Query 032459
Match_columns 140
No_of_seqs 113 out of 1826
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 23:40:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v70_A SLIT-2, SLIT homolog 2 99.9 7.5E-22 2.6E-26 124.8 12.8 136 3-138 33-168 (220)
2 3rgz_A Protein brassinosteroid 99.9 7.6E-22 2.6E-26 143.8 13.9 91 50-140 631-721 (768)
3 3m19_A Variable lymphocyte rec 99.9 1.9E-21 6.4E-26 125.1 14.0 136 2-138 59-194 (251)
4 3rfs_A Internalin B, repeat mo 99.9 2.4E-21 8.2E-26 126.0 14.3 138 1-139 84-221 (272)
5 2o6s_A Variable lymphocyte rec 99.9 4.6E-21 1.6E-25 120.1 14.3 138 2-140 28-165 (208)
6 2v9t_B SLIT homolog 2 protein 99.9 2.1E-21 7.2E-26 122.8 12.7 135 2-137 32-166 (220)
7 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-21 5.1E-26 129.3 12.3 138 2-140 50-191 (313)
8 3rgz_A Protein brassinosteroid 99.9 2.6E-21 8.9E-26 141.0 14.4 138 2-140 418-555 (768)
9 4fcg_A Uncharacterized protein 99.9 1.5E-21 5.3E-26 130.0 11.3 137 2-140 150-294 (328)
10 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-21 4.8E-26 129.4 10.9 110 2-112 76-187 (313)
11 3m19_A Variable lymphocyte rec 99.9 1.4E-20 4.6E-25 121.1 14.0 136 2-138 35-170 (251)
12 3e6j_A Variable lymphocyte rec 99.9 1.4E-20 4.8E-25 119.6 13.5 135 2-138 40-174 (229)
13 2o6q_A Variable lymphocyte rec 99.9 2.9E-20 1E-24 120.7 14.3 133 2-135 61-193 (270)
14 3v47_A TOLL-like receptor 5B a 99.9 1.2E-20 4.2E-25 130.1 12.8 138 2-140 275-412 (455)
15 1ozn_A Reticulon 4 receptor; N 99.9 2E-20 6.7E-25 122.3 12.6 112 24-135 102-213 (285)
16 4fcg_A Uncharacterized protein 99.8 2.1E-20 7.1E-25 124.5 12.5 134 3-140 128-270 (328)
17 2z66_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 122.3 13.3 136 2-137 101-237 (306)
18 3rfs_A Internalin B, repeat mo 99.8 5.4E-20 1.8E-24 119.6 14.0 136 1-139 62-197 (272)
19 2o6q_A Variable lymphocyte rec 99.8 5.9E-20 2E-24 119.3 14.1 136 1-137 84-219 (270)
20 1ozn_A Reticulon 4 receptor; N 99.8 5.4E-20 1.9E-24 120.2 13.8 136 2-138 56-192 (285)
21 4g8a_A TOLL-like receptor 4; l 99.8 4.3E-20 1.5E-24 131.5 12.6 136 2-138 52-188 (635)
22 1w8a_A SLIT protein; signaling 99.8 7.5E-20 2.6E-24 113.4 11.9 131 5-139 11-142 (192)
23 2z66_A Variable lymphocyte rec 99.8 7.6E-20 2.6E-24 120.5 12.6 137 1-138 125-263 (306)
24 2ell_A Acidic leucine-rich nuc 99.8 7.8E-20 2.7E-24 111.0 11.4 133 2-137 24-161 (168)
25 2z63_A TOLL-like receptor 4, v 99.8 8.7E-20 3E-24 128.8 13.0 140 1-140 395-535 (570)
26 2z62_A TOLL-like receptor 4, v 99.8 1.8E-19 6E-24 117.3 12.4 136 2-138 28-164 (276)
27 4ezg_A Putative uncharacterize 99.8 3.1E-19 1.1E-23 111.0 12.3 129 2-137 66-195 (197)
28 3vq2_A TLR4, TOLL-like recepto 99.8 1.3E-19 4.4E-24 128.9 11.8 135 2-136 399-534 (606)
29 1p9a_G Platelet glycoprotein I 99.8 4.6E-19 1.6E-23 116.2 13.4 109 26-135 76-184 (290)
30 2je0_A Acidic leucine-rich nuc 99.8 1.3E-19 4.5E-24 108.0 9.4 128 2-132 17-149 (149)
31 3o6n_A APL1; leucine-rich repe 99.8 2.3E-19 7.8E-24 121.8 11.8 135 2-137 45-179 (390)
32 2xot_A Amphoterin-induced prot 99.8 2.7E-19 9.3E-24 120.5 12.0 135 2-137 39-177 (361)
33 2o6s_A Variable lymphocyte rec 99.8 6.7E-20 2.3E-24 114.8 8.4 132 1-140 51-182 (208)
34 3vq2_A TLR4, TOLL-like recepto 99.8 4.8E-19 1.6E-23 126.0 13.5 136 2-138 32-168 (606)
35 2wfh_A SLIT homolog 2 protein 99.8 7.8E-19 2.7E-23 108.9 12.6 128 5-137 13-140 (193)
36 1p9a_G Platelet glycoprotein I 99.8 1.2E-18 3.9E-23 114.4 13.9 133 1-136 76-208 (290)
37 2o6r_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 106.8 12.5 132 4-139 9-140 (177)
38 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4E-23 110.2 12.8 130 5-138 14-143 (220)
39 4eco_A Uncharacterized protein 99.8 1.9E-19 6.6E-24 128.9 9.8 121 18-140 198-347 (636)
40 1wwl_A Monocyte differentiatio 99.8 8.6E-20 2.9E-24 120.8 7.4 136 1-137 94-242 (312)
41 2z62_A TOLL-like receptor 4, v 99.8 7E-19 2.4E-23 114.4 11.6 135 1-136 51-190 (276)
42 3oja_B Anopheles plasmodium-re 99.8 5.5E-19 1.9E-23 125.8 11.7 135 2-137 51-185 (597)
43 4ezg_A Putative uncharacterize 99.8 6.5E-19 2.2E-23 109.5 10.6 130 1-137 43-173 (197)
44 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-18 5.4E-23 109.6 12.5 131 5-139 14-145 (220)
45 2id5_A Lingo-1, leucine rich r 99.8 8.5E-19 2.9E-23 121.7 11.9 132 3-135 33-164 (477)
46 3t6q_A CD180 antigen; protein- 99.8 1.7E-18 5.7E-23 123.2 13.5 133 3-136 401-536 (606)
47 2id5_A Lingo-1, leucine rich r 99.8 9.3E-19 3.2E-23 121.5 11.8 134 1-135 55-188 (477)
48 3v47_A TOLL-like receptor 5B a 99.8 9.1E-19 3.1E-23 120.8 11.3 137 2-139 30-170 (455)
49 3zyj_A Leucine-rich repeat-con 99.8 1.3E-18 4.3E-23 119.9 11.6 131 3-135 161-291 (440)
50 4eco_A Uncharacterized protein 99.8 2.9E-19 1E-23 128.0 8.5 133 1-136 205-366 (636)
51 2z80_A TOLL-like receptor 2, v 99.8 8.6E-19 2.9E-23 117.6 10.1 136 2-138 52-189 (353)
52 3t6q_A CD180 antigen; protein- 99.8 2.3E-18 7.7E-23 122.5 12.0 134 3-137 34-167 (606)
53 2z63_A TOLL-like receptor 4, v 99.8 3.1E-18 1.1E-22 120.9 12.5 136 2-138 28-164 (570)
54 3e6j_A Variable lymphocyte rec 99.8 1E-17 3.4E-22 106.5 13.6 128 5-137 22-149 (229)
55 2xwt_C Thyrotropin receptor; s 99.8 1.9E-18 6.6E-23 110.3 10.2 131 3-136 32-169 (239)
56 2z81_A CD282 antigen, TOLL-lik 99.8 1.3E-18 4.6E-23 122.4 10.2 138 2-140 26-165 (549)
57 1ziw_A TOLL-like receptor 3; i 99.8 1.9E-18 6.6E-23 124.3 11.0 135 2-137 25-159 (680)
58 3zyi_A Leucine-rich repeat-con 99.8 3.2E-18 1.1E-22 118.2 11.7 116 19-136 188-303 (452)
59 2xot_A Amphoterin-induced prot 99.8 1.6E-18 5.6E-23 116.7 9.1 135 1-136 63-202 (361)
60 3j0a_A TOLL-like receptor 5; m 99.8 3.4E-18 1.2E-22 125.8 11.3 135 2-137 24-162 (844)
61 3j0a_A TOLL-like receptor 5; m 99.8 4.7E-18 1.6E-22 125.1 11.9 139 1-139 47-190 (844)
62 3oja_B Anopheles plasmodium-re 99.8 1.5E-17 5.1E-22 118.5 14.1 112 1-113 74-185 (597)
63 3o6n_A APL1; leucine-rich repe 99.8 1.4E-17 5E-22 113.0 13.4 131 1-135 68-198 (390)
64 3zyi_A Leucine-rich repeat-con 99.8 8.2E-18 2.8E-22 116.2 12.3 134 2-138 75-233 (452)
65 3zyj_A Leucine-rich repeat-con 99.8 1.3E-17 4.3E-22 114.9 13.3 62 2-64 88-149 (440)
66 4ecn_A Leucine-rich repeat pro 99.8 2.3E-18 7.9E-23 126.7 8.5 133 1-136 447-608 (876)
67 2z80_A TOLL-like receptor 2, v 99.8 2.4E-18 8.2E-23 115.5 7.5 134 1-135 75-210 (353)
68 1xku_A Decorin; proteoglycan, 99.8 3.2E-17 1.1E-21 109.1 12.8 131 2-136 145-276 (330)
69 1wwl_A Monocyte differentiatio 99.7 3.9E-18 1.3E-22 112.8 7.8 134 1-136 120-266 (312)
70 1a9n_A U2A', U2A'; complex (nu 99.7 1E-17 3.4E-22 102.4 9.1 130 1-136 18-153 (176)
71 1ziw_A TOLL-like receptor 3; i 99.7 1E-17 3.5E-22 120.6 10.6 138 1-139 48-187 (680)
72 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-17 4.1E-22 117.0 10.4 134 2-137 324-482 (520)
73 2xwt_C Thyrotropin receptor; s 99.7 1.3E-17 4.4E-22 106.5 9.5 135 1-136 54-218 (239)
74 4g8a_A TOLL-like receptor 4; l 99.7 5.8E-17 2E-21 115.4 13.4 134 2-136 445-580 (635)
75 1w8a_A SLIT protein; signaling 99.7 2.4E-17 8.3E-22 102.1 10.0 113 2-114 29-141 (192)
76 1xku_A Decorin; proteoglycan, 99.7 6E-17 2.1E-21 107.7 12.5 130 2-135 52-183 (330)
77 1h6t_A Internalin B; cell adhe 99.7 7.8E-17 2.7E-21 105.7 12.3 124 2-136 68-191 (291)
78 4ecn_A Leucine-rich repeat pro 99.7 6.1E-17 2.1E-21 119.2 12.9 133 3-140 674-822 (876)
79 2ft3_A Biglycan; proteoglycan, 99.7 6.1E-17 2.1E-21 107.8 11.3 133 3-137 124-278 (332)
80 2z7x_B TOLL-like receptor 1, v 99.7 3.9E-17 1.3E-21 114.4 10.8 110 1-114 373-483 (520)
81 4fmz_A Internalin; leucine ric 99.7 4.8E-17 1.7E-21 108.7 10.8 126 2-136 221-346 (347)
82 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.4E-17 1.5E-21 115.2 11.1 134 2-137 353-511 (562)
83 2ft3_A Biglycan; proteoglycan, 99.7 1.3E-16 4.5E-21 106.2 11.7 105 3-111 55-159 (332)
84 4glp_A Monocyte differentiatio 99.7 1.5E-17 5.1E-22 109.9 7.0 135 2-136 91-264 (310)
85 2je0_A Acidic leucine-rich nuc 99.7 6E-17 2.1E-21 96.4 8.9 112 25-138 15-128 (149)
86 4fmz_A Internalin; leucine ric 99.7 1.3E-16 4.5E-21 106.6 11.3 110 24-139 218-327 (347)
87 1h6u_A Internalin H; cell adhe 99.7 1.8E-16 6.1E-21 104.7 11.7 40 95-136 169-208 (308)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.1E-16 3.9E-21 113.2 11.4 106 3-112 53-159 (562)
89 3o53_A Protein LRIM1, AGAP0063 99.7 2.7E-17 9.4E-22 109.0 7.5 130 2-136 120-250 (317)
90 4glp_A Monocyte differentiatio 99.7 4.5E-17 1.5E-21 107.6 8.4 132 1-137 144-286 (310)
91 2z81_A CD282 antigen, TOLL-lik 99.7 2.6E-17 8.8E-22 115.9 7.7 136 1-137 49-210 (549)
92 3oja_A Leucine-rich immune mol 99.7 3.7E-17 1.3E-21 114.0 8.3 132 2-136 34-182 (487)
93 1xeu_A Internalin C; cellular 99.7 2.6E-16 9E-21 101.8 11.7 123 2-136 41-163 (263)
94 2ell_A Acidic leucine-rich nuc 99.7 2E-16 6.7E-21 95.9 10.4 112 25-138 22-135 (168)
95 3oja_A Leucine-rich immune mol 99.7 2.7E-17 9.3E-22 114.7 7.5 130 2-136 120-250 (487)
96 1h6u_A Internalin H; cell adhe 99.7 3.1E-16 1.1E-20 103.6 12.2 125 2-137 63-187 (308)
97 1m9s_A Internalin B; cell inva 99.7 3E-16 1E-20 111.9 12.9 124 1-135 64-187 (605)
98 1xeu_A Internalin C; cellular 99.7 2.6E-16 8.9E-21 101.9 11.5 126 1-138 62-187 (263)
99 2wfh_A SLIT homolog 2 protein 99.7 2.8E-16 9.6E-21 97.4 11.0 109 2-112 31-139 (193)
100 1h6t_A Internalin B; cell adhe 99.7 2.6E-16 9E-21 103.2 11.3 126 2-138 46-171 (291)
101 4b8c_D Glucose-repressible alc 99.7 3.4E-17 1.1E-21 118.9 7.6 119 18-140 215-333 (727)
102 2o6r_A Variable lymphocyte rec 99.7 5.5E-16 1.9E-20 94.7 11.4 112 2-114 28-139 (177)
103 1o6v_A Internalin A; bacterial 99.7 4.4E-16 1.5E-20 108.0 12.1 126 2-138 243-368 (466)
104 4b8c_D Glucose-repressible alc 99.7 5.4E-18 1.8E-22 123.0 1.9 114 1-119 223-336 (727)
105 3g39_A Variable lymphocyte rec 99.7 8.4E-16 2.9E-20 93.5 10.9 106 4-113 11-116 (170)
106 1m9s_A Internalin B; cell inva 99.7 1E-15 3.5E-20 109.1 12.4 127 1-138 86-212 (605)
