Query 032452
Match_columns 140
No_of_seqs 110 out of 303
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 23:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032452.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032452hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h41a2 d.92.2.2 (A:5-151) alp 44.9 2.9 0.00021 28.5 0.7 15 68-82 118-132 (147)
2 d1tx4a_ a.116.1.1 (A:) p50 Rho 38.2 39 0.0029 22.7 6.2 18 103-120 179-196 (196)
3 d1l8na2 d.92.2.2 (A:4-142) alp 34.9 5.2 0.00038 26.7 0.7 16 67-82 108-123 (139)
4 d1a0pa1 a.60.9.1 (A:3-100) Rec 30.9 45 0.0033 20.0 4.9 40 72-115 48-87 (98)
5 d1ud0a_ a.8.4.1 (A:) DnaK {Rat 25.9 37 0.0027 20.3 3.7 27 91-117 24-50 (84)
6 d2f2ac1 a.137.12.1 (C:3-94) Gl 18.1 53 0.0039 19.8 3.3 29 88-116 13-41 (92)
7 d1f7ca_ a.116.1.1 (A:) Graf {C 15.2 1.5E+02 0.011 19.3 8.6 91 30-121 64-187 (191)
8 d1gula1 a.45.1.1 (A:81-220) Cl 14.0 1.4E+02 0.0099 18.2 6.6 29 22-50 4-32 (140)
9 d1nhya1 a.45.1.1 (A:76-219) GS 12.9 62 0.0045 20.3 2.6 63 46-116 5-72 (144)
10 d1y7ea2 c.56.5.4 (A:4-100,A:23 11.9 88 0.0064 23.5 3.6 31 91-121 5-35 (322)
No 1
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=44.90 E-value=2.9 Score=28.46 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=12.8
Q ss_pred CCccccHHHHHHHhh
Q 032452 68 PSSVYGAEHLLRLFV 82 (140)
Q Consensus 68 pS~iYG~~HLLRLfv 82 (140)
-.-+||+-||||++-
T Consensus 118 rG~LYG~f~lLr~l~ 132 (147)
T d1h41a2 118 VGVLYGSFHLLRLIQ 132 (147)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchHhHHHHHHHHHH
Confidence 456899999999985
No 2
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.20 E-value=39 Score=22.75 Aligned_cols=18 Identities=33% Similarity=0.611 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhchhhhh
Q 032452 103 HKLVDLLKFLQKHQSTFF 120 (140)
Q Consensus 103 ~~l~~fl~fL~~n~~~~f 120 (140)
....+++++|-+|.+..|
T Consensus 179 ~~~~~~~~~LI~~~~~iF 196 (196)
T d1tx4a_ 179 NPINTFTKFLLDHQGELF 196 (196)
T ss_dssp HHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHhHHhhC
Confidence 445667777777777655
No 3
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=34.87 E-value=5.2 Score=26.73 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=12.8
Q ss_pred CCCccccHHHHHHHhh
Q 032452 67 SPSSVYGAEHLLRLFV 82 (140)
Q Consensus 67 ~pS~iYG~~HLLRLfv 82 (140)
+-.-.||+-||||++-
T Consensus 108 ~~G~lYGvf~Ll~~lq 123 (139)
T d1l8na2 108 DAGVLYGVFHFLRLLQ 123 (139)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 3445799999999884
No 4
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=30.85 E-value=45 Score=19.96 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=26.1
Q ss_pred ccHHHHHHHhhhhHHHhhccCCCHHHHHHHHHHHHHHHHHHHhc
Q 032452 72 YGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 115 (140)
Q Consensus 72 YG~~HLLRLfvkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n 115 (140)
=+..|+-+.+..+- ...+.+.+++.-.+.++.|.+||.++
T Consensus 48 i~~~~i~~yl~~l~----~~g~s~~Ti~r~lsalr~ff~~l~~~ 87 (98)
T d1a0pa1 48 AQSDDLQALLAERL----EGGYKATSSARLLSAVRRLFQYLYRE 87 (98)
T ss_dssp CCHHHHHHHHHSCC-----------CHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHH----hcccccchHHHHHHHHHHHHHHHHHC
Confidence 35677766665542 35577888999999999999999976
No 5
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.94 E-value=37 Score=20.29 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=23.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhchh
Q 032452 91 AKIEEETLTLLQHKLVDLLKFLQKHQS 117 (140)
Q Consensus 91 t~~d~~~~~~l~~~l~~fl~fL~~n~~ 117 (140)
..++++..+.|...+.+...||..|.+
T Consensus 24 ~kl~~~dk~~i~~~l~e~~~WL~~n~~ 50 (84)
T d1ud0a_ 24 GKINDEDKQKILDKCNEIISWLDKNQT 50 (84)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 457788889999999999999998853
No 6
>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}
Probab=18.10 E-value=53 Score=19.82 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=24.7
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHhch
Q 032452 88 LVHAKIEEETLTLLQHKLVDLLKFLQKHQ 116 (140)
Q Consensus 88 l~~t~~d~~~~~~l~~~l~~fl~fL~~n~ 116 (140)
|+.-.++++.+..+...+++.+.|+.+=.
