BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032453
         (140 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3R2T|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of
           Superantigen-Like Protein From Staphylococcus Aureus
           Subsp. Aureus Nctc 8325.
 pdb|3R2T|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of
           Superantigen-Like Protein From Staphylococcus Aureus
           Subsp. Aureus Nctc 8325
          Length = 249

 Score = 26.6 bits (57), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 93  LHQYHSSHSTAQTDTSGHSAQGGHDSSSV 121
           LHQY+S  S   T+ SG S QG +DS+ +
Sbjct: 63  LHQYYSGPSYELTNVSGQS-QGYYDSNVL 90


>pdb|3TU3|B Chain B, 1.92 Angstrom Resolution Crystal Structure Of The
           Full-Length Spcu In Complex With Full-Length Exou From
           The Type Iii Secretion System Of Pseudomonas Aeruginosa
          Length = 711

 Score = 25.8 bits (55), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 82  ENKYVDKAKDYLHQYHSSHSTAQTDTSGHSAQGGHDSSSV---PSGGGYGDYLKTAQGFL 138
           EN Y      ++    ++ S+   +     +Q  H S+S+   PSG G G  LK+  G L
Sbjct: 16  ENLYFQSNAMHIQSLGATASSLNQEPVETPSQAAHKSASLRQEPSGQGLGVALKSTPGIL 75

Query: 139 N 139
           +
Sbjct: 76  S 76


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.302    0.119    0.331 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,778,071
Number of Sequences: 62578
Number of extensions: 122493
Number of successful extensions: 138
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 9
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 46 (22.3 bits)