Query 032459
Match_columns 140
No_of_seqs 113 out of 1826
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 14:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 3.7E-19 8E-24 133.5 10.0 134 3-137 141-274 (968)
2 PLN00113 leucine-rich repeat r 99.8 5.8E-19 1.3E-23 132.5 9.8 138 1-139 163-300 (968)
3 KOG0617 Ras suppressor protein 99.6 4.9E-17 1.1E-21 97.9 -3.7 128 3-135 34-185 (264)
4 KOG0617 Ras suppressor protein 99.5 1.7E-16 3.6E-21 95.6 -2.6 107 25-134 31-138 (264)
5 KOG4194 Membrane glycoprotein 99.5 2.2E-15 4.9E-20 105.1 2.2 133 3-136 174-330 (873)
6 KOG4194 Membrane glycoprotein 99.5 1.1E-15 2.3E-20 106.7 0.4 132 2-134 221-352 (873)
7 PF14580 LRR_9: Leucine-rich r 99.5 4.6E-14 9.9E-19 86.4 6.1 124 3-131 20-148 (175)
8 KOG0444 Cytoskeletal regulator 99.4 1.6E-14 3.4E-19 102.2 -1.1 132 3-137 127-259 (1255)
9 PLN03150 hypothetical protein; 99.4 1.4E-12 3E-17 94.3 8.1 106 29-134 420-526 (623)
10 PF14580 LRR_9: Leucine-rich r 99.4 1E-12 2.2E-17 80.5 5.4 109 25-138 17-128 (175)
11 PLN03150 hypothetical protein; 99.4 3.2E-12 7E-17 92.4 7.8 107 4-111 420-527 (623)
12 KOG0618 Serine/threonine phosp 99.3 1.2E-13 2.6E-18 100.4 -0.2 129 1-133 382-510 (1081)
13 KOG0472 Leucine-rich repeat pr 99.3 2E-13 4.3E-18 91.8 -0.2 112 22-136 430-541 (565)
14 KOG0444 Cytoskeletal regulator 99.3 3E-13 6.6E-18 95.8 -0.7 109 1-112 77-186 (1255)
15 cd00116 LRR_RI Leucine-rich re 99.3 8.2E-13 1.8E-17 88.3 1.0 134 2-136 81-234 (319)
16 KOG0618 Serine/threonine phosp 99.3 2.3E-13 5E-18 99.0 -2.3 128 3-134 360-487 (1081)
17 PF13855 LRR_8: Leucine rich r 99.3 1.1E-11 2.3E-16 63.4 4.1 61 2-63 1-61 (61)
18 KOG0472 Leucine-rich repeat pr 99.2 1.8E-13 3.9E-18 92.0 -3.6 125 3-135 184-309 (565)
19 cd00116 LRR_RI Leucine-rich re 99.2 1.5E-12 3.3E-17 87.0 0.5 112 26-137 164-292 (319)
20 PLN03210 Resistant to P. syrin 99.2 1.6E-10 3.4E-15 88.8 10.3 58 2-61 634-691 (1153)
21 PLN03210 Resistant to P. syrin 99.2 2.9E-10 6.4E-15 87.4 11.1 125 4-134 591-715 (1153)
22 PF13855 LRR_8: Leucine rich r 99.2 7E-11 1.5E-15 60.4 4.6 61 27-87 1-61 (61)
23 KOG1909 Ran GTPase-activating 99.1 1.3E-11 2.8E-16 81.5 1.4 135 2-136 92-254 (382)
24 PRK15387 E3 ubiquitin-protein 99.1 2.6E-10 5.7E-15 83.8 6.8 102 28-139 343-461 (788)
25 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.5E-16 81.0 -0.8 127 4-137 286-413 (490)
26 KOG4237 Extracellular matrix p 99.1 4.6E-12 9.9E-17 85.1 -3.3 130 4-134 69-199 (498)
27 KOG3207 Beta-tubulin folding c 99.1 3.1E-11 6.7E-16 81.9 0.2 63 74-136 245-314 (505)
28 PRK15370 E3 ubiquitin-protein 99.0 9E-10 1.9E-14 81.0 6.8 120 3-136 242-380 (754)
29 PRK15370 E3 ubiquitin-protein 99.0 8.5E-09 1.8E-13 76.0 9.6 53 5-64 181-233 (754)
30 KOG1259 Nischarin, modulator o 98.9 2.8E-10 6E-15 74.7 0.4 107 24-136 281-387 (490)
31 KOG4237 Extracellular matrix p 98.9 1.5E-10 3.1E-15 78.0 -1.4 117 16-135 59-176 (498)
32 COG4886 Leucine-rich repeat (L 98.9 1.5E-09 3.2E-14 74.9 3.3 129 3-138 141-292 (394)
33 PRK15387 E3 ubiquitin-protein 98.8 2.9E-08 6.2E-13 73.4 8.5 96 5-113 204-316 (788)
34 COG4886 Leucine-rich repeat (L 98.8 2.7E-09 5.9E-14 73.6 2.0 131 2-137 116-269 (394)
35 KOG0532 Leucine-rich repeat (L 98.7 1.1E-09 2.3E-14 77.0 -0.8 103 29-136 145-247 (722)
36 COG5238 RNA1 Ran GTPase-activa 98.7 8.6E-09 1.9E-13 66.8 2.7 136 1-136 91-255 (388)
37 KOG1644 U2-associated snRNP A' 98.7 1.1E-07 2.3E-12 59.1 6.3 106 25-132 40-149 (233)
38 KOG3207 Beta-tubulin folding c 98.7 2.9E-09 6.4E-14 72.6 -0.7 86 50-136 245-339 (505)
39 KOG0532 Leucine-rich repeat (L 98.7 8.6E-10 1.9E-14 77.4 -3.3 123 6-136 102-224 (722)
40 KOG1909 Ran GTPase-activating 98.6 7.2E-09 1.6E-13 68.8 -0.1 133 2-135 157-310 (382)
41 KOG4658 Apoptotic ATPase [Sign 98.6 3.8E-08 8.3E-13 73.8 3.2 128 2-130 545-675 (889)
42 KOG3665 ZYG-1-like serine/thre 98.6 1.1E-08 2.3E-13 75.0 0.1 134 3-138 123-265 (699)
43 KOG4579 Leucine-rich repeat (L 98.5 3.4E-09 7.3E-14 62.0 -2.5 81 4-87 55-135 (177)
44 KOG1644 U2-associated snRNP A' 98.4 8.5E-07 1.8E-11 55.2 5.1 107 28-137 20-127 (233)
45 KOG0531 Protein phosphatase 1, 98.4 5.6E-08 1.2E-12 67.7 -0.2 107 24-135 92-198 (414)
46 PF12799 LRR_4: Leucine Rich r 98.4 3.5E-07 7.5E-12 43.3 2.5 35 29-64 3-37 (44)
47 KOG1859 Leucine-rich repeat pr 98.4 2.2E-09 4.7E-14 77.6 -7.8 14 73-86 207-220 (1096)
48 PF12799 LRR_4: Leucine Rich r 98.3 6.4E-07 1.4E-11 42.4 3.0 36 76-112 2-37 (44)
49 KOG4579 Leucine-rich repeat (L 98.3 1.7E-08 3.7E-13 59.1 -3.4 84 26-112 52-136 (177)
50 KOG4658 Apoptotic ATPase [Sign 98.3 7.5E-07 1.6E-11 67.1 4.1 108 25-133 543-652 (889)
51 KOG2120 SCF ubiquitin ligase, 98.3 4.3E-09 9.3E-14 69.0 -7.5 131 3-133 186-323 (419)
52 KOG1859 Leucine-rich repeat pr 98.2 2.5E-08 5.3E-13 72.4 -4.5 107 24-135 184-291 (1096)
53 KOG0531 Protein phosphatase 1, 98.2 2.2E-07 4.7E-12 64.8 -0.4 106 1-112 94-199 (414)
54 KOG3665 ZYG-1-like serine/thre 98.2 1.1E-06 2.4E-11 64.6 2.6 112 1-114 147-265 (699)
55 KOG2739 Leucine-rich acidic nu 98.1 1.6E-06 3.5E-11 55.8 1.7 106 24-131 40-151 (260)
56 KOG2120 SCF ubiquitin ligase, 98.0 2.3E-07 5.1E-12 61.1 -3.1 129 3-133 235-373 (419)
57 PF13306 LRR_5: Leucine rich r 98.0 5.9E-05 1.3E-09 43.9 6.9 108 19-131 4-111 (129)
58 PF13306 LRR_5: Leucine rich r 97.9 7.5E-05 1.6E-09 43.5 6.9 118 2-126 12-129 (129)
59 KOG2982 Uncharacterized conser 97.9 2.3E-05 4.9E-10 52.0 3.8 83 2-85 71-156 (418)
60 PRK15386 type III secretion pr 97.7 0.00033 7.2E-09 48.8 8.1 53 2-61 52-104 (426)
61 KOG2739 Leucine-rich acidic nu 97.5 7.5E-05 1.6E-09 48.3 2.4 92 43-136 35-129 (260)
62 KOG2982 Uncharacterized conser 97.5 1.4E-05 3E-10 53.0 -1.0 88 24-111 68-158 (418)
63 KOG2123 Uncharacterized conser 97.5 1.8E-06 3.9E-11 56.5 -5.1 81 3-88 20-101 (388)
64 KOG2123 Uncharacterized conser 97.4 2.9E-06 6.4E-11 55.5 -4.9 102 24-129 16-123 (388)
65 COG5238 RNA1 Ran GTPase-activa 97.1 0.0017 3.7E-08 43.0 5.2 38 99-136 185-227 (388)
66 PRK15386 type III secretion pr 97.1 0.0024 5.2E-08 44.6 6.2 50 3-62 73-123 (426)
67 PF00560 LRR_1: Leucine Rich R 96.6 0.0011 2.3E-08 26.3 1.1 11 4-14 2-12 (22)
68 KOG3864 Uncharacterized conser 96.4 0.00037 8E-09 43.7 -1.4 82 28-109 102-186 (221)
69 PF13504 LRR_7: Leucine rich r 95.8 0.0063 1.4E-07 22.4 1.2 9 30-38 4-12 (17)
70 smart00370 LRR Leucine-rich re 94.9 0.022 4.8E-07 23.3 1.5 20 2-22 2-21 (26)
71 smart00369 LRR_TYP Leucine-ric 94.9 0.022 4.8E-07 23.3 1.5 20 2-22 2-21 (26)
72 KOG1947 Leucine rich repeat pr 94.6 0.005 1.1E-07 43.6 -1.4 12 25-36 212-223 (482)
73 KOG3864 Uncharacterized conser 94.5 0.0033 7.2E-08 39.6 -2.2 90 43-132 93-185 (221)
74 KOG1947 Leucine rich repeat pr 94.3 0.014 3.1E-07 41.3 0.3 60 74-133 242-305 (482)
