Query 032453
Match_columns 140
No_of_seqs 29 out of 31
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 14:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03188 histidine_hisI phosp 43.6 49 0.0011 23.7 4.1 37 33-71 21-63 (84)
2 PRK00400 hisE phosphoribosyl-A 36.7 50 0.0011 24.6 3.4 37 33-71 25-67 (105)
3 PF11753 DUF3310: Protein of u 35.5 62 0.0013 21.5 3.4 34 61-94 26-59 (60)
4 PF08855 DUF1825: Domain of un 35.5 45 0.00098 25.4 3.0 35 63-97 17-54 (108)
5 PRK02759 bifunctional phosphor 29.2 69 0.0015 26.6 3.4 37 33-71 136-178 (203)
6 TIGR03171 soxL2 Rieske iron-su 26.9 36 0.00078 30.2 1.4 21 78-98 33-53 (321)
7 COG5223 Uncharacterized conser 24.6 43 0.00094 28.7 1.5 20 75-94 24-44 (240)
8 PF06345 Drf_DAD: DRF Autoregu 22.3 28 0.0006 18.7 -0.1 10 1-10 3-12 (15)
9 COG4699 Uncharacterized protei 21.0 64 0.0014 25.3 1.6 20 79-98 66-85 (120)
10 PF14013 MT0933_antitox: MT093 19.8 1.3E+02 0.0028 19.7 2.7 24 47-72 5-28 (51)
No 1
>TIGR03188 histidine_hisI phosphoribosyl-ATP pyrophosphohydrolase. This enzyme, phosphoribosyl-ATP pyrophosphohydrolase, catalyses the second step in the histidine biosynthesis pathway. It often occurs as a fusion protein. This model a somewhat narrower scope than Pfam model pfam01503, as some paralogs that appear to be functionally distinct are excluded from this model.
Probab=43.59 E-value=49 Score=23.69 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=26.0
Q ss_pred hHHHHHh------HHHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032453 33 NAELMAS------AKCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (140)
Q Consensus 33 s~eLmaS------aKvvaeAAqs~~~~es~kvDK~kVAgAAadlL 71 (140)
+..|++. -||.-||+....--+. =|+..|+.-++|||
T Consensus 21 T~~L~~~G~~ki~kKvgEEa~E~iiAa~~--~d~~~~~~E~ADLl 63 (84)
T TIGR03188 21 TARLFAKGLDKILKKVGEEAVEVVIAAKN--GDKEELVYEAADLL 63 (84)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 5777776 3777777766554432 36778999999987
No 2
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=36.72 E-value=50 Score=24.61 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=25.7
Q ss_pred hHHHHHhH------HHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032453 33 NAELMASA------KCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (140)
Q Consensus 33 s~eLmaSa------KvvaeAAqs~~~~es~kvDK~kVAgAAadlL 71 (140)
+..|++.+ ||.-||+....--+ +=|+..|..-+||||
T Consensus 25 T~~L~~~G~~ki~kKlgEEa~E~i~A~~--~~d~~~~i~E~ADLl 67 (105)
T PRK00400 25 TAKLLDKGLDKILKKVGEEATEVVIAAK--DGDREELVYEIADLL 67 (105)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Confidence 56777743 77777776654433 246888999999987
No 3
>PF11753 DUF3310: Protein of unknwon function (DUF3310); InterPro: IPR021739 This entry is represented by Bacteriophage T7, Gp1.7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=35.50 E-value=62 Score=21.52 Aligned_cols=34 Identities=21% Similarity=0.072 Sum_probs=29.3
Q ss_pred hHHhhhHHHHHHhhhhhccccchhhHHHHHHHHH
Q 032453 61 AKVAGAAENLVAAGSKYGNLEENKYVDKAKDYLH 94 (140)
Q Consensus 61 ~kVAgAAadlL~Aas~YGKLdekqYvdKAe~YL~ 94 (140)
..++-.-++++--+.++|+=+.-+-|+||..||.
T Consensus 26 ~~~~f~~gnaiKY~~R~~~K~~~eDl~KA~~Yl~ 59 (60)
T PF11753_consen 26 QFLGFCLGNAIKYLWRAGKKNGIEDLKKAKWYLD 59 (60)
T ss_pred hhhhHHHHHHHHHHHHHcccCcHHHHHHHHHHHc
Confidence 4567778899999999998866699999999985
No 4
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=35.45 E-value=45 Score=25.43 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=26.9
Q ss_pred HhhhHHHHHHhhhhhcccc--ch-hhHHHHHHHHHhhh
Q 032453 63 VAGAAENLVAAGSKYGNLE--EN-KYVDKAKDYLHQYH 97 (140)
Q Consensus 63 VAgAAadlL~Aas~YGKLd--ek-qYvdKAe~YL~~y~ 97 (140)
+-.---+|..-.+.||++| +| .|||+-+.-+-+|.