107 1dce_A Protein (RAB geranylger 99.7 1E-15 3.5E-20 108.5 11.7 122 3-130 442-567 (567)
108 3o53_A Protein LRIM1, AGAP0063 99.7 4.8E-16 1.7E-20 103.0 8.9 110 25-137 118-228 (317)
109 2ast_B S-phase kinase-associat 99.7 9.6E-18 3.3E-22 111.7 0.5 83 2-85 93-178 (336)
110 2r9u_A Variable lymphocyte rec 99.7 2.6E-15 8.8E-20 91.7 11.2 104 5-112 15-118 (174)
111 1o6v_A Internalin A; bacterial 99.7 1.7E-15 5.7E-20 105.1 11.5 126 1-137 264-389 (466)
112 3g39_A Variable lymphocyte rec 99.6 2.9E-15 1E-19 91.1 10.8 107 28-137 10-116 (170)
113 2r9u_A Variable lymphocyte rec 99.6 7.1E-15 2.4E-19 89.7 10.9 106 29-137 14-119 (174)
114 1ds9_A Outer arm dynein; leuci 99.6 4.3E-18 1.5E-22 105.9 -3.8 109 24-137 45-154 (198)
115 1dce_A Protein (RAB geranylger 99.6 4.9E-15 1.7E-19 105.0 11.2 107 28-139 442-549 (567)
116 2ast_B S-phase kinase-associat 99.6 8.2E-17 2.8E-21 107.2 1.9 132 1-133 117-257 (336)
117 3goz_A Leucine-rich repeat-con 99.6 3E-16 1E-20 105.7 4.2 109 3-112 23-151 (362)
118 2ca6_A RAN GTPase-activating p 99.6 1.5E-16 5.2E-21 107.9 1.9 137 2-138 159-318 (386)
119 1ds9_A Outer arm dynein; leuci 99.6 2.8E-17 9.6E-22 102.2 -2.0 129 1-137 47-186 (198)
120 2ca6_A RAN GTPase-activating p 99.6 9.7E-17 3.3E-21 108.8 0.5 41 95-135 212-256 (386)
121 1a9n_A U2A', U2A'; complex (nu 99.6 1E-14 3.5E-19 89.0 9.1 109 24-137 16-127 (176)
122 3goz_A Leucine-rich repeat-con 99.6 5.4E-16 1.9E-20 104.4 3.8 112 3-114 52-182 (362)
123 3cvr_A Invasion plasmid antige 99.6 1.1E-14 3.6E-19 103.2 10.2 102 26-140 139-247 (571)
124 3bz5_A Internalin-J, INLJ; leu 99.6 5.7E-14 2E-18 97.3 12.2 117 2-133 42-158 (457)
125 3bz5_A Internalin-J, INLJ; leu 99.6 5.2E-14 1.8E-18 97.5 11.3 14 2-15 127-140 (457)
126 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.8E-18 98.1 12.6 54 3-64 60-113 (571)
127 1z7x_W Ribonuclease inhibitor; 99.5 1.8E-16 6E-21 109.5 -1.8 87 51-137 313-412 (461)
128 3un9_A NLR family member X1; l 99.5 7.6E-16 2.6E-20 104.2 -1.2 136 2-137 101-253 (372)
129 4ay9_X Follicle-stimulating ho 99.5 2.3E-13 7.7E-18 91.3 10.6 134 2-136 30-167 (350)
130 1z7x_W Ribonuclease inhibitor; 99.5 3.3E-15 1.1E-19 103.1 1.5 35 29-63 87-125 (461)
131 4ay9_X Follicle-stimulating ho 99.5 1.6E-13 5.4E-18 92.1 9.3 135 1-136 53-215 (350)
132 3g06_A SSPH2 (leucine-rich rep 99.5 3.6E-13 1.2E-17 96.4 11.6 80 51-139 221-300 (622)
133 1jl5_A Outer protein YOPM; leu 99.5 8E-13 2.7E-17 91.6 12.4 120 3-137 132-251 (454)
134 2ifg_A High affinity nerve gro 99.5 2.9E-13 9.8E-18 90.6 9.9 103 6-112 12-116 (347)
135 1jl5_A Outer protein YOPM; leu 99.4 3.2E-12 1.1E-16 88.6 12.2 117 3-136 92-208 (454)
136 2ifg_A High affinity nerve gro 99.4 9.7E-13 3.3E-17 88.0 9.4 103 31-136 12-116 (347)
137 3g06_A SSPH2 (leucine-rich rep 99.4 6.2E-12 2.1E-16 90.1 11.7 34 27-64 81-114 (622)
138 3un9_A NLR family member X1; l 99.3 4.5E-14 1.5E-18 95.5 -1.4 136 2-137 72-225 (372)
139 3sb4_A Hypothetical leucine ri 99.3 8.2E-12 2.8E-16 83.1 9.2 84 50-135 225-309 (329)
140 3ogk_B Coronatine-insensitive 99.3 2.3E-13 7.9E-18 96.6 -0.6 90 49-138 434-528 (592)
141 3sb4_A Hypothetical leucine ri 99.3 8.4E-11 2.9E-15 78.2 10.9 103 26-130 225-328 (329)
142 3ogk_B Coronatine-insensitive 99.2 1.9E-11 6.6E-16 86.7 4.4 34 49-83 218-251 (592)
143 2p1m_B Transport inhibitor res 99.2 9.9E-13 3.4E-17 93.3 -2.5 87 49-136 430-519 (594)
144 1io0_A Tropomodulin; LRR prote 99.0 2.5E-11 8.6E-16 74.6 0.6 114 24-137 33-165 (185)
145 2ra8_A Uncharacterized protein 99.0 2.8E-10 9.6E-15 76.7 5.0 63 74-136 251-320 (362)
146 2p1m_B Transport inhibitor res 99.0 5.1E-11 1.7E-15 84.6 0.7 133 1-133 65-221 (594)
147 4fdw_A Leucine rich hypothetic 98.9 1.6E-08 5.5E-13 69.1 10.1 88 44-134 264-356 (401)
148 3e4g_A ATP synthase subunit S, 98.8 2.4E-09 8.3E-14 65.0 4.0 84 27-110 61-150 (176)
149 2ra8_A Uncharacterized protein 98.8 6.6E-09 2.2E-13 70.1 6.5 133 1-137 138-293 (362)
150 4fdw_A Leucine rich hypothetic 98.8 3.9E-08 1.3E-12 67.2 10.3 64 69-133 265-333 (401)
151 3e4g_A ATP synthase subunit S, 98.8 2.6E-09 8.9E-14 64.8 3.3 88 50-137 60-154 (176)
152 1io0_A Tropomodulin; LRR prote 98.8 6.2E-10 2.1E-14 68.4 -0.8 111 2-113 36-165 (185)
153 3rw6_A Nuclear RNA export fact 98.7 5.1E-08 1.8E-12 63.1 5.8 80 49-129 168-257 (267)
154 3rw6_A Nuclear RNA export fact 98.6 9.1E-08 3.1E-12 61.9 4.9 80 24-105 167-257 (267)
155 4gt6_A Cell surface protein; l 98.4 5E-06 1.7E-10 56.6 9.8 110 20-133 258-367 (394)
156 4h09_A Hypothetical leucine ri 98.3 8.6E-06 2.9E-10 55.0 10.5 113 18-133 231-343 (379)
157 4gt6_A Cell surface protein; l 98.3 2.7E-05 9.1E-10 53.0 12.0 126 2-135 265-390 (394)
158 4h09_A Hypothetical leucine ri 98.1 2.5E-05 8.5E-10 52.8 9.3 117 2-123 240-356 (379)
159 4fs7_A Uncharacterized protein 98.1 3.4E-05 1.2E-09 52.5 9.6 85 46-133 292-376 (394)
160 1pgv_A TMD-1, tropomodulin TMD 98.0 1.8E-06 6.1E-11 53.4 1.7 112 24-135 38-169 (197)
161 4fs7_A Uncharacterized protein 98.0 5.5E-05 1.9E-09 51.4 8.6 106 18-128 288-393 (394)
162 3rfe_A Platelet glycoprotein I 97.5 0.00025 8.5E-09 40.9 5.7 55 7-64 13-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.5 7.3E-05 2.5E-09 46.2 2.9 87 47-133 37-136 (197)
164 3rfe_A Platelet glycoprotein I 97.3 0.00091 3.1E-08 38.5 5.8 57 54-112 11-68 (130)
165 2lz0_A Uncharacterized protein 84.5 3.3 0.00011 22.3 5.9 44 17-61 10-53 (100)
166 2lz0_A Uncharacterized protein 68.1 12 0.00041 20.1 6.2 49 36-85 5-53 (100)
No 1
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=7.5e-22 Score=124.83 Aligned_cols=136 Identities=21% Similarity=0.253 Sum_probs=122.1
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
.+++|++++|.+.+..+...+..+++|+.|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 57889999999875556666688999999999999999777778999999999999999999777778999999999999
Q ss_pred cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
++|++.+..+..+..+++|+++++++|.++...+..+..+++|+.|++++|++..+
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99999988788899999999999999999988889999999999999999998654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=7.6e-22 Score=143.83 Aligned_cols=91 Identities=38% Similarity=0.592 Sum_probs=70.2
Q ss_pred CCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEE
Q 032459 50 CKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLD 129 (140)
Q Consensus 50 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 129 (140)
++.|+.+++++|.+++..|..++.++.|+.|++++|.+.+..|..+..+++|+++++++|.+++..|..+..+++|++++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 34566677777777666777777777788888888887777777777788888888888888777788888888888888
Q ss_pred cCCCccceecC
Q 032459 130 LSVNNLTGSLC 140 (140)
Q Consensus 130 l~~n~~~~~~~ 140 (140)
+++|.++|.||
T Consensus 711 ls~N~l~g~iP 721 (768)
T 3rgz_A 711 LSNNNLSGPIP 721 (768)
T ss_dssp CCSSEEEEECC
T ss_pred CcCCcccccCC
Confidence 88888888776
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.9e-21 Score=125.14 Aligned_cols=136 Identities=24% Similarity=0.246 Sum_probs=87.3
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 59 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 59 TKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 45666666666654 33433345566666666666666654445556666677777777766644444556667777777
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++|.+.+..+..+..+++|+++++++|.++...+..+..+++|+.+++++|++..+
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 777777655445566677777777777777655555666777777777777776554
No 4
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.4e-21 Score=125.98 Aligned_cols=138 Identities=24% Similarity=0.253 Sum_probs=101.1
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus 84 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 356777777777764 4555545667778888888887775555556777788888888887775555566777888888
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 139 (140)
++++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.+++++|++.+..
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 88888877655566677788888888888887766666777888888888888776654
No 5
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=4.6e-21 Score=120.12 Aligned_cols=138 Identities=22% Similarity=0.235 Sum_probs=119.9
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
+++++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|+.++
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 57899999999986 67776668899999999999999966666678899999999999999866666788999999999
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
+++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.+++++|++.+..|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99999986666678889999999999999987766778899999999999998876543
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=2.1e-21 Score=122.77 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=120.4
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++++.|++++|.+. .++...+..+++|++|++++|.++...|..|..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 46899999999985 56665668899999999999999988889999999999999999999966556678899999999
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
+++|.+.+..+..+..+++|+++++++|.++...+..+..+++|+.+++++|++..
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999998878889999999999999999998777888999999999999998753
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.5e-21 Score=129.26 Aligned_cols=138 Identities=24% Similarity=0.424 Sum_probs=110.0
Q ss_pred CCceEEEccCCeecc--cCCcccccCCCcccEEEccC-CccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCcc
Q 032459 2 SSLLSIRFTNNTLFG--ELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLI 78 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 78 (140)
.+++.|+++++.+.+ .+|..+ ..+++|++|++++ |.+.+..|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467788888888876 677665 6688888888884 788777888888888888888888888767777788888888
