Query 032453
Match_columns 140
No_of_seqs 29 out of 31
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 23:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6h_B Talin; protein-protein 42.6 15 0.00053 21.5 2.1 16 34-49 6-21 (31)
2 2fft_A Thylakoid soluble phosp 38.3 27 0.00091 24.9 3.1 15 81-95 11-25 (84)
3 3rf3_A Vinculin, metavinculin; 35.7 80 0.0027 25.2 5.9 67 33-99 78-151 (258)
4 1yvw_A PRA-PH, phosphoribosyl- 35.2 31 0.0011 25.2 3.2 37 33-71 25-67 (115)
5 2a7w_A PRA-PH, phosphoribosyl- 34.8 45 0.0015 24.4 4.0 37 33-71 26-68 (116)
6 2i7u_A Four-alpha-helix bundle 30.3 22 0.00077 23.8 1.6 14 122-135 29-42 (62)
7 2e2c_A Ubiquitin conjugating e 25.7 43 0.0015 24.1 2.5 26 72-99 130-155 (156)
8 2v6y_A AAA family ATPase, P60 25.3 47 0.0016 22.0 2.5 31 66-97 36-75 (83)
9 1yxb_A PRA-PH, phosphoribosyl- 24.5 51 0.0018 23.4 2.7 29 41-71 41-69 (98)
10 1dow_A Alpha-catenin; four-hel 22.4 2.2E+02 0.0075 22.1 6.2 66 33-98 38-110 (205)
11 3qqa_A CMER; alpha-helical, he 21.7 78 0.0027 21.1 3.0 30 39-68 20-50 (216)
12 2l7a_A Talin-1; vinculin, bund 20.5 1.5E+02 0.0051 21.9 4.6 19 62-80 82-100 (131)
No 1
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=42.58 E-value=15 Score=21.50 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=12.2
Q ss_pred HHHHHhHHHHHHHHHH
Q 032453 34 AELMASAKCVAEAAKA 49 (140)
Q Consensus 34 ~eLmaSaKvvaeAAqs 49 (140)
--|+..||.|+||..-
T Consensus 6 ~rLl~aak~vaeata~ 21 (31)
T 1u6h_B 6 RKLLSAAKILADATAK 21 (31)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3588888888888654
No 2
>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1
Probab=38.30 E-value=27 Score=24.93 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=8.1
Q ss_pred cchhhHHHHHHHHHh
Q 032453 81 EENKYVDKAKDYLHQ 95 (140)
Q Consensus 81 dekqYvdKAe~YL~~ 95 (140)
+||..+|---+.|.+
T Consensus 11 eEKgl~D~i~G~i~K 25 (84)
T 2fft_A 11 QEKSFVDWLLGKITK 25 (84)
T ss_dssp CCCSHHHHHHHHHSC
T ss_pred ccccHHHHHhhhhhh
Confidence 445556655555544
No 3
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=35.68 E-value=80 Score=25.20 Aligned_cols=67 Identities=9% Similarity=0.040 Sum_probs=51.5
Q ss_pred hHHHHHhHHHHHHHHHHhhccccccchhhHHhhhHHHHHHhhhhhccccch-------hhHHHHHHHHHhhhcC
Q 032453 33 NAELMASAKCVAEAAKATFSKESDKVDKAKVAGAAENLVAAGSKYGNLEEN-------KYVDKAKDYLHQYHSS 99 (140)
Q Consensus 33 s~eLmaSaKvvaeAAqs~~~~es~kvDK~kVAgAAadlL~Aas~YGKLdek-------qYvdKAe~YL~~y~s~ 99 (140)
-.++-.+++.+..||+.-..+-....++.++-.||-.||.+..+-==|.|- .-+++.++||.....-
T Consensus 78 ~~~v~~ag~~l~~aa~~~~~dP~s~~~R~~lV~aAR~lLs~vtrlLllaD~~dVr~il~~~~~v~~~l~~l~~~ 151 (258)
T 3rf3_A 78 FIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVV 151 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356667788888888765555447889999999999999998776555555 7788899999877653
No 4
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=35.24 E-value=31 Score=25.23 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=26.7
Q ss_pred hHHHHHh------HHHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032453 33 NAELMAS------AKCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (140)
Q Consensus 33 s~eLmaS------aKvvaeAAqs~~~~es~kvDK~kVAgAAadlL 71 (140)
+.-|++. -||.-||+..++--+ .-|+..|+.-+||||
T Consensus 25 T~~L~~kG~~kI~kKvgEEA~E~iiAak--~~d~~~l~~E~ADLl 67 (115)
T 1yvw_A 25 TNYLFSKGEDKILKKIGEECAEVIIACK--NNDKEEVVKEMVDVF 67 (115)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 6777766 577777776655444 247889999999986
No 5
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=34.79 E-value=45 Score=24.37 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=26.0
Q ss_pred hHHHHHh------HHHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032453 33 NAELMAS------AKCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (140)
Q Consensus 33 s~eLmaS------aKvvaeAAqs~~~~es~kvDK~kVAgAAadlL 71 (140)
+.-|++. -||.-||+..++--+. =|+..|+.-+||||
T Consensus 26 T~~L~~kG~~kI~kKvgEEA~E~iiAak~--~d~~el~~E~ADLl 68 (116)
T 2a7w_A 26 VASLFHKGEDAILKKVAEEAAETLMASKD--KDKLHLVREVADLW 68 (116)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHH
Confidence 6677765 4666677666554442 47889999999986
No 6
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=30.31 E-value=22 Score=23.81 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=8.4
Q ss_pred CCCCCchhHHHhhh
Q 032453 122 PSGGGYGDYLKTAQ 135 (140)
Q Consensus 122 ~~G~G~Gg~~KmAq 135 (140)
++|||+|-++|+..
