Query 032453
Match_columns 140
No_of_seqs 29 out of 31
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 23:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032453.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032453hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yxba1 a.204.1.4 (A:4-91) Pho 44.7 7.5 0.00055 25.5 2.8 57 1-71 3-66 (88)
2 d1dova_ a.24.9.1 (A:) alpha-ca 44.5 22 0.0016 25.3 5.6 67 33-99 13-86 (181)
3 d1eaka1 a.20.1.2 (A:32-107) Ge 39.8 6 0.00044 25.6 1.6 14 85-98 15-28 (76)
4 d1su3a1 a.20.1.2 (A:32-98) Fib 35.1 5.9 0.00043 24.5 0.9 13 87-99 1-13 (67)
5 d1sj8a2 a.216.1.1 (A:658-782) 34.3 35 0.0025 22.0 5.0 42 33-74 8-56 (125)
6 d1wr0a1 a.7.14.1 (A:5-81) Vacu 33.7 18 0.0013 22.0 3.2 17 65-81 35-51 (77)
7 d1l6ja1 a.20.1.2 (A:29-105) Ge 33.2 8.7 0.00064 24.0 1.6 13 86-98 14-26 (77)
8 d1lh0a_ c.61.1.1 (A:) Orotate 31.1 13 0.00097 26.7 2.5 28 68-97 185-212 (213)
9 d2bykb1 a.22.1.3 (B:11-99) Chr 25.6 29 0.0021 21.5 3.2 29 66-97 55-83 (89)
10 d1slma1 a.20.1.2 (A:16-80) Str 21.6 16 0.0012 22.3 1.2 10 89-98 2-11 (65)
11 d2a7wa1 a.204.1.4 (A:4-94) Pho 21.6 45 0.0033 21.5 3.6 56 2-71 4-65 (91)
No 1
>d1yxba1 a.204.1.4 (A:4-91) Phosphoribosyl-ATP pyrophosphatase HisE {Streptomyces coelicolor [TaxId: 1902]}
Probab=44.69 E-value=7.5 Score=25.53 Aligned_cols=57 Identities=33% Similarity=0.424 Sum_probs=32.5
Q ss_pred CchhhhhhhccccCCC-ccccCCCCCCCCCCCChHHHHHh------HHHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032453 1 MDSLFSKLQNKEDSKS-ATAHNENPTKEHHQPSNAELMAS------AKCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (140)
Q Consensus 1 ~~~~~~~~~~~~~s~~-~~~H~~p~~~~h~~pss~eLmaS------aKvvaeAAqs~~~~es~kvDK~kVAgAAadlL 71 (140)
+|.||..+.++..+.+ ..+. +..|+.. -||.-||..-..--. +=|+.+|..-+||||
T Consensus 3 ~e~L~~~i~~r~~~~~p~~SY------------t~~L~~~G~~~i~kKv~EEa~E~i~A~~--~~~~~~~i~EaADLl 66 (88)
T d1yxba1 3 FEELFTELQHKAANGDPATSR------------TAELVDKGVHAIGKKVVEEAAEVWMAAE--YEGKDAAAEEISQLL 66 (88)
T ss_dssp HHHHHHHHHHHTCC----CCS------------SCCHHHHCHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcccH------------HHHHHHCcHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Confidence 3678888887654433 3331 3344443 266656655433322 236889999999987
No 2
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.49 E-value=22 Score=25.33 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=53.2
Q ss_pred hHHHHHhHHHHHHHHHHhhccccccchhhHHhhhHHHHHHhhhhhccccch-------hhHHHHHHHHHhhhcC
Q 032453 33 NAELMASAKCVAEAAKATFSKESDKVDKAKVAGAAENLVAAGSKYGNLEEN-------KYVDKAKDYLHQYHSS 99 (140)
Q Consensus 33 s~eLmaSaKvvaeAAqs~~~~es~kvDK~kVAgAAadlL~Aas~YGKLdek-------qYvdKAe~YL~~y~s~ 99 (140)
-.++-.++..+..|++.-..+....+++..+..||-.||.+..+-==|.|. ...++.++||.....-
T Consensus 13 ~~~v~~ag~~l~~aa~~~~~dp~s~~~R~~lv~aaR~lLs~vt~lLllaD~~~Vr~il~~~~~v~~~l~~le~v 86 (181)
T d1dova_ 13 VEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNA 86 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777888999999875554447789999999999999998776666665 7778999999877643
No 3
>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.80 E-value=6 Score=25.59 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=11.5
Q ss_pred hHHHHHHHHHhhhc
Q 032453 85 YVDKAKDYLHQYHS 98 (140)
Q Consensus 85 YvdKAe~YL~~y~s 98 (140)
=++.|++||++|.-
T Consensus 15 d~e~A~~YL~~fgy 28 (76)
T d1eaka1 15 DKELAVQYLNTFYG 28 (76)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHhCC
Confidence 35789999999974
No 4
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.10 E-value=5.9 Score=24.51 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhcC
Q 032453 87 DKAKDYLHQYHSS 99 (140)
Q Consensus 87 dKAe~YL~~y~s~ 99 (140)
|-|++||++|.--
T Consensus 1 ~l~~~YL~~fgyl 13 (67)
T d1su3a1 1 DLVQKYLEKYYNL 13 (67)
T ss_dssp CHHHHHHHHHSCC
T ss_pred CHHHHHHHHhCCC
Confidence 4689999999753
No 5
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.32 E-value=35 Score=22.04 Aligned_cols=42 Identities=29% Similarity=0.220 Sum_probs=29.7
Q ss_pred hHHHHHhHHHHHHHHHHhhc-------cccccchhhHHhhhHHHHHHhh
Q 032453 33 NAELMASAKCVAEAAKATFS-------KESDKVDKAKVAGAAENLVAAG 74 (140)
Q Consensus 33 s~eLmaSaKvvaeAAqs~~~-------~es~kvDK~kVAgAAadlL~Aa 74 (140)
...|+..||.|+++.+.-+. .-.+.....+|..++-.|....