T Consensus 17 if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~Lidkqk 54 (108)
T PF08855_consen 17 IFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQK 54 (108)
T ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 3344456777889999999 33 99999998887775
No 5
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=29.24 E-value=69 Score=26.63 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=24.3
Q ss_pred hHHHHHh------HHHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032453 33 NAELMAS------AKCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (140)
Q Consensus 33 s~eLmaS------aKvvaeAAqs~~~~es~kvDK~kVAgAAadlL 71 (140)
+..|+.. -||.-||+..++--+. =|+..|+.-+||||
T Consensus 136 T~~L~~~G~~kI~kKvgEEA~E~iiAak~--~d~~~li~E~ADLl 178 (203)
T PRK02759 136 TAKLFASGTKRIAQKVGEEAVEVVLAAKN--NDKEELINEAADLL 178 (203)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 6677765 3666666665444332 36778888888886
No 6
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=26.92 E-value=36 Score=30.23 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=18.4
Q ss_pred ccccchhhHHHHHHHHHhhhc
Q 032453 78 GNLEENKYVDKAKDYLHQYHS 98 (140)
Q Consensus 78 GKLdekqYvdKAe~YL~~y~s 98 (140)
-|+|++.+|+|-||||-.|-.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~ 53 (321)
T TIGR03171 33 TKFDSREFVNKGEDYLFNYVN 53 (321)
T ss_pred ccccHHHHHhhhhHHHhhhhh
Confidence 367888999999999999975
No 7
>COG5223 Uncharacterized conserved protein [Function unknown]
Probab=24.64 E-value=43 Score=28.75 Aligned_cols=20 Identities=45% Similarity=0.803 Sum_probs=15.9
Q ss_pred hhhccccch-hhHHHHHHHHH
Q 032453 75 SKYGNLEEN-KYVDKAKDYLH 94 (140)
Q Consensus 75 s~YGKLdek-qYvdKAe~YL~ 94 (140)
.+||+|+.+ .||..|.+|=.
T Consensus 24 rkyG~LEK~KDyvkRaqd~~~ 44 (240)
T COG5223 24 RKYGKLEKKKDYVKRAQDINK 44 (240)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 689999966 89988877643
No 8
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=22.30 E-value=28 Score=18.65 Aligned_cols=10 Identities=60% Similarity=0.806 Sum_probs=7.9
Q ss_pred Cchhhhhhhc
Q 032453 1 MDSLFSKLQN 10 (140)
Q Consensus 1 ~~~~~~~~~~ 10 (140)
||||...||.
T Consensus 3 mdsllealqt 12 (15)
T PF06345_consen 3 MDSLLEALQT 12 (15)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7888888874
No 9
>COG4699 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.04 E-value=64 Score=25.35 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=17.0
Q ss_pred cccchhhHHHHHHHHHhhhc
Q 032453 79 NLEENKYVDKAKDYLHQYHS 98 (140)
Q Consensus 79 KLdekqYvdKAe~YL~~y~s 98 (140)
+=+|..|-|-.++||++|||
T Consensus 66 n~eD~~wCEDCeedLQ~fhs 85 (120)
T COG4699 66 NNEDMEWCEDCEEDLQQFHS 85 (120)
T ss_pred cchhhhHHHHHHHHHHHHHH
Confidence 33456899999999999997
No 10
>PF14013 MT0933_antitox: MT0933-like antitoxin protein
Probab=19.81 E-value=1.3e+02 Score=19.69 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=12.3
Q ss_pred HHHhhccccccchhhHHhhhHHHHHH
Q 032453 47 AKATFSKESDKVDKAKVAGAAENLVA 72 (140)
Q Consensus 47 Aqs~~~~es~kvDK~kVAgAAadlL~ 72 (140)
|+..+++.+++|| ..-.-|+|.++
T Consensus 5 ak~~~~~~~dk~~--~~iDKA~d~vd 28 (51)
T PF14013_consen 5 AKDLASKNPDKID--QGIDKAGDFVD 28 (51)
T ss_pred HHHHHHHChHHHH--HHHHHHHHHHH
Confidence 4455555556665 23444555554
Done!