Query 032455
Match_columns 140
No_of_seqs 112 out of 224
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 23:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_H RP30, RP40, 40S ribosom 100.0 1.3E-79 4.6E-84 491.3 14.3 139 1-139 49-189 (190)
2 2xzm_3 RPS7E, 40S ribosomal pr 100.0 2.6E-68 8.8E-73 428.2 11.9 138 1-139 48-190 (197)
3 2cxc_A NUSA; transcription ter 71.1 3.9 0.00013 30.7 3.7 101 9-132 37-137 (144)
4 3bwd_D RAC-like GTP-binding pr 50.3 39 0.0013 22.8 5.5 44 8-51 81-124 (182)
5 3reg_A RHO-like small GTPase; 49.1 42 0.0014 23.3 5.7 45 8-52 96-140 (194)
6 4gzl_A RAS-related C3 botulinu 48.4 39 0.0013 24.1 5.5 45 7-51 102-146 (204)
7 1mh1_A RAC1; GTP-binding, GTPa 47.7 46 0.0016 22.5 5.6 44 8-51 78-121 (186)
8 2atx_A Small GTP binding prote 47.4 44 0.0015 23.1 5.6 44 8-51 91-134 (194)
9 2q3h_A RAS homolog gene family 46.1 47 0.0016 23.1 5.6 44 8-51 93-136 (201)
10 2j0v_A RAC-like GTP-binding pr 40.3 63 0.0021 22.7 5.5 44 8-51 82-125 (212)
11 2fv8_A H6, RHO-related GTP-bin 39.6 65 0.0022 22.8 5.6 43 8-50 98-140 (207)
12 2j1l_A RHO-related GTP-binding 39.6 77 0.0026 22.6 6.0 45 7-51 106-150 (214)
13 2gco_A H9, RHO-related GTP-bin 39.1 67 0.0023 22.6 5.5 44 8-51 98-141 (201)
14 1m7b_A RND3/RHOE small GTP-bin 38.9 75 0.0026 21.8 5.7 46 7-52 79-124 (184)
15 1qp6_A Protein (alpha2D); de n 37.7 7.3 0.00025 23.1 0.1 8 30-37 3-10 (35)
16 1gwn_A RHO-related GTP-binding 34.7 89 0.003 22.4 5.7 44 8-51 101-144 (205)
17 3q3j_B RHO-related GTP-binding 32.1 91 0.0031 22.4 5.4 45 8-52 100-144 (214)
18 1wjw_A Phosphoacetylglucosamin 28.6 43 0.0015 23.3 2.9 40 89-128 58-98 (112)
19 2wkq_A NPH1-1, RAS-related C3 26.6 1.3E+02 0.0045 22.5 5.5 44 8-51 228-271 (332)
20 2erx_A GTP-binding protein DI- 20.7 1.8E+02 0.0062 18.9 4.8 43 9-51 77-121 (172)
21 3gj0_A GTP-binding nuclear pro 20.6 2E+02 0.0069 20.3 5.3 43 8-51 89-131 (221)
22 2yc2_C IFT27, small RAB-relate 20.5 2.1E+02 0.0072 19.5 6.1 43 8-51 98-144 (208)
No 1
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=100.00 E-value=1.3e-79 Score=491.30 Aligned_cols=139 Identities=52% Similarity=0.907 Sum_probs=134.5
Q ss_pred CeecCCeeEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccCCCCCCC--cccccCCcchhHHHHHhhhc
Q 032455 1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLED 78 (140)
Q Consensus 1 i~v~~~kkaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~k~--~q~rPRsRTLTaVhdaiLeD 78 (140)
||||||+||||||||+|||++|||||.||++||||||||+||+|||||||||||++++ +|+|||||||||||||||||
T Consensus 49 iev~~~kKAivIfVP~p~lk~f~KIq~rLvrELEKKfsgkhVvfiAqRrIlpkp~r~~~~kqkRPRSRTLTaVhdaiLeD 128 (190)
T 3u5c_H 49 IDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILED 128 (190)
T ss_dssp EECTTSCEEEEEEECSSSHHHHHHHTHHHHHHHHHTTCSEEEEEEECCCCCCCCCSSSCCCSCCCGGGSHHHHHHHHHHH
T ss_pred EEecCCcEEEEEEecHHHHHHHHHHHHHHHHHHHhccCCCEEEEEecceEcCCCccCCcccccCCCCCchhHHHHHHHhh
Confidence 5899999999999999999999999999999999999999999999999999998887 49999999999999999999
Q ss_pred ccccceeeeeeEEEeeCCceEEEEEeCccccccchhhhhhHHHHHhhhhCCcEEEECCCCC
Q 032455 79 VVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 139 (140)
Q Consensus 79 LV~PseIVGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLtgkdv~FeFp~~~ 139 (140)
||||+|||||||||++|||+++|||||++||||+|||+|||++|||+||||||+||||+.+
T Consensus 129 Lv~P~eIVGKRir~rlDGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgkdv~FeFp~~~ 189 (190)
