Query 032455
Match_columns 140
No_of_seqs 112 out of 224
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 23:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032455.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032455hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m7ba_ c.37.1.8 (A:) RhoE (RN 49.0 19 0.0014 23.9 5.7 44 8-51 75-118 (179)
2 d1mh1a_ c.37.1.8 (A:) Rac {Hum 48.5 19 0.0013 23.8 5.5 45 8-52 78-122 (183)
3 d1e19a_ c.73.1.1 (A:) Carbamat 40.6 8.3 0.0006 28.7 2.8 44 87-134 1-49 (313)
4 d1z2aa1 c.37.1.8 (A:8-171) Rab 39.3 29 0.0021 22.3 5.2 42 8-50 76-117 (164)
5 d2bcgg2 c.3.1.3 (G:400-446) Gu 38.7 4.7 0.00034 24.1 0.9 24 111-134 21-44 (47)
6 d2atxa1 c.37.1.8 (A:9-193) Rho 36.5 37 0.0027 22.4 5.6 45 9-53 83-127 (185)
7 d1t0hb_ c.37.1.1 (B:) Guanylat 33.4 14 0.001 28.1 3.0 59 17-75 28-97 (219)
8 d1kmqa_ c.37.1.8 (A:) RhoA {Hu 32.9 46 0.0034 21.5 5.5 45 8-52 75-119 (177)
9 d2bmea1 c.37.1.8 (A:6-179) Rab 31.5 51 0.0037 21.1 5.5 44 8-51 79-122 (174)
10 d1wjwa_ d.129.2.1 (A:) Phospho 28.6 19 0.0014 24.1 2.8 41 89-129 58-99 (112)
11 d2ngra_ c.37.1.8 (A:) CDC42 {H 27.7 62 0.0045 21.2 5.5 45 8-52 76-120 (191)
12 d2f9la1 c.37.1.8 (A:8-182) Rab 25.2 76 0.0055 20.3 5.5 44 7-51 77-121 (175)
13 d1z0fa1 c.37.1.8 (A:8-173) Rab 23.5 85 0.0062 19.8 5.5 44 8-51 78-121 (166)
14 d1e0sa_ c.37.1.8 (A:) ADP-ribo 22.3 92 0.0067 19.8 5.9 47 6-52 79-126 (173)
15 d2cx4a1 c.47.1.10 (A:4-163) Ba 21.6 49 0.0035 21.1 3.9 42 5-47 29-70 (160)
No 1
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=48.95 E-value=19 Score=23.95 Aligned_cols=44 Identities=7% Similarity=0.196 Sum_probs=37.5
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
-++++..-.....+|+.+..++...++..-++-++++|+...=+
T Consensus 75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (179)
T d1m7ba_ 75 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 118 (179)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred hhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccc
Confidence 57777778889999999999998999888889999999987644
No 2
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.52 E-value=19 Score=23.81 Aligned_cols=45 Identities=9% Similarity=0.271 Sum_probs=36.6
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccC
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 52 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 52 (140)
-++++.+=.....+|+.+..++..+++..-++.++++|+...=++
T Consensus 78 ~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~ 122 (183)
T d1mh1a_ 78 DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (183)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred ceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccch
Confidence 366767777888999999988899998887788999999876544
No 3
>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=40.61 E-value=8.3 Score=28.67 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=26.2
Q ss_pred eeeEEEeeCCceEEEEEeCccccccchhhhhhHHHHHh---hh--hCCcEEEE
Q 032455 87 GKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYR---KL--TGKDVVFD 134 (140)
Q Consensus 87 GKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYk---kL--tgkdv~Fe 134 (140)
||||.++++|| +..|+..+...++-++.+..+-. .| .|.++++-
T Consensus 1 ~KrIVIKiGgs----~l~~~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vVlV 49 (313)
T d1e19a_ 1 GKRVVIALGGN----ALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVIT 49 (313)
T ss_dssp CCEEEEECCGG----GTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEeChH----hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 89999999998 33455555556543333333332 22 56776653
No 4
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.33 E-value=29 Score=22.28 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=32.5
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRI 50 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrI 50 (140)
.++++.+-+....+|..++ .++.++.+..++.++++|+...=
T Consensus 76 ~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~iilVgnK~D 117 (164)
