Query 032457
Match_columns 140
No_of_seqs 122 out of 1045
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 14:20:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01061 RNase_T2_euk Ribonucle 100.0 2.3E-29 5E-34 193.2 11.2 105 2-116 85-195 (195)
2 cd00374 RNase_T2 Ribonuclease 100.0 7.8E-29 1.7E-33 189.1 11.6 105 2-116 85-195 (195)
3 PF00445 Ribonuclease_T2: Ribo 99.9 2.7E-28 5.8E-33 186.0 7.7 94 2-95 88-189 (189)
4 KOG1642 Ribonuclease, T2 famil 99.9 3.6E-27 7.9E-32 186.2 10.4 117 2-124 121-245 (263)
5 cd01062 RNase_T2_prok Ribonucl 99.9 2.5E-25 5.5E-30 169.4 9.8 96 2-113 81-180 (184)
6 COG3719 Rna Ribonuclease I [Tr 99.8 5.8E-21 1.3E-25 150.6 8.5 105 2-118 138-247 (249)
7 PRK10095 ribonuclease I; Provi 99.8 3.1E-20 6.8E-25 149.5 9.0 106 2-118 151-265 (268)
8 PF01328 Peroxidase_2: Peroxid 77.2 1.9 4.1E-05 35.9 2.3 36 34-69 52-87 (317)
9 PF10281 Ish1: Putative stress 66.3 12 0.00026 21.1 3.3 30 33-63 8-37 (38)
10 PF08368 FAST_2: FAST kinase-l 54.1 34 0.00075 22.9 4.6 40 52-91 49-92 (93)
11 TIGR03595 Obg_CgtA_exten Obg f 47.8 32 0.00068 22.1 3.4 27 18-47 32-58 (69)
12 PF09269 DUF1967: Domain of un 44.8 30 0.00066 22.1 3.0 27 18-47 32-58 (69)
13 PF10678 DUF2492: Protein of u 41.3 50 0.0011 22.0 3.6 38 32-75 7-45 (78)
14 TIGR03853 matur_matur probable 38.5 65 0.0014 21.5 3.8 37 33-75 6-43 (77)
15 PF08043 Xin: Xin repeat; Int 37.6 14 0.00031 17.4 0.4 11 130-140 5-15 (16)
16 PF13041 PPR_2: PPR repeat fam 31.3 39 0.00085 19.3 1.8 36 22-60 13-48 (50)
17 PF08100 Dimerisation: Dimeris 29.8 52 0.0011 19.9 2.1 32 25-61 2-33 (51)
18 PF05182 Fip1: Fip1 motif; In 29.4 23 0.00049 21.2 0.4 15 3-24 12-26 (45)
19 PF10495 PACT_coil_coil: Peric 29.3 1.7E+02 0.0037 19.2 5.1 45 18-62 15-63 (78)
20 cd07884 RHD-n_Relish N-termina 26.3 33 0.00071 26.0 0.9 35 38-86 100-134 (159)
21 PF09377 SBDS_C: SBDS protein 23.7 59 0.0013 23.2 1.8 31 33-63 5-35 (125)
22 PF12307 DUF3631: Protein of u 22.0 1.1E+02 0.0024 23.6 3.1 29 34-62 148-183 (184)
23 PF08766 DEK_C: DEK C terminal 21.0 1E+02 0.0022 18.5 2.3 29 34-67 9-37 (54)
24 TIGR00291 RNA_SBDS rRNA metabo 20.5 1.2E+02 0.0026 24.3 3.1 32 32-63 101-132 (231)
No 1
>cd01061 RNase_T2_euk Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members.