T Consensus 8 ~e~Li~~AK~va~a~~~Lv~~ak~~a~~~~d~~~q~~Li~aa~~v~~~t 56 (125)
T d1sj8a2 8 QDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALST 56 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 57899999999888776443 2335667777777777776654
No 6
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.66 E-value=18 Score=21.98 Aligned_cols=17 Identities=18% Similarity=0.016 Sum_probs=11.9
Q ss_pred hhHHHHHHhhhhhcccc
Q 032453 65 GAAENLVAAGSKYGNLE 81 (140)
Q Consensus 65 gAAadlL~Aas~YGKLd 81 (140)
--|.++|-.+.+|.--+
T Consensus 35 ~~a~~~l~~~l~~e~~~ 51 (77)
T d1wr0a1 35 QHAVQYFLHVVKYEAQG 51 (77)
T ss_dssp HHHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHHhccCCC
Confidence 45678888888887443
No 7
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.19 E-value=8.7 Score=23.96 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhc
Q 032453 86 VDKAKDYLHQYHS 98 (140)
Q Consensus 86 vdKAe~YL~~y~s 98 (140)
++.|+.||++|.-
T Consensus 14 ~~~a~~yL~~fGY 26 (77)
T d1l6ja1 14 RQLAEEYLYRYGY 26 (77)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 4669999999984
No 8
>d1lh0a_ c.61.1.1 (A:) Orotate PRTase {Salmonella typhimurium [TaxId: 90371]}
Probab=31.13 E-value=13 Score=26.71 Aligned_cols=28 Identities=11% Similarity=0.275 Sum_probs=22.9
Q ss_pred HHHHHhhhhhccccchhhHHHHHHHHHhhh
Q 032453 68 ENLVAAGSKYGNLEENKYVDKAKDYLHQYH 97 (140)
Q Consensus 68 adlL~Aas~YGKLdekqYvdKAe~YL~~y~ 97 (140)
.|||+.+...+++. +++++-++|+.+|.
T Consensus 185 ~dl~~~l~~~~~~~--~~~~~i~~y~~~yg 212 (213)
T d1lh0a_ 185 KDLIAYLEEKPDMA--EHLAAVRAYREEFG 212 (213)
T ss_dssp HHHHHHHHHCGGGH--HHHHHHHHHHHHHB
T ss_pred HHHHHHHHHcCccH--HHHHHHHHHHHHcC
Confidence 58888887777775 48999999999995
No 9
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=25.65 E-value=29 Score=21.53 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=22.8
Q ss_pred hHHHHHHhhhhhccccchhhHHHHHHHHHhhh
Q 032453 66 AAENLVAAGSKYGNLEENKYVDKAKDYLHQYH 97 (140)
Q Consensus 66 AAadlL~Aas~YGKLdekqYvdKAe~YL~~y~ 97 (140)
...||+.|....| ++ .|++--+.||+.|.
T Consensus 55 ~~~dv~~Al~~~~-f~--~~~~~l~~~l~~~~ 83 (89)
T d2bykb1 55 TAKDILQTLTELD-FE--SFVPSLTQDLEVYR 83 (89)
T ss_dssp CHHHHHHHHHHTT-CT--TTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCC-cH--HHHHHHHHHHHHHH
Confidence 4578888887766 43 49999999999986
No 10
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=21.60 E-value=16 Score=22.31 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=8.6
Q ss_pred HHHHHHhhhc
Q 032453 89 AKDYLHQYHS 98 (140)
Q Consensus 89 Ae~YL~~y~s 98 (140)
|++||++|.-
T Consensus 2 ~~~YL~~fgy 11 (65)
T d1slma1 2 VQKYLENYYD 11 (65)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHcCC
Confidence 7899999974
No 11
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE {Chromobacterium violaceum [TaxId: 536]}
Probab=21.56 E-value=45 Score=21.47 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=32.2
Q ss_pred chhhhhhhccccCCCccccCCCCCCCCCCCChHHHHHh------HHHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032453 2 DSLFSKLQNKEDSKSATAHNENPTKEHHQPSNAELMAS------AKCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (140)
Q Consensus 2 ~~~~~~~~~~~~s~~~~~H~~p~~~~h~~pss~eLmaS------aKvvaeAAqs~~~~es~kvDK~kVAgAAadlL 71 (140)
+.||..+.....++|..+ =+..|+.. -||.=||..-..--. +=|+..|..-+||||
T Consensus 4 ~~L~~~i~~Rk~~~~~~S------------Yt~~L~~~G~~~i~kKigEEa~E~i~A~~--~~~~~~vi~EaADLl 65 (91)
T d2a7wa1 4 KNIADTLEARREAAPQSS------------YVASLFHKGEDAILKKVAEEAAETLMASK--DKDKLHLVREVADLW 65 (91)
T ss_dssp HHHHHHHHHGGGSCTTTC------------HHHHHHHHCHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccc------------HHHHHHhCChHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHH
Confidence 456666666555544443 15667654 244444444332211 235888999999987
Done!