T d1z2aa1 76 QACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKID 117 (164)
T ss_dssp CEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGG
T ss_pred ceEEEEEeccchhhhhhcc-cccccccccCCCceEEEeeccCC
Confidence 4566677778889999876 56688888778999999987543
No 5
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.66 E-value=4.7 Score=24.11 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.0
Q ss_pred cchhhhhhHHHHHhhhhCCcEEEE
Q 032455 111 NTEYKLESFSGVYRKLTGKDVVFD 134 (140)
Q Consensus 111 ~ve~Kl~tfs~VYkkLtgkdv~Fe 134 (140)
..|.-.+-...+|+++||++..|+
T Consensus 21 HFEtt~~Dv~diY~ritG~~ldl~ 44 (47)
T d2bcgg2 21 HFESMTDDVKDIYFRVTGHPLVLK 44 (47)
T ss_dssp BSHHHHHHHHHHHHHHHSSCCCCC
T ss_pred hhHHHHHHHHHHHHHhhCCcccee
Confidence 367777788899999999998775
No 6
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.47 E-value=37 Score=22.39 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=35.4
Q ss_pred EEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccCC
Q 032455 9 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRP 53 (140)
Q Consensus 9 aivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~k 53 (140)
|+++.+=+....+|..+..+...+++...++..+++|+...=|+.
T Consensus 83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 127 (185)
T d2atxa1 83 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 127 (185)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred eeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeecccccc
Confidence 555555567789999998889999988888888999998765543
No 7
>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=33.36 E-value=14 Score=28.11 Aligned_cols=59 Identities=24% Similarity=0.478 Sum_probs=31.5
Q ss_pred hhHHHHH---HHHHHHHHHHhhhcCCCeEEE-------EeeecccCCCCCCCcccccCCc-chhHHHHHh
Q 032455 17 RLRKAYR---KIHSRLVRELEKKFSGKDVVL-------IATRRIVRPPKKGSAVQRPRSR-TLTAVHDAM 75 (140)
Q Consensus 17 ~~lk~f~---kiq~rLv~ELEKKfsg~~Vv~-------iaqRrIl~kp~~k~~q~rPRsR-TLTaVhdai 75 (140)
|.||.|. =.|..|...|-+.|.|+-.+- .|+|..+..|.+...--|-.+| .+..|+..|
T Consensus 28 PsLkGyevTDMMqkALfD~Lk~rF~grI~itrv~aDIslakrs~~~n~~k~~~~~rs~~r~~~~eVq~eI 97 (219)
T d1t0hb_ 28 PSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEI 97 (219)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGCC----------CCCCCCSSSSCHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHhcCCceEEEEEecchhHhhhccccCchhhhhhhcccccchHHHHHHHH
Confidence 6777774 468899999999998854443 3899888888665533344443 355565543
No 8
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.93 E-value=46 Score=21.46 Aligned_cols=45 Identities=11% Similarity=0.260 Sum_probs=35.4
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccC
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 52 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 52 (140)
.++++.+=.....+|..+..+....+++..++-++++++...=++
T Consensus 75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 119 (177)
T d1kmqa_ 75 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 119 (177)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGT
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeeccccc
Confidence 466666667788999998888888888877788999999875544
No 9
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.52 E-value=51 Score=21.11 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=33.9
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
.|+++.+-.....+|..++..+....+...++.++++++.-.=+
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 122 (174)
T d2bmea1 79 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122 (174)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred CEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccc
Confidence 46777777778899999888888877766678899988886543
No 10
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.64 E-value=19 Score=24.07 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=36.1
Q ss_pred eEEEeeCCc-eEEEEEeCccccccchhhhhhHHHHHhhhhCC
Q 032455 89 RVRYRLDGS-KIIKIFLDPKERNNTEYKLESFSGVYRKLTGK 129 (140)
Q Consensus 89 Rir~~~DGs-kl~KV~LD~~~~~~ve~Kl~tfs~VYkkLtgk 129 (140)
|+-+|.+|+ .+++|+....+++.++.=.+.+..+.+++.|-
