Query 032452
Match_columns 140
No_of_seqs 110 out of 303
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 14:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05712 MRG: MRG; InterPro: 100.0 1.3E-33 2.8E-38 221.8 9.2 97 28-124 85-194 (194)
2 KOG3001 Dosage compensation re 99.9 3.1E-26 6.7E-31 197.2 5.0 108 30-137 279-390 (391)
3 PF11390 FdsD: NADH-dependant 44.4 36 0.00078 22.4 3.3 33 76-108 1-33 (61)
4 PF05372 Delta_lysin: Delta ly 38.8 58 0.0013 17.8 3.0 21 99-119 3-23 (25)
5 TIGR03248 galactar-dH20 galact 36.7 58 0.0012 29.8 4.4 49 67-129 305-353 (507)
6 cd04392 RhoGAP_ARHGAP19 RhoGAP 31.8 67 0.0015 25.4 3.6 29 93-121 169-197 (208)
7 COG4790 EscR Type III secretor 31.4 93 0.002 25.3 4.3 71 67-137 48-133 (214)
8 PF04295 GD_AH_C: D-galactarat 30.9 83 0.0018 27.9 4.4 49 67-129 196-244 (396)
9 cd04404 RhoGAP-p50rhoGAP RhoGA 27.5 2.1E+02 0.0045 21.9 5.7 18 103-120 178-195 (195)
10 PF10496 Syntaxin-18_N: SNARE- 25.7 1E+02 0.0022 20.7 3.2 24 98-121 45-68 (87)
11 PRK14752 delta-hemolysin; Prov 25.4 1E+02 0.0022 18.8 2.8 37 77-119 5-41 (44)
12 TIGR00135 gatC glutamyl-tRNA(G 21.1 1.8E+02 0.004 19.7 3.9 27 88-114 12-38 (93)
13 PF06055 ExoD: Exopolysacchari 20.7 1.5E+02 0.0033 23.2 3.7 36 82-117 76-111 (187)
14 PF02899 Phage_int_SAM_1: Phag 20.3 2.4E+02 0.0051 17.7 4.3 26 89-114 10-35 (84)
15 COG2721 UxaA Altronate dehydra 20.3 1.9E+02 0.0042 25.6 4.6 49 67-129 184-232 (381)
No 1
>PF05712 MRG: MRG; InterPro: IPR008676 This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). It is thought that the MRG family is involved in transcriptional regulation via histone acetylation [, ].; GO: 0005634 nucleus; PDB: 2AQL_A 2F5J_A 2LKM_B 2Y0N_D.
Probab=100.00 E-value=1.3e-33 Score=221.82 Aligned_cols=97 Identities=48% Similarity=0.827 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHhhhcccccCChhhHHHHHHHHhcC------------CCCCccccHHHHHHHhhhhHHHhhccCCCH
Q 032452 28 DSTGEIVKGLQCYFDKALPIMLLYKSEREQYEDSMAAD------------VSPSSVYGAEHLLRLFVKLPELLVHAKIEE 95 (140)
Q Consensus 28 ~~~~E~~~Gl~~YFn~~Lg~~LLY~~ER~QY~e~~~~~------------~~pS~iYG~~HLLRLfvkLP~ll~~t~~d~ 95 (140)
+.++|+++||+.|||++||++|||++||+||.+++++. .+||++||++|||||||+||++++.++||+
T Consensus 85 ~~~~e~~~Gl~~yFn~~L~~~LLY~~Er~Qy~~~~~~~~~~~~~~~~~~~~~ps~~YG~~HLLRL~vkLPell~~~~~~~ 164 (194)
T PF05712_consen 85 DLLKEVADGLRDYFNKALGSQLLYKFERPQYDELLKKHATRDDSPPDEPGFRPSDIYGAIHLLRLFVKLPELLSSTNMDE 164 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCTS-GGGHHHHHHHHHHS---------STTS-HHHC-BHHHHHHHHHHHHHHHCCCGGCH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHhcccchhccccCCCCCHHhhccHHHHHHHHHHHHHHHhhCCCCH
Confidence 56899999999999999999999999999999998653 599999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhhc-ccC
Q 032452 96 ETLTLLQHKLVDLLKFLQKHQSTFFL-SRY 124 (140)
Q Consensus 96 ~~~~~l~~~l~~fl~fL~~n~~~~f~-~dY 124 (140)
.+++.|..++++|++||++|.++||. ++|
T Consensus 165 ~~~~~l~~~l~~fl~fL~~n~~~~f~~~~y 194 (194)
T PF05712_consen 165 ESINILLEHLQDFLKFLEKNSEEYFSEEDY 194 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHS-GGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 99999999999999999999999999 666
No 2
>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=3.1e-26 Score=197.17 Aligned_cols=108 Identities=46% Similarity=0.725 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhhhcccccCChhhHHHHHHHHhcC---CCCCccccHHHHHHHhhhhHHHhhccCCCHHHHHHHHHHHH