Q ss_pred EEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCC-CCCeEEcCCCccceecC
Q 032459 79 RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS-SLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 79 ~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~ 140 (140)
++++++|.+.+..|..+..+++|+++++++|.+++..|..++.++ +|+.|++++|.+++.+|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 888888888877777788888888888888888777777777776 78888888887776654
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=2.6e-21 Score=141.03 Aligned_cols=138 Identities=37% Similarity=0.567 Sum_probs=93.2
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.|++++|.+.+.+|..+ ..+++|++|++.+|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 455666666666555555444 4566666666666666666666666666666777766666666666666677777777
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
+++|++.+..|..+..+++|+++++++|.+++..|..+..+++|+.+++++|.++|.+|
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 77777776667777777777777777777776777777777777777777777776665
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.5e-21 Score=129.98 Aligned_cols=137 Identities=26% Similarity=0.326 Sum_probs=86.4
Q ss_pred CCceEEEccCCeecccCCcccc--------cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhcc
Q 032459 2 SSLLSIRFTNNTLFGELPPNFC--------NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGN 73 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~--------~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 73 (140)
++|++|++++|...+.+|..+. ..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ ..|..+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc
Confidence 4455555555444444444431 23555666666666555 55555666666666666666666 34555666
Q ss_pred CCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459 74 VTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 74 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
+++|+.|++++|.+.+..|..+..+++|+++++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 6677777777766666666666667777777777777666667667777777777777777766665
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.4e-21 Score=129.39 Aligned_cols=110 Identities=29% Similarity=0.553 Sum_probs=49.9
Q ss_pred CCceEEEccC-CeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTN-NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
++|++|++++ +.+.+.+|..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 3445555552 44444444443 344455555555544444444444444444444444444444444444444444444
Q ss_pred EecCCcccccCChhccCCC-CCcEEeccccccc
Q 032459 81 YLRGNQLQGEIPEELGNLA-ELEMLWLQNNFLT 112 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~ 112 (140)
++++|.+.+..|..+..++ +|+++++++|.++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 4444444434444444333 4444444444443
No 11
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.4e-20 Score=121.12 Aligned_cols=136 Identities=23% Similarity=0.277 Sum_probs=118.6
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++++.|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 35 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 46889999999986 45554458899999999999999987777888999999999999999976667888999999999
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 999999866666778899999999999999877777889999999999999988754
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=1.4e-20 Score=119.63 Aligned_cols=135 Identities=21% Similarity=0.275 Sum_probs=117.0
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.|++++|.+.+ ++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 578999999999964 4444458899999999999999855556678899999999999999966667788999999999
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++|++. ..|..+..+++|+++++++|.++...+..+..+++|+.+++++|++..+
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9999998 6688888999999999999999877667788999999999999988643
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.9e-20 Score=120.70 Aligned_cols=133 Identities=27% Similarity=0.353 Sum_probs=57.4
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 61 ~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp TTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 34444455444442 33433334444444555444444433333334444444444444444433333344444444444
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
+++|.+.+..+..+..+++|+.+++++|.++...+..+..+++|+.|++++|.+
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 444444433223334444444444444444433333344444444444444433
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.2e-20 Score=130.09 Aligned_cols=138 Identities=22% Similarity=0.217 Sum_probs=123.6
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.|++++|.+.+..+..+ ..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVF-SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhc-ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 478999999999875555544 7899999999999999988888999999999999999999877788889999999999
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
+++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.|++++|+++++.|
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999998888889999999999999999997766778899999999999999988765
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=2e-20 Score=122.27 Aligned_cols=112 Identities=22% Similarity=0.311 Sum_probs=44.8
Q ss_pred cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 103 (140)
..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+.+..+..+..+++|++
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 33444444444444444333333334444444444444443222233333444444444444443222223333344444
Q ss_pred EecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 104 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
+++++|.+++..+..+..+++|+.|++++|.+
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 44444444333333344444444444444433
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=2.1e-20 Score=124.53 Aligned_cols=134 Identities=22% Similarity=0.291 Sum_probs=69.0
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcC---------CCCCCEEEeeccccccCcchhhcc
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSN---------CKRLRNISLSLDDFSGTIPKEIGN 73 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~---------~~~L~~l~l~~~~~~~~~~~~~~~ 73 (140)
+|++|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.++ ..|..+..
T Consensus 128 ~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~ 204 (328)
T 4fcg_A 128 GLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204 (328)
T ss_dssp TCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG
T ss_pred CCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC
Confidence 3444444444432 333332 33444444444444433344433322 444555555555444 44445555
Q ss_pred CCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459 74 VTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 74 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
+++|+.|++++|.+.+ .|..+..+++|+++++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus 205 l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 5566666666666552 34445556666666666666655566666666666666666666555543
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=3.3e-20 Score=122.28 Aligned_cols=136 Identities=20% Similarity=0.196 Sum_probs=63.2
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecccccc-CcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG-TIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l 80 (140)
++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++. ..|..+..+++|+.+
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 4455555555555322221223445555555555555544444444445555555555554442 234444444455555
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 555554444434444444445555555544443333334444444444444444433
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=5.4e-20 Score=119.62 Aligned_cols=136 Identities=22% Similarity=0.240 Sum_probs=114.2
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+.+ ++ . +..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus 62 l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-IS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTSCCCC-CG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCC-ch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 4788899999998753 33 3 3678999999999999987666677889999999999999986666678889999999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 139 (140)
++++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 99999998666667788999999999999998777777888999999999999887643
No 19
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.9e-20 Score=119.29 Aligned_cols=136 Identities=27% Similarity=0.331 Sum_probs=120.3
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus 84 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 478999999999985 6777777889999999999999997777788899999999999999996666678899999999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++++|.+....+..+..+++|+++++++|.++...+..+..+++|+.+++++|++..
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 999999987766778889999999999999987766778889999999999998754
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=5.4e-20 Score=120.19 Aligned_cols=136 Identities=24% Similarity=0.265 Sum_probs=68.0
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCc-cccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
++|++|++++|.+.+..+. .+..+++|++|++++|. +....+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 3444444444444322122 22444555555555554 443334444445555555555555544434445555555555
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
++++|.+.+..+..+..+++|+++++++|.++...+..+..+++|+.|++++|.+++.