75 KOG4341 F-box protein containi 94.1 0.012 2.7E-07 41.0 -0.2 110 24-133 317-436 (483)
76 PF13516 LRR_6: Leucine Rich r 94.1 0.028 6E-07 22.5 0.9 15 123-137 2-16 (24)
77 smart00368 LRR_RI Leucine rich 91.8 0.12 2.6E-06 21.6 1.2 14 123-136 2-15 (28)
78 KOG0473 Leucine-rich repeat pr 89.0 0.0041 8.8E-08 40.3 -6.5 86 24-112 39-124 (326)
79 smart00365 LRR_SD22 Leucine-ri 88.3 0.44 9.5E-06 19.6 1.5 14 27-40 2-15 (26)
80 KOG4341 F-box protein containi 87.1 0.34 7.5E-06 34.3 1.2 109 2-110 320-437 (483)
81 KOG4308 LRR-containing protein 86.7 0.0014 3E-08 46.8 -10.7 38 99-136 262-303 (478)
82 KOG0473 Leucine-rich repeat pr 81.9 0.018 3.9E-07 37.5 -6.1 89 46-137 37-125 (326)
83 smart00367 LRR_CC Leucine-rich 81.1 0.9 2E-05 18.4 0.8 13 1-13 1-13 (26)
84 smart00364 LRR_BAC Leucine-ric 78.1 1.8 3.8E-05 17.9 1.2 13 28-40 3-15 (26)
85 KOG3763 mRNA export factor TAP 69.7 2.9 6.3E-05 30.9 1.4 65 49-113 216-284 (585)
86 KOG3763 mRNA export factor TAP 57.3 5.7 0.00012 29.4 1.1 62 25-88 216-283 (585)
87 TIGR00864 PCC polycystin catio 49.8 11 0.00023 33.6 1.6 32 8-40 1-32 (2740)
88 TIGR00864 PCC polycystin catio 36.0 24 0.00052 31.7 1.6 32 33-64 1-32 (2740)
89 smart00446 LRRcap occurring C- 25.3 29 0.00062 14.3 0.3 15 118-132 8-22 (26)
90 PF07723 LRR_2: Leucine Rich R 21.8 47 0.001 13.3 0.6 11 4-14 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=3.7e-19 Score=133.51 Aligned_cols=134 Identities=41% Similarity=0.615 Sum_probs=63.7
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
+|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+.+|+.+++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 34444444444433333333 34455555555555554444554555555555555555544444444444445555555
Q ss_pred cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++|.+.+..|..+..+++|+++++++|.+++..|..+..+++|+.|++++|.+.+
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 5544444444444444445555554444444444444444444444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=5.8e-19 Score=132.48 Aligned_cols=138 Identities=43% Similarity=0.662 Sum_probs=91.3
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|+.|++.+|.+++..|..+..+++|+.|
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 3567777777777766666654 567777777777777766666666667777777777776665666666666667777
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 139 (140)
++++|.+.+..|..+..+++|+++++++|.+++..|..+..+++|+.|++++|.+.+.+
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 77666666666666666666666666666666555555556666666666666555443
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=4.9e-17 Score=97.86 Aligned_cols=128 Identities=30% Similarity=0.555 Sum_probs=74.4
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
+++.|.+++|.++ .+|+.+ +.+.+|+.|.+.+|++. .+|.+++++++|+.|++..|++. ..|..|+.++.|+.+++
T Consensus 34 ~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 4455566666663 556655 55667777777777766 56666666777777776666665 56666666666666666
Q ss_pred cCCcccc-c-----------------------CChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 83 RGNQLQG-E-----------------------IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 83 ~~~~~~~-~-----------------------~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
..|.+.. . .|..++.++++..+.+.+|.+. .+|..++.++.|++|.+++|.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 6665542 2 2333444444555554444443 3445555555555555555543
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.7e-16 Score=95.61 Aligned_cols=107 Identities=29% Similarity=0.489 Sum_probs=88.7
Q ss_pred CCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEE
Q 032459 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104 (140)
Q Consensus 25 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l 104 (140)
.+..++.|.++.|.++ .+|..++.+.+|+.|++.+|.+. ..|..++.+++|++++++.|++. ..|..|+.++.++++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4678899999999999 78888999999999999999999 78999999999999999999987 789999999999999
Q ss_pred ecccccccc-cCcccccCCCCCCeEEcCCCc
Q 032459 105 WLQNNFLTR-AIPSSIFNLSSLSNLDLSVNN 134 (140)
Q Consensus 105 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~ 134 (140)
++.-|.+.+ .+|..|+-+..|+.|++++|.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDND 138 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCC
Confidence 998777653 345555555555555555553
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.54 E-value=2.2e-15 Score=105.09 Aligned_cols=133 Identities=24% Similarity=0.226 Sum_probs=68.7
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecccc-------------------
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDF------------------- 63 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~------------------- 63 (140)
++++|++++|.++ .+....|.++..|..|.|+.|.++...+..|..+++|+.|++.+|++
T Consensus 174 ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 4555666666553 33433344555555555555555522222333344555555444443
Q ss_pred -----ccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 64 -----SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 64 -----~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
.......|..+.+++++++..|++.......+..+..|++|+++.|.+..+.++.|.-.++|++|+++.|.++
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 3223344445555566666655555333344445555666666666665555566666666666666665543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.54 E-value=1.1e-15 Score=106.69 Aligned_cols=132 Identities=22% Similarity=0.176 Sum_probs=82.0
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.|++..|.+. ....-.|++++.|+.|.+..|.+...-.+.|..+.+++.|++..|+++.....++..+..|+.|+
T Consensus 221 ~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 221 PKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred chhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 34444444444432 22222334444444444555555544455666677788888888887766666777777788888
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCc
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN 134 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 134 (140)
++.|.|....++.+...++|++|+++.|.++...++.+..+..|++|.++.|.
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 88887777777777777788888888877776655555555555555555544
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.51 E-value=4.6e-14 Score=86.36 Aligned_cols=124 Identities=30% Similarity=0.395 Sum_probs=52.5
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhh-ccCCCccEEE
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLY 81 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~ 81 (140)
++++|+++++.+. .+. .+-..+.+|+.|++++|+++ .+. .+..++.|+.|++++|+++. ..+.+ ..+++|+.|.