Probab=99.96 E-value=2.3e-29 Score=193.18 Aligned_cols=105 Identities=38% Similarity=0.658 Sum_probs=94.9
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHhcCchHHHHhCCCCCCCCCCCChHHHHHHHHHHhCCccEEEecc----CCc
Q 032457 2 VLAEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSK----DAV 77 (140)
Q Consensus 2 ~eW~KHGTCs~~~~~~~~~YF~~al~L~~k~ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~~g~~p~l~C~~----~~L 77 (140)
.||+|||||+..+..++.+||.+|++|++++|+..+|+++||+|+ ++.|++++|++||++++|..|.|+|.+ +.|
T Consensus 85 hEW~KHGTC~~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~~I~P~-~~~~~~~~i~~ai~~~~g~~~~l~C~~~~~~~~L 163 (195)
T cd01061 85 HEWNKHGTCSSTLLYNQYDYFDTALKLKDKLDLLKILAKAGIVPS-TQTYTLSDIQNAIKAATGVTPVIKCSKDPGKGEL 163 (195)
T ss_pred HHHhhCcEeCCCcccCHHHHHHHHHHHHHHCCHHHHHHHCCcCCC-CcEEcHHHHHHHHHHHHCCCcEEEeCcCCCCcEE
Confidence 499999999985335899999999999999999999999999998 789999999999999999999999987 589
Q ss_pred ceEEEEEeCC-CceeeCCCCCCCCCCCCCCCCCCC-CceEe
Q 032457 78 NELHLCFYKD-FKPRDCIIERSPENDNYFSSSSCP-KYVSL 116 (140)
Q Consensus 78 ~EV~iC~d~~-~~~~~Cp~~~~~~~~~~~~~~~C~-~~i~~ 116 (140)
.||+||||++ +++++||.. ...+|| ++|+|
T Consensus 164 ~Ev~iC~~k~~~~~~~C~~~---------~~~~C~~~~i~f 195 (195)
T cd01061 164 NEIWICFDKKGGEFIDCPRP---------PKSTCPDDGIKF 195 (195)
T ss_pred EEEEEEEECCCCeEeeCCCC---------CCCCCCCCceEC
Confidence 9999999999 799999864 357899 55664
No 2
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen.
Probab=99.96 E-value=7.8e-29 Score=189.14 Aligned_cols=105 Identities=39% Similarity=0.623 Sum_probs=95.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHhcCchHHHHhCCCCCCCCCCCChHHHHHHHHHHhCCccEEEecc----CCc
Q 032457 2 VLAEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSK----DAV 77 (140)
Q Consensus 2 ~eW~KHGTCs~~~~~~~~~YF~~al~L~~k~ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~~g~~p~l~C~~----~~L 77 (140)
.||+|||||+... .++.+||++|++|++++|++++|+..||+|++++.|+.++|++||++++|..|.|.|.+ +.|
T Consensus 85 hEW~KHGTC~~~~-~~~~~YF~~a~~l~~~~ni~~~L~~~~i~p~~~~~~~~~~i~~ai~~~~g~~~~l~C~~~~~~~~L 163 (195)
T cd00374 85 HEWNKHGTCSGTL-LDQDDYFRTALKLLDKLDLLSILAKAGIKPSDGSTYTLAFIQNAIKAATGATPSLKCTKDPGKGLL 163 (195)
T ss_pred HHHhcCceecCCc-CCHHHHHHHHHHHHHhCCHHHHHHHCCCcCCCCceecHHHHHHHHHHHHCCCcEEEeccCCCCcEE
Confidence 4999999999853 48999999999999999999999999999998899999999999999999999999987 689
Q ss_pred ceEEEEEeCC-CceeeCCCCCCCCCCCCCCCCCCC-CceEe
Q 032457 78 NELHLCFYKD-FKPRDCIIERSPENDNYFSSSSCP-KYVSL 116 (140)
Q Consensus 78 ~EV~iC~d~~-~~~~~Cp~~~~~~~~~~~~~~~C~-~~i~~ 116 (140)
.||+||+|++ +++++||.. ..++|| ++|.|
T Consensus 164 ~Ev~iC~~~~~~~~~~C~~~---------~~~~C~~~~i~~ 195 (195)
T cd00374 164 TEIWICFDKDALKFIDCPTP---------GKSTCPADGIKF 195 (195)
T ss_pred EEEEEEEECCCCeEEeCCCC---------CCCCCCCCcEEC
Confidence 9999999999 899999864 357899 55654
No 3
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3.1.27.1 from EC). Two histidines residues have been shown [, ] to be involved in the catalytic mechanism of RNase T2 and Rh. These residues and the region around them are highly conserved in a number of other RNAses that have been found to be evolutionary related to these fungal enzymes.; GO: 0003723 RNA binding, 0033897 ribonuclease T2 activity; PDB: 1IOO_A 3D3Z_A 1UCG_B 1UCC_A 1J1F_A 1V9H_A 1UCD_A 1J1G_A 1UCA_A 1BK7_A ....
