Query 032452
Match_columns 140
No_of_seqs 110 out of 303
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f5j_A Mortality factor 4-like 100.0 4.7E-40 1.6E-44 256.2 9.3 112 27-138 61-175 (181)
2 2y0n_A MALE-specific lethal 3 100.0 1.7E-37 5.7E-42 246.3 10.8 109 27-135 87-208 (211)
3 1dtc_A Acetyl-delta-toxin; NMR 30.3 43 0.0015 17.7 2.4 21 99-119 3-23 (26)
4 3u7r_A NADPH-dependent FMN red 28.2 51 0.0017 24.4 3.5 25 93-117 159-183 (190)
5 1wix_A HOOK homolog 1, RSGI RU 22.7 2.2E+02 0.0076 20.6 6.6 76 29-109 73-156 (164)
6 3kfu_G Glutamyl-tRNA(Gln) amid 21.0 1.2E+02 0.0041 20.0 3.9 28 88-115 17-44 (92)
7 3nrw_A Phage integrase/site-sp 20.8 1.7E+02 0.0059 18.7 5.5 39 73-115 55-93 (117)
8 3ip4_C Aspartyl/glutamyl-tRNA( 19.2 1.3E+02 0.0046 20.0 3.9 29 88-116 15-43 (100)
9 3h0l_C Glutamyl-tRNA(Gln) amid 17.0 1.1E+02 0.0039 20.1 3.1 29 88-116 13-41 (94)
10 3msx_B RHO GTPase-activating p 16.4 1.6E+02 0.0056 21.3 4.2 22 99-120 180-201 (201)
No 1
>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B
Probab=100.00 E-value=4.7e-40 Score=256.19 Aligned_cols=112 Identities=40% Similarity=0.611 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHhhhcccccCChhhHHHHHHHHhc--CCCCCccccHHHHHHHhhhhHHHhhccCCCHHHHHHHHHH
Q 032452 27 ADSTGEIVKGLQCYFDKALPIMLLYKSEREQYEDSMAA--DVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHK 104 (140)
Q Consensus 27 ~~~~~E~~~Gl~~YFn~~Lg~~LLY~~ER~QY~e~~~~--~~~pS~iYG~~HLLRLfvkLP~ll~~t~~d~~~~~~l~~~ 104 (140)
.++++|+++||+.|||++||++|||++||+||.+++++ +.+||++||++|||||||+||++++.++||+++++.|..+
T Consensus 61 ~~~~~Ev~~Gl~~YFd~~L~~~LLY~~ER~Qy~~ll~~~p~~~~S~iYGa~HLLRLfvkLPell~~t~~d~~s~~~L~~~ 140 (181)
T 2f5j_A 61 EYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNY 140 (181)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHSTTCCHHHHCBHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhCCCCCHHHHcCHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHH
Confidence 35789999999999999999999999999999999963 4599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhhc-ccCCCCChHHHhhhccc
Q 032452 105 LVDLLKFLQKHQSTFFL-SRYHSAEDVETSANKQE 138 (140)
Q Consensus 105 l~~fl~fL~~n~~~~f~-~dY~~~~~~Y~~~a~~~ 138 (140)
+++|++||++|.++||. ++|++++|+|+++|++.
T Consensus 141 l~~fl~fL~~n~~~~F~~~~Y~~~~~eY~~~~~~~ 175 (181)
T 2f5j_A 141 LHDFLKYLAKNSATLFSASDYEVAPPEYHRKAVLE 175 (181)
T ss_dssp HHHHHHHHHHTHHHHCCGGGEEECCHHHHC-----
T ss_pred HHHHHHHHHHHHHHhCCHHhcCCCCHHHHHHHhhh
Confidence 99999999999999996 99999999999999875
No 2
>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=246.30 Aligned_cols=109 Identities=40% Similarity=0.651 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHHhhhcccccCChhhHHHHHHHHhc------------CCCCCccccHHHHHHHhhhhHHHhhccCCC
Q 032452 27 ADSTGEIVKGLQCYFDKALPIMLLYKSEREQYEDSMAA------------DVSPSSVYGAEHLLRLFVKLPELLVHAKIE 94 (140)
Q Consensus 27 ~~~~~E~~~Gl~~YFn~~Lg~~LLY~~ER~QY~e~~~~------------~~~pS~iYG~~HLLRLfvkLP~ll~~t~~d 94 (140)
.++++|+++||+.|||++||++|||++||+||.++++. +.+||++||++|||||||+||++|+.++||
T Consensus 87 ~~~~~Ev~~GLr~YFd~~L~~~LLY~~ER~Qy~~~~~~~~~~~~~~~~~~~~~~S~iYGa~HLLRLfvkLPelL~~t~~d 166 (211)
T 2y0n_A 87 VDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFS 166 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHC--------CCSCCCCGGGTCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhhcccCCcccccCCCCHHHHcCHHHHHHHHHHhHHHHhcCCCC
Confidence 45789999999999999999999999999999999842 358999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhc-ccCCCCChHHHhhh
Q 032452 95 EETLTLLQHKLVDLLKFLQKHQSTFFL-SRYHSAEDVETSAN 135 (140)
Q Consensus 95 ~~~~~~l~~~l~~fl~fL~~n~~~~f~-~dY~~~~~~Y~~~a 135 (140)
+++++.|..++++|++||++|.++||. ++|++++|+|++..