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 5788999999885 443 33235789999999999998 343 46788999999999999984 34444 4688999999
Q ss_pred ecCCcccccC-ChhccCCCCCcEEecccccccccCc---ccccCCCCCCeEEcC
Q 032459 82 LRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLS 131 (140)
Q Consensus 82 l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~ 131 (140)
+++|++.+.. ...+..+++|+.+++.+|+++...- .++..+|+|+.||-.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999987433 3667788999999999999985421 245678999988753
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.41 E-value=1.6e-14 Score=102.16 Aligned_cols=132 Identities=24% Similarity=0.384 Sum_probs=91.8
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
++-.|++++|.+ +++|..+|-.+..|-.|||++|.+. .+|..+..+..||+|.+++|.+.-..-..+..|..|+.|.+
T Consensus 127 n~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 127 NSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 445677777776 4777777777777777788888776 67777777778888888877765322334445566666666
Q ss_pred cCCccc-ccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 83 RGNQLQ-GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++.+.+ ...|..+..+.+|+-++++.|.+. .+|+.+..+++|+.|++++|.+++
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee
Confidence 665443 345666667777777788777775 667777788888888888887653
No 9
>PLN03150 hypothetical protein; Provisional
Probab=99.40 E-value=1.4e-12 Score=94.31 Aligned_cols=106 Identities=32% Similarity=0.517 Sum_probs=75.2
Q ss_pred ccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEeccc
Q 032459 29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN 108 (140)
Q Consensus 29 L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 108 (140)
++.|+|.+|++.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66677777777777777777777777777777777766677777777777777777777777777777777777777777
Q ss_pred ccccccCcccccCC-CCCCeEEcCCCc
Q 032459 109 NFLTRAIPSSIFNL-SSLSNLDLSVNN 134 (140)
Q Consensus 109 ~~~~~~~~~~~~~~-~~L~~l~l~~n~ 134 (140)
|.+++..|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77777777665542 345566666654
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.38 E-value=1e-12 Score=80.51 Aligned_cols=109 Identities=25% Similarity=0.327 Sum_probs=44.0
Q ss_pred CCCcccEEEccCCccccCCCcCCc-CCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhc-cCCCCCc
Q 032459 25 HLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELE 102 (140)
Q Consensus 25 ~l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~l~ 102 (140)
...++++|++.+|+|+. +. .+. .+.+|+.|++++|.++. -+.+..+++|+.|++++|+++.. ...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 45578999999999983 33 344 57899999999999984 24677899999999999999843 3334 4689999
Q ss_pred EEecccccccccCc-ccccCCCCCCeEEcCCCcccee
Q 032459 103 MLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 103 ~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
.+++++|.+.+... ..+..+++|+.|++.+|++++.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 99999999976332 6678899999999999998753
No 11
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=3.2e-12 Score=92.42 Aligned_cols=107 Identities=31% Similarity=0.533 Sum_probs=95.8
Q ss_pred ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459 4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (140)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 83 (140)
++.|+++++.+.+.+|..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6778999999988888887 779999999999999999999999999999999999999998899999999999999999
Q ss_pred CCcccccCChhccCC-CCCcEEecccccc
Q 032459 84 GNQLQGEIPEELGNL-AELEMLWLQNNFL 111 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~l~~l~l~~~~~ 111 (140)
+|.+.+..|..+... .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 999999999877643 4567788888764
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=1.2e-13 Score=100.45 Aligned_cols=129 Identities=26% Similarity=0.323 Sum_probs=90.1
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+ +++|+..+.++..|++|+++||.++ .+|..+..++.|++|....|.+. ..| .+..++.|+.+
T Consensus 382 ~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL 457 (1081)
T ss_pred ccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence 35777888888877 4777777777888888888888887 67777777888888888777776 455 66677888888
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCC
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 133 (140)
|++.|.++.....+....++|++++++||.........+..+.++...++.-+
T Consensus 458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 88888776433333233377888888888754444455556666666665544
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=2e-13 Score=91.83 Aligned_cols=112 Identities=30% Similarity=0.438 Sum_probs=94.8
Q ss_pred cccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCC
Q 032459 22 FCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL 101 (140)
Q Consensus 22 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 101 (140)
...++++|+.|++++|-+. .+|..+..+..||.++++.|++- ..|..+.....++.+-.++|++....++.+..+.+|
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 3367889999999999888 78888888888999999999876 677777777778888788888886666778889999
Q ss_pred cEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 102 EMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 102 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
.++++.+|.+. .+|..++++++|+.|++.+|++.
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99999999986 77889999999999999999885
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.29 E-value=3e-13 Score=95.83 Aligned_cols=109 Identities=28% Similarity=0.387 Sum_probs=87.8
Q ss_pred CCCceEEEccCCeec-ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccE
Q 032459 1 MSSLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79 (140)
Q Consensus 1 l~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 79 (140)
+|+|+.+.++.|.+. +-+|.++| .+..|+.|||+.|++. ++|..+....+.-.|++++|.|.....+.+.++..|-.
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 466777788888876 34888885 5889999999999998 89988888889999999999998544456667888888
Q ss_pred EEecCCcccccCChhccCCCCCcEEeccccccc
Q 032459 80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT 112 (140)
Q Consensus 80 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 112 (140)
|++++|++. ..|....++..|++|.+++|++.
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence 999998887 56777777888888888888764
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=8.2e-13 Score=88.34 Aligned_cols=134 Identities=28% Similarity=0.309 Sum_probs=56.4
Q ss_pred CCceEEEccCCeecccCCcccccCC---CcccEEEccCCcccc----CCCcCCcCC-CCCCEEEeeccccccC----cch
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHL---SNLESLFLKNNMFHG----KIPSTLSNC-KRLRNISLSLDDFSGT----IPK 69 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~l~~----~~~~~~~~~-~~L~~l~l~~~~~~~~----~~~ 69 (140)
++|+.|++++|.+.+..+..+ ..+ ++|++|++++|.+.+ .+...+..+ ++|+.+++++|.++.. .+.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 355555665555532222211 112 235555555555442 111122233 4555555555555421 112
Q ss_pred hhccCCCccEEEecCCcccccC----ChhccCCCCCcEEecccccccccC----cccccCCCCCCeEEcCCCccc
Q 032459 70 EIGNVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 70 ~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~ 136 (140)
.+..+..++.+++++|.+.+.. +..+...++|+.+++++|.+++.. ...+..+++|+.|++++|.++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 2333344555555555544221 112223345555555555443221 122233445555555555443
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.27 E-value=2.3e-13 Score=99.00 Aligned_cols=128 Identities=29% Similarity=0.383 Sum_probs=83.3
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
.|+.|++.+|.+++..-+.+ -.+++|+.|+|+.|.++......+.++..|+.|++++|+++ ..|.....+.+|+.|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchhhh-ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 45556666666654433333 55667777777777666333334556666777777777766 55666666667777766
Q ss_pred cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCc
Q 032459 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN 134 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 134 (140)
.+|.+. ..| ++...+.++.+|++.|.++..........++|++||+++|.
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 666665 445 67777888888888888765433333444788888888875
No 17
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.25 E-value=1.1e-11 Score=63.45 Aligned_cols=61 Identities=38% Similarity=0.554 Sum_probs=41.3
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecccc
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDF 63 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~ 63 (140)
|+|++|++++|.+. .++...|..+++|++|++++|.++...+..|..+++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46677777777663 66666666677777777777777655556666677777777766653
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.24 E-value=1.8e-13 Score=92.05 Aligned_cols=125 Identities=33% Similarity=0.548 Sum_probs=70.3
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcc-hhhccCCCccEEE
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIP-KEIGNVTKLIRLY 81 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~ 81 (140)
+|++|+...|.+ +++|+++ ..+.+|..|+++.|.+. .+| .|..+..|+.+..+.|.+. ..| +...+++++..++
T Consensus 184 ~L~~ld~~~N~L-~tlP~~l-g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 184 RLKHLDCNSNLL-ETLPPEL-GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHhcccchhhh-hcCChhh-cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeee
Confidence 444555555444 3555555 44555555555555555 444 4555555555555555555 333 2333566666666
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
+.+|+++ ..|+++.-+.+++.+++++|.++ ..|-.++++ .|+.+.+-+|++
T Consensus 259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 259 LRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 6666666 55666655666666666666665 345556666 666666666654
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.23 E-value=1.5e-12 Score=87.03 Aligned_cols=112 Identities=22% Similarity=0.205 Sum_probs=51.3
Q ss_pred CCcccEEEccCCccccC----CCcCCcCCCCCCEEEeeccccccCc----chhhccCCCccEEEecCCcccccCChhcc-
Q 032459 26 LSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFSGTI----PKEIGNVTKLIRLYLRGNQLQGEIPEELG- 96 (140)
Q Consensus 26 l~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~- 96 (140)
+++|++|++++|.+++. ++..+..+++|+.|++++|.++... ...+..+++|+.+++++|.+.+.....+.
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 243 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence 34455555555554421 1112223345555555555544221 12233445566666665555432221111
Q ss_pred ----CCCCCcEEecccccccc----cCcccccCCCCCCeEEcCCCccce
Q 032459 97 ----NLAELEMLWLQNNFLTR----AIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 97 ----~~~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
..+.|+.+++.+|.+++ ...+.+...++|+.+++++|.+++
T Consensus 244 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 244 ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 12456666666665542 122333444566666666666553
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.21 E-value=1.6e-10 Score=88.85 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=29.1
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~ 61 (140)
++|+.|+++++.....+|. + ..+++|+.|++.+|.....+|..+..+++|+.|++.+|
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 4455555555443334442 1 34555555555555433445555555555555555544
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.20 E-value=2.9e-10 Score=87.40 Aligned_cols=125 Identities=29% Similarity=0.337 Sum_probs=75.2
Q ss_pred ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459 4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (140)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 83 (140)
|+.|.+.++.+ ..+|..+ .+.+|++|++.++.+. .++..+..+++|+.++++++......| .+..+++|+.|+++
T Consensus 591 Lr~L~~~~~~l-~~lP~~f--~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPL-RCMPSNF--RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCC-CCCCCcC--CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 44455555444 2445443 2456777777777766 455556667777777777654332333 35566777777777
Q ss_pred CCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCc
Q 032459 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN 134 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 134 (140)
+|......|..+..+++|+.+++.+|.....+|..+ ++++|+.|++++|.
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 765544566666777777777777765333444333 45666666666654
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.17 E-value=7e-11 Score=60.38 Aligned_cols=61 Identities=34% Similarity=0.449 Sum_probs=41.0
Q ss_pred CcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcc
Q 032459 27 SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQL 87 (140)
Q Consensus 27 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 87 (140)
|+|++|++++|.++...+..|..+++|+++++++|.++...+..|..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777754445666677777777777777655556666777777777766653
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=1.3e-11 Score=81.50 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=102.1
Q ss_pred CCceEEEccCCeecccCCcc---cccCCCcccEEEccCCccccCC-------------CcCCcCCCCCCEEEeecccccc
Q 032459 2 SSLLSIRFTNNTLFGELPPN---FCNHLSNLESLFLKNNMFHGKI-------------PSTLSNCKRLRNISLSLDDFSG 65 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~~~-------------~~~~~~~~~L~~l~l~~~~~~~ 65 (140)
|+|+++++++|.+....+.. +..++..|++|+|.+|++.... .+-..+-+.|+++.+.+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 68999999999997554433 4467889999999999987221 1223456889999999999874
Q ss_pred C----cchhhccCCCccEEEecCCcccccC----ChhccCCCCCcEEeccccccccc----CcccccCCCCCCeEEcCCC
Q 032459 66 T----IPKEIGNVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRA----IPSSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 66 ~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n 133 (140)
. +...+...+.++.+.++.|.+.-.. ...+.+++.|++|++.+|.++.. +...+..+++|+++++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 3 2345666789999999999886322 24567899999999999998753 3355667888999999998
Q ss_pred ccc
Q 032459 134 NLT 136 (140)
Q Consensus 134 ~~~ 136 (140)
.+.