Q 032452 30 TGEIVKGLQCYFDKALPIMLLYKSEREQYEDSMAAD---VSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLV 106 (140)
Q Consensus 30 ~~E~~~Gl~~YFn~~Lg~~LLY~~ER~QY~e~~~~~---~~pS~iYG~~HLLRLfvkLP~ll~~t~~d~~~~~~l~~~l~ 106 (140)
+.+...|++.|||.++|.+|||++||.||.++..+. .+||++||++||||||||||++|..+.|+..+++.|..+++
T Consensus 279 ~~~~~~g~~~yfn~~lG~~llyk~Er~qy~~~~~~~~~Ds~~s~vyGa~HLlRLfvKLpe~l~~~~~~~~~l~~Ll~~~~ 358 (391)
T KOG3001|consen 279 VLEVAAGLKRYFNGQLGVMLLYKFERLQYAEVVAKYPKDSPPSNVYGAEHLLRLFVKLPEILKYTPMDEKSLALLLRHRK 358 (391)
T ss_pred cccccccceeeecccchhhhhhhhhhHHHHHHHhcCCCCCCcccchhHHHHHHHHhHHHHHHHhccccHHHHHHHHHHHH
Confidence 445559999999999999999999999999999543 35999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhc-ccCCCCChHHHhhhcc
Q 032452 107 DLLKFLQKHQSTFFL-SRYHSAEDVETSANKQ 137 (140)
Q Consensus 107 ~fl~fL~~n~~~~f~-~dY~~~~~~Y~~~a~~ 137 (140)
+|++||.+|.+.||. ++|.+++++|.+.+-+
T Consensus 359 ~flk~L~~~~~~~f~~s~y~~~~~e~~~~~~~ 390 (391)
T KOG3001|consen 359 DFLKYLRKNSASFFSSSDYSNASPEYSSSSLP 390 (391)
T ss_pred HHHHHHHHhccccccccchhhhchhhhhcccC
Confidence 999999999977888 9999999999987643
No 3
>PF11390 FdsD: NADH-dependant formate dehydrogenase delta subunit FdsD; InterPro: IPR021074 FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits []. The delta subunit is not involved in the active centre of the enzyme [].
Probab=44.42 E-value=36 Score=22.37 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=26.2
Q ss_pred HHHHHhhhhHHHhhccCCCHHHHHHHHHHHHHH
Q 032452 76 HLLRLFVKLPELLVHAKIEEETLTLLQHKLVDL 108 (140)
Q Consensus 76 HLLRLfvkLP~ll~~t~~d~~~~~~l~~~l~~f 108 (140)
||+||--.+-..+...+-.++.+..+.++|+.|
T Consensus 1 ~LI~MANQIa~ff~~~p~~~~a~~~va~Hi~kF 33 (61)
T PF11390_consen 1 KLIKMANQIAAFFESYPPEEEAVEGVANHIKKF 33 (61)
T ss_pred CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 678888888888888777777888888888765
No 4
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=38.81 E-value=58 Score=17.78 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhchhhh
Q 032452 99 TLLQHKLVDLLKFLQKHQSTF 119 (140)
Q Consensus 99 ~~l~~~l~~fl~fL~~n~~~~ 119 (140)
..+.+.+.+|++|+.+-..+|
T Consensus 3 ~DIisTIgdfvKlI~~TV~KF 23 (25)
T PF05372_consen 3 ADIISTIGDFVKLIIETVKKF 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 457788999999998776654
No 5
>TIGR03248 galactar-dH20 galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0714).
Probab=36.72 E-value=58 Score=29.83 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=36.9
Q ss_pred CCCccccHHHHHHHhhhhHHHhhccCCCHHHHHHHHHHHHHHHHHHHhchhhhhcccCCCCCh
Q 032452 67 SPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAED 129 (140)
Q Consensus 67 ~pS~iYG~~HLLRLfvkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n~~~~f~~dY~~~~~ 129 (140)
.-.++||+||+| ..--.+++....+...++.+-+|...+-... |.+++|
T Consensus 305 Et~E~~GaE~iL----------~~Ra~~~ev~~k~~~~i~~~~~y~~~~g~~~----~~nPSp 353 (507)
T TIGR03248 305 EVTEVRDAIHLL----------TPRAETAEVAKALVREMDWYDRYLARGQADR----SANTTP 353 (507)
T ss_pred CCcceeChHHHH----------HhhhCCHHHHHHHHHHHHHHHHHHHHcCCCc----cCCCCc
Confidence 778999999986 3345577777888888888888888776643 556655
No 6
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=31.81 E-value=67 Score=25.36 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhchhhhhc
Q 032452 93 IEEETLTLLQHKLVDLLKFLQKHQSTFFL 121 (140)
Q Consensus 93 ~d~~~~~~l~~~l~~fl~fL~~n~~~~f~ 121 (140)
.+...+..-...++.++++|-+|.++.|.