T 3u5c_H 129 LVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIPSET 189 (190)
T ss_dssp HSCSSCEEEEEEEECSSSCEEEEEEECSSSTHHHHTTHHHHHHHHHHHHSCEEEEECCC--
T ss_pred cccchheeeeEEEEecCCCEEEEEEECHHHhcccchhhHHHHHHHHHhhCCcEEEEecCcc
Confidence 9999999999999999999999999999999999999999999999999999999999764
No 2
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3
Probab=100.00 E-value=2.6e-68 Score=428.20 Aligned_cols=138 Identities=35% Similarity=0.607 Sum_probs=132.3
Q ss_pred Ceec-CC---eeEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccCCCCCCC-cccccCCcchhHHHHHh
Q 032455 1 MDVS-GN---RKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS-AVQRPRSRTLTAVHDAM 75 (140)
Q Consensus 1 i~v~-~~---kkaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~k~-~q~rPRsRTLTaVhdai 75 (140)
|||| || +||||||||+|++++|||||.||++|||||| |+||+|||||||||+|+++. +|+||||||||||||||
T Consensus 48 iev~~~~~k~kkaivIfVP~~~lk~f~kiq~rLvrELEKKf-g~~Vv~ia~RrIl~kp~~~~~~q~rprsrTltaV~~ai 126 (197)
T 2xzm_3 48 FQINKTNKKAKSAVLIYVHFQSYRVLLSAARKLIIELEKKL-KQIVFFTAQRKIESKWVKEHKSQQRPRSRCLTYVYDAL 126 (197)
T ss_dssp EEEECTTCCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTT-SSEEEEEECCCCCCSSCCCCTTCCCCGGGSHHHHHHHH
T ss_pred EEecCCCCccceEEEEEEccchhhHHHHHHHHHHHHHHHHh-CCcEEEEecccccCCCcccCccccCCCccchhhhHHHH
Confidence 5786 66 7799999999999999999999999999999 89999999999999997754 89999999999999999
Q ss_pred hhcccccceeeeeeEEEeeCCceEEEEEeCccccccchhhhhhHHHHHhhhhCCcEEEECCCCC
Q 032455 76 LEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 139 (140)
Q Consensus 76 LeDLV~PseIVGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLtgkdv~FeFp~~~ 139 (140)
|||||||+|||||||||++|||+++||+||++||+++|||+|+|++||++|||+||+||||+.+
T Consensus 127 LeDLv~PaeIvGkRir~~~DGs~~~KV~Ld~~d~~~ve~Kletf~~VykkLTGkdV~feFp~~~ 190 (197)
T 2xzm_3 127 LDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTVTTREVTFEFKEDK 190 (197)
T ss_dssp HHHHSTTSCCSEEEEEECSSSCEECCEEEESTTHHHHHHHHHHHHHHHHHHSCCBCCEEEECCC
T ss_pred HHHhccchheeeeEEEEecCCCEEEEEEeCHHHhcccccchHHHHHHHHHHhCCCEEEEEcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999764
No 3
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=71.12 E-value=3.9 Score=30.70 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=67.0
Q ss_pred EEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccCCCCCCCcccccCCcchhHHHHHhhhcccccceeeee
Q 032455 9 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGK 88 (140)
Q Consensus 9 aivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~k~~q~rPRsRTLTaVhdaiLeDLV~PseIVGK 88 (140)
.+++.|+=-..-+.--.....++.+++.+ |..+=+|-. +. =-...+..+++|+++.+-
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~el-gekIdIV~~-------s~--------------d~~~fI~naLsPA~V~~V 94 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREAL-GKNIEVVEY-------SS--------------DLERIVKNLFPGVKIESI 94 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHH-SSEEEEEEC-------CS--------------SHHHHHHHHSTTSCEEEE
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHh-CCeeEEEEc-------CC--------------CHHHHHHHhcCCceEEEE
Confidence 44555644444444334556667777777 888766631 11 133457788999999999
Q ss_pred eEEEeeCCceEEEEEeCccccccchhhhhhHHHHHhhhhCCcEE
Q 032455 89 RVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVV 132 (140)
Q Consensus 89 Rir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLtgkdv~ 132 (140)
.+-.. ||++.+.|.+++.|....--|-..-...-.+|||....