T Consensus 252 ll~ 254 (382)
T KOG1909|consen 252 LLE 254 (382)
T ss_pred ccc
Confidence 764
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.10 E-value=2.6e-10 Score=83.76 Aligned_cols=102 Identities=26% Similarity=0.383 Sum_probs=66.3
Q ss_pred cccEEEccCCccccCCCcCCcC-----------------CCCCCEEEeeccccccCcchhhccCCCccEEEecCCccccc
Q 032459 28 NLESLFLKNNMFHGKIPSTLSN-----------------CKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGE 90 (140)
Q Consensus 28 ~L~~L~l~~~~l~~~~~~~~~~-----------------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 90 (140)
.|+.|++++|.++ .+|..... ..+|+.|++++|.++ ..|.. ...|+.|++++|.+. .
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred ccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence 6778888888777 34432111 124555666666555 23322 245666777777665 2
Q ss_pred CChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459 91 IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 91 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 139 (140)
.|.. ..+++.+++++|.++ .+|..+..+++|+.+++++|++++.+
T Consensus 417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 3432 245677888888887 56888889999999999999998764
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.1e-11 Score=81.02 Aligned_cols=127 Identities=22% Similarity=0.222 Sum_probs=65.4
Q ss_pred ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459 4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (140)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 83 (140)
|+++++++|.++ .+.... .-.|+++.|+++.|++. ..+.+..+.+|+.|++++|.++ .....-..+.+++.+.+.
T Consensus 286 LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~--~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIR--TVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhccccccchh-hhhhhh-hhccceeEEecccccee--eehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 445555555553 333333 22455555555555555 1122445555555566555554 333333444555555555
Q ss_pred CCcccccCChhccCCCCCcEEecccccccccC-cccccCCCCCCeEEcCCCccce
Q 032459 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAI-PSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
.|.+. ..+.+..+-+|..+++.+|.+.... .+.++++|-|+.+.+.+|++.+
T Consensus 361 ~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 55543 1233444455666666666664321 2455666666666666666654
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=4.6e-12 Score=85.06 Aligned_cols=130 Identities=22% Similarity=0.321 Sum_probs=75.9
Q ss_pred ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeec-cccccCcchhhccCCCccEEEe
Q 032459 4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l 82 (140)
..+|++..|.++ .+|+..|..+++|+.|||+.|+|+.+.|..|..++.+-.|.+.+ |+|+......|..+..++.|.+
T Consensus 69 tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345666666663 66666666666666666666666666666666666655555444 6666444455556666666655
Q ss_pred cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCc
Q 032459 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN 134 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 134 (140)
.-|.+.-...+.+..++++..|.+.+|.+...-...+..+.+++.+.+..|+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 5555543334555566666666666666653322345555556665555554
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.1e-11 Score=81.92 Aligned_cols=63 Identities=25% Similarity=0.296 Sum_probs=42.5
Q ss_pred CCCccEEEecCCcccccCC-hhccCCCCCcEEeccccccccc-Cccc-----ccCCCCCCeEEcCCCccc
Q 032459 74 VTKLIRLYLRGNQLQGEIP-EELGNLAELEMLWLQNNFLTRA-IPSS-----IFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 74 ~~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~-~~~~-----~~~~~~L~~l~l~~n~~~ 136 (140)
++.|+.|++++|.+.+... .....++.|+.++++.+.+++. .|++ ...+++|+.|++..|++.
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 4567788888887763321 3445678888888888877653 2232 345678888888888773
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.02 E-value=9e-10 Score=81.05 Aligned_cols=120 Identities=28% Similarity=0.418 Sum_probs=68.6
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhc----------
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG---------- 72 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~---------- 72 (140)
+|+.|++++|.+. .+|..+ ...|+.|++++|.++ .+|..+. .+|+.|++++|.++. .|..+.
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERL---PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccC-cCChhH---hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcC
Confidence 5677888888774 666654 246777777777776 4555443 467777777776652 232111
Q ss_pred ---------cCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 73 ---------NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 73 ---------~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
..++|+.|.+++|.++. .|..+ .++|+.|++++|.++ .+|..+ .++|+.|++++|.++
T Consensus 314 N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 314 NSLTALPETLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred CccccCCccccccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 01345555555555542 23222 246667777776665 334333 246677777776654
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.95 E-value=8.5e-09 Score=76.05 Aligned_cols=53 Identities=17% Similarity=0.375 Sum_probs=23.3
Q ss_pred eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64 (140)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~ 64 (140)
..|++.++.++ .+|..+ .+.++.|++++|.++ .+|..+. .+|+.|++++|.++
T Consensus 181 ~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt 233 (754)
T PRK15370 181 TELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT 233 (754)
T ss_pred eEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc
Confidence 34455544442 344433 234455555555554 3333222 24555555554444
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=2.8e-10 Score=74.66 Aligned_cols=107 Identities=28% Similarity=0.335 Sum_probs=85.2
Q ss_pred cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 103 (140)
..+..|+++|+++|.|+ .+..+..-.|.++.|+++.|++.. -..++.+++|+++++++|.+. .....-..+-++++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 45568999999999998 666667778999999999999973 234888999999999999886 22222235678899
Q ss_pred EecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 104 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
+.+++|.+. ....++.+.+|..||+++|.+.
T Consensus 357 L~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 357 LKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred eehhhhhHh--hhhhhHhhhhheeccccccchh
Confidence 999999885 3466788899999999999763
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.89 E-value=1.5e-10 Score=78.02 Aligned_cols=117 Identities=26% Similarity=0.380 Sum_probs=98.3
Q ss_pred ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecC-CcccccCChh
Q 032459 16 GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG-NQLQGEIPEE 94 (140)
Q Consensus 16 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~ 94 (140)
..+|.++ .+...+++|..|+|+...++.|..+++|+.+++++|.|+...|.+|..+..+..+.+-+ |+|++.....
T Consensus 59 ~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 59 TEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred ccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 3566665 46788899999999977778999999999999999999988899999988876665555 8998666688
Q ss_pred ccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 95 LGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 95 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
|..+..+..|.+.-|.+.-...+.+..+++++.|.+-+|.+
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence 88888888888888888767778899999999999988864
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=1.5e-09 Score=74.90 Aligned_cols=129 Identities=36% Similarity=0.529 Sum_probs=78.3
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
+|+.|+++++.+. .++..+ ..++.|+.|++..|++. .++......+.|+.+++++|.+. ..|........++.+.+
T Consensus 141 nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhhhh-hccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence 5777777777764 444333 45777777777777776 44444445666777777777666 33332222233444444
Q ss_pred cCC-----------------------cccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459 83 RGN-----------------------QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 83 ~~~-----------------------~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
++| ++. ..+..+..++.++++++++|.++.... ++...+++.+++++|.+.+.
T Consensus 217 ~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 217 SNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 444 333 113445556668888888887764433 77778888888888766543
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.83 E-value=2.9e-08 Score=73.36 Aligned_cols=96 Identities=22% Similarity=0.346 Sum_probs=50.8
Q ss_pred eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhc------------
Q 032459 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG------------ 72 (140)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~------------ 72 (140)
..|+++.+.+. ++|..+. ++|+.|++.+|+++ .+|.. .++|+.|++++|.++. .|..+.
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCc-ccCcccccceeeccCCch
Confidence 34666666653 5666542 35666666666665 34432 3556666666665552 232110
Q ss_pred -----cCCCccEEEecCCcccccCChhccCCCCCcEEecccccccc
Q 032459 73 -----NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113 (140)
Q Consensus 73 -----~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 113 (140)
....|..|++++|++. ..|. ..++|+.|++++|.+++
T Consensus 275 ~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 275 THLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS 316 (788)
T ss_pred hhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc
Confidence 0123445555555554 2222 23568888888887764
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=2.7e-09 Score=73.63 Aligned_cols=131 Identities=39% Similarity=0.613 Sum_probs=93.6
Q ss_pred CCceEEEccCCeecccCCcccccCCC-cccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLS-NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+.++.+++.++.+. .++... ...+ +|+.|++++|.+. .++..+..++.|+.|+++.|.+. ..+......+.+..+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCcccc-ccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 35788899999885 677665 3353 8999999999998 66667789999999999999998 455555577899999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccc----------------------cCcccccCCCCCCeEEcCCCccce
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR----------------------AIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~----------------------~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++++|++. ..|........++++.+++|.+.. ..+..+..+++++.++++.|.++.
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 99999988 445443444556666666663211 113344555667777777776543
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=1.1e-09 Score=76.95 Aligned_cols=103 Identities=27% Similarity=0.451 Sum_probs=55.7
Q ss_pred ccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEeccc
Q 032459 29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN 108 (140)
Q Consensus 29 L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 108 (140)
|+.|.+++|.++ .+|..+...++|..++.+.|.+. ..|..+..+..+..+.+.+|.+. ..|.++.. -.|..+|++.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeeeeccc
Confidence 344444444443 34444444444444444444443 23333444444444444444443 34545442 3466778888
Q ss_pred ccccccCcccccCCCCCCeEEcCCCccc
Q 032459 109 NFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
|+++ .+|-.|.+|+.|++|-+.+|++.