T Consensus 169 ~~~~~~~~~~~~~~~iv~~lI~~~~~iF~ 197 (208)
T cd04392 169 LTPEDLHENAQKLNSIVTFMIKHSQKLFK 197 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444434445688999999999999997
No 7
>COG4790 EscR Type III secretory pathway, component EscR [Intracellular trafficking and secretion]
Probab=31.42 E-value=93 Score=25.34 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=48.8
Q ss_pred CCCccccHHHHHHHhhhhHHHhhcc---------CCCHHH-HHHHHHHHHHHHHHHHhchh----hhhc-ccCCCCChHH
Q 032452 67 SPSSVYGAEHLLRLFVKLPELLVHA---------KIEEET-LTLLQHKLVDLLKFLQKHQS----TFFL-SRYHSAEDVE 131 (140)
Q Consensus 67 ~pS~iYG~~HLLRLfvkLP~ll~~t---------~~d~~~-~~~l~~~l~~fl~fL~~n~~----~~f~-~dY~~~~~~Y 131 (140)
+--..||+.-+|-+|+.-|-.++.. .-|-++ .+...+++..+=+||.||.+ .||. +.=..-+++|
T Consensus 48 pNmal~gvAliLsmFvMaPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pyR~fL~k~t~~~~~~FF~~~~~~~wp~e~ 127 (214)
T COG4790 48 PNMALYGVALILSMFVMAPVGLQIYDRLQNEELSYTNIASVVKFDDKGLSPYRDFLKKNTEEEEVSFFERSAQKKWPEEY 127 (214)
T ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHhccccccCCCcHHHHHHHHHhhhhHHHHHHHHhCcHHHHHHHHHHHHHhCCHHH
Confidence 3345799999999999999887632 112123 35666777788888888866 6787 4445556677
Q ss_pred Hhhhcc
Q 032452 132 TSANKQ 137 (140)
Q Consensus 132 ~~~a~~ 137 (140)
.+..+.
T Consensus 128 ~~~lk~ 133 (214)
T COG4790 128 AEKLKP 133 (214)
T ss_pred HhccCC
Confidence 776654
No 8
>PF04295 GD_AH_C: D-galactarate dehydratase / Altronate hydrolase, C terminus; InterPro: IPR007392 This domain is found at the C terminus of D-galactarate dehydratase (4.2.1.42 from EC) which is thought to catalyse the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, [] and altronate hydrolase (altronic acid hydratase, 4.2.1.7 from EC), which catalyses D-altronate = 2-keto-2-deoxygluconate + H2O []. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core []. The N-terminal is represented by IPR007389 from INTERPRO.; GO: 0016836 hydro-lyase activity
Probab=30.94 E-value=83 Score=27.86 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=35.7
Q ss_pred CCCccccHHHHHHHhhhhHHHhhccCCCHHHHHHHHHHHHHHHHHHHhchhhhhcccCCCCCh
Q 032452 67 SPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAED 129 (140)
Q Consensus 67 ~pS~iYG~~HLLRLfvkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n~~~~f~~dY~~~~~ 129 (140)
.-.+++|+||+| ..--.+++....+...++.+-+|...+-... +.+++|
T Consensus 196 Et~El~GaE~~l----------~~Ra~~~ev~~k~~~~i~~~~~~~~~~g~~~----~~nPSp 244 (396)
T PF04295_consen 196 ETPELIGAEHIL----------ARRAVNPEVADKILALINWFEDYAKSHGQDI----GGNPSP 244 (396)
T ss_pred cCccccCHHHHH----------HHHhCCHHHHHHHHHHHHHHHHHHHHhCCCc----CCCcCC
Confidence 788999999986 3344567777888888888888888765543 455554
No 9
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=27.50 E-value=2.1e+02 Score=21.94 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhchhhhh
Q 032452 103 HKLVDLLKFLQKHQSTFF 120 (140)
Q Consensus 103 ~~l~~fl~fL~~n~~~~f 120 (140)
..++.|++||-+|.++.|
T Consensus 178 ~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 178 NPINTFTKFLLDHQDEIF 195 (195)
T ss_pred HHHHHHHHHHHHhHHhhC
Confidence 446778888888888765
No 10
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=25.73 E-value=1e+02 Score=20.74 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhc
Q 032452 98 LTLLQHKLVDLLKFLQKHQSTFFL 121 (140)
Q Consensus 98 ~~~l~~~l~~fl~fL~~n~~~~f~ 121 (140)
...|..+|.+|.+||.++...|-.
