RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032454
         (140 letters)



>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
           {Escherichia coli [TaxId: 562]}
          Length = 120

 Score =  112 bits (282), Expect = 8e-34
 Identities = 48/96 (50%), Positives = 64/96 (66%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL
Sbjct: 24  MAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNEL 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRE 96
             R+  RAGGYTR+L+   R GD APMAYIE VDR 
Sbjct: 84  GPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119


>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score =  108 bits (272), Expect = 2e-32
 Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 8/111 (7%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA--RRAAAFVRGDDVIHKLFT 58
           +++ LV+HERIE   A+  E+R  A+ ++  GK G       R A  ++   D+I KLF 
Sbjct: 5   LLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQ 64

Query: 59  ELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQP 109
            LA RYKD+ GGYTR+L+   R  D A MA IE+           P +P P
Sbjct: 65  VLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEYKGNC------LPPLPLP 109


>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus
           thermophilus [TaxId: 274]}
          Length = 105

 Score =  105 bits (263), Expect = 4e-31
 Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
               L+ H RI TTV KAKE+R   D+++ L K G L A R     ++   ++ KLF E+
Sbjct: 11  QAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEI 70

Query: 61  AYRYKDRAGGYTRLLR-SRIRVGDAAPMAYIEFVD 94
           A RY+DR GGYTR+L+ +  R GD AP+A +E V+
Sbjct: 71  APRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE 105


>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 113

 Score =  102 bits (257), Expect = 4e-30
 Identities = 36/91 (39%), Positives = 53/91 (58%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             + L++  RI+TT+ KAKE+R   + ++   K G L + R  A  +   DV+ K+  E+
Sbjct: 22  QATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEV 81

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 91
           A +Y +R GGYTR+LR   R GD   MA IE
Sbjct: 82  APKYAERPGGYTRILRVGTRRGDGVTMALIE 112


>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 117

 Score = 24.0 bits (51), Expect = 5.9
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 7/53 (13%)

Query: 80  RVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQ 132
           R+GD +P              ++   VP PP          + +   + PP  
Sbjct: 1   RIGDGSPSHPPILE-------RTLDDVPGPPMGILFPEVRTTSVRLIWQPPAA 46


>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 93

 Score = 23.5 bits (50), Expect = 7.1
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 86  PMAYIEFVDRENELRQSKPAVPQPPPRAALDP 117
           P  Y+E +      +   P     PP  +L  
Sbjct: 55  PCNYVEKMPSSENEKAVSPKKALLPPTVSLSA 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 496,219
Number of extensions: 21510
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 6
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)