T Consensus 221 Nkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred Ccee-ecchhhhhhhhheeeeeccCCCC
Confidence 8776 66777888888888888888763
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.72 E-value=8.6e-09 Score=66.82 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=97.2
Q ss_pred CCCceEEEccCCeecccCCccc---ccCCCcccEEEccCCccccCCCcCC-------------cCCCCCCEEEeeccccc
Q 032459 1 MSSLLSIRFTNNTLFGELPPNF---CNHLSNLESLFLKNNMFHGKIPSTL-------------SNCKRLRNISLSLDDFS 64 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~l~~~~~~~~-------------~~~~~L~~l~l~~~~~~ 64 (140)
||+|+++++++|.+....|..+ .++...|.+|.+++|++--.....+ .+-|.|+++.+.+|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 6899999999999987777653 3677899999999998762211122 34688999999999987
Q ss_pred cCcc----hhhccCCCccEEEecCCcccccCCh-----hccCCCCCcEEeccccccccc----CcccccCCCCCCeEEcC
Q 032459 65 GTIP----KEIGNVTKLIRLYLRGNQLQGEIPE-----ELGNLAELEMLWLQNNFLTRA----IPSSIFNLSSLSNLDLS 131 (140)
Q Consensus 65 ~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~ 131 (140)
.... ..+..-..+..+.+..|.|...... .+..+.+|+++++.+|.++.. +.+.+..++.|++|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 3222 2233335788899999888633211 233568899999999988754 33445567788999999
Q ss_pred CCccc
Q 032459 132 VNNLT 136 (140)
Q Consensus 132 ~n~~~ 136 (140)
+|.++
T Consensus 251 DClls 255 (388)
T COG5238 251 DCLLS 255 (388)
T ss_pred chhhc
Confidence 88764
No 37
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.67 E-value=1.1e-07 Score=59.13 Aligned_cols=106 Identities=23% Similarity=0.258 Sum_probs=77.3
Q ss_pred CCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccC-ChhccCCCCCcE
Q 032459 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEI-PEELGNLAELEM 103 (140)
Q Consensus 25 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~ 103 (140)
.......+||.+|.+. -...|..++.|.+|.+.+|+|+...|..-..++++..|.+.+|.+.... ..-+..+++|+.
T Consensus 40 ~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3456778889888876 2234667888999999999998665555556778999999998876332 244667889999
Q ss_pred EecccccccccCc---ccccCCCCCCeEEcCC
Q 032459 104 LWLQNNFLTRAIP---SSIFNLSSLSNLDLSV 132 (140)
Q Consensus 104 l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~ 132 (140)
+.+-+|+++...- -++..+|+|+.||++.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9999998874311 2345778899998864
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.9e-09 Score=72.57 Aligned_cols=86 Identities=20% Similarity=0.323 Sum_probs=55.8
Q ss_pred CCCCCEEEeeccccccCcc--hhhccCCCccEEEecCCcccccC-Chh-----ccCCCCCcEEecccccccccCc-cccc
Q 032459 50 CKRLRNISLSLDDFSGTIP--KEIGNVTKLIRLYLRGNQLQGEI-PEE-----LGNLAELEMLWLQNNFLTRAIP-SSIF 120 (140)
Q Consensus 50 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~-~~~-----~~~~~~l~~l~l~~~~~~~~~~-~~~~ 120 (140)
+..|+.|++++|.+- ..+ .....++.|.-++++.+++.... |+. ...++++++|++..|++.+.-. ..+.
T Consensus 245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR 323 (505)
T ss_pred hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence 566777777777654 233 34556788888888888876432 222 2356889999999998864322 3344
Q ss_pred CCCCCCeEEcCCCccc
Q 032459 121 NLSSLSNLDLSVNNLT 136 (140)
Q Consensus 121 ~~~~L~~l~l~~n~~~ 136 (140)
.+++|+.+.+..|.++
T Consensus 324 ~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 324 TLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhhccccccc
Confidence 5567777776666654
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.66 E-value=8.6e-10 Score=77.43 Aligned_cols=123 Identities=28% Similarity=0.495 Sum_probs=96.2
Q ss_pred EEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCC
Q 032459 6 SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85 (140)
Q Consensus 6 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 85 (140)
.+.+..|.+. .+|..+ ..+..|+.++|+.|+++ .+|..++.++ |+.|.+++|+++ ..|..++....+..++.+.|
T Consensus 102 ~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 102 SLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred HHHHHhccce-ecchhh-hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhh
Confidence 3344444442 566665 46788999999999998 6777775554 899999999998 67777778888999999999
Q ss_pred cccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 86 QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
.+. ..|..+..+.+++.+.+..|.+. .+|..+..+ .|..||++.|+++
T Consensus 177 ei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 177 EIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred hhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 987 67888888899999999999886 556666644 6889999999875
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.60 E-value=7.2e-09 Score=68.84 Aligned_cols=133 Identities=23% Similarity=0.248 Sum_probs=85.5
Q ss_pred CCceEEEccCCeecccCCc----ccccCCCcccEEEccCCccccC----CCcCCcCCCCCCEEEeeccccccC----cch
Q 032459 2 SSLLSIRFTNNTLFGELPP----NFCNHLSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFSGT----IPK 69 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~ 69 (140)
+.|+.+.+.+|.+. ..+. ..++..+.|+++.++.|+|... ....+..+++|+.|++..|.++.. ...
T Consensus 157 ~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 35677777777653 3232 2446677888888888776622 223456678888888888877632 234
Q ss_pred hhccCCCccEEEecCCcccccCChhcc-----CCCCCcEEecccccccccCc----ccccCCCCCCeEEcCCCcc
Q 032459 70 EIGNVTKLIRLYLRGNQLQGEIPEELG-----NLAELEMLWLQNNFLTRAIP----SSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 70 ~~~~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~n~~ 135 (140)
.++.++.|..+++++|.+.......+. ..++|+++.+.+|.++.... ..+...+.|+.|++++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 555667788888888877654433332 35778888888888764322 2334567788888888877
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.58 E-value=3.8e-08 Score=73.79 Aligned_cols=128 Identities=30% Similarity=0.381 Sum_probs=88.1
Q ss_pred CCceEEEccCCee-cccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
++|+.|-+..+.. ...++..+|..++.|++||+++|.--+.+|..++.+-+|++|++..+.+. ..|..+..+..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 4566666666652 34666666778888888888877655678888888888888888888887 778888888888888
Q ss_pred EecCCcccccCChhccCCCCCcEEeccccccc--ccCcccccCCCCCCeEEc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLT--RAIPSSIFNLSSLSNLDL 130 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~~~~~~~~L~~l~l 130 (140)
++..+......+.....+.+|+++.+...... ......+..+.+|+.+..
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 88877654344555556788888887655421 122233344555554444
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.58 E-value=1.1e-08 Score=74.95 Aligned_cols=134 Identities=20% Similarity=0.264 Sum_probs=90.0
Q ss_pred CceEEEccCCeec-ccCCcccccCCCcccEEEccCCccccC-CCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 3 SLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGK-IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 3 ~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+|+.|++++.... ...+.....-+|.|+.|.+.+..+... ......++++|..||++++.++.. ..++.+.+|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 5777888776543 334445556788999988888776522 223335688899999998888733 677788888888
Q ss_pred EecCCcccc-cCChhccCCCCCcEEecccccccccC------cccccCCCCCCeEEcCCCcccee
Q 032459 81 YLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAI------PSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 81 ~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
.+.+-.+.. .....+..+++|++||++..+..... .+.-..+|+||-||++++.+.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 877755542 22345667888999998876654221 11223578899999988876553
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.55 E-value=3.4e-09 Score=62.02 Aligned_cols=81 Identities=25% Similarity=0.380 Sum_probs=39.6
Q ss_pred ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459 4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (140)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 83 (140)
|+.+++++|.+. ++|+.+-..++.++.+++.+|.+. .+|..++.++.|+.+++++|.+. ..|.-+..+.++..|+..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 344455555542 444444444445555555555554 44444555555555555555554 334444444444444444
Q ss_pred CCcc
Q 032459 84 GNQL 87 (140)
Q Consensus 84 ~~~~ 87 (140)
+|.+
T Consensus 132 ~na~ 135 (177)
T KOG4579|consen 132 ENAR 135 (177)
T ss_pred CCcc
Confidence 4443
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.39 E-value=8.5e-07 Score=55.22 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=80.5
Q ss_pred cccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecc
Q 032459 28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ 107 (140)
Q Consensus 28 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~ 107 (140)
.-+++++.+.++..+ ...-........++++.|.+- ....+..+++|.+|.+.+|+|+...|.--..++++..|.+.
T Consensus 20 ~e~e~~LR~lkip~i-enlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 20 RERELDLRGLKIPVI-ENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccccch-hhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 456677887776622 111123456788899999884 45667889999999999999997766655567889999999
Q ss_pred cccccccC-cccccCCCCCCeEEcCCCccce
Q 032459 108 NNFLTRAI-PSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 108 ~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
+|.+.... .+.+..+|+|++|.+-+|+++.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhc
Confidence 99987543 2667889999999999998754
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=5.6e-08 Score=67.68 Aligned_cols=107 Identities=30% Similarity=0.369 Sum_probs=61.9
Q ss_pred cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 103 (140)
..+..+..+++.+|.+. .+...+..+.+|+.|++++|.|+. -..+..+..|+.|.+.+|.+... ..+..+..++.