T Consensus 95 ~i~~~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~id 137 (144)
T 2cxc_A 95 NVRER-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFG 137 (144)
T ss_dssp EEEEE-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred EEeec-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeC
Confidence 87666 89999999999887766555555555666777776543
No 4
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=50.31 E-value=39 Score=22.83 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=33.9
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
.++++.+-.....+|..+...++.+++...++.++++++...=+
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 46666677777888888877788899887778899999876433
No 5
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=49.09 E-value=42 Score=23.30 Aligned_cols=45 Identities=13% Similarity=0.291 Sum_probs=36.4
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccC
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 52 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 52 (140)
.++++.+-.....+|..+...+..+++....+.++++++...=++
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 467777777888999998888889999888888999999875454
No 6
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=48.39 E-value=39 Score=24.06 Aligned_cols=45 Identities=7% Similarity=0.256 Sum_probs=36.3
Q ss_pred eeEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 7 RKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 7 kkaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
-.++++.+-.....+|..+...+..++++..++..+++++...=+
T Consensus 102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 346777777788899999888888999988888999999886433
No 7
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=47.66 E-value=46 Score=22.45 Aligned_cols=44 Identities=7% Similarity=0.242 Sum_probs=33.6
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
.++++.+-.....+|..+...+..++.....+.++++++...=+
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 121 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHH
T ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccc
Confidence 46666677777788888877788888887778899999886433
No 8
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=47.44 E-value=44 Score=23.12 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=33.7
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
.++++.+-.....+|..+...++.++++...+.++++++...=+
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 91 DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 45666666777788888876778888887778899999986433
No 9
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=46.09 E-value=47 Score=23.11 Aligned_cols=44 Identities=9% Similarity=0.244 Sum_probs=34.8
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
.++++.+-.....+|..+...++.++.....+.++++++...=+
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDL 136 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGG
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhh
Confidence 46777777777889988877788888887778899999886544
No 10
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=40.34 E-value=63 Score=22.72 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=33.9
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
.++++.+-.....+|..+...++.+++...++.++++++...=+
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHh
Confidence 46666666777788888877788899887778899999886544
No 11
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=39.63 E-value=65 Score=22.75 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=33.0
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRI 50 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrI 50 (140)
.++++.+-.....+|..+...++.+++...++..+++++...=
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 140 (207)
T 2fv8_A 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 140 (207)
T ss_dssp CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 4666666677778888886777888888777889999988643
No 12
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=39.61 E-value=77 Score=22.63 Aligned_cols=45 Identities=7% Similarity=0.194 Sum_probs=34.6
Q ss_pred eeEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 7 RKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 7 kkaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
-.++++.+-.....+|..+...++.+++....+..+++++...=+
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 346666667777888998887788889887778899999886433
No 13
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=39.13 E-value=67 Score=22.58 Aligned_cols=44 Identities=9% Similarity=0.231 Sum_probs=33.6
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
.++++.+-.....+|..+...+..+++....+..+++++...=+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 141 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 141 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHh
Confidence 46666666777788888877788888887778899999886544
No 14