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 5555555543334455555566666666655544444455566666666666655543
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=4.3e-20 Score=131.45 Aligned_cols=136 Identities=19% Similarity=0.200 Sum_probs=119.9
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
+++++|++++|.+. .++...|..+++|++|++++|.++...+..|..+++|++|++++|+++...+..|..+++|+.|+
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 36899999999985 67776678999999999999999977778899999999999999999866667889999999999
Q ss_pred ecCCcccccCChhccCCCCCcEEeccccccccc-CcccccCCCCCCeEEcCCCcccee
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++|.+.+..+..+..+++|++|++++|.++.. .+..+..+++|+.|++++|.+++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 999999866666788999999999999998754 567788999999999999988764
No 22
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.84 E-value=7.5e-20 Score=113.41 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=115.6
Q ss_pred eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCc-CCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (140)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 83 (140)
+.++++++.+ +.+|..+ ...+++|++++|.+++..+. .+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus 11 ~~l~~s~~~l-~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCC-SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCc-CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 5688999988 5888876 34899999999999855554 47889999999999999997778899999999999999
Q ss_pred CCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 139 (140)
+|++.+..+..+..+++|+++++++|.+++..+..+..+++|+.+++++|++.++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 99999877788889999999999999999888899999999999999999987653
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=7.6e-20 Score=120.52 Aligned_cols=137 Identities=19% Similarity=0.234 Sum_probs=120.9
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCcccc-CCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 79 (140)
+++|+.|++++|.+.+..+.. +..+++|++|++++|.+++ ..|..+..+++|+.|++++|.++...+..+..+++|+.
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 478999999999986554444 4789999999999999986 57888899999999999999999777888999999999
Q ss_pred EEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCC-CCCeEEcCCCcccee
Q 032459 80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS-SLSNLDLSVNNLTGS 138 (140)
Q Consensus 80 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~ 138 (140)
+++++|.+.+..+..+..+++|+++++++|.+++..+..+..++ +|+.|++++|+++++
T Consensus 204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 99999999877677788899999999999999988888888885 999999999998754
No 24
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.83 E-value=7.8e-20 Score=111.00 Aligned_cols=133 Identities=25% Similarity=0.186 Sum_probs=114.6
Q ss_pred CCceEEEccCCeec-ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
++|+.|++++|.+. +.+|..+ ..+++|++|++++|.+++. ..+..+++|+.|++++|.++...|..+..+++|+.+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 67999999999986 5777764 7799999999999999854 778889999999999999996677777789999999
Q ss_pred EecCCcccccC-ChhccCCCCCcEEecccccccccCc---ccccCCCCCCeEEcCCCccce
Q 032459 81 YLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 81 ~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++++|.+.+.. +..+..+++|+++++++|.+++..+ ..+..+++|+.|++++|.+.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999998543 2678889999999999999986655 478899999999999987643
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=8.7e-20 Score=128.80 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=120.4
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc-cCcchhhccCCCccE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS-GTIPKEIGNVTKLIR 79 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~ 79 (140)
+++|+.|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ ...|..+..+++|+.
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 4678888888888876556555678899999999999998888888888999999999999886 457788888999999
Q ss_pred EEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459 80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 80 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
+++++|.+.+..|..+..+++|+++++++|.+++..+..+..+++|+.+++++|+++++.|
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 9999999987778888899999999999999988777888899999999999999988754
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=1.8e-19 Score=117.27 Aligned_cols=136 Identities=19% Similarity=0.200 Sum_probs=108.2
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
+++++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.++
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 35888899988885 45554457788999999999988866666788888899999998888866667788888888888
Q ss_pred ecCCcccccCChhccCCCCCcEEeccccccccc-CcccccCCCCCCeEEcCCCcccee
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++|.+.+..+..+..+++|+++++++|.+++. .|..+..+++|+.|++++|.+++.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 888888766555677888888888888888763 477888888888888888877653
No 27
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=3.1e-19 Score=111.00 Aligned_cols=129 Identities=21% Similarity=0.210 Sum_probs=80.9
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|++|++++|.+. .+ .. +..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.++
T Consensus 66 ~~L~~L~l~~n~~~-~~-~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 66 HNIKDLTINNIHAT-NY-NP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp TTCSEEEEESCCCS-CC-GG-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCEEEccCCCCC-cc-hh-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 45666666666432 22 22 25567777777777777655666666777777777777777655566666777777777
Q ss_pred ecCCc-ccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 82 LRGNQ-LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 82 l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
+++|. +. ..+ .+..+++|+++++++|.+++. + .+..+++|+.|++++|.+++
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 77776 44 223 466677777777777777643 2 56667777777777777655
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=1.3e-19 Score=128.92 Aligned_cols=135 Identities=23% Similarity=0.173 Sum_probs=81.2
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecccccc-CcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG-TIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l 80 (140)
++|+.|++++|.+.+..+...+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ ..|..+..+++|+.+
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 4566666666666544443334556666666666666665555556666666666666666654 245555566666666
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
++++|.+.+..|..+..+++|+++++++|.+++..|..+..+++|+.|++++|.++
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 66666666555555666666666666666666555556666666666666666554
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=4.6e-19 Score=116.23 Aligned_cols=109 Identities=28% Similarity=0.333 Sum_probs=48.1
Q ss_pred CCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEe
Q 032459 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW 105 (140)
Q Consensus 26 l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~ 105 (140)
+++|++|++++|.++ .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|++....+..+..+++|+.++
T Consensus 76 l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 334444444444443 3333444444444444444444433334444444444444444444433333334444444444
Q ss_pred cccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 106 LQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
+++|.++...+..+..+++|+.|++++|.+
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 444444433333334444444444444443
No 30
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.82 E-value=1.3e-19 Score=107.97 Aligned_cols=128 Identities=24% Similarity=0.215 Sum_probs=109.6
Q ss_pred CCceEEEccCCeec-ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
++++.|++++|.+. +.+|..+ ..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+++|+.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 57899999999987 5777654 7899999999999999854 778889999999999999986677777789999999
Q ss_pred EecCCccccc-CChhccCCCCCcEEecccccccccCc---ccccCCCCCCeEEcCC
Q 032459 81 YLRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLSV 132 (140)
Q Consensus 81 ~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~ 132 (140)
++++|.+.+. .+..+..+++|+++++++|.+++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999853 23778889999999999999987655 5788899999998863
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=2.3e-19 Score=121.82 Aligned_cols=135 Identities=24% Similarity=0.277 Sum_probs=99.7
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++++.+++.++.+ +.+|..++..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 45 ~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 5677788888776 367777667778888888888887766666777778888888888877766666677778888888
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
+++|.+....+..+..+++|+++++++|.+++..+..+..+++|++|++++|.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 88887774433445677788888888887776666667777778888887776654
No 32
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=2.7e-19 Score=120.52 Aligned_cols=135 Identities=25% Similarity=0.277 Sum_probs=112.1
Q ss_pred CCceEEEccCCeecccCCccccc-CCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+.++.|++++|.+. .++...+. .+++|+.|++++|.++...+..|..+++|+.|++++|.++...+..+..+++|+.|
T Consensus 39 ~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 35788999999885 55555555 78999999999999997777788899999999999999986666778889999999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccc---cCCCCCCeEEcCCCccce
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI---FNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~n~~~~ 137 (140)
++++|.+....+..+..+++|+.|++++|.++...+..+ ..+++|+.|++++|.+++
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 999999987778888899999999999999986544545 568899999999998764
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=6.7e-20 Score=114.81 Aligned_cols=132 Identities=22% Similarity=0.322 Sum_probs=110.6
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus 51 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence 478999999999985 6777777889999999999999996666667889999999999999996666678889999999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
++++|.+.+..+..+..+++|+++++++|++.. .+++++.+++..|.++|.+|
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBB
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceee
Confidence 999999986666668889999999999998763 34567777777777766654
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=4.8e-19 Score=125.97 Aligned_cols=136 Identities=24% Similarity=0.244 Sum_probs=115.9
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
+++++|++++|.+. .++...+..+++|++|++++|.+++..|..|..+++|++|++++|.++...|..+..+++|+.|+
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 46889999999885 45554457899999999999999877788888999999999999999877788899999999999
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccc-cCcccccCCCCCCeEEcCCCcccee
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++|.+.+..+..+..+++|+++++++|.+++ ..|..++.+++|+.|++++|.+++.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 99999886666778889999999999999876 4588899999999999999988764
No 35
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.81 E-value=7.8e-19 Score=108.94 Aligned_cols=128 Identities=30% Similarity=0.404 Sum_probs=112.4
Q ss_pred eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecC
Q 032459 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (140)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 84 (140)
+.++++++.+. .+|..+ .+.+++|++++|.++ .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46788888874 788765 368999999999998 7788899999999999999999977778899999999999999
Q ss_pred CcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
|++....+..+..+++|+++++++|.++...+..+..+++|+.+++++|++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99997777889999999999999999987766778899999999999998753
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=1.2e-18 Score=114.36 Aligned_cols=133 Identities=25% Similarity=0.233 Sum_probs=115.4
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+. .+|..+ ..+++|++|++++|+++...+..|..+++|+.|++++|.++...+..+..+++|+.|
T Consensus 76 l~~L~~L~Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CTTCCEEECCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCEEECCCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 467888888888875 677655 779999999999999997666789999999999999999997666778889999999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
++++|+++...+..+..+++|+++++++|.++ .+|..+...++|+.+++++|++.