T Consensus 92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchh-hcccchhhhhcchheecccccccc--ccchhhccchhhheeccCcchhc--cCCccchhhhc
Confidence 44667777777777776 333325566777777777777753 23344555577777777766522 33334566666
Q ss_pred EecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 104 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
+++++|.++.........+.+++.+.+.+|.+
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 77777766543331034455566666666654
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.38 E-value=3.5e-07 Score=43.33 Aligned_cols=35 Identities=40% Similarity=0.521 Sum_probs=13.8
Q ss_pred ccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459 29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64 (140)
Q Consensus 29 L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~ 64 (140)
|++|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333344444444444444443
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=2.2e-09 Score=77.61 Aligned_cols=14 Identities=36% Similarity=0.247 Sum_probs=5.4
Q ss_pred cCCCccEEEecCCc
Q 032459 73 NVTKLIRLYLRGNQ 86 (140)
Q Consensus 73 ~~~~L~~l~l~~~~ 86 (140)
.++.|++|+++.|.
T Consensus 207 ~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 207 RLPKLKHLDLSYNC 220 (1096)
T ss_pred hcccccccccccch
Confidence 33333333333333
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=6.4e-07 Score=42.41 Aligned_cols=36 Identities=44% Similarity=0.616 Sum_probs=16.3
Q ss_pred CccEEEecCCcccccCChhccCCCCCcEEeccccccc
Q 032459 76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT 112 (140)
Q Consensus 76 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 112 (140)
+|+.|++++|+++ ..+..+..+++|+++++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555554 22333445555555555555444
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=1.7e-08 Score=59.11 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=47.0
Q ss_pred CCcccEEEccCCccccCCCcCCc-CCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEE
Q 032459 26 LSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104 (140)
Q Consensus 26 l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l 104 (140)
...|+..++++|++. ..|..|. .++...++++.+|.+. ..|..+..++.|+.+++..|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 345555666666665 3444332 3445666666666666 44555666666666666666655 334444445555555
Q ss_pred eccccccc
Q 032459 105 WLQNNFLT 112 (140)
Q Consensus 105 ~l~~~~~~ 112 (140)
+..+|.+.
T Consensus 129 ds~~na~~ 136 (177)
T KOG4579|consen 129 DSPENARA 136 (177)
T ss_pred cCCCCccc
Confidence 55555544
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.30 E-value=7.5e-07 Score=67.09 Aligned_cols=108 Identities=27% Similarity=0.339 Sum_probs=81.6
Q ss_pred CCCcccEEEccCCc--cccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCc
Q 032459 25 HLSNLESLFLKNNM--FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102 (140)
Q Consensus 25 ~l~~L~~L~l~~~~--l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~ 102 (140)
..++|+.|-+..|. +.......|..++.|++|++++|.-.+..|..++.+-+|++|+++++.+. ..|..++.+..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 35578888888875 44233334667888999999887655578888888888899999888887 7788888888888
Q ss_pred EEecccccccccCcccccCCCCCCeEEcCCC
Q 032459 103 MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 103 ~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 133 (140)
+|++..+......+.....+.+|++|.+..-
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeecc
Confidence 8888877655455666666888888887543
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.3e-09 Score=68.98 Aligned_cols=131 Identities=19% Similarity=0.162 Sum_probs=77.5
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc-ccccCcc-hhhccCCCccEE
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD-DFSGTIP-KEIGNVTKLIRL 80 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~-~~~~~~~~L~~l 80 (140)
+|+.++++...++-+.-..++..+.+|+.|.+.++++.+.+...+++...|+.++++.+ .++.... -.+..+..|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46677777776653322334466778888899999888877777888888999998876 3542222 234567788888
Q ss_pred EecCCcccccCChhcc-C-CCCCcEEeccccccc--c-cCcccccCCCCCCeEEcCCC
Q 032459 81 YLRGNQLQGEIPEELG-N-LAELEMLWLQNNFLT--R-AIPSSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~-~-~~~l~~l~l~~~~~~--~-~~~~~~~~~~~L~~l~l~~n 133 (140)
++++|.+....-..+. + -.+++.|+++|+.-. . .+.--...++++..||+++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 8888875422111111 1 144555555554311 1 11111234556666666554
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=2.5e-08 Score=72.38 Aligned_cols=107 Identities=34% Similarity=0.358 Sum_probs=59.7
Q ss_pred cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 103 (140)
+-++.++.|+|+.|+++ .+. .+..+++|+.||+++|.+. ..|..-..-..|+.|.+.+|.++ ....+.++.+|..
T Consensus 184 qll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~--tL~gie~LksL~~ 258 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT--TLRGIENLKSLYG 258 (1096)
T ss_pred HHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH--hhhhHHhhhhhhc
Confidence 34566666677777666 232 4556667777777777665 33333222334666666666654 1233445566666
Q ss_pred EecccccccccCc-ccccCCCCCCeEEcCCCcc
Q 032459 104 LWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 104 l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~ 135 (140)
|+++.|-+.+.-. ..++.+..|+.|.+.+|++
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6666666543211 2334455666666666654
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=2.2e-07 Score=64.79 Aligned_cols=106 Identities=25% Similarity=0.229 Sum_probs=77.4
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+.+|+.+++.+|.+. .+...+ ..+++|++|++++|.|+... .+..++.|+.|++.+|.+.. ...+..+..++.+
T Consensus 94 ~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIE-KIENLL-SSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKSLKLL 167 (414)
T ss_pred ccceeeeeccccchh-hcccch-hhhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchhhhcc
Confidence 357888889998875 443323 66899999999999998433 34577779999999999863 3445557889999
Q ss_pred EecCCcccccCChhccCCCCCcEEeccccccc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLT 112 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 112 (140)
++++|++....+.....+.+++.+.+.+|.+.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 99999887443310456777888888888765
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.18 E-value=1.1e-06 Score=64.63 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=83.4
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccC-cchhhccCCCccE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT-IPKEIGNVTKLIR 79 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~ 79 (140)
||+|+.|.+.+-.+...--..++.++|+|..||+++++++. + .+++.+.+|+.|.+.+=.+... .-..+..+.+|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 68999999999877534334566899999999999999983 3 6678899999998887776531 2245678999999
Q ss_pred EEecCCcccccC--Chh----ccCCCCCcEEeccccccccc
Q 032459 80 LYLRGNQLQGEI--PEE----LGNLAELEMLWLQNNFLTRA 114 (140)
Q Consensus 80 l~l~~~~~~~~~--~~~----~~~~~~l~~l~l~~~~~~~~ 114 (140)
||++..+..... ... -..++.|+.+|.+++.+.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 999987654221 111 11468999999999887654
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.09 E-value=1.6e-06 Score=55.77 Aligned_cols=106 Identities=25% Similarity=0.236 Sum_probs=68.3
Q ss_pred cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc--ccccCcchhhccCCCccEEEecCCccccc-CChhccCCCC
Q 032459 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD--DFSGTIPKEIGNVTKLIRLYLRGNQLQGE-IPEELGNLAE 100 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~ 100 (140)
..+..|+.+++.+.+++ -...+..+++|+.|.++.| ++.+..+.....+++|+++.++.|+++.. ....+..+.+
T Consensus 40 d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 55667777777777776 2234567788888888888 55544444444558888888888888731 1123345667
Q ss_pred CcEEecccccccccCc---ccccCCCCCCeEEcC
Q 032459 101 LEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLS 131 (140)
Q Consensus 101 l~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~ 131 (140)
|..+++..|..+...- ..+..+++|..++-.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 7788887777664211 345556777766543
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.3e-07 Score=61.06 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=71.4
Q ss_pred CceEEEccCCeecccCC-cccccCCCcccEEEccCCccccCCCc-CCcC-CCCCCEEEeeccccc--cCcchh-hccCCC
Q 032459 3 SLLSIRFTNNTLFGELP-PNFCNHLSNLESLFLKNNMFHGKIPS-TLSN-CKRLRNISLSLDDFS--GTIPKE-IGNVTK 76 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~-~~~L~~l~l~~~~~~--~~~~~~-~~~~~~ 76 (140)
+|+.++++.|.-.++.. ..++.+++.|++|+++.|.+...... .+.+ -++++.|++++++-. ...-+. ..++++
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence 34455555543222211 22334555666666666554421111 1111 245566666655432 111112 235788
Q ss_pred ccEEEecCCc-ccccCChhccCCCCCcEEecccccccccCcc---cccCCCCCCeEEcCCC
Q 032459 77 LIRLYLRGNQ-LQGEIPEELGNLAELEMLWLQNNFLTRAIPS---SIFNLSSLSNLDLSVN 133 (140)
Q Consensus 77 L~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l~~n 133 (140)
+.+|+++++- ++.....++..++.|+++.+++|.- ..|. .+...|+|.+|++.++
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 8899998874 4544456677888899999988864 3343 3466788999988776
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.98 E-value=5.9e-05 Score=43.94 Aligned_cols=108 Identities=21% Similarity=0.271 Sum_probs=40.3
Q ss_pred CcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCC
Q 032459 19 PPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL 98 (140)
Q Consensus 19 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 98 (140)
+...|..+.+|+.+.+.. .+.......|..+..++.+.+..+ +.......+..++.++.+.+.+ .+.......+..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 334444455555555553 333333444555555666555543 3323334444554555555543 2221222334445
Q ss_pred CCCcEEecccccccccCcccccCCCCCCeEEcC
Q 032459 99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS 131 (140)
Q Consensus 99 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 131 (140)
++++.+.+..+ +.......+.+. +++.+.+.