T Consensus 167 ~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y~~~~~~~~~~~ 208 (211)
T 2y0n_A 167 EKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYSTK 208 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCGGGEECC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhccCCCCHHHHhhc
Confidence 999999999999999999999999997 89999988886653
No 3
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=30.32 E-value=43 Score=17.67 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhchhhh
Q 032452 99 TLLQHKLVDLLKFLQKHQSTF 119 (140)
Q Consensus 99 ~~l~~~l~~fl~fL~~n~~~~ 119 (140)
..+.+.+.+|++|+.+-..+|
T Consensus 3 ~DIisTIgdfvKlI~~TV~KF 23 (26)
T 1dtc_A 3 QDIISTIGDLVKWIIDTVNKF 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 357788999999998876654
No 4
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=28.20 E-value=51 Score=24.42 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhchh
Q 032452 93 IEEETLTLLQHKLVDLLKFLQKHQS 117 (140)
Q Consensus 93 ~d~~~~~~l~~~l~~fl~fL~~n~~ 117 (140)
.|++..+.+...+++|++|+++|.-
T Consensus 159 ~de~~~~~l~~~~~~~~~~i~~~~~ 183 (190)
T 3u7r_A 159 TDEKTAKFLQGFVDAFVDWIEKHGL 183 (190)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4677778999999999999998853
No 5
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=22.65 E-value=2.2e+02 Score=20.60 Aligned_cols=76 Identities=13% Similarity=0.240 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhhcccccCChhhHHHHHHHHhcCCCCCccccHHHHHHHhhhh-------HHHhhc-cCCCHHHHHH
Q 032452 29 STGEIVKGLQCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKL-------PELLVH-AKIEEETLTL 100 (140)
Q Consensus 29 ~~~E~~~Gl~~YFn~~Lg~~LLY~~ER~QY~e~~~~~~~pS~iYG~~HLLRLfvkL-------P~ll~~-t~~d~~~~~~ 100 (140)
-++.+.++|..|+...++..+. ....|-...+- ++ ++.=.+.-||+|+.-. .+.+.. ..+++.....
T Consensus 73 NLk~l~~~i~~Yy~e~L~~~i~-~~~~pd~~~Ia-~~---~d~~el~kLl~LiLg~AV~c~~ke~~I~~I~~L~~~~Q~~ 147 (164)
T 1wix_A 73 NLKKVLHGITSYYHEFLGQQIS-EELIPDLNQIT-EC---ADPVELGRLLQLILGCAVNCEKKQEHIKNIMTLEESVQHV 147 (164)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCC-TTTCCCHHHHH-TT---CCHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccc-ccCCCCHHHHH-hC---CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHH
Confidence 4789999999999999987653 12233333333 21 1233445566665321 122222 2467777777
Q ss_pred HHHHHHHHH
Q 032452 101 LQHKLVDLL 109 (140)
Q Consensus 101 l~~~l~~fl 109 (140)
|+..|++++
T Consensus 148 im~~Iqev~ 156 (164)
T 1wix_A 148 VMTAIQELM 156 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 6
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=21.00 E-value=1.2e+02 Score=19.99 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.3
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHhc
Q 032452 88 LVHAKIEEETLTLLQHKLVDLLKFLQKH 115 (140)
Q Consensus 88 l~~t~~d~~~~~~l~~~l~~fl~fL~~n 115 (140)
|+...++++.+..+...+++.+.|+++=
T Consensus 17 LArL~l~eeE~~~~~~~l~~Il~~ve~L 44 (92)
T 3kfu_G 17 LAKIRLSPEEEALLLQDLKRILDFVDAL 44 (92)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999853
No 7
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=20.84 E-value=1.7e+02 Score=18.65 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=29.4
Q ss_pred cHHHHHHHhhhhHHHhhccCCCHHHHHHHHHHHHHHHHHHHhc
Q 032452 73 GAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 115 (140)
Q Consensus 73 G~~HLLRLfvkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n 115 (140)
...++-+.+..|- ...+.+.+++.....++.|.+|+.+.
T Consensus 55 t~~~i~~y~~~l~----~~~~s~~Ti~~~ls~lr~f~~~l~~~ 93 (117)
T 3nrw_A 55 TGWKLDEYETFRR----GSDVSPATLNGEMQTLKNWLEYLARI 93 (117)
T ss_dssp CHHHHHHHHHHHH----TSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 4455655555442 25689999999999999999999865
No 8
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=19.18 E-value=1.3e+02 Score=20.00 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=24.8
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHhch
Q 032452 88 LVHAKIEEETLTLLQHKLVDLLKFLQKHQ 116 (140)
Q Consensus 88 l~~t~~d~~~~~~l~~~l~~fl~fL~~n~ 116 (140)
|+...++++.+..+...+++.+.|+++=.
T Consensus 15 LArL~l~eeE~~~~~~~l~~Il~~ve~L~ 43 (100)
T 3ip4_C 15 LARLQISPEETEEMANTLESILDFAKQND 43 (100)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678899999999999999999998543
No 9
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=17.05 E-value=1.1e+02 Score=20.11 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=24.7
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHhch
Q 032452 88 LVHAKIEEETLTLLQHKLVDLLKFLQKHQ 116 (140)
Q Consensus 88 l~~t~~d~~~~~~l~~~l~~fl~fL~~n~ 116 (140)
|+...++++.+..+...+++.+.|+++=.
T Consensus 13 LArL~l~eee~~~~~~~l~~Il~~ve~L~ 41 (94)
T 3h0l_C 13 LARLELKEEEIEVFQKQLSDILDFIDQLK 41 (94)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTTGG
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678899999999999999999998533
No 10
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=16.44 E-value=1.6e+02 Score=21.27 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhchhhhh
Q 032452 99 TLLQHKLVDLLKFLQKHQSTFF 120 (140)
Q Consensus 99 ~~l~~~l~~fl~fL~~n~~~~f 120 (140)
..+...++.++++|-+|.++.|
T Consensus 180 ~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 180 NEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhHhhC
Confidence 3456677788999999998876
Done!