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 99999998655566788999999999999998 66777888889999999999874
No 37
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.81 E-value=1.1e-18 Score=106.83 Aligned_cols=132 Identities=25% Similarity=0.247 Sum_probs=110.9
Q ss_pred ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459 4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (140)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 83 (140)
.+.++++++.+. .+|..+ .+.+++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 356788888774 677655 4789999999999996666677889999999999999986666677889999999999
Q ss_pred CCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 139 (140)
+|.+++..+..+..+++|+++++++|.+++..+..+..+++|+.+++++|++.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99999666667788999999999999998666666788999999999999987653
No 38
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.2e-18 Score=110.18 Aligned_cols=130 Identities=25% Similarity=0.300 Sum_probs=114.2
Q ss_pred eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecC
Q 032459 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (140)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 84 (140)
+.++.+++.+ ..+|..+ .+.+++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus 14 ~~v~c~~~~l-~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCC-SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCc-CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 3567777777 4778766 37899999999999977777899999999999999999977788999999999999999
Q ss_pred CcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459 85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
|.+....+..+..+++|+++++++|.++...+..+..+++|+.|++++|.+++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence 999966556678899999999999999988888999999999999999988753
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=1.9e-19 Score=128.94 Aligned_cols=121 Identities=18% Similarity=0.342 Sum_probs=82.3
Q ss_pred CCcccccCCCcccEEEccCCccccC-----------------CCcCCc--CCCCCCEEEeeccccccCcchhhccCCCcc
Q 032459 18 LPPNFCNHLSNLESLFLKNNMFHGK-----------------IPSTLS--NCKRLRNISLSLDDFSGTIPKEIGNVTKLI 78 (140)
Q Consensus 18 ~~~~~~~~l~~L~~L~l~~~~l~~~-----------------~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 78 (140)
+|..+ ..+++|++|++++|.+++. +|..+. .+++|++|++++|.+.+..|..+..+++|+
T Consensus 198 ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHH-hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 55544 5577777777777777754 666666 677777777777776666677777777777
Q ss_pred EEEecCCc-ccc-cCChhccCC------CCCcEEecccccccccCcc--cccCCCCCCeEEcCCCccceecC
Q 032459 79 RLYLRGNQ-LQG-EIPEELGNL------AELEMLWLQNNFLTRAIPS--SIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 79 ~l~l~~~~-~~~-~~~~~~~~~------~~l~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
.|++++|+ +.+ ..|..+..+ ++|+++++++|.++ .+|. .++.+++|+.|++++|.++|.+|
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 77777776 665 556555544 67777777777776 5555 66777777777777777766654
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=8.6e-20 Score=120.75 Aligned_cols=136 Identities=23% Similarity=0.246 Sum_probs=87.4
Q ss_pred CCCceEEEccCCeecccCCcccc-cCCCcccEEEccCCccccCCCcCCcCC-----CCCCEEEeeccccccCcchhhccC
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFC-NHLSNLESLFLKNNMFHGKIPSTLSNC-----KRLRNISLSLDDFSGTIPKEIGNV 74 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~~~~~ 74 (140)
+++|++|++++|.+.+.+|..++ ..+++|++|++++|.+++. |..+..+ ++|+.|++++|.++...+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 35788888888888777777654 6678888888888888754 6555554 777778887777776555677777
Q ss_pred CCccEEEecCCccccc--CChhc--cCCCCCcEEecccccccc---cCcccccCCCCCCeEEcCCCccce
Q 032459 75 TKLIRLYLRGNQLQGE--IPEEL--GNLAELEMLWLQNNFLTR---AIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 75 ~~L~~l~l~~~~~~~~--~~~~~--~~~~~l~~l~l~~~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++|+.+++++|++.+. .+..+ ..+++|+++++++|.+++ .....+..+++|+.|++++|.+++
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 7777777777775432 12222 455666666666666652 111222345556666666665554
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=7e-19 Score=114.44 Aligned_cols=135 Identities=22% Similarity=0.293 Sum_probs=105.4
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++.+|.+....+..+..+++|+.+
T Consensus 51 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 51 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp CTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred ccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence 468899999999885 5555555788999999999999987777788889999999999998886655578888899999
Q ss_pred EecCCccccc-CChhccCCCCCcEEecccccccccCcccccCCCCCC----eEEcCCCccc
Q 032459 81 YLRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS----NLDLSVNNLT 136 (140)
Q Consensus 81 ~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~----~l~l~~n~~~ 136 (140)
++++|.+.+. .|..+..+++|+++++++|.+++..+..+..+++++ .+++++|.++
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence 9999988754 477888889999999999988766555555444444 5555555554
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=5.5e-19 Score=125.77 Aligned_cols=135 Identities=24% Similarity=0.277 Sum_probs=96.0
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++++.+++.++.+ +.+|..++..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 51 ~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 4566777777776 366666666777777777777777766666777777777777777777765566667777777777
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
+++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 77777774444445677777777777777776666667777777777777776654
No 43
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=6.5e-19 Score=109.54 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=112.9
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+. .++ .+ ..+++|++|++++|.++ .+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GI-EYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TG-GGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HH-hcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 357899999999985 666 33 77999999999999776 34477889999999999999987678888999999999
Q ss_pred EecCCcccccCChhccCCCCCcEEeccccc-ccccCcccccCCCCCCeEEcCCCccce
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++++|.+.+..+..+..+++|+++++++|. ++ ..+ .+..+++|+.|++++|.+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence 999999987778889999999999999998 65 444 68899999999999998875
No 44
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.6e-18 Score=109.57 Aligned_cols=131 Identities=22% Similarity=0.255 Sum_probs=114.3
Q ss_pred eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCC-cCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (140)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 83 (140)
+.++++++.+. .+|..+ .+.+++|++++|.+++..+ ..+..+++|+.|++++|.++...+..+..+++|+.|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 46888998874 688765 3567899999999996544 457889999999999999997767789999999999999
Q ss_pred CCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 139 (140)
+|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 99999777778999999999999999999888899999999999999999987654
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=8.5e-19 Score=121.70 Aligned_cols=132 Identities=20% Similarity=0.208 Sum_probs=67.5
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
+++.|++++|.+. .++...+..+++|++|++++|.+++..|..|..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 33 ~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4555666666553 233333355556666666665555544555555555555555555555333334445555555555
Q ss_pred cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
++|.+.+..+..+..+++|+++++++|.++...+..+..+++|+.|++++|.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 55555544444444455555555555554444444444444444444444443
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=1.7e-18 Score=123.22 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=58.6
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccC---cchhhccCCCccE
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT---IPKEIGNVTKLIR 79 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~~L~~ 79 (140)
+|+.|++++|.+.+..+...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++. .+..+..+++|+.
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 3444444444443333333233444444444444444433444444444444444444444321 1123344444444
Q ss_pred EEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 80 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
+++++|.+.+..|..+..+++|+++++++|.+++..+..+..+++| .+++++|.++
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 4444444444444444444445555555554444444444444444 4444444443
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=9.3e-19 Score=121.51 Aligned_cols=134 Identities=21% Similarity=0.190 Sum_probs=80.8
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|++|++++|.+.+..|.. +..+++|++|++++|.++...+..|..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChhh-hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 356777777777665333333 3667777777777777764444455666777777777776665555566666666666
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
++++|.+.+..+..+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 6666666555555555666666666666665544444444555555555555444
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=9.1e-19 Score=120.79 Aligned_cols=137 Identities=21% Similarity=0.279 Sum_probs=113.1
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCC-CcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI-PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+.+ +..+..+++|++|++++|.++...|..+..+++|+.|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 578999999999864444444 78999999999999887443 5678889999999999999987778889999999999
Q ss_pred EecCCcccccCChh--ccCCCCCcEEecccccccccCccc-ccCCCCCCeEEcCCCccceec
Q 032459 81 YLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIPSS-IFNLSSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 81 ~l~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~ 139 (140)
++++|.+.+..+.. +..+++|+++++++|.+++..+.. +..+++|++|++++|.+++..
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 99999987644443 778899999999999998776765 788999999999999887643
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=119.91 Aligned_cols=131 Identities=24% Similarity=0.241 Sum_probs=81.9
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
+|++|++++|...+.++...+..+++|++|++++|.++ .+| .+..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence 33334443332223333334455566666666666665 333 3456666777777777666555666667777777777
Q ss_pred cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
++|.+.+..+..+..+++|+.+++++|.++...+..+..+++|+.|++++|++
T Consensus 239 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 77777666666666777777777777777766556666777777777777765
No 50
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=2.9e-19 Score=128.01 Aligned_cols=133 Identities=22% Similarity=0.330 Sum_probs=108.2
Q ss_pred CCCceEEEccCCeeccc-----------------CCccccc--CCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc
Q 032459 1 MSSLLSIRFTNNTLFGE-----------------LPPNFCN--HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~ 61 (140)
+++|++|++++|.+.+. +|..+ . .+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 57899999999998764 88877 5 7999999999999999899999999999999999999
Q ss_pred c-ccc-CcchhhccC------CCccEEEecCCcccccCCh--hccCCCCCcEEecccccccccCcccccCCCCCCeEEcC
Q 032459 62 D-FSG-TIPKEIGNV------TKLIRLYLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS 131 (140)
Q Consensus 62 ~-~~~-~~~~~~~~~------~~L~~l~l~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 131 (140)
. +++ ..|..+..+ ++|+.+++++|.+. ..|. .+..+++|+++++++|.+++.+| .+..+++|+.|+++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 8 776 567766665 78888888888888 6676 78888888888888888876666 66666677777777
Q ss_pred CCccc
Q 032459 132 VNNLT 136 (140)
Q Consensus 132 ~n~~~ 136 (140)
+|.++
T Consensus 362 ~N~l~ 366 (636)
T 4eco_A 362 YNQIT 366 (636)
T ss_dssp SSEEE
T ss_pred CCccc
Confidence 76655
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=117.64 Aligned_cols=136 Identities=20% Similarity=0.239 Sum_probs=102.9
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.++
T Consensus 52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 46888888888875 55655557788889999988888876677788888888888888888854445577888888888
Q ss_pred ecCCcccccCC-hhccCCCCCcEEecccc-cccccCcccccCCCCCCeEEcCCCcccee
Q 032459 82 LRGNQLQGEIP-EELGNLAELEMLWLQNN-FLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 82 l~~~~~~~~~~-~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++|++..... ..+..+++|+++++++| .++...+..+..+++|++|++++|.+++.
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 88888874433 35677788888888887 35555566677777888888887776654
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=2.3e-18 Score=122.53 Aligned_cols=134 Identities=20% Similarity=0.160 Sum_probs=84.4
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
++++|++++|.+. .+++..+..+++|++|++++|.+++..|..|..+++|+.|++++|.++...|..+..+++|+.|++
T Consensus 34 ~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 4667777777765 333333366777777777777776666666777777777777777766555666666677777777
Q ss_pred cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++|.+.+..+..+..+++|+++++++|.+++.....+..+++|+.|++++|.+++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 7766665444555666666666666666654333333346666666666665543
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=120.91 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=106.5
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++++.|++++|.+. .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.++...+..+..+++|+.++
T Consensus 28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 36788888888875 44444457788889999988888876677788888888888888888766667788888888888
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccc-cCcccccCCCCCCeEEcCCCcccee
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++|.+....+..+..+++|+++++++|.++. ..|..+..+++|+.|++++|.+++.
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 88888875544457788888888888888876 3577788888888888888877653
No 54
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1e-17 Score=106.46 Aligned_cols=128 Identities=23% Similarity=0.312 Sum_probs=111.9
Q ss_pred eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecC
Q 032459 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (140)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 84 (140)
+.++.+++.+ +.+|..+ .++|+.|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus 22 ~~v~c~~~~l-~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRH-ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCc-CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4577777776 4788766 48999999999999987788899999999999999999866567788999999999999
Q ss_pred CcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
|.+.+..+..+..+++|+++++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCc
Confidence 9999766677889999999999999998 668888999999999999998864
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.9e-18 Score=110.26 Aligned_cols=131 Identities=16% Similarity=0.284 Sum_probs=87.6
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCc-cccCCCcCCcCCCCCCEEEeec-cccccCcchhhccCCCccEE
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGKIPSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l 80 (140)
++++|++++|.+. .++...+..+++|+.|++++|. ++...+..|..+++|+.|++++ |.++...+..+..+++|+.+
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5677777777764 5555445667777777777775 6655555667777777777776 77765545566677777777
Q ss_pred EecCCcccccCChhccCCCCCc---EEecccc-cccccCcccccCCCCCC-eEEcCCCccc
Q 032459 81 YLRGNQLQGEIPEELGNLAELE---MLWLQNN-FLTRAIPSSIFNLSSLS-NLDLSVNNLT 136 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~---~l~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~n~~~ 136 (140)
++++|.+.+ .|. +..+++++ ++++++| .++...+..+..+++|+ .+++++|.++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 777777664 333 55556665 7777777 66655555566666777 7777666654
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=1.3e-18 Score=122.41 Aligned_cols=138 Identities=20% Similarity=0.209 Sum_probs=113.3
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 47899999999986444444 47899999999999999977778899999999999999999876666788999999999
Q ss_pred ecCCccccc-CChhccCCCCCcEEeccccc-ccccCcccccCCCCCCeEEcCCCccceecC
Q 032459 82 LRGNQLQGE-IPEELGNLAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 82 l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
+++|.+.+. .+..+..+++|+++++++|. +....+..+..+++|++|++++|.+++.+|
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 999998753 45678888999999999988 443434678888999999999988877543
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=1.9e-18 Score=124.34 Aligned_cols=135 Identities=24% Similarity=0.222 Sum_probs=93.3
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
+++++|++++|.+. .++...+..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++++
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35777777777764 45554456677777777777777766666667777777777777777644444567777777777
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
+++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|++|++++|.+++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 77777765555666677777777777777766666666677777777777776544
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=3.2e-18 Score=118.24 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=77.2
Q ss_pred CcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCC
Q 032459 19 PPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL 98 (140)
Q Consensus 19 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 98 (140)
+...+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 33334455566666666666652 33 35566677777777777765556667777777777777777776666667777
Q ss_pred CCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 99 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
++|+.+++++|.++...+..+..+++|+.|++++|++.
