEEIQKH-KDSKSTWVILHHKVYDLTKFLEEH 43
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 81 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 115
+ L E+ H K + T +L HK+ DL KFL++H
Sbjct: 11 YYTLEEIQKH-KDSKSTWVILHHKVYDLTKFLEEH 44
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 26 VADSTGEIVKGLQCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVY 72
V D+T I K L+ Y+ ++P++ Y+++ + ++ + A+ +P V+
Sbjct: 143 VDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHK--INAEGTPEDVF 187
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 81 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 115
+ L E+ H K + T +L HK+ DL KFL++H
Sbjct: 6 YYTLEEIQKH-KDSKSTWVILHHKVYDLTKFLEEH 39
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 81 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 115
+ L E+ H K + T +L HK+ DL KFL++H
Sbjct: 6 YYTLEEIQKH-KDSKSTWVILHHKVYDLTKFLEEH 39
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro Cytochrome
B5
Length = 94
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 81 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 115
+ L E+ H K + T +L HK+ DL KFL++H
Sbjct: 6 YYTLEEIQKH-KDSKSTWVILHHKVYDLTKFLEEH 39
>pdb|2KFV|A Chain A, Structure Of The Amino-Terminal Domain Of Human Fk506-
Binding Protein 3 NORTHEAST STRUCTURAL GENOMICS
Consortium Target Ht99a
Length = 92
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 107 DLLKFLQKHQSTFFLSRYH---SAEDVETSANK 136
D++KFLQ+H S FL+ + + ++V +ANK
Sbjct: 43 DIIKFLQEHGSDSFLAEHKLLGNIKNVAKTANK 75
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 97 TLTLLQHKLVDLLKFLQKH 115
T +L HK+ DL KFL++H
Sbjct: 26 TWLILHHKVYDLTKFLEEH 44
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro Cytochrome
B5, A Conformation, Ensemble Of 20 Structures
Length = 94
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 81 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 115
+ L E+ H K + T +L HK+ DL K+L++H
Sbjct: 6 YYTLEEIQKH-KDSKSTWVILHHKVYDLTKYLEEH 39
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized Microsomal
Rabbit Cytochrome B5
Length = 104
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 97 TLTLLQHKLVDLLKFLQKH 115
T +L HK+ DL KFL++H
Sbjct: 26 TWLILHHKVYDLTKFLEEH 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,618,446
Number of Sequences: 62578
Number of extensions: 130767
Number of successful extensions: 380
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 22
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)