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=38.93 E-value=75 Score=21.82 Aligned_cols=46 Identities=9% Similarity=0.220 Sum_probs=34.1
Q ss_pred eeEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccC
Q 032455 7 RKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 52 (140)
Q Consensus 7 kkaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 52 (140)
-.++++.+-.....+|..+...+..++.....+.++++++...=++
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 79 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 3466777777777888887666778887766788999999875443
No 15
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=37.65 E-value=7.3 Score=23.07 Aligned_cols=8 Identities=88% Similarity=1.182 Sum_probs=6.7
Q ss_pred HHHHhhhc
Q 032455 30 VRELEKKF 37 (140)
Q Consensus 30 v~ELEKKf 37 (140)
+.||||||
T Consensus 3 veelekkf 10 (35)
T 1qp6_A 3 VEELEKKF 10 (35)
T ss_dssp SHHHHHHH
T ss_pred HHHHHHHH
Confidence 47899998
No 16
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=34.68 E-value=89 Score=22.42 Aligned_cols=44 Identities=7% Similarity=0.196 Sum_probs=33.5
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
.++++.+-.....+|..+...+..+++....+..+++++...=+
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhh
Confidence 46666677777888888866677888877778899999886544
No 17
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=32.15 E-value=91 Score=22.38 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=34.8
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccC
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 52 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 52 (140)
.++++.+-.....+|..+...++.++....++..+++++...=++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 467777777778889886667788888877888999999865443
No 18
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=28.63 E-value=43 Score=23.33 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=33.8
Q ss_pred eEEEeeCCc-eEEEEEeCccccccchhhhhhHHHHHhhhhC
Q 032455 89 RVRYRLDGS-KIIKIFLDPKERNNTEYKLESFSGVYRKLTG 128 (140)
Q Consensus 89 Rir~~~DGs-kl~KV~LD~~~~~~ve~Kl~tfs~VYkkLtg 128 (140)
++.+|.+|+ .++||+....+...++..++.+....+.+.+
T Consensus 58 wvlvRpSGTEP~irvy~Ea~~~~~~~~~~~~~~~~i~~~~~ 98 (112)
T 1wjw_A 58 RAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLVFQLAG 98 (112)
T ss_dssp EEEEECSSSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeCCCccEEEEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 788999998 7999999888888888888888888777644
No 19
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=26.56 E-value=1.3e+02 Score=22.52 Aligned_cols=44 Identities=7% Similarity=0.263 Sum_probs=34.2
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
.++++.+-.....+|..+...++.+++....+.++++++...=+
T Consensus 228 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 228 DVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDL 271 (332)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhc
Confidence 46677777777888888877788888887778899999886544
No 20
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=20.73 E-value=1.8e+02 Score=18.92 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=24.7
Q ss_pred EEEEEeehhhHHHHHHHHHHH--HHHHhhhcCCCeEEEEeeeccc
Q 032455 9 AIVVYVPYRLRKAYRKIHSRL--VRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 9 aivIfVP~~~lk~f~kiq~rL--v~ELEKKfsg~~Vv~iaqRrIl 51 (140)
++++.+-.....+|..++.++ +.++....++.++++++...=+
T Consensus 77 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl 121 (172)
T 2erx_A 77 AFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121 (172)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccc
Confidence 556656666666776655443 3343334467899999886433
No 21
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=20.55 E-value=2e+02 Score=20.26 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=31.8
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
.++++.+-.....+|..+.. ++.++.+...+.++++++...=+
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl 131 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDI 131 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTCCEEEEEECTTS
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECCcc
Confidence 46677777777888888764 66777777778899999886444
No 22
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=20.51 E-value=2.1e+02 Score=19.47 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=29.7
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhc----CCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKF----SGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKf----sg~~Vv~iaqRrIl 51 (140)
.++++.+-.....+|..+. .++.++.... .+.++++++...=+
T Consensus 98 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl 144 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDL 144 (208)
T ss_dssp CEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC--
T ss_pred cEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECccc
Confidence 4667777777778888877 5567776654 37889999886433
Done!