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77777777777777665566667777777777777653
No 59
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.6e-18 Score=116.71 Aligned_cols=135 Identities=23% Similarity=0.228 Sum_probs=114.4
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+. .++...+..+++|++|++++|.++...+..|..+++|+.|++++|.++...+..+..+++|+.|
T Consensus 63 l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 63 LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 478999999999985 5666556889999999999999997777788899999999999999997778889999999999
Q ss_pred EecCCcccccCChhc---cCCCCCcEEecccccccccCcccccCCCC--CCeEEcCCCccc
Q 032459 81 YLRGNQLQGEIPEEL---GNLAELEMLWLQNNFLTRAIPSSIFNLSS--LSNLDLSVNNLT 136 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~---~~~~~l~~l~l~~~~~~~~~~~~~~~~~~--L~~l~l~~n~~~ 136 (140)
++++|.+....+..+ ..+++|+.|++++|.++...+..+..++. ++.+++++|++.
T Consensus 142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 999999985444444 56899999999999998666677777776 488999999875
No 60
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=125.80 Aligned_cols=135 Identities=21% Similarity=0.171 Sum_probs=84.5
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCC-CcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI-PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
++++.|++++|.+.+..+.. +..+++|++|++++|...+.+ |..|..+++|++|++++|.+....|..+..+++|+.|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 46677777777765333333 366677777777776443333 5566666777777777776665556666666777777
Q ss_pred EecCCcccccCChh--ccCCCCCcEEecccccccccCc-ccccCCCCCCeEEcCCCccce
Q 032459 81 YLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 81 ~l~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++++|.+.+..+.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 77777666544433 5566667777777766655433 456666667777766666544
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=4.7e-18 Score=125.09 Aligned_cols=139 Identities=20% Similarity=0.210 Sum_probs=121.7
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchh--hccCCCcc
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE--IGNVTKLI 78 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~--~~~~~~L~ 78 (140)
+++|+.|++++|...+.++...+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+.. +..+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 5789999999997767786666689999999999999999888999999999999999999998655554 88899999
Q ss_pred EEEecCCcccccCC-hhccCCCCCcEEecccccccccCcccccCC--CCCCeEEcCCCccceec
Q 032459 79 RLYLRGNQLQGEIP-EELGNLAELEMLWLQNNFLTRAIPSSIFNL--SSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 79 ~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~--~~L~~l~l~~n~~~~~~ 139 (140)
.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+ ++|+.|+++.|.+.+.+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence 99999999986655 578899999999999999988888888776 89999999999887754
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.5e-17 Score=118.46 Aligned_cols=112 Identities=19% Similarity=0.198 Sum_probs=82.7
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+. .++...+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++...+..+..+++|+.|
T Consensus 74 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 467888888888775 4444344678888888888888886666677778888888888888775444556777888888
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 113 (140)
++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 888888776666677777778888877777654
No 63
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=1.4e-17 Score=112.97 Aligned_cols=131 Identities=20% Similarity=0.194 Sum_probs=106.0
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus 68 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 578999999999985 5555555889999999999999997777888999999999999999985444556889999999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
++++|.+.+..+..+..+++|+++++++|.+++.. +..+++|+.+++++|.+
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence 99999998777778889999999999999987542 33445555555554443
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=8.2e-18 Score=116.23 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=79.4
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++++.|++++|.+.+ ++...+..+++|++|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 75 ~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 356677777777643 3333336677777777777777765566666677777777777776654445566666777777
Q ss_pred ecCCcccccCChhccCC-------------------------CCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 82 LRGNQLQGEIPEELGNL-------------------------AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~-------------------------~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
+++|.+....+..+..+ ++|+++++++|.+++. + .+..+++|+.|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 77766654333344444 4455555555554422 1 2445556666666666554
Q ss_pred ee
Q 032459 137 GS 138 (140)
Q Consensus 137 ~~ 138 (140)
+.
T Consensus 232 ~~ 233 (452)
T 3zyi_A 232 EI 233 (452)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=1.3e-17 Score=114.93 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=29.9
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~ 64 (140)
++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++
T Consensus 88 ~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 88 RHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp SSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred CCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 45555555555543 333333344555555555555555333334444455555555544443
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2.3e-18 Score=126.68 Aligned_cols=133 Identities=20% Similarity=0.290 Sum_probs=102.0
Q ss_pred CCCceEEEccCCeecc-----------------cCCccc-ccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccc
Q 032459 1 MSSLLSIRFTNNTLFG-----------------ELPPNF-CNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~ 62 (140)
|++|+.|++++|.+.+ .+|..+ |..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5788899999998876 378776 3378899999999998888888888888899999998887
Q ss_pred -ccc-CcchhhccCC-------CccEEEecCCcccccCCh--hccCCCCCcEEecccccccccCcccccCCCCCCeEEcC
Q 032459 63 -FSG-TIPKEIGNVT-------KLIRLYLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS 131 (140)
Q Consensus 63 -~~~-~~~~~~~~~~-------~L~~l~l~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 131 (140)
+++ ..|..+..++ +|+.|++++|.+. ..|. .+..+++|+.|++++|.++ .+| .+..+++|+.|+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence 765 5666555444 7888888888877 6666 6777778888888877776 555 66667777777777
Q ss_pred CCccc
Q 032459 132 VNNLT 136 (140)
Q Consensus 132 ~n~~~ 136 (140)
+|.++
T Consensus 604 ~N~l~ 608 (876)
T 4ecn_A 604 YNQIE 608 (876)
T ss_dssp SSCCS
T ss_pred CCccc
Confidence 77665
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=115.47 Aligned_cols=134 Identities=19% Similarity=0.175 Sum_probs=86.4
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcc-hhhccCCCccE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIP-KEIGNVTKLIR 79 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~ 79 (140)
+++|+.|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+ ..+..+++|+.
T Consensus 75 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 75 CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence 456777788777765 3443334667777777777777774333336667777777777777763322 35666777777
Q ss_pred EEecCCc-ccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 80 LYLRGNQ-LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 80 l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
+++++|. +....+..+..+++|+++++++|.+++..+..+..+++|++|++++|.+
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 7777763 4444455666667777777777777666566666666666666665544
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=3.2e-17 Score=109.08 Aligned_cols=131 Identities=18% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCceEEEccCCeecc-cCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLFG-ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
++|+.|++++|.+.. ......+..+++|++|++++|.++ .+|..+. ++|+.|++++|.++...+..+..+++|+.+
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 344445555444421 122222244455555555555444 2333221 445555555555554444555555666666
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
++++|.+.+..+..+..+++|+++++++|.++ .+|..+..+++|++|++++|.++
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 66666655444445555566666666666655 44455555566666666666554
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=3.9e-18 Score=112.82 Aligned_cols=134 Identities=19% Similarity=0.110 Sum_probs=80.6
Q ss_pred CCCceEEEccCCeecccCCcccccCC-----CcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccC--cchhh--
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHL-----SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT--IPKEI-- 71 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~-- 71 (140)
+++|++|++++|.+.+. |..+ ..+ ++|++|++++|.+++..+..+..+++|+.|++++|.+.+. .+..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 35677777777777543 4333 333 6777777777777765556777777777777777765432 12222
Q ss_pred ccCCCccEEEecCCccccc--CC-hhccCCCCCcEEecccccccccCc-ccccCCCCCCeEEcCCCccc
Q 032459 72 GNVTKLIRLYLRGNQLQGE--IP-EELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 72 ~~~~~L~~l~l~~~~~~~~--~~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~ 136 (140)
..+++|+.+++++|.+.+. .+ ..+..+++|+++++++|.+++..+ ..+..+++|+.|++++|.++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 5566677777777766521 11 222345666677777666665443 33444566666666666655
No 70
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.75 E-value=1e-17 Score=102.44 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=107.0
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|++|++++|.+. .++. +....++|+.|++++|.+++. ..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 367899999999986 5544 434445999999999999854 678889999999999999985544556889999999
Q ss_pred EecCCcccccCCh--hccCCCCCcEEecccccccccCcc----cccCCCCCCeEEcCCCccc
Q 032459 81 YLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPS----SIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 81 ~l~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~----~~~~~~~L~~l~l~~n~~~ 136 (140)
++++|.+.. .+. .+..+++|+.+++++|+++.. +. .+..+++|+.++++.|...
T Consensus 94 ~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999973 444 778899999999999999844 54 4888999999999988754
No 71
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=1e-17 Score=120.59 Aligned_cols=138 Identities=26% Similarity=0.283 Sum_probs=112.4
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+.+ ++...+..+++|++|++++|.++...+..|..+++|++|++++|.++...+..+..+++|+++
T Consensus 48 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp GTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence 4678999999998864 444445789999999999999985555578889999999999999886666788889999999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCccccc--CCCCCCeEEcCCCccceec
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF--NLSSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~--~~~~L~~l~l~~n~~~~~~ 139 (140)
++++|.+.+..+..+..+++|+++++++|.+++..+..+. .+++|+.|++++|.+++..
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred ECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence 9999998877777788889999999999988866665543 4578999999998876543
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=116.99 Aligned_cols=134 Identities=27% Similarity=0.346 Sum_probs=70.6
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCcccc--CCCcCCcCCCCCCEEEeeccccccCcch-hhccCC---
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPK-EIGNVT--- 75 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~--- 75 (140)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++ ..|..+..+++|+.|++++|.+....|. .+..++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 456666666666654445444 456666666666666653 2334455555666666666655532332 233333
Q ss_pred -------------------CccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 76 -------------------KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 76 -------------------~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
+|+.+++++|++. ..|..+..+++|+++++++|.++...+..+..+++|+++++++|+++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp EEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 4444444444444 33444445555666666666655322223555566666666666654
Q ss_pred e
Q 032459 137 G 137 (140)
Q Consensus 137 ~ 137 (140)
+
T Consensus 482 c 482 (520)
T 2z7x_B 482 C 482 (520)
T ss_dssp C
T ss_pred c
Confidence 4
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.3e-17 Score=106.45 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=73.6
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccC-CccccCCCcCCcCCCCCCEEEeecccccc--------------
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLSNCKRLRNISLSLDDFSG-------------- 65 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~l~l~~~~~~~-------------- 65 (140)
+++|+.|++++|...+.++...+..+++|++|++++ |.++...+..|..+++|+.|++++|.++.