T Consensus 58 rvlIRpSGTEp~iRi~vEa~~~~~~~~i~~~i~~lv~~~~~g 99 (112)
T d1wjwa_ 58 RAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLVFQLAGG 99 (112)
T ss_dssp EEEEECSSSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEeCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHhCC
Confidence 899999998 79999999988888888888888888888764
No 11
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.67 E-value=62 Score=21.20 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=34.8
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccC
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 52 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 52 (140)
-++++..-+....+|+.+..++...++..-.+-++++++...=|+
T Consensus 76 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~ 120 (191)
T d2ngra_ 76 DVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120 (191)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGG
T ss_pred ceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 466666677888999999888888887776788888998875443
No 12
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.19 E-value=76 Score=20.34 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=31.5
Q ss_pred eeEEEEEeehhhHHHHHHHHHHHHHHHhhhc-CCCeEEEEeeeccc
Q 032455 7 RKAIVVYVPYRLRKAYRKIHSRLVRELEKKF-SGKDVVLIATRRIV 51 (140)
Q Consensus 7 kkaivIfVP~~~lk~f~kiq~rLv~ELEKKf-sg~~Vv~iaqRrIl 51 (140)
-.|+|+.+-.....+|..++..+ .++.+.. ++-+++++|...=+
T Consensus 77 ~~~~i~v~d~~~~~S~~~~~~~~-~~i~~~~~~~~piilvgnK~Dl 121 (175)
T d2f9la1 77 AVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIMLVGNKSDL 121 (175)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHH-HHHHHHSCTTCEEEEEEECTTC
T ss_pred cCeEEEEEECCCcccchhHHHHH-HHHHHhcCCCCcEEEEEeeecc
Confidence 34777777888899999988654 6665554 45688889886433
No 13
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.47 E-value=85 Score=19.83 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=30.1
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeeccc
Q 032455 8 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 51 (140)
Q Consensus 8 kaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 51 (140)
-++++.+-+....+|+.++.++-.....+..+..+++++...=+
T Consensus 78 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl 121 (166)
T d1z0fa1 78 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 121 (166)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred cEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccc
Confidence 36777777788899998887765544445556677777765433
No 14
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}
Probab=22.28 E-value=92 Score=19.79 Aligned_cols=47 Identities=11% Similarity=0.211 Sum_probs=36.5
Q ss_pred CeeEEEEEeehhhHHHHHHHHHHHHHHHhh-hcCCCeEEEEeeecccC
Q 032455 6 NRKAIVVYVPYRLRKAYRKIHSRLVRELEK-KFSGKDVVLIATRRIVR 52 (140)
Q Consensus 6 ~kkaivIfVP~~~lk~f~kiq~rLv~ELEK-Kfsg~~Vv~iaqRrIl~ 52 (140)
+..++++.+......+|..++.+|...++. ..++..+++++...=++
T Consensus 79 ~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~ 126 (173)
T d1e0sa_ 79 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126 (173)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred ccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccc
Confidence 345788888888888999999999888875 45788999998854443
No 15
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=21.63 E-value=49 Score=21.10 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=26.0
Q ss_pred CCeeEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEee
Q 032455 5 GNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIAT 47 (140)
Q Consensus 5 ~~kkaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaq 47 (140)
.||..+|.|.|-..-..+.+ |..-+.++-..|.+..+.+++-
T Consensus 29 ~gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~~vv~i 70 (160)
T d2cx4a1 29 RGRPAVLIFFPAAFSPVCTK-ELCTFRDKMAQLEKANAEVLAI 70 (160)
T ss_dssp TSSCEEEEECSCTTCHHHHH-HHHHHHHTCTTTSTTCCEEEEE
T ss_pred CCCEEEEEecccccCCchhh-hhhhhhcccccccccccccccc
Confidence 36778889987654455544 5555666666776655544443
Done!