Query 032454
Match_columns 140
No_of_seqs 109 out of 1078
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 23:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_N 50S ribosomal protein L 100.0 1.1E-48 3.7E-53 292.7 10.1 96 1-96 24-119 (120)
2 2cqm_A Ribosomal protein L17 i 100.0 3.4E-48 1.2E-52 290.6 9.9 96 1-96 12-109 (122)
3 1gd8_A 50S ribosomal protein L 100.0 3.5E-48 1.2E-52 289.2 9.5 94 1-94 24-118 (118)
4 2zjr_K 50S ribosomal protein L 100.0 7.6E-48 2.6E-52 286.7 9.7 93 1-93 24-116 (116)
5 3bbo_P Ribosomal protein L17; 100.0 3.1E-45 1.1E-49 293.3 7.7 93 1-93 113-205 (205)
6 1sy9_B Cyclic-nucleotide-gated 50.4 0.96 3.3E-05 24.9 -2.2 12 66-77 2-13 (26)
7 1t6s_A Conserved hypothetical 43.9 23 0.0008 26.6 3.9 54 17-72 4-60 (162)
8 2z99_A Putative uncharacterize 28.4 96 0.0033 24.5 5.3 52 19-72 14-66 (219)
9 3h0d_A CTSR; protein DNA compl 21.8 28 0.00095 26.5 0.9 13 68-80 63-75 (155)
10 1x4p_A Putative splicing facto 18.1 16 0.00055 24.3 -1.0 39 20-58 6-52 (66)
No 1
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=100.00 E-value=1.1e-48 Score=292.68 Aligned_cols=96 Identities=50% Similarity=0.810 Sum_probs=94.6
Q ss_pred ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454 1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR 80 (140)
Q Consensus 1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R 80 (140)
|+||||+||+|+||++||||+|+|||+|||+||+|++|++|+|.+||.|+++|+|||++|+|||++|+||||||+|+|+|
T Consensus 24 l~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~elapry~~R~GGYTRI~K~~~R 103 (120)
T 3r8s_N 24 MAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFR 103 (120)
T ss_dssp HHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHHHTHHHHTTTCCSCCEEEEEEEEC
T ss_pred HHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEeecCc
Q 032454 81 VGDAAPMAYIEFVDRE 96 (140)
Q Consensus 81 ~GD~A~maiIELVd~~ 96 (140)
.||+||||||||||++
T Consensus 104 ~GD~A~maiiELVd~~ 119 (120)
T 3r8s_N 104 AGDNAPMAYIELVDRS 119 (120)
T ss_dssp TTTCCEEEEEEESSCC
T ss_pred CCCCcCeEEEEEecCC
Confidence 9999999999999974
No 2
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=100.00 E-value=3.4e-48 Score=290.63 Aligned_cols=96 Identities=43% Similarity=0.627 Sum_probs=93.7
Q ss_pred ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHH--HHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEccc
Q 032454 1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLC--AARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSR 78 (140)
Q Consensus 1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~--~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~ 78 (140)
|+|+||+||||+||++||||+|+|||+|||+||+|++| ++|++.+||.|+++|+|||++|+|||++|+||||||+|++
T Consensus 12 l~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~~R~GGYTRI~K~~ 91 (122)
T 2cqm_A 12 LLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIP 91 (122)
T ss_dssp HHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHSCSCCEEEEEEC
T ss_pred HHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCeeEEEECC
Confidence 68999999999999999999999999999999999998 5799999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeEEEeecCc
Q 032454 79 IRVGDAAPMAYIEFVDRE 96 (140)
Q Consensus 79 ~R~GD~A~maiIELVd~~ 96 (140)
+|.||+||||||||||+|
T Consensus 92 ~R~GD~A~maiIELVd~p 109 (122)
T 2cqm_A 92 NRSLDRAKMAVIEYKGNC 109 (122)
T ss_dssp CCSSSCCCEEEEEESSCC
T ss_pred CCCCCCCCeEEEEeCCCC
Confidence 999999999999999985
No 3
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=100.00 E-value=3.5e-48 Score=289.16 Aligned_cols=94 Identities=45% Similarity=0.722 Sum_probs=93.0
Q ss_pred ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEccc-C
Q 032454 1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSR-I 79 (140)
Q Consensus 1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~-~ 79 (140)