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~ 133 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF 133 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEE
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccccccc
Confidence 356666777666522355554445666666666666 66664444455556666666666655542
Q ss_pred ------------CcchhhccCCCcc-EEEecCCcccccCChhccCCCCCcEEeccccc-ccccCcccccCC-CCCCeEEc
Q 032459 66 ------------TIPKEIGNVTKLI-RLYLRGNQLQGEIPEELGNLAELEMLWLQNNF-LTRAIPSSIFNL-SSLSNLDL 130 (140)
Q Consensus 66 ------------~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~-~~L~~l~l 130 (140)
..+..+..+++|+ .+++++|++....+..+.. ++|+.+++++|. ++...+..+..+ ++|+.+++
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 2223344455555 5555555554222222222 556666666663 554444555566 66667777
Q ss_pred CCCccc
Q 032459 131 SVNNLT 136 (140)
Q Consensus 131 ~~n~~~ 136 (140)
++|.++
T Consensus 213 ~~N~l~ 218 (239)
T 2xwt_C 213 SQTSVT 218 (239)
T ss_dssp TTCCCC
T ss_pred CCCccc
Confidence 666654
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=5.8e-17 Score=115.38 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=98.2
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccc-cCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
++++.++++.|.+... +...+..++.++.|++++|.+. ...|..+..+++|+.|++++|.+++..|..+..+++|+.|
T Consensus 445 ~~l~~l~ls~n~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp TTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccccccc-cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 3455566666655433 3333356777778888777644 3456677778888888888888886667778888888888
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCC-CCCCeEEcCCCccc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL-SSLSNLDLSVNNLT 136 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~L~~l~l~~n~~~ 136 (140)
++++|++.+..+..+..+++|++|++++|.++...+..+..+ ++|+.|++++|++.
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 888888876667777788888888888888887777777776 57888888888764
No 75
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=2.4e-17 Score=102.09 Aligned_cols=113 Identities=20% Similarity=0.239 Sum_probs=100.3
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++++.|++++|.+.+..+...+..+++|++|++++|.+++..|..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 36899999999986444444568899999999999999988889999999999999999999977777888999999999
Q ss_pred ecCCcccccCChhccCCCCCcEEeccccccccc
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 114 (140)
+++|++.+..|..+..+++|+++++++|+++..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999999988888899999999999999998743
No 76
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=6e-17 Score=107.74 Aligned_cols=130 Identities=19% Similarity=0.281 Sum_probs=82.0
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++++.|++++|.+. .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|.++ ..|..+. ++|+.++
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 45777788887775 445444467788888888888887666777777788888888877776 3333322 4566666
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccc--cCcccccCCCCCCeEEcCCCcc
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTR--AIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
+++|.+.+..+..+..+++|+++++++|.++. ..+..+..+++|+.|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 66666654444455566666666666666542 3344455555555555555544
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=7.8e-17 Score=105.69 Aligned_cols=124 Identities=28% Similarity=0.480 Sum_probs=57.8
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.|++++|.+. .++. +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.++.. ..+..+++|+.|+
T Consensus 68 ~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 68 PNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY 140 (291)
T ss_dssp TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEE
T ss_pred CCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEE
Confidence 44555555555543 2222 2445555555555555442 11 244445555555555554421 2344445555555
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
+++|.+.+. ..+..+++|+++++++|.+++..+ +..+++|+.|++++|.++
T Consensus 141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 555554422 334444555555555555543322 444555555555555443
No 78
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=6.1e-17 Score=119.24 Aligned_cols=133 Identities=18% Similarity=0.318 Sum_probs=85.5
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCC--------CCCCEEEeeccccccCcchhhc--
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNC--------KRLRNISLSLDDFSGTIPKEIG-- 72 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~--------~~L~~l~l~~~~~~~~~~~~~~-- 72 (140)
+|+.|++++|.+. .+|..++..+++|+.|++++|.++ .+|..+... ++|+.|++++|.++ ..|..+.
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence 5666666666664 566655556677777777777766 444433322 26777777777776 4565554
Q ss_pred cCCCccEEEecCCcccccCChhccCCCCCcEEeccc------ccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459 73 NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN------NFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 73 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
.+++|+.|++++|.+.+ .|..+..+++|+.|++++ |.+.+..|..+..+++|+.|++++|.+ +.+|
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 66777777777777764 466666677777777754 555566666677777777777777766 5544
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=6.1e-17 Score=107.82 Aligned_cols=133 Identities=25% Similarity=0.340 Sum_probs=73.1
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCcccc--CCCcCCcCC--------------------CCCCEEEeec
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNC--------------------KRLRNISLSL 60 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~--------------------~~L~~l~l~~ 60 (140)
+|++|++++|.+. .++...+..+++|+.|++.+|.++. ..+..+..+ ++|+.|++++
T Consensus 124 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~ 202 (332)
T 2ft3_A 124 SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH 202 (332)
T ss_dssp TCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS
T ss_pred cCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC
Confidence 3445555555443 3444444556666666666665531 222222221 2344444444
Q ss_pred cccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 61 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
|.++...+..+..+++|+.+++++|.+.+..+..+..+++|+++++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 4444333445555666666666666666555555666666777777777665 455556666677777777666543
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=3.9e-17 Score=114.39 Aligned_cols=110 Identities=25% Similarity=0.424 Sum_probs=87.8
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+.+.+|...+..+++|++|++++|.+++..|..+. ++|+.|++++|.++ ..|..+..+++|+.+
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 467777888888776557766566778888888888888766655543 68999999999988 677777799999999
Q ss_pred EecCCcccccCCh-hccCCCCCcEEeccccccccc
Q 032459 81 YLRGNQLQGEIPE-ELGNLAELEMLWLQNNFLTRA 114 (140)
Q Consensus 81 ~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~ 114 (140)
++++|+++. .|. .+..+++|+++++++|+++..
T Consensus 450 ~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 450 NVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 999999984 454 488899999999999998754
No 81
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=4.8e-17 Score=108.74 Aligned_cols=126 Identities=27% Similarity=0.441 Sum_probs=60.7
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|++|++++|.+. .++. +..+++|++|++++|.+++ + ..+..+++|+.|++++|.++.. ..+..+++|+.++
T Consensus 221 ~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 221 TRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLF 293 (347)
T ss_dssp TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred CcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEE
Confidence 34445555555443 2222 2445555555555555442 1 2344455555555555555422 2344455555555
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
+++|.+.+..+..+..+++|+++++++|.+++..+ +..+++|+.+++++|.++
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 55555554444445555555555555555553333 445555555555555543
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.72 E-value=4.4e-17 Score=115.22 Aligned_cols=134 Identities=22% Similarity=0.274 Sum_probs=72.0
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCcccc--CCCcCCcCCCCCCEEEeeccccccCcch-hhccCCC--
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPK-EIGNVTK-- 76 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~-- 76 (140)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++ ..|..+..+++|+.|++++|.+++..|. .+..+++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 456677777776655455444 556667777776666663 1233455666666666666666542332 2333444
Q ss_pred --------------------ccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 77 --------------------LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 77 --------------------L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
|+.+++++|++. ..|..+..+++|+++++++|.++...+..+..+++|+.+++++|++.
T Consensus 432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp EEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred EEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 444444444444 33333335555666666666555322222555566666666666554
Q ss_pred e
Q 032459 137 G 137 (140)
Q Consensus 137 ~ 137 (140)
+
T Consensus 511 c 511 (562)
T 3a79_B 511 C 511 (562)
T ss_dssp C
T ss_pred C
Confidence 4
No 83
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=1.3e-16 Score=106.21 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=47.9
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
+++.|++++|.+. .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|.++ ..|..+. ++|+.+++
T Consensus 55 ~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 3444555555443 222222244455555555555554444444444555555555555444 2222221 34455555
Q ss_pred cCCcccccCChhccCCCCCcEEecccccc
Q 032459 83 RGNQLQGEIPEELGNLAELEMLWLQNNFL 111 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 111 (140)
++|.+....+..+..+++|+++++++|.+
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 55544433333344455555555555544
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=109.88 Aligned_cols=135 Identities=21% Similarity=0.140 Sum_probs=70.3
Q ss_pred CCceEEEccCCeecccCCcccc-cCCCcccEEEccCCccccCCC----cCCcCCCCCCEEEeeccccccCcchhhccCCC
Q 032459 2 SSLLSIRFTNNTLFGELPPNFC-NHLSNLESLFLKNNMFHGKIP----STLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 76 (140)
++|++|++++|.+.+..|..++ ..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+....+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 3467777777776655555443 445566666666665553222 12234555555555555555444445555555
Q ss_pred ccEEEecCCcccc---------------------------cCCh----hccCCCCCcEEecccccccccCcccccCC---
Q 032459 77 LIRLYLRGNQLQG---------------------------EIPE----ELGNLAELEMLWLQNNFLTRAIPSSIFNL--- 122 (140)
Q Consensus 77 L~~l~l~~~~~~~---------------------------~~~~----~~~~~~~l~~l~l~~~~~~~~~~~~~~~~--- 122 (140)
|+.|++++|++.+ ..+. .+..+++|+++++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 5555555555321 1111 12344555555555555554444444443
Q ss_pred CCCCeEEcCCCccc
Q 032459 123 SSLSNLDLSVNNLT 136 (140)
Q Consensus 123 ~~L~~l~l~~n~~~ 136 (140)
++|+.|++++|.++
T Consensus 251 ~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 251 SALNSLNLSFAGLE 264 (310)
T ss_dssp TTCCCEECCSSCCC
T ss_pred CcCCEEECCCCCCC
Confidence 46666666666554
No 85
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=6e-17 Score=96.39 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=98.5
Q ss_pred CCCcccEEEccCCccc-cCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459 25 HLSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (140)
Q Consensus 25 ~l~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 103 (140)
..++++.|++++|.++ +.+|..+..+++|+.|++++|.++.. ..+..+++|+.+++++|.+.+..|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999999998 67888888999999999999999854 77888999999999999998767777778999999
Q ss_pred Eeccccccccc-CcccccCCCCCCeEEcCCCcccee
Q 032459 104 LWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 104 l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++++|.+++. .+..+..+++|+.|++++|.+++.
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 99999999864 337789999999999999998764
No 86
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=1.3e-16 Score=106.61 Aligned_cols=110 Identities=29% Similarity=0.354 Sum_probs=85.7
Q ss_pred cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 103 (140)
..+++|++|++++|.+++. +. +..+++|+.|++++|.++.. ..+..+++|+.+++++|.+.+. ..+..+++|+.