Probab=99.95 E-value=2.7e-28 Score=186.04 Aligned_cols=94 Identities=44% Similarity=0.748 Sum_probs=84.9
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHhcCchHHHHhCCCCCCCCCCCChHHHHHHHHHHh-CCccEEEeccC-----
Q 032457 2 VLAEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAF-HATPKLDCSKD----- 75 (140)
Q Consensus 2 ~eW~KHGTCs~~~~~~~~~YF~~al~L~~k~ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~~-g~~p~l~C~~~----- 75 (140)
.||.|||||+.....++.+||++|++|++++|+.++|+++||+|+.++.|++++|++||++++ |..|.|+|.++
T Consensus 88 hEW~KHGtC~~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~gI~p~~~~~~~~~~i~~al~~~~~~~~~~l~C~~~~~~~~ 167 (189)
T PF00445_consen 88 HEWEKHGTCSGMDFIDQYDYFSTALKLYKKLNLPKILANAGIVPSNGKTYSLSDIRDALKQAFNGVRPQLRCSRNQVNGE 167 (189)
T ss_dssp HHHHHTGGGGTTTSSSHHHHHHHHHHHHHHCHHHHHHHHTTHCSCSSEEEEHHHHHHHHHHHHTSSGEEEEEECTETTSE
T ss_pred hcceeeeEEcCCchhhHHHHHHHHHHHHHhccchHHHhhcccCCCccccccHHHHHHHHHHHcCCCceEEEEecCCCCCc
Confidence 499999999995323499999999999999999999999999999989999999999999999 99999999886
Q ss_pred -CcceEEEEEeCCC-ceeeCCC
Q 032457 76 -AVNELHLCFYKDF-KPRDCII 95 (140)
Q Consensus 76 -~L~EV~iC~d~~~-~~~~Cp~ 95 (140)
+|.||++|||+++ ++||||.
T Consensus 168 ~~L~ei~iC~~~~~~~~idCp~ 189 (189)
T PF00445_consen 168 QYLTEIRICFDKDLFQFIDCPC 189 (189)
T ss_dssp EEEEEEEEEEETTSSSEE--S-
T ss_pred EEEEEEEEEEeCCCCeEeCCcC
Confidence 8999999999997 7999983
No 4
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=99.94 E-value=3.6e-27 Score=186.24 Aligned_cols=117 Identities=38% Similarity=0.708 Sum_probs=101.8
Q ss_pred cccccccccCCCCCC--CHHHHHHHHHHHHHhcCchHHHHhCCCCCCCCCCCChHHHHHHHHHHhCCccEEEeccC----
Q 032457 2 VLAEKHGTCSFPVVR--DEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKD---- 75 (140)
Q Consensus 2 ~eW~KHGTCs~~~~~--~~~~YF~~al~L~~k~ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~~g~~p~l~C~~~---- 75 (140)
-||+|||||+.+++. +|++||.++++|++++|+..+|.++||.|+ ...|++++|++||++++|+.|.+.|.++
T Consensus 121 HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~-~~~y~l~~I~nAi~~~~G~~p~I~C~rd~~~n 199 (263)
T KOG1642|consen 121 HEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPD-DNFYSLADIKNAIKEAIGKTPGIECLRDSKHN 199 (263)
T ss_pred hhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCC-CCceeHHHHHHHHHHHhCCCCceEeccCcccC
Confidence 499999999998753 899999999999999999999999999997 5799999999999999999999999874
Q ss_pred --CcceEEEEEeCCCceeeCCCCCCCCCCCCCCCCCCCCceEeccCccCCC
Q 032457 76 --AVNELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKYVSLPVYMSSGV 124 (140)
Q Consensus 76 --~L~EV~iC~d~~~~~~~Cp~~~~~~~~~~~~~~~C~~~i~~p~~~~~~~ 124 (140)
+|.||++|+.+++++++|..... ....++|+..+.||.|.+..+
T Consensus 200 v~~l~qI~lCl~kd~~~~d~~~~~~-----~~P~g~~~~~~~~ps~~~r~~ 245 (263)
T KOG1642|consen 200 VSQLGQIRLCLLKDFSPRDCIECPT-----EFPRGSCPTFIQFPSFGPRPS 245 (263)
T ss_pred ceEeeeEEEEeecCcccccccCCCC-----cccCCcccccccCCCCCCCCc
Confidence 49999999999998888865310 234678999999998876555
No 5
>cd01062 RNase_T2_prok Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the prokaryotic RNase T2 family members.