|+||||+||+|+||++||||+|+|||+|||+||+|++|++|+|.+||.|+++|+|||++|+|||++|+||||||+|++ +
T Consensus 24 l~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF~~iapry~~R~GGYTRI~K~~~~ 103 (118)
T 1gd8_A 24 QAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAER 103 (118)
T ss_dssp HHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTSSCCSCCEEEEEEEEE
T ss_pred HHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCeEEEEECCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCCCCeeEEEeec
Q 032454 80 RVGDAAPMAYIEFVD 94 (140)
Q Consensus 80 R~GD~A~maiIELVd 94 (140)
|.||+||||||||||
T Consensus 104 R~GD~A~maiiELVd 118 (118)
T 1gd8_A 104 RRGDGAPLALVELVE 118 (118)
T ss_dssp CTTTCCEEEEEEECC
T ss_pred CCCCCCCeEEEEecC
Confidence 999999999999997
No 4
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=100.00 E-value=7.6e-48 Score=286.65 Aligned_cols=93 Identities=40% Similarity=0.662 Sum_probs=91.3
Q ss_pred ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454 1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR 80 (140)
Q Consensus 1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R 80 (140)
|+||||+||+|+||++||||+|+|||+|||+||+|++|++|+|.+||.|+++|+|||++|+|||++|+||||||+|+++|
T Consensus 24 l~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~~iapry~~R~GGYTRI~K~~~R 103 (116)
T 2zjr_K 24 QATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTR 103 (116)
T ss_dssp HHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTTTSCSCCCEEEECCCC
T ss_pred HHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCeeEEEECCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEee
Q 032454 81 VGDAAPMAYIEFV 93 (140)
Q Consensus 81 ~GD~A~maiIELV 93 (140)
.||+|||||||||
T Consensus 104 ~GD~A~maiiElV 116 (116)
T 2zjr_K 104 RGDGVTMALIELV 116 (116)
T ss_dssp TTTCCCEEEEEC-
T ss_pred CCCCCceEEEEeC
Confidence 9999999999997
No 5
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=3.1e-45 Score=293.35 Aligned_cols=93 Identities=48% Similarity=0.846 Sum_probs=92.1
Q ss_pred ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454 1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR 80 (140)
Q Consensus 1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R 80 (140)
|+|+||+||||+||++||||+|+|||+|||+||+|++|++|+|.+||+|+++|+|||++|+|||++|+||||||+|+++|
T Consensus 113 LvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V~KLF~eiaPRY~dR~GGYTRIlKlg~R 192 (205)
T 3bbo_P 113 LTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPR 192 (205)
T ss_dssp HHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHTTSSGGGGSSCCSCCEECCBCSCC
T ss_pred HHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCeeEEEECCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEee
Q 032454 81 VGDAAPMAYIEFV 93 (140)
Q Consensus 81 ~GD~A~maiIELV 93 (140)
.||+|||||||||
T Consensus 193 ~GD~ApMAiIELV 205 (205)
T 3bbo_P 193 RGDNAPMAYIELV 205 (205)
T ss_dssp SSSCCCCEEEEEC
T ss_pred CCCCcceEEEEeC
Confidence 9999999999998
No 6
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=50.45 E-value=0.96 Score=24.90 Aligned_cols=12 Identities=42% Similarity=0.888 Sum_probs=10.3
Q ss_pred CCCCCeEEEEcc
Q 032454 66 DRAGGYTRLLRS 77 (140)
Q Consensus 66 ~R~GGYTRI~kl 77 (140)
.|.|||.||.++
T Consensus 2 qrrggfrri~rl 13 (26)
T 1sy9_B 2 QRRGGFRRIARL 13 (26)
T ss_pred ccchhHHHHHHH
Confidence 588999999886
No 7
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=43.92 E-value=23 Score=26.63 Aligned_cols=54 Identities=9% Similarity=0.190 Sum_probs=37.5
Q ss_pred HHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcC---ChhHHHHHHHHHHHHhCCCCCCeE
Q 032454 17 KAKEVRRLADNMVQLGKEGSLCAARRAAAFVR---GDDVIHKLFTELAYRYKDRAGGYT 72 (140)
Q Consensus 17 KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~---~~~~v~KLf~~lapRy~~R~GGYT 72 (140)
...++...+|-++-.+-.+ +. .......+. +.+.+..+.++|..+|.+++.|+.
