BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032453
MDSLFSKLQNKEDSKSATAHNENPTKEHHQPSNAELMASAKCVAEAAKATFSKESDKVDK
AKVAGAAENLVAAGSKYGNLEENKYVDKAKDYLHQYHSSHSTAQTDTSGHSAQGGHDSSS
VPSGGGYGDYLKTAQGFLNK

High Scoring Gene Products

Symbol, full name Information P value
NRP1
AT2G03440
protein from Arabidopsis thaliana 3.4e-13
AT1G13930 protein from Arabidopsis thaliana 1.4e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032453
        (140 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2063788 - symbol:NRP1 "AT2G03440" species:3702...   173  3.4e-13   1
TAIR|locus:2035837 - symbol:AT1G13930 "AT1G13930" species...   139  1.4e-09   1


>TAIR|locus:2063788 [details] [associations]
            symbol:NRP1 "AT2G03440" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0009617 "response to
            bacterium" evidence=IEP] [GO:0009408 "response to heat"
            evidence=IEP;IMP] [GO:0009409 "response to cold" evidence=IEP]
            [GO:0009738 "abscisic acid mediated signaling pathway"
            evidence=IMP] GO:GO:0009617 EMBL:CP002685 GO:GO:0009738
            GO:GO:0009409 GO:GO:0009408 EMBL:AC006284 ProtClustDB:CLSN2683834
            EMBL:AY136477 IPI:IPI00533812 PIR:E84448 RefSeq:NP_178443.1
            UniGene:At.41393 UniGene:At.74000 STRING:Q9ZQ80 PRIDE:Q9ZQ80
            ProMEX:Q9ZQ80 EnsemblPlants:AT2G03440.1 GeneID:814873
            KEGG:ath:AT2G03440 InParanoid:Q9ZQ80 OMA:KMAQGFM
            ArrayExpress:Q9ZQ80 Genevestigator:Q9ZQ80 Uniprot:Q9ZQ80
        Length = 187

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 46/134 (34%), Positives = 64/134 (47%)

Query:    21 NENPTKEHHQPSNAELMXXXXXXXXXXXXTFSKESXXXXXXXXXXXXENLVAAGSKYGNL 80
             N +PT  H   +NAELM                ES             +++ A S+YG L
Sbjct:    54 NTDPTT-HRPATNAELMASAKIVAEAAQAAARHESDKLDKAKVAGATADILDAASRYGKL 112

Query:    81 EEN----KYVDKAKDYLHQYHSSHSTAQTDTSG-HSAQGGHDSSS-VP--------SGGG 126
             +E     +Y++KA+ YLH+Y +SHS + T  +G H   GGH   +  P        SGGG
Sbjct:   113 DEKSGVGQYLEKAEQYLHKYETSHSHSSTGGTGSHGNVGGHGGGAGAPAAKKEDEKSGGG 172

Query:   127 --YGDYLKTAQGFL 138
               +GDY K AQGF+
Sbjct:   173 HGFGDYAKMAQGFM 186


>TAIR|locus:2035837 [details] [associations]
            symbol:AT1G13930 "AT1G13930" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0046686
            "response to cadmium ion" evidence=IEP;RCA] [GO:0009651 "response
            to salt stress" evidence=RCA;IMP] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0009266 "response to
            temperature stimulus" evidence=RCA] [GO:0009611 "response to
            wounding" evidence=RCA] [GO:0009805 "coumarin biosynthetic process"
            evidence=RCA] [GO:0009963 "positive regulation of flavonoid
            biosynthetic process" evidence=RCA] [GO:0042744 "hydrogen peroxide
            catabolic process" evidence=RCA] EMBL:CP002684 GO:GO:0005886
            GO:GO:0046686 GO:GO:0009570 GO:GO:0009651 GO:GO:0009941
            EMBL:AC007576 EMBL:AC068197 UniGene:At.25532 UniGene:At.22637
            EMBL:AY045640 EMBL:AY058230 IPI:IPI00524841 PIR:D86272
            RefSeq:NP_001184989.1 RefSeq:NP_001184990.1 RefSeq:NP_563934.1
            UniGene:At.67684 STRING:Q9XI93 PRIDE:Q9XI93 ProMEX:Q9XI93
            EnsemblPlants:AT1G13930.1 EnsemblPlants:AT1G13930.2
            EnsemblPlants:AT1G13930.3 GeneID:837953 KEGG:ath:AT1G13930
            TAIR:At1g13930 InParanoid:Q9XI93 OMA:YESSHST PhylomeDB:Q9XI93
            ProtClustDB:CLSN2683834 Genevestigator:Q9XI93 Uniprot:Q9XI93
        Length = 155

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 43/134 (32%), Positives = 57/134 (42%)

Query:    20 HNE--NPTKEHHQPS-NAELMXXXXXXXXXXXXTFSKESXXXXXXXXXXXXENLVAAGSK 76
             HN+    T+   +P+ NAELM                ES             +++ A  K
Sbjct:    21 HNKPVEGTETATRPATNAELMASAKVVAEAAQAAARNESDKLDKGKVAGASADILDAAEK 80

Query:    77 YGNLEEN----KYVDKAKDYLHQYHSSHSTAQTDTSGHSAQGGHDSSSVP--------SG 124
             YG  +E     +Y+DKA+ YL+ Y SSHST        ++Q    S   P        SG
Sbjct:    81 YGKFDEKSSTGQYLDKAEKYLNDYESSHSTGAGGPPPPTSQAEPASQPEPAAKKDDEESG 140

Query:   125 GGYGDYLKTAQGFL 138
             GG G Y K AQGFL
Sbjct:   141 GGLGGYAKMAQGFL 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.302   0.119   0.331    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       116   0.00091  102 3  11 23  0.49    31
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  489 (52 KB)
  Total size of DFA:  111 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.55u 0.10s 13.65t   Elapsed:  00:00:01
  Total cpu time:  13.55u 0.10s 13.65t   Elapsed:  00:00:01
  Start:  Sat May 11 05:44:22 2013   End:  Sat May 11 05:44:23 2013

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