Probab=99.92 E-value=2.5e-25 Score=169.42 Aligned_cols=96 Identities=26% Similarity=0.349 Sum_probs=85.2
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHhcCchHHHHhCCCCCCCCCCCChHHHHHHHHHHhCCcc----EEEeccCCc
Q 032457 2 VLAEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATP----KLDCSKDAV 77 (140)
Q Consensus 2 ~eW~KHGTCs~~~~~~~~~YF~~al~L~~k~ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~~g~~p----~l~C~~~~L 77 (140)
.||+|||||++ .++.+||++|++|++++|++++|+..++.+ + |+.++|++||++++|..+ .|+|.++.|
T Consensus 81 hEW~KHGtC~~---~~~~~YF~~a~~l~~~~~~~~~l~~~~~~~--~--~~~~~i~~a~~~~~~~~~~~~~~~~C~~~~L 153 (184)
T cd01062 81 HEWRKHGTCSG---LDPDAYFAKARNLREALKIPPELRLLAGNI--G--VTASEIRQAFIKANPGLPPDAVSVSCQGGLL 153 (184)
T ss_pred HHHhcCCcCCC---CCHHHHHHHHHHHHHHcCcchhhhhccccC--C--cCHHHHHHHHHHHCCCCCCceEEEEECCCeE
Confidence 49999999998 699999999999999999999999876532 2 999999999999998766 899999999
Q ss_pred ceEEEEEeCCCceeeCCCCCCCCCCCCCCCCCCCCc
Q 032457 78 NELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKY 113 (140)
Q Consensus 78 ~EV~iC~d~~~~~~~Cp~~~~~~~~~~~~~~~C~~~ 113 (140)
.||+||||+++++++||.. ..++|+..
T Consensus 154 ~Ei~iC~~~~~~~~~C~~~---------~~~~C~~~ 180 (184)
T cd01062 154 TEVRICLDKDLKFAACPTA---------DRDNCPAG 180 (184)
T ss_pred EEEEEEeCcccCcccCCcc---------ccCCCCCC
Confidence 9999999999999999864 25679864
No 6
>COG3719 Rna Ribonuclease I [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=5.8e-21 Score=150.60 Aligned_cols=105 Identities=25% Similarity=0.392 Sum_probs=86.7
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHhcCchHHHHhCCCCCCCCCCCChHHHHHHHHHHhCC----ccEEEeccCCc
Q 032457 2 VLAEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHA----TPKLDCSKDAV 77 (140)
Q Consensus 2 ~eW~KHGTCs~~~~~~~~~YF~~al~L~~k~ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~~g~----~p~l~C~~~~L 77 (140)
-||+|||||++ .+|.+||.++++|++++|++..+...- ++++++.++|.+||.+++|. .+.+.|++++|
T Consensus 138 heW~KHGtC~g---~s~~~YFa~~r~l~~~l~~p~~~~~~a----~~~~ls~~ei~~AF~~~n~~~~~~~v~vsc~~~~L 210 (249)
T COG3719 138 HEWRKHGTCSG---LSQEAYFATTRRLFEELKLPPVRKLLA----DGKTLSRDEIEQAFDKANGGLKGDAVRVSCQGNYL 210 (249)
T ss_pred hhHHhcCccCC---CCHHHHHHHHHHHHHHhcCCccccccc----cccccCHHHHHHHHHHhCCCCCchheEEEeeccce
Confidence 38999999999 799999999999999999998765542 26799999999999999963 47899999999
Q ss_pred ceEEEEEeCCCceeeCCCCCCCCCCCCCCCCCCCCc-eEecc
Q 032457 78 NELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKY-VSLPV 118 (140)
Q Consensus 78 ~EV~iC~d~~~~~~~Cp~~~~~~~~~~~~~~~C~~~-i~~p~ 118 (140)
.||+||+|++++..+|-.. + |......|+.+ +..|+
T Consensus 211 tEl~Icl~~~~~~~ac~~~-~----~~~~~~~C~~~~v~~~~ 247 (249)
T COG3719 211 TELRICLDKDLQNAACLAD-L----PQPDPGNCRKTFVIAPG 247 (249)
T ss_pred eeEEEEEccccccchhhcc-C----CCCCcccccccccccCC
Confidence 9999999999999999321 1 01245789988 44454
No 7
>PRK10095 ribonuclease I; Provisional
Probab=99.82 E-value=3.1e-20 Score=149.49 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=79.9
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHhcCchH---HHHhCCCCCCCCCCCChHHHHHHHHHHhCC----ccEEEecc
Q 032457 2 VLAEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTR---VLNEAGYLPSNTEKYPLGGIVSAIQNAFHA----TPKLDCSK 74 (140)
Q Consensus 2 ~eW~KHGTCs~~~~~~~~~YF~~al~L~~k~ni~~---~L~~~gI~Ps~~~~~~~~~I~~ai~~~~g~----~p~l~C~~ 74 (140)
.||+|||||+. .++.+||.++++|++++|++. +|... .++.|+.++|++||++++|. .+.|+|++
T Consensus 151 heW~KHGtC~~---~~~~~YF~~al~L~~kvn~s~~~~~L~~~-----~Gk~~s~~~I~~Ai~~a~G~~~~~~~~L~C~~ 222 (268)