T Consensus 45 A~~i~~~I~~L~~fL~~iR~~YL~ 68 (87)
T PF10496_consen 45 AYRILSHITSLRKFLKSIRKAYLS 68 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999998776
No 11
>PRK14752 delta-hemolysin; Provisional
Probab=25.39 E-value=1e+02 Score=18.78 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=25.1
Q ss_pred HHHHhhhhHHHhhccCCCHHHHHHHHHHHHHHHHHHHhchhhh
Q 032452 77 LLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTF 119 (140)
Q Consensus 77 LLRLfvkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n~~~~ 119 (140)
.||.|.-+.+=+-. +.+.+...+.+|++|+-+...+|
T Consensus 5 ilrifilikegvis------ma~dii~tig~~vk~ii~tv~kf 41 (44)
T PRK14752 5 ILRIFILIKEGVIS------MAQDIISTIGDLVKWIIDTVNKF 41 (44)
T ss_pred HHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777766552221 23568889999999998776654
No 12
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=21.14 E-value=1.8e+02 Score=19.72 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.7
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHh
Q 032452 88 LVHAKIEEETLTLLQHKLVDLLKFLQK 114 (140)
Q Consensus 88 l~~t~~d~~~~~~l~~~l~~fl~fL~~ 114 (140)
|+.-.++++.+..+...++++++|+.+
T Consensus 12 La~L~l~eee~~~~~~~l~~il~~~~~ 38 (93)
T TIGR00135 12 LARLELSEEEAESFAGDLDKILGFVEQ 38 (93)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999975
No 13
>PF06055 ExoD: Exopolysaccharide synthesis, ExoD; InterPro: IPR010331 Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion [].
Probab=20.67 E-value=1.5e+02 Score=23.24 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=32.3
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHHHHHHHHHhchh
Q 032452 82 VKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQS 117 (140)
Q Consensus 82 vkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n~~ 117 (140)
.-||+.+..-+++.+..+.+.+.+...++|+++...
T Consensus 76 ~WLP~~l~~r~i~~~~l~~~~~~~~p~~~~ler~~r 111 (187)
T PF06055_consen 76 PWLPKFLRRRSISREKLRKAVRRLRPWLRRLERLLR 111 (187)
T ss_pred CCCChHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 458999999999999999999999999999998654
No 14
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=20.35 E-value=2.4e+02 Score=17.72 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=20.4
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHh
Q 032452 89 VHAKIEEETLTLLQHKLVDLLKFLQK 114 (140)
Q Consensus 89 ~~t~~d~~~~~~l~~~l~~fl~fL~~ 114 (140)
....+.+.++..-...++.|++|+..
T Consensus 10 ~~~~ls~~T~~~Y~~~l~~f~~~~~~ 35 (84)
T PF02899_consen 10 QERGLSPNTIRSYRRDLRRFIRWLEE 35 (84)
T ss_dssp HTTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCcHHHHHHHHHHHHHHHHhhhh
Confidence 34567888888888888889998888
No 15
>COG2721 UxaA Altronate dehydratase [Carbohydrate transport and metabolism]
Probab=20.29 E-value=1.9e+02 Score=25.59 Aligned_cols=49 Identities=24% Similarity=0.362 Sum_probs=35.3
Q ss_pred CCCccccHHHHHHHhhhhHHHhhccCCCHHHHHHHHHHHHHHHHHHHhchhhhhcccCCCCCh
Q 032452 67 SPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAED 129 (140)
Q Consensus 67 ~pS~iYG~~HLLRLfvkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n~~~~f~~dY~~~~~ 129 (140)
..++++|++|+| ...-.|++.-..+...++.+=+|..+|.. +-|.+++|
T Consensus 184 E~~E~iGAe~~l----------~kRa~~eeV~~klv~~i~w~~~y~~~~~~----~~~~nPsp 232 (381)
T COG2721 184 ETPEVIGAEHLL----------IKRAVNEEVHVKLVRSIRWYKDYFISHGQ----DIYGNPSP 232 (381)
T ss_pred ccccccchHHHH----------HhhccCHHHHHHHHHHHHHHHHHHHhcCC----CccCCCCC
Confidence 788999999985 33445666667788888888888877766 34556665
Done!