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555555443 322223334443 55555544
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.94 E-value=7.5e-05 Score=43.50 Aligned_cols=118 Identities=22% Similarity=0.302 Sum_probs=63.5
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.+.+... + ..+....|..++.++.+.+.++ +.......|..+..++.+.+.. .+.......+..+..++.+.
T Consensus 12 ~~l~~i~~~~~-~-~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPNT-I-KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECCC-e-eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 46788887753 3 3677777788889999999885 6645556777887899999976 44434456777789999999
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCC
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS 126 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 126 (140)
+..+ +.......+... .++.+.+.. .++......|.++++|+
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9765 443444556665 888888765 34434456666666553
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=2.3e-05 Score=51.99 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=46.2
Q ss_pred CCceEEEccCCeeccc-CCcccccCCCcccEEEccCCccccCCCcCC-cCCCCCCEEEeeccccccCc-chhhccCCCcc
Q 032459 2 SSLLSIRFTNNTLFGE-LPPNFCNHLSNLESLFLKNNMFHGKIPSTL-SNCKRLRNISLSLDDFSGTI-PKEIGNVTKLI 78 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~ 78 (140)
++++++++.+|.+.+- -...++..+|.|+.|+++.|++...+ +.+ ....+|+++.+.++.+.+.. ...+..++.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3456677777766421 11224466777777777777776222 222 34556777777776665322 22334455566
Q ss_pred EEEecCC
Q 032459 79 RLYLRGN 85 (140)
Q Consensus 79 ~l~l~~~ 85 (140)
.++++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 6655555
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00033 Score=48.78 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=33.0
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~ 61 (140)
++++.|++++|.+ ..+| .+ .+.|++|.+.+|.--..+|..+ ..+|+.|.+++|
T Consensus 52 ~~l~~L~Is~c~L-~sLP-~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDI-ESLP-VL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCC-cccC-CC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4677888888866 3666 22 3468888887744323455433 246777777776
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.51 E-value=7.5e-05 Score=48.29 Aligned_cols=92 Identities=20% Similarity=0.197 Sum_probs=64.5
Q ss_pred CCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCc--ccccCChhccCCCCCcEEeccccccccc-Ccccc
Q 032459 43 IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ--LQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSI 119 (140)
Q Consensus 43 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~ 119 (140)
+......+..|+.+.+.+..+++ -..+..+++|+.|.++.|. +.+..+--...+++++++++++|++... ....+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 44444566778888888777763 3456678899999999994 4433332233559999999999998731 11345
Q ss_pred cCCCCCCeEEcCCCccc
Q 032459 120 FNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 120 ~~~~~L~~l~l~~n~~~ 136 (140)
..+.+|..|++..|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 66778899999988654
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=1.4e-05 Score=52.96 Aligned_cols=88 Identities=23% Similarity=0.303 Sum_probs=56.3
Q ss_pred cCCCcccEEEccCCcccc--CCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCC-hhccCCCC
Q 032459 24 NHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIP-EELGNLAE 100 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~ 100 (140)
.....++++|+.+|.|++ .+..-+..+|.+++|+++.|.+.+..........++..+-+.+..+.+... ..+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345678888888888873 333334567888888888888764332222355678888887777655433 33445666
Q ss_pred CcEEecccccc
Q 032459 101 LEMLWLQNNFL 111 (140)
Q Consensus 101 l~~l~l~~~~~ 111 (140)
++.++++.|.+
T Consensus 148 vtelHmS~N~~ 158 (418)
T KOG2982|consen 148 VTELHMSDNSL 158 (418)
T ss_pred hhhhhhccchh
Confidence 67777766643
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=1.8e-06 Score=56.49 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=41.9
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcc-hhhccCCCccEEE
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIP-KEIGNVTKLIRLY 81 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~ 81 (140)
+.++|++.+|.+. ++ .++..++.|++|.|+-|.|+.. ..+..++.|+.|++..|.|.+... ..+..+++|..|=
T Consensus 20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455666666553 22 2344566666666666666521 223455666666666666652211 2344455555555
Q ss_pred ecCCccc
Q 032459 82 LRGNQLQ 88 (140)
Q Consensus 82 l~~~~~~ 88 (140)
+..|.--
T Consensus 95 L~ENPCc 101 (388)
T KOG2123|consen 95 LDENPCC 101 (388)
T ss_pred hccCCcc
Confidence 5554443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=2.9e-06 Score=55.55 Aligned_cols=102 Identities=27% Similarity=0.295 Sum_probs=76.6
Q ss_pred cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccC-ChhccCCCCCc
Q 032459 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEI-PEELGNLAELE 102 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~l~ 102 (140)
+.+.+.+.|++-+|+++++.. ...++.|++|.++-|+|++ -..+..+.+|+.+.+..|.|.+.. ...+.++++|+
T Consensus 16 sdl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred hHHHHhhhhcccCCCccHHHH--HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 346678888999999885432 2368999999999999974 355678889999999999886432 25567889999
Q ss_pred EEecccccccccCcc-----cccCCCCCCeEE
Q 032459 103 MLWLQNNFLTRAIPS-----SIFNLSSLSNLD 129 (140)
Q Consensus 103 ~l~l~~~~~~~~~~~-----~~~~~~~L~~l~ 129 (140)
.|.+..|+-.+..+. ++..+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999988765443 345667777665
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.10 E-value=0.0017 Score=42.95 Aligned_cols=38 Identities=29% Similarity=0.296 Sum_probs=21.5
Q ss_pred CCCcEEecccccccccCcc-----cccCCCCCCeEEcCCCccc
Q 032459 99 AELEMLWLQNNFLTRAIPS-----SIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 99 ~~l~~l~l~~~~~~~~~~~-----~~~~~~~L~~l~l~~n~~~ 136 (140)
..++.+.+..|.+...... .++-+.+|+.||+++|-++
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 3455555555555432111 2234578888888888653
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.09 E-value=0.0024 Score=44.65 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=33.6
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCC-ccccCCCcCCcCCCCCCEEEeeccc
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNN-MFHGKIPSTLSNCKRLRNISLSLDD 62 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~l~l~~~~ 62 (140)
+|+.|.+++|.-...+|..+ .+.|+.|++.+| .+. .+|. .|+.|++..+.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~ 123 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSA 123 (426)
T ss_pred CCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------ccceEEeCCCC
Confidence 68899999876656666544 358899999988 444 4443 35566665443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.65 E-value=0.0011 Score=26.29 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=4.5
Q ss_pred ceEEEccCCee
Q 032459 4 LLSIRFTNNTL 14 (140)
Q Consensus 4 L~~L~l~~~~~ 14 (140)
|++|++++|.+
T Consensus 2 L~~Ldls~n~l 12 (22)
T PF00560_consen 2 LEYLDLSGNNL 12 (22)
T ss_dssp ESEEEETSSEE
T ss_pred ccEEECCCCcC
Confidence 33444444433
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.00037 Score=43.74 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=40.9
Q ss_pred cccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc-cCcchhhc-cCCCccEEEecCC-cccccCChhccCCCCCcEE
Q 032459 28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS-GTIPKEIG-NVTKLIRLYLRGN-QLQGEIPEELGNLAELEML 104 (140)
Q Consensus 28 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~-~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~l 104 (140)
.++.++-+++.|..+....+..++.++.|.+.++..- ...-+.++ -.++|+.|+++.| +|++.....+.++++|+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4555665665555444445555666666666655432 11111122 2345666666655 3443333444455666665
Q ss_pred ecccc
Q 032459 105 WLQNN 109 (140)
Q Consensus 105 ~l~~~ 109 (140)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 55443
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.83 E-value=0.0063 Score=22.42 Aligned_cols=9 Identities=44% Similarity=0.423 Sum_probs=3.1
Q ss_pred cEEEccCCc
Q 032459 30 ESLFLKNNM 38 (140)
Q Consensus 30 ~~L~l~~~~ 38 (140)
++|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.87 E-value=0.022 Score=23.25 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=9.3
Q ss_pred CCceEEEccCCeecccCCccc
Q 032459 2 SSLLSIRFTNNTLFGELPPNF 22 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~ 22 (140)
++|+.|++.+|.+. .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 44555555555442 444433
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.87 E-value=0.022 Score=23.25 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=9.3
Q ss_pred CCceEEEccCCeecccCCccc
Q 032459 2 SSLLSIRFTNNTLFGELPPNF 22 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~ 22 (140)
++|+.|++.+|.+. .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 44555555555442 444433
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.60 E-value=0.005 Score=43.62 Aligned_cols=12 Identities=42% Similarity=0.421 Sum_probs=5.9
Q ss_pred CCCcccEEEccC
Q 032459 25 HLSNLESLFLKN 36 (140)
Q Consensus 25 ~l~~L~~L~l~~ 36 (140)
.++.|++|++.+
T Consensus 212 ~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 212 KCPNLEELDLSG 223 (482)
T ss_pred hCchhheecccC
Confidence 344555555544
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.0033 Score=39.60 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=63.0
Q ss_pred CCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcc-cccCChhcc-CCCCCcEEeccccc-ccccCcccc
Q 032459 43 IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQL-QGEIPEELG-NLAELEMLWLQNNF-LTRAIPSSI 119 (140)
Q Consensus 43 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~-~~~~l~~l~l~~~~-~~~~~~~~~ 119 (140)
.|.....-..++.++.+++.+.+..-..+..+..++.+.+.++.- .+...+.+. -.++|+.|++++|+ ||+.....+
T Consensus 93 lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 93 LPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred CCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH
Confidence 344333445688888888888766667778888888888888763 223233333 34889999999887 776656667
Q ss_pred cCCCCCCeEEcCC
Q 032459 120 FNLSSLSNLDLSV 132 (140)
Q Consensus 120 ~~~~~L~~l~l~~ 132 (140)
..+++|+.|.+.+
T Consensus 173 ~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 173 LKLKNLRRLHLYD 185 (221)
T ss_pred HHhhhhHHHHhcC
Confidence 7788888777764
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.28 E-value=0.014 Score=41.34 Aligned_cols=60 Identities=33% Similarity=0.184 Sum_probs=28.0
Q ss_pred CCCccEEEecCCc-ccccCChhcc-CCCCCcEEeccccc-ccccCc-ccccCCCCCCeEEcCCC
Q 032459 74 VTKLIRLYLRGNQ-LQGEIPEELG-NLAELEMLWLQNNF-LTRAIP-SSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 74 ~~~L~~l~l~~~~-~~~~~~~~~~-~~~~l~~l~l~~~~-~~~~~~-~~~~~~~~L~~l~l~~n 133 (140)
+.+++.++++++. +++.....+. .+++|+.+.+.++. +++..- .....++.|++|+++.|
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 3455555555554 3433333333 24556666555554 333222 22234555666666554
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.15 E-value=0.012 Score=41.05 Aligned_cols=110 Identities=25% Similarity=0.240 Sum_probs=55.1
Q ss_pred cCCCcccEEEccCCc-cccCCCcCC-cCCCCCCEEEeeccccccC--cchhhccCCCccEEEecCCcc-cccCChhcc--
Q 032459 24 NHLSNLESLFLKNNM-FHGKIPSTL-SNCKRLRNISLSLDDFSGT--IPKEIGNVTKLIRLYLRGNQL-QGEIPEELG-- 96 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~-l~~~~~~~~-~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~-- 96 (140)
+..++|+.+.+.+|+ +++.-...+ .+++.|+.+++..+..... ..+.-.+++.++.+.++.+.. ++.....+.