T PRK10095 151 YEYAKHGACFG---FDPDAYFGTMVRLNQEIKESEAGKFLADN-----YGKTVSRRDFDAAFAKSWGKENVKAVKLTCQG 222 (268)
T ss_pred HHHHhCCeecC---CCHHHHHHHHHHHHHHhchhhhhhhhhcC-----CCcEEcHHHHHHHHHHHhCCCCCCcceEEeCC
Confidence 48999999987 699999999999999999755 45543 37899999999999999984 45999998
Q ss_pred C--CcceEEEEEeCCCceeeCCCCCCCCCCCCCCCCCCCCceEecc
Q 032457 75 D--AVNELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKYVSLPV 118 (140)
Q Consensus 75 ~--~L~EV~iC~d~~~~~~~Cp~~~~~~~~~~~~~~~C~~~i~~p~ 118 (140)
+ .|.||+||++++.. -.=+....+ .+....++|+..|++++
T Consensus 223 ~~~~L~EV~ICl~~~~~-~~~l~~~~~--~~~~~~~~C~~~~~i~~ 265 (268)
T PRK10095 223 NPAYLTEIQISLKADAI-NAPLSANSF--LPQPHPGNCGKQFVIDK 265 (268)
T ss_pred CCcEEEEEEEEcccccc-cCCchhhhc--cCCCCCCCCCCCeeeCC
Confidence 7 79999999998842 000111011 11113568999987754
No 8
>PF01328 Peroxidase_2: Peroxidase, family 2; InterPro: IPR000028 Chloroperoxidase (CPO), also known as Heme haloperoxidase, is a ~250 residue heme-containing glycoprotein that is secreted by various fungi. Chloroperoxidase was first identified in Caldariomyces fumago where it catalyzes the hydrogen peroxide-dependent chlorination of cyclopentanedione during the biosynthesis of the antibiotic caldarioymcin. Additionally, heme haloperoxidase catalyzes the iodination and bromination of a wide range of substrates. Besides performing H2O2-dependent halogenation reactions, the enzyme catalyzes dehydrogenation reactions. Chloroperoxidase also functions as a catalase, facilitating the decomposition of hydrogen peroxide to oxygen and water. Furthermore, chloroperoxidase catalyzes P450-like oxygen insertion reactions. The capability of chloroperoxidase to perform these diverse reactions makes it one of the most versatile of all known heme proteins [, ]. Despite functional similarities with other heme enzymes, chloroperoxidase folds into a novel tertiary structure dominated by eight helical segments []. Structurally, chloroperoxidase is unique, but it shares features with both peroxidases and P450 enzymes. As in cytochrome P450 enzymes, the proximal heme ligand is a cysteine, but similar to peroxidases, the distal side of the heme is polar. However, unlike other peroxidases, the normally conserved distal arginine is lacking and the catalytic acid base is a glutamic acid and not a histidine [].; GO: 0004601 peroxidase activity; PDB: 2J5M_A 2J19_A 2CIW_A 2CJ0_A 2CIV_A 2CPO_A 1CPO_A 2CJ2_A 2J18_A 2CIZ_A ....
Probab=77.23 E-value=1.9 Score=35.94 Aligned_cols=36 Identities=25% Similarity=0.551 Sum_probs=27.5
Q ss_pred chHHHHhCCCCCCCCCCCChHHHHHHHHHHhCCccE
Q 032457 34 VTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPK 69 (140)
Q Consensus 34 i~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~~g~~p~ 69 (140)
-+.+|+++|+.|.+++.++..++.+++.+.++..+.
T Consensus 52 gLNtLANHGyLPrnG~~It~~~l~~al~~~~n~~~~ 87 (317)
T PF01328_consen 52 GLNTLANHGYLPRNGRNITVEQLINALQEGYNLSPD 87 (317)
T ss_dssp HHHHHHHTTSS-TT-EEE-HHHHHHHHHHHH-B-HH
T ss_pred cHHHHHhcCccCCCCccccHHHHHHHHHHHhCCChH
Confidence 456799999999999999999999999999987654
No 9
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=66.30 E-value=12 Score=21.07 Aligned_cols=30 Identities=7% Similarity=0.111 Sum_probs=22.4
Q ss_pred CchHHHHhCCCCCCCCCCCChHHHHHHHHHH
Q 032457 33 NVTRVLNEAGYLPSNTEKYPLGGIVSAIQNA 63 (140)
Q Consensus 33 ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~ 63 (140)
++.+.|.+.||..+... .+.+++.+.+++.