T Consensus 13 LarL~l~deE~~~~~~~l~~Il~~~~~L~ 41 (92)
T d2f2ac1 13 LARLQISPEETEEMANTLESILDFAKQND 41 (92)
T ss_dssp HTTCCCCTTHHHHHHHHHHHHHHHHGGGG
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678899999999999999999998543
No 7
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=15.20 E-value=1.5e+02 Score=19.33 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhhcccccCChhhHHHHHHHHh---------------cCCCCCccccHHHHHHHhhhhHHHhhccCCC
Q 032452 30 TGEIVKGLQCYFDKALPIMLLYKSEREQYEDSMA---------------ADVSPSSVYGAEHLLRLFVKLPELLVHAKIE 94 (140)
Q Consensus 30 ~~E~~~Gl~~YFn~~Lg~~LLY~~ER~QY~e~~~---------------~~~~pS~iYG~~HLLRLfvkLP~ll~~t~~d 94 (140)
+..++.-||.||.. |+.-|+=..--+.+..... ..-++...-=..+|+++|.++-.--..+.|+
T Consensus 64 v~~va~~lK~~lre-Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~~~~~L~~l~~~l~~v~~~~~~NkM~ 142 (191)
T d1f7ca_ 64 IKTITSALKTYLRM-LPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMT 142 (191)
T ss_dssp HHHHHHHHHHHHHT-SSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCC
T ss_pred HHHHHHHHHHHHHh-CCCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 45677777888877 5555542222222222211 1113333333344555554444333334566
Q ss_pred HHHHHHHH------------------HHHHHHHHHHHhchhhhhc
Q 032452 95 EETLTLLQ------------------HKLVDLLKFLQKHQSTFFL 121 (140)
Q Consensus 95 ~~~~~~l~------------------~~l~~fl~fL~~n~~~~f~ 121 (140)
...+..+. ...+.++++|-+|.+.+|.
T Consensus 143 ~~nLA~~f~P~l~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF~ 187 (191)
T d1f7ca_ 143 VANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIENHEKIFN 187 (191)
T ss_dssp HHHHHHHHHHHHSCC---CCSGGGGHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhhchhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 66543222 3456788888888888886
No 8
>d1gula1 a.45.1.1 (A:81-220) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}
Probab=14.01 E-value=1.4e+02 Score=18.19 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=21.9
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccccC
Q 032452 22 AGCRVADSTGEIVKGLQCYFDKALPIMLL 50 (140)
Q Consensus 22 ~~~~~~~~~~E~~~Gl~~YFn~~Lg~~LL 50 (140)
++..|...+..++.|+.+.++...+....
T Consensus 4 kd~~E~a~vD~~~d~~~dl~~~~~~~~~~ 32 (140)
T d1gula1 4 KNLKERTLIDMYVEGTLDLLELLIMHPFL 32 (140)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45556677888999999999887766543
No 9
>d1nhya1 a.45.1.1 (A:76-219) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.87 E-value=62 Score=20.29 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=35.8
Q ss_pred ccccCCh----hhHHHHHHHHh-cCCCCCccccHHHHHHHhhhhHHHhhccCCCHHHHHHHHHHHHHHHHHHHhch
Q 032452 46 PIMLLYK----SEREQYEDSMA-ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQ 116 (140)
Q Consensus 46 g~~LLY~----~ER~QY~e~~~-~~~~pS~iYG~~HLLRLfvkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n~ 116 (140)
.++||.+ .+|.|+.+++. .+......-+...+ | .+.....+.+.++.....+.+.+..|++..
T Consensus 5 ~~~lL~~~~d~~~ra~v~~Wl~~~~~~l~~~~~~~~~-------~-~~~~~~~~~~~~e~~~~~~~~~l~~le~~L 72 (144)
T d1nhya1 5 KTQLLGADDDLNAQAQIIRWQSLANSDLCIQIANTIV-------P-LKGGAPYNKKSVDSAMDAVDKIVDIFENRL 72 (144)
T ss_dssp HHHHTCCTTCHHHHHHHHHHHHHHHTTTTGGGGGTHH-------H-HTTSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHcCCCchHHHHHHH-------H-HhcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567775 46888887662 11111111221111 1 222345677777888888888888888764
No 10
>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]}
Probab=11.85 E-value=88 Score=23.53 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=25.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhchhhhhc
Q 032452 91 AKIEEETLTLLQHKLVDLLKFLQKHQSTFFL 121 (140)
Q Consensus 91 t~~d~~~~~~l~~~l~~fl~fL~~n~~~~f~ 121 (140)
..++++..+.+....++|++||.+....|..
T Consensus 5 ~~~~~~~~~~~~~~a~~~~~Fl~~~~T~~ha 35 (322)
T d1y7ea2 5 IYLNEEEKNQILNFSESYKKFISKFKTEREV 35 (322)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3567788889999999999999998876653
Done!