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 455677777776665 222111112 2456666666666543311 122223456677777765542 222111111
Q ss_pred --CCCCCcEEeccccccc-ccCcccccCCCCCCeEEcCCC
Q 032459 97 --NLAELEMLWLQNNFLT-RAIPSSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 97 --~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~n 133 (140)
....++.+.+++++.+ +.....+..+++|+.+++-++
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 3355666777776643 223344455667777666554
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.09 E-value=0.028 Score=22.50 Aligned_cols=15 Identities=47% Similarity=0.636 Sum_probs=8.6
Q ss_pred CCCCeEEcCCCccce
Q 032459 123 SSLSNLDLSVNNLTG 137 (140)
Q Consensus 123 ~~L~~l~l~~n~~~~ 137 (140)
++|+.|++++|.+++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 466777777776654
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.75 E-value=0.12 Score=21.60 Aligned_cols=14 Identities=57% Similarity=0.655 Sum_probs=9.2
Q ss_pred CCCCeEEcCCCccc
Q 032459 123 SSLSNLDLSVNNLT 136 (140)
Q Consensus 123 ~~L~~l~l~~n~~~ 136 (140)
++|++|++++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35677777777664
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.05 E-value=0.0041 Score=40.32 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=59.7
Q ss_pred cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 103 (140)
..+.+.+.||++.|++- ..-..+..++.+..++++.|.+. ..|..+.....+..++...|... ..|..+...+.+++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 55678888888888765 45555666777778888888776 56666666666666666666655 55666677777777
Q ss_pred Eeccccccc
Q 032459 104 LWLQNNFLT 112 (140)
Q Consensus 104 l~l~~~~~~ 112 (140)
+++-++.++
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777777665
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.33 E-value=0.44 Score=19.61 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=8.5
Q ss_pred CcccEEEccCCccc
Q 032459 27 SNLESLFLKNNMFH 40 (140)
Q Consensus 27 ~~L~~L~l~~~~l~ 40 (140)
.+|++|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.07 E-value=0.34 Score=34.27 Aligned_cols=109 Identities=23% Similarity=0.217 Sum_probs=65.1
Q ss_pred CCceEEEccCCeecccCC-cccccCCCcccEEEccCCccc--cCCCcCCcCCCCCCEEEeecccc-ccCc----chhhcc
Q 032459 2 SSLLSIRFTNNTLFGELP-PNFCNHLSNLESLFLKNNMFH--GKIPSTLSNCKRLRNISLSLDDF-SGTI----PKEIGN 73 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~l~l~~~~~-~~~~----~~~~~~ 73 (140)
++|+.+-+..|...+..- ..+-.+++.|+.+++..+... +.+...-.+++.|+.+.++.+.. +... ...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 567788888876432221 223356778999998887654 12223334678889888887643 2111 111223
Q ss_pred CCCccEEEecCCccc-ccCChhccCCCCCcEEeccccc
Q 032459 74 VTKLIRLYLRGNQLQ-GEIPEELGNLAELEMLWLQNNF 110 (140)
Q Consensus 74 ~~~L~~l~l~~~~~~-~~~~~~~~~~~~l~~l~l~~~~ 110 (140)
+..++.+.+.+++.. +...+.+..+++|+.+++-++.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 456777888877643 3334555667788887776654
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.68 E-value=0.0014 Score=46.84 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=20.3
Q ss_pred CCCcEEecccccccccC----cccccCCCCCCeEEcCCCccc
Q 032459 99 AELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 99 ~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~ 136 (140)
..++++++..|.+++.. .+.+...+.++++.++.|++.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44566666666665422 233344456666666666554
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.89 E-value=0.018 Score=37.47 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=64.7
Q ss_pred CCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCC
Q 032459 46 TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL 125 (140)
Q Consensus 46 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 125 (140)
.+......+.+|++.|+.. ..-..++-+..+..++++.|.+. ..|..+.....+..++...|... ..|..++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4556677888888888776 44556667778888999988887 66766665555555566666554 567888889999
Q ss_pred CeEEcCCCccce
Q 032459 126 SNLDLSVNNLTG 137 (140)
Q Consensus 126 ~~l~l~~n~~~~ 137 (140)
+.+++-.|++..
T Consensus 114 k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 114 KKNEQKKTEFFR 125 (326)
T ss_pred chhhhccCcchH
Confidence 999988887643
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.06 E-value=0.9 Score=18.35 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=7.4
Q ss_pred CCCceEEEccCCe
Q 032459 1 MSSLLSIRFTNNT 13 (140)
Q Consensus 1 l~~L~~L~l~~~~ 13 (140)
+++|+.|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3556666666654
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.11 E-value=1.8 Score=17.86 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=6.7
Q ss_pred cccEEEccCCccc
Q 032459 28 NLESLFLKNNMFH 40 (140)
Q Consensus 28 ~L~~L~l~~~~l~ 40 (140)
.|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.73 E-value=2.9 Score=30.88 Aligned_cols=65 Identities=26% Similarity=0.133 Sum_probs=32.2
Q ss_pred CCCCCCEEEeeccccccCcc--hhhccCCCccEEEecCCcccccCChhcc--CCCCCcEEecccccccc
Q 032459 49 NCKRLRNISLSLDDFSGTIP--KEIGNVTKLIRLYLRGNQLQGEIPEELG--NLAELEMLWLQNNFLTR 113 (140)
Q Consensus 49 ~~~~L~~l~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~ 113 (140)
+.+.+..+.+++|++..... ..-...+++..|++++|...-....++. ....|+.+-+.||+++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34566666677776642110 1112245677777777622111112222 23446667777777654
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.31 E-value=5.7 Score=29.45 Aligned_cols=62 Identities=27% Similarity=0.323 Sum_probs=27.5
Q ss_pred CCCcccEEEccCCccccC--CCcCCcCCCCCCEEEeecc--ccccCcchhhc--cCCCccEEEecCCccc
Q 032459 25 HLSNLESLFLKNNMFHGK--IPSTLSNCKRLRNISLSLD--DFSGTIPKEIG--NVTKLIRLYLRGNQLQ 88 (140)
Q Consensus 25 ~l~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~--~~~~L~~l~l~~~~~~ 88 (140)
..+.+..+.+++|.+... +...-...+++++|+|++| .+.. ...+. ....|+++-+.+|++-
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 344555555666655410 0011123466666666666 2221 11111 2234555666666543
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=49.77 E-value=11 Score=33.62 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=27.2
Q ss_pred EccCCeecccCCcccccCCCcccEEEccCCccc
Q 032459 8 RFTNNTLFGELPPNFCNHLSNLESLFLKNNMFH 40 (140)
Q Consensus 8 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 40 (140)
+|++|.+ ..++...|..+++|++|+|.+|.+.
T Consensus 1 DLSnN~L-stLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKI-STIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcC-CccChHHhccCCCceEEEeeCCccc
Confidence 4778888 4888888899999999999998765
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.97 E-value=24 Score=31.73 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=25.7
Q ss_pred EccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459 33 FLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64 (140)
Q Consensus 33 ~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~ 64 (140)
||++|.|+...+..|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 47888888655667778899999999988774
No 89
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=25.26 E-value=29 Score=14.26 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=10.2
Q ss_pred cccCCCCCCeEEcCC
Q 032459 118 SIFNLSSLSNLDLSV 132 (140)
Q Consensus 118 ~~~~~~~L~~l~l~~ 132 (140)
++..+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 355678888887653
No 90
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=21.82 E-value=47 Score=13.35 Aligned_cols=11 Identities=9% Similarity=0.289 Sum_probs=5.1
Q ss_pred ceEEEccCCee
Q 032459 4 LLSIRFTNNTL 14 (140)
Q Consensus 4 L~~L~l~~~~~ 14 (140)
|+.|.+....+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 44454444443
Done!