T Consensus 8 ~L~~wL~~~gi~~~~~~-~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 8 DLKSWLKSHGIPVPKSA-KTRDELLKLAKKN 37 (38)
T ss_pred HHHHHHHHcCCCCCCCC-CCHHHHHHHHHHh
Confidence 45677999999776433 6899998887753
No 10
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=54.13 E-value=34 Score=22.88 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHhCCccEEEec----cCCcceEEEEEeCCCcee
Q 032457 52 PLGGIVSAIQNAFHATPKLDCS----KDAVNELHLCFYKDFKPR 91 (140)
Q Consensus 52 ~~~~I~~ai~~~~g~~p~l~C~----~~~L~EV~iC~d~~~~~~ 91 (140)
-..++.++|++.+|..-.+++. .++..++.+++|.+.+++
T Consensus 49 ~~~~v~~~L~~lLg~~~~~~~~v~tp~gy~iD~E~~lD~~~~pl 92 (93)
T PF08368_consen 49 LQQEVQEALKSLLGGENYFRSNVITPYGYTIDFEIVLDKNGKPL 92 (93)
T ss_pred HHHHHHHHHHHHhCCccceEEccccCCCceEEEEEEECCCCCcC
Confidence 5788999999999977777764 267889999999987753
No 11
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=47.82 E-value=32 Score=22.06 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhcCchHHHHhCCCCCCC
Q 032457 18 EYSYFSTTLNLYFKYNVTRVLNEAGYLPSN 47 (140)
Q Consensus 18 ~~~YF~~al~L~~k~ni~~~L~~~gI~Ps~ 47 (140)
...|| .+.+++.++.++|.+.|+.+++
T Consensus 32 ~~~~f---~~~L~~~Gv~~~L~~~G~~~GD 58 (69)
T TIGR03595 32 NLRRF---ARKLKKLGVEDALRKAGAKDGD 58 (69)
T ss_pred HHHHH---HHHHHHCCHHHHHHHcCCCCCC
Confidence 44566 4556789999999999999964
No 12
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=44.82 E-value=30 Score=22.11 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhcCchHHHHhCCCCCCC
Q 032457 18 EYSYFSTTLNLYFKYNVTRVLNEAGYLPSN 47 (140)
Q Consensus 18 ~~~YF~~al~L~~k~ni~~~L~~~gI~Ps~ 47 (140)
...||+. .+++.++.+.|.++|+.+++
T Consensus 32 ~~~rf~~---~L~~~Gv~~~L~~~G~~~GD 58 (69)
T PF09269_consen 32 SLRRFQR---KLKKMGVEKALRKAGAKEGD 58 (69)
T ss_dssp GHHHHHH---HHHHTTHHHHHHTTT--TT-
T ss_pred HHHHHHH---HHHHCCHHHHHHHcCCCCCC
Confidence 3566655 46789999999999999864
No 13
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=41.33 E-value=50 Score=22.00 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=28.0
Q ss_pred cCchHHHHhCCCCCCCCCCCChHHHHHHHHHHhCCccE-EEeccC
Q 032457 32 YNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPK-LDCSKD 75 (140)
Q Consensus 32 ~ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~~g~~p~-l~C~~~ 75 (140)
.+++.+|-.. +..|+.++++++|.+.||.... -.|+..
T Consensus 7 HeVL~mmi~~------~~~~t~~~L~~ai~~~FG~~arFhTCSae 45 (78)
T PF10678_consen 7 HEVLNMMIES------GNPYTKEELKAAIIEKFGEDARFHTCSAE 45 (78)
T ss_pred HHHHHHHHHc------CCCcCHHHHHHHHHHHhCCCceEEecCCC
Confidence 3455666443 4689999999999999997664 558754
No 14
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=38.53 E-value=65 Score=21.46 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=27.4
Q ss_pred CchHHHHhCCCCCCCCCCCChHHHHHHHHHHhCCccE-EEeccC
Q 032457 33 NVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPK-LDCSKD 75 (140)
Q Consensus 33 ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~~g~~p~-l~C~~~ 75 (140)
+++.+|-.. +..|+.++++.+|.+.||.... -.|+..