T Consensus 4 ~~~~~~~~iEAlLf~~~~p-vs-~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~ 60 (162)
T 1t6s_A 4 QRQQLLRSLEALIFSSEEP-VN-LQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFR 60 (162)
T ss_dssp HHHHHHHHHHHHHHHCSSC-BC-HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred cHHHHHHHHHHHHHHcCCC-CC-HHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEE
Confidence 3567788899999888332 33 333334443 567899999999999986666653
No 8
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=28.41 E-value=96 Score=24.48 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=36.1
Q ss_pred HHHHHhHHHHHHhhcCCCHHHHHHHHHhc-CChhHHHHHHHHHHHHhCCCCCCeE
Q 032454 19 KEVRRLADNMVQLGKEGSLCAARRAAAFV-RGDDVIHKLFTELAYRYKDRAGGYT 72 (140)
Q Consensus 19 Kelr~~aErLIt~AK~g~~~~~r~a~~~L-~~~~~v~KLf~~lapRy~~R~GGYT 72 (140)
.+++..+|-++-.+-.. +...+++ ..+ .+...+..+.++|..+|.+++.|+.
T Consensus 14 ~~l~~~iEAlLf~a~ep-vs~~~La-~~l~~~~~~v~~~l~~L~~~y~~~~rGie 66 (219)
T 2z99_A 14 DELKRVLEALLLVIDTP-VTADALA-AATEQPVYRVAAKLQLMADELTGRDSGID 66 (219)
T ss_dssp HHHHHHHHHHHHHCSSC-BCHHHHH-HHHTSCHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHH-HHHCcCHHHHHHHHHHHHHHHhhCCCCEE
Confidence 45677899998887544 3333333 333 4667899999999999987766654
No 9
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=21.85 E-value=28 Score=26.48 Aligned_cols=13 Identities=31% Similarity=0.966 Sum_probs=10.6
Q ss_pred CCCeEEEEcccCC
Q 032454 68 AGGYTRLLRSRIR 80 (140)
Q Consensus 68 ~GGYTRI~kl~~R 80 (140)
.|||-||.|+...
T Consensus 63 GGGyIRI~kv~~~ 75 (155)
T 3h0d_A 63 GGGYIRIMKVKTK 75 (155)
T ss_dssp TTCEEEEEEEEEC
T ss_pred CCceEEEEEeccC
Confidence 5699999998753
No 10
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=18.11 E-value=16 Score=24.30 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=27.3
Q ss_pred HHHHhHHHHHHhhcCCCHH-------HHHHHHHhcCChhH-HHHHHH
Q 032454 20 EVRRLADNMVQLGKEGSLC-------AARRAAAFVRGDDV-IHKLFT 58 (140)
Q Consensus 20 elr~~aErLIt~AK~g~~~-------~~r~a~~~L~~~~~-v~KLf~ 58 (140)
+++..+|+|......|.+. .-.-+++||.|++. -.|-|.
T Consensus 6 ~~~~~ieKLa~fVaeGgpe~~~~a~~k~nPaf~FL~D~~S~eykYYr 52 (66)
T 1x4p_A 6 SGVGTIDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSLEYKYYK 52 (66)
T ss_dssp CSSHHHHHHHHHHHHTCSCHHHHHHHHHSGGGCTTTCCSSSHHHHHH
T ss_pred hHHHHHHHHHHHHHccCCcHHHHHHcccCCceeeeeCCCcHHHHHHH
Confidence 4677899999998888652 23467789999863 444444
Done!