T Consensus 29 gggggggelmklce 42 (62)
T 2i7u_A 29 GGGGGGGELMKLCE 42 (62)
T ss_dssp SSCSSSCHHHHHHH
T ss_pred CCCCchHHHHHHHH
Confidence 34566676777643
No 7
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=25.70 E-value=43 Score=24.10 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=20.7
Q ss_pred HhhhhhccccchhhHHHHHHHHHhhhcC
Q 032453 72 AAGSKYGNLEENKYVDKAKDYLHQYHSS 99 (140)
Q Consensus 72 ~Aas~YGKLdekqYvdKAe~YL~~y~s~ 99 (140)
+||..| + |...|..+|..|.++|.+.
T Consensus 130 ~aa~~~-~-d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 130 QAADMW-S-NQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp HHHHHT-T-CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHh-c-CHHHHHHHHHHHHHHhccC
Confidence 456778 5 6669999999999998753
No 8
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=25.27 E-value=47 Score=22.00 Aligned_cols=31 Identities=10% Similarity=-0.031 Sum_probs=19.1
Q ss_pred hHHHHHHhhhhhccccch---------hhHHHHHHHHHhhh
Q 032453 66 AAENLVAAGSKYGNLEEN---------KYVDKAKDYLHQYH 97 (140)
Q Consensus 66 AAadlL~Aas~YGKLdek---------qYvdKAe~YL~~y~ 97 (140)
-|.++|--+.+|.+-+.. +|++.||. |+.+-
T Consensus 36 ~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~-Lk~~l 75 (83)
T 2v6y_A 36 KAIEVLSQIIVLYPESVARTAYEQMINEYKKRISY-LEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHH-HTTCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHc
Confidence 456777777888853332 67777764 34443
No 9
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=24.47 E-value=51 Score=23.42 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032453 41 KCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (140)
Q Consensus 41 KvvaeAAqs~~~~es~kvDK~kVAgAAadlL 71 (140)
||.-||+...+--+. =|+.+|+.-+||||
T Consensus 41 KvgEEA~E~iiAak~--~d~~~l~~E~ADLl 69 (98)
T 1yxb_A 41 KVVEEAAEVWMAAEY--EGKDAAAEEISQLL 69 (98)
T ss_dssp HHHHHHHHHHHHHHH--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCHHHHHHHHHHHH
Confidence 677777666554432 47888999999987
No 10
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=22.40 E-value=2.2e+02 Score=22.12 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=51.9
Q ss_pred hHHHHHhHHHHHHHHHHhhccccccchhhHHhhhHHHHHHhhhhhccccch-------hhHHHHHHHHHhhhc
Q 032453 33 NAELMASAKCVAEAAKATFSKESDKVDKAKVAGAAENLVAAGSKYGNLEEN-------KYVDKAKDYLHQYHS 98 (140)
Q Consensus 33 s~eLmaSaKvvaeAAqs~~~~es~kvDK~kVAgAAadlL~Aas~YGKLdek-------qYvdKAe~YL~~y~s 98 (140)
-.|+-.+++.+..|++.-..+.....++.++-.||-.||.+..+-==|-|- +=+++.++||..-..
T Consensus 38 ~~~v~~ag~~l~~a~~~~~~dP~s~~~R~~lV~aaR~lLs~vtrlLllaD~~~Vrkil~~~~~v~~~L~~le~ 110 (205)
T 1dow_A 38 VEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRN 110 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467778888999998885555558899999999999999999876666555 556778888877664
No 11
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=21.65 E-value=78 Score=21.09 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhhcccc-ccchhhHHhhhHH
Q 032453 39 SAKCVAEAAKATFSKES-DKVDKAKVAGAAE 68 (140)
Q Consensus 39 SaKvvaeAAqs~~~~es-~kvDK~kVAgAAa 68 (140)
.=.-|.+||...|..++ +.+--..||.+|.
T Consensus 20 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~ag 50 (216)
T 3qqa_A 20 RQEKIKAVALELFLTKGYQETSLSDIIKLSG 50 (216)
T ss_dssp HHHHHHHHHHHHHHHTCTTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcChhhCCHHHHHHHhC
Confidence 34567788888898887 8888788887764
No 12
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=20.49 E-value=1.5e+02 Score=21.85 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=13.6
Q ss_pred HHhhhHHHHHHhhhhhccc
Q 032453 62 KVAGAAENLVAAGSKYGNL 80 (140)
Q Consensus 62 kVAgAAadlL~Aas~YGKL 80 (140)
.|+.|.+.+..+|..|-.=
T Consensus 82 ~La~At~~MVeaAK~~A~N 100 (131)
T 2l7a_A 82 ILADATAKMVEAAKGAAAH 100 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4777777788887777654
Done!