T Consensus 6 eVL~mml~~------~~~~t~~~L~~~i~~~FG~~arFhTCSa~ 43 (77)
T TIGR03853 6 EVLNLMLAS------GEPYTRESLKAAIEQKFGEDARFHTCSAE 43 (77)
T ss_pred HHHHHHHHc------CCCcCHHHHHHHHHHHhCCCceEeecccc
Confidence 455555443 4689999999999999997764 558754
No 15
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=37.56 E-value=14 Score=17.36 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=8.7
Q ss_pred eeeeccCCCCC
Q 032457 130 AIPWILENEPL 140 (140)
Q Consensus 130 ~~~~~~~~~~~ 140 (140)
..-|+-|+.||
T Consensus 5 ~~~wlFEtqpl 15 (16)
T PF08043_consen 5 TTRWLFETQPL 15 (16)
T ss_pred eeEEEeecccC
Confidence 35699999986
No 16
>PF13041 PPR_2: PPR repeat family
Probab=31.33 E-value=39 Score=19.30 Aligned_cols=36 Identities=8% Similarity=0.266 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCchHHHHhCCCCCCCCCCCChHHHHHHH
Q 032457 22 FSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAI 60 (140)
Q Consensus 22 F~~al~L~~k~ni~~~L~~~gI~Ps~~~~~~~~~I~~ai 60 (140)
|.+.-++-+.+.+.+-+.+.|+.|+ .++..-+.+++
T Consensus 13 ~~~~~~~~~a~~l~~~M~~~g~~P~---~~Ty~~li~~~ 48 (50)
T PF13041_consen 13 YCKAGKFEEALKLFKEMKKRGIKPD---SYTYNILINGL 48 (50)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Confidence 3333444444555556678899995 34555555443
No 17
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=29.79 E-value=52 Score=19.90 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=24.4
Q ss_pred HHHHHHhcCchHHHHhCCCCCCCCCCCChHHHHHHHH
Q 032457 25 TLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQ 61 (140)
Q Consensus 25 al~L~~k~ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~ 61 (140)
+++--=+++|.+++.++| +...|.+||...+.
T Consensus 2 aLk~aveLgI~dii~~~g-----~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 2 ALKCAVELGIPDIIHNAG-----GGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHTTHHHHHHHHT-----TS-BEHHHHHHTST
T ss_pred cHHHHHHcCcHHHHHHcC-----CCCCCHHHHHHHcC
Confidence 455556789999999997 35789999977765
No 18
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=29.43 E-value=23 Score=21.21 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=10.1
Q ss_pred ccccccccCCCCCCCHHHHHHH
Q 032457 3 LAEKHGTCSFPVVRDEYSYFST 24 (140)
Q Consensus 3 eW~KHGTCs~~~~~~~~~YF~~ 24 (140)
=|+++|+ +..+||+.
T Consensus 12 PWr~pGa-------DisDyFNY 26 (45)
T PF05182_consen 12 PWRKPGA-------DISDYFNY 26 (45)
T ss_pred CccCCCC-------ChhhhcCC
Confidence 3899982 45678754
No 19
>PF10495 PACT_coil_coil: Pericentrin-AKAP-450 domain of centrosomal targeting protein; InterPro: IPR019528 This entry represents a coiled-coil region close to the C terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C terminus of coiled-coil proteins from Drosophila and Schizosaccharomyces pombe (Fission yeast), and in the Drosophila protein it is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain, indicating that this protein at least is likely to contribute to centrosome assembly [].
Probab=29.32 E-value=1.7e+02 Score=19.19 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcC--chHHHHhCCCCCC--CCCCCChHHHHHHHHH
Q 032457 18 EYSYFSTTLNLYFKYN--VTRVLNEAGYLPS--NTEKYPLGGIVSAIQN 62 (140)
Q Consensus 18 ~~~YF~~al~L~~k~n--i~~~L~~~gI~Ps--~~~~~~~~~I~~ai~~ 62 (140)
|-.|....+.-++.-| ...+|+.-|+.|+ ....-....+..++..
T Consensus 15 qKkyL~l~l~~~~~c~~a~L~~i~~mg~~p~~~~~~~~~~~~fks~~~~ 63 (78)
T PF10495_consen 15 QKKYLLLLLGGYQACNQADLRMIAQMGVQPSDRSRSRKPRRKFKSAVRA 63 (78)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCccccCCCCcccHHHHHHH
Confidence 6789999998888777 5677899999987 3333345555555543
No 20
>cd07884 RHD-n_Relish N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Relish protein, in which the RHD domain co-occurs with C-terminal ankyrin repeats. Family members are sometimes referred to as p110 or p68 (proteolytically processed form). Relish is an NF-kappa B-like transcription factor, which plays a role in mediating innate immunity in Drosophila. It is activated via the Imd (immune deficiency) pathway, which triggers phosphorylation of Relish. IKK-dependent proteolytic cleavage of Relish (which involves Dredd) results in a smaller active form (without the C-terminal ankyrin repeats), which is transported into the nucleus and functions as a transactivator.
Probab=26.34 E-value=33 Score=25.95 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=24.2
Q ss_pred HHhCCCCCCCCCCCChHHHHHHHHHHhCCccEEEeccCCcceEEEEEeC
Q 032457 38 LNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKDAVNELHLCFYK 86 (140)
Q Consensus 38 L~~~gI~Ps~~~~~~~~~I~~ai~~~~g~~p~l~C~~~~L~EV~iC~d~ 86 (140)
|.+-|| +-.+..+|.++|.+. ..-.|..|||||..
T Consensus 100 F~nLGI-----qcv~Kk~v~~~L~~r---------~~idLn~VRLcFqa 134 (159)
T cd07884 100 FQNMGI-----IHTAKKNIPEELYKK---------KNMNLNQVVLRFQA 134 (159)
T ss_pred eCCcce-----EEEEecchHHHHhhh---------cccCcccEEEEEEE
Confidence 555566 356777787777764 22359999999985
No 21
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=23.73 E-value=59 Score=23.17 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=23.6
Q ss_pred CchHHHHhCCCCCCCCCCCChHHHHHHHHHH
Q 032457 33 NVTRVLNEAGYLPSNTEKYPLGGIVSAIQNA 63 (140)
Q Consensus 33 ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~ 63 (140)
+|..++++.=|-|..+..|+...|+.|++.+
T Consensus 5 eI~~~Ia~~~VnP~T~rP~p~~~IE~Am~e~ 35 (125)
T PF09377_consen 5 EIATIIAEKCVNPRTNRPYPPTRIEKAMKEA 35 (125)
T ss_dssp HHHHHHHHHEEBTTTTBTT-HHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCCCCCCCHHHHHHHHHhC
Confidence 3456667777889889999999999999663
No 22
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=21.99 E-value=1.1e+02 Score=23.59 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=18.2
Q ss_pred chHHHHhCCCCCCC-------CCCCChHHHHHHHHH
Q 032457 34 VTRVLNEAGYLPSN-------TEKYPLGGIVSAIQN 62 (140)
Q Consensus 34 i~~~L~~~gI~Ps~-------~~~~~~~~I~~ai~~ 62 (140)
+.++|+..||.|.+ .+-|+.++|.+|+..
T Consensus 148 La~~L~~ygI~s~~ir~~~~~~KGY~r~~f~DAw~R 183 (184)
T PF12307_consen 148 LAKLLKEYGIRSKNIRFGGSQAKGYRREDFADAWAR 183 (184)
T ss_pred HHHHHHHCCCCCCceeeCCCCCCceeHHHHHHHHHh
Confidence 34556666666652 345777888777753
No 23
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=20.97 E-value=1e+02 Score=18.45 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=17.9
Q ss_pred chHHHHhCCCCCCCCCCCChHHHHHHHHHHhCCc
Q 032457 34 VTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHAT 67 (140)
Q Consensus 34 i~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~~g~~ 67 (140)
+.++|+..+. .+.|..+|+.++.+.+|+.
T Consensus 9 i~~iL~~~dl-----~~vT~k~vr~~Le~~~~~d 37 (54)
T PF08766_consen 9 IREILREADL-----DTVTKKQVREQLEERFGVD 37 (54)
T ss_dssp HHHHHTTS-G-----GG--HHHHHHHHHHH-SS-
T ss_pred HHHHHHhCCH-----hHhhHHHHHHHHHHHHCCC
Confidence 3455666543 4689999999999999853
No 24
>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family. This protein family, possibly universal in both archaea and eukaryotes, appears to be involved in (ribosomal) RNA metabolism. Mutations in the human ortholog are associated with Shwachman-Bodian-Diamond syndrome.
Probab=20.51 E-value=1.2e+02 Score=24.26 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=27.7
Q ss_pred cCchHHHHhCCCCCCCCCCCChHHHHHHHHHH
Q 032457 32 YNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNA 63 (140)
Q Consensus 32 ~ni~~~L~~~gI~Ps~~~~~~~~~I~~ai~~~ 63 (140)
-++..++++.-|-|.+...|+...|+.|++++
T Consensus 101 ~~Ii~~Ia~~~VnP~T~~P~p~~rIE~Am~e~ 132 (231)
T TIGR00291 101 NQIINIISRNTINPQTKKPHPPTRIEKALEEA 132 (231)
T ss_pred HHHHHHHHHhCcCCCCCCCCCHHHHHHHHHhc
Confidence 35677888889999999999999999999874
Done!