T Consensus 218 ~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 291 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS 291 (347)
T ss_dssp GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred hcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence 5567788888888877733 32 66778888888888877642 4567788888888888888743 45777888999
Q ss_pred EecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459 104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 104 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 139 (140)
+++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 999999988777788888999999999999887654
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.8e-16 Score=104.73 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=17.2
Q ss_pred ccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 95 LGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 95 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
+..+++|+.+++++|.+++..+ +..+++|+.|++++|.++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC
Confidence 3334444444444444432211 344445555555555443
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=1.1e-16 Score=113.15 Aligned_cols=106 Identities=22% Similarity=0.198 Sum_probs=50.2
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
++++|++++|.+. .++...+..+++|++|++++|.+++..|..|..+++|++|++++|.++ ..|.. .+++|+.|++
T Consensus 53 ~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 53 RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 3445555555443 333322344555555555555555444444555555555555555544 22322 4445555555
Q ss_pred cCCccccc-CChhccCCCCCcEEeccccccc
Q 032459 83 RGNQLQGE-IPEELGNLAELEMLWLQNNFLT 112 (140)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~ 112 (140)
++|.+.+. .|..+..+++|+++++++|.++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccc
Confidence 55554432 2344445555555555555544
No 89
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=2.7e-17 Score=108.97 Aligned_cols=130 Identities=22% Similarity=0.146 Sum_probs=85.9
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCc-CCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+. .+++|+.|++++|.++.. + ....+++|+.+
T Consensus 120 ~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L 196 (317)
T 3o53_A 120 QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL 196 (317)
T ss_dssp SSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred CCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEE
Confidence 45566666666654 33333335567777777777777655455443 567777777777777633 2 22246777788
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
++++|.+.+. +..+..+++|+++++++|.++ .+|..+..+++|+.+++++|++.
T Consensus 197 ~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 197 DLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 8888777743 444677788888888888877 34666777788888888888776
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=107.61 Aligned_cols=132 Identities=20% Similarity=0.160 Sum_probs=88.9
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccC--C--CcCCcCCCCCCEEEeeccccccCcch----hhc
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK--I--PSTLSNCKRLRNISLSLDDFSGTIPK----EIG 72 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~--~~~~~~~~~L~~l~l~~~~~~~~~~~----~~~ 72 (140)
+++|++|++++|.+. .++...+..+++|++|++++|.+.+. . +..+..+++|+.|++++|.++ ..+. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 357777888887774 44444446778888888888876521 1 222345677777777777775 2222 245
Q ss_pred cCCCccEEEecCCcccccCChhccCC---CCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 73 NVTKLIRLYLRGNQLQGEIPEELGNL---AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 73 ~~~~L~~l~l~~~~~~~~~~~~~~~~---~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
.+++|+.|++++|.+.+..|..+..+ ++|+++++++|.++ .+|..+. ++|+.|++++|.+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 67888888888888887666666555 68888888888887 4455443 677777777777765
No 91
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=2.6e-17 Score=115.88 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=98.6
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccC-cchhhccCCCccE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT-IPKEIGNVTKLIR 79 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~ 79 (140)
+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.++.. .+..+..+++|+.
T Consensus 49 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 49 CANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 467888999998886 44444447788899999998888865555678888888888888888742 3566777888888
Q ss_pred EEecCCcccccC-ChhccCCCCCcEEecccccccccCcccccC------------------------CCCCCeEEcCCCc
Q 032459 80 LYLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIPSSIFN------------------------LSSLSNLDLSVNN 134 (140)
Q Consensus 80 l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~------------------------~~~L~~l~l~~n~ 134 (140)
+++++|...+.. +..+..+++|+++++++|.+++..+..+.. +++|+.|++++|.
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 888888743333 356777888888888888877665655544 4566666666666
Q ss_pred cce
Q 032459 135 LTG 137 (140)
Q Consensus 135 ~~~ 137 (140)
+++
T Consensus 208 l~~ 210 (549)
T 2z81_A 208 LAR 210 (549)
T ss_dssp CTT
T ss_pred ccc
Confidence 554
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=3.7e-17 Score=114.01 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=78.2
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcch------------
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK------------ 69 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~------------ 69 (140)
++|+.|++++|.+. .++...+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+.
T Consensus 34 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 34 WNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp GGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 47888888888886 4444444778888888888888875444 66777777777777766522110
Q ss_pred ----hhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCccccc-CCCCCCeEEcCCCccc
Q 032459 70 ----EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136 (140)
Q Consensus 70 ----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~n~~~ 136 (140)
....+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+. .+++|+.|++++|.++
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 001234455555555555544444555555566666666655554444443 4455555555555444
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.6e-16 Score=101.85 Aligned_cols=123 Identities=27% Similarity=0.363 Sum_probs=60.5
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.|++++|.+. .++ . +..+++|++|++++|.+++. +. +..+++|+.|++++|.++. .+.. .. ++|+.|+
T Consensus 41 ~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF 112 (263)
T ss_dssp TTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred CcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence 45666666666553 444 2 24566666666666666532 22 5556666666666665553 2211 11 4455555
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
+++|.+.+. ..+..+++|+++++++|.+++. ..+..+++|+.|++++|.++
T Consensus 113 L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 113 LDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred ccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 555544421 2344444555555555544432 13444444444444444443
No 94
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=2e-16 Score=95.91 Aligned_cols=112 Identities=24% Similarity=0.243 Sum_probs=98.2
Q ss_pred CCCcccEEEccCCccc-cCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459 25 HLSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (140)
Q Consensus 25 ~l~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 103 (140)
..+++++|++++|.++ +.+|..+..+++|+.|++++|.++.. ..+..+++|+.+++++|.+.+..|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3578999999999998 67788888999999999999999854 77888999999999999998767777778999999
Q ss_pred EecccccccccCc-ccccCCCCCCeEEcCCCcccee
Q 032459 104 LWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 104 l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++++|.+++... ..+..+++|+.|++++|.+++.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 9999999986432 7788999999999999998754
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.7e-17 Score=114.69 Aligned_cols=130 Identities=22% Similarity=0.135 Sum_probs=70.9
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCc-CCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
++|+.|++++|.+.+..|..+ ..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++. + ....+++|+.|
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L 196 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL 196 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred CCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEE
Confidence 344555555555432222222 4455566666666655554444443 455566666666655532 1 12235566666
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
++++|.+.+. |..+..+++|+.+++++|.+++ +|..+..+++|+.+++++|++.
T Consensus 197 ~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 197 DLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred ECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 6666666543 3335566666666666666663 4555666666777777766654
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=3.1e-16 Score=103.57 Aligned_cols=125 Identities=23% Similarity=0.445 Sum_probs=67.3
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.|++++|.+. .++. +..+++|++|++++|.+++ . ..+..+++|+.|++++|.++.. + .+..+++|+.|+
T Consensus 63 ~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~ 135 (308)
T 1h6u_A 63 NNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLY 135 (308)
T ss_dssp TTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEE
T ss_pred CCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEE
Confidence 45666666666553 3333 3556666666666666552 2 2355556666666666665532 2 255555666666
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
+++|.+.+..+ +..+++|+++++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 66665543222 4455556666666665553222 5555566666666655543
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=3e-16 Score=111.85 Aligned_cols=124 Identities=28% Similarity=0.483 Sum_probs=57.5
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
|++|+.|++++|.+. .++. +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.. ...+..+++|+.|
T Consensus 64 l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L 136 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESL 136 (605)
T ss_dssp CTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC--CGGGGGCTTCSEE
T ss_pred CCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC--CccccCCCccCEE
Confidence 345566666666553 2222 2445555555555555542 22 34455555555555555542 1234444455555
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 5555544422 334444444444444444443222 33444444444444433
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.6e-16 Score=101.86 Aligned_cols=126 Identities=23% Similarity=0.362 Sum_probs=106.1
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+. .++. +..+++|++|++++|.+++ ++.. .. ++|+.|++++|.++.. +.+..+++|+.|
T Consensus 62 l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L 133 (263)
T 1xeu_A 62 FTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEIL 133 (263)
T ss_dssp CTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEE
T ss_pred CCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEE
Confidence 578999999999985 5555 5789999999999999984 4443 23 8999999999999853 458889999999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
++++|++.+. ..+..+++|+++++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 134 ~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 134 SIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999999854 3678899999999999999866 6788899999999999987653
No 99
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=2.8e-16 Score=97.40 Aligned_cols=109 Identities=20% Similarity=0.252 Sum_probs=97.6
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++++.|++++|.+. .+|.. +..+++|+.|++++|.++...+..|..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCc-hhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 47899999999985 78854 48899999999999999977778899999999999999999977778899999999999
Q ss_pred ecCCcccccCChhccCCCCCcEEeccccccc
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLT 112 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 112 (140)
+++|.+....+..+..+++|+.+++++|++.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999999666667888999999999999885
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2.6e-16 Score=103.20 Aligned_cols=126 Identities=27% Similarity=0.339 Sum_probs=107.5
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|+.|++++|.++. ...+..+++|+.|+
T Consensus 46 ~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEEE
T ss_pred CcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCEEE
Confidence 57899999999885 5543 3679999999999999985433 8899999999999999974 34488899999999
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++|.+.+. ..+..+++|+.+++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 999999853 5678899999999999999855 6788999999999999988764
No 101
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=3.4e-17 Score=118.92 Aligned_cols=119 Identities=25% Similarity=0.353 Sum_probs=99.4
Q ss_pred CCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccC
Q 032459 18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGN 97 (140)
Q Consensus 18 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 97 (140)
++...+..++.|+.|+|++|.+. .+|..+..+++|+.|++++|.++ ..|..+..+++|+.|++++|.+. ..|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34445577889999999999998 77777778999999999999998 77888899999999999999998 66888899
Q ss_pred CCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459 98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 98 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
+++|++|++++|.++ .+|..++.+++|+.|++++|.+++.+|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 999999999999987 667779999999999999999887543
No 102
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=5.5e-16 Score=94.70 Aligned_cols=112 Identities=22% Similarity=0.294 Sum_probs=97.1
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.++
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 57899999999985 67776668899999999999999966666678999999999999999966666788899999999
Q ss_pred ecCCcccccCChhccCCCCCcEEeccccccccc
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 114 (140)
+++|.+.+..+..+..+++|+++++++|+++..
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 999999866556678899999999999998754
No 103
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=4.4e-16 Score=107.98 Aligned_cols=126 Identities=26% Similarity=0.383 Sum_probs=58.5
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.|++++|.+.+. +. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+....+ +..+++|+.++
T Consensus 243 ~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 243 TNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp TTCSEEECCSSCCCCC-GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCEEECCCCccccc-hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 3444445544444321 11 2344555555555555542211 4445555555555555542211 44455555555
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
+++|.+.+..+ +..+++|+.+++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence 55555543322 34445555555555554432 2344455555555555555443
No 104
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=5.4e-18 Score=123.04 Aligned_cols=114 Identities=25% Similarity=0.467 Sum_probs=102.7
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+. .+|..++ .++.|+.|+|++|.++ .+|..+..+++|+.|++++|.++ ..|..+..+++|+.|
T Consensus 223 l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 223 DQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred CCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 467899999999985 8888875 7999999999999999 88999999999999999999999 678899999999999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccc
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 119 (140)
++++|.+. ..|..+..+++|++|++++|.+++..|..+
T Consensus 299 ~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 299 YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 99999997 668789999999999999999987666554
No 105
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.68 E-value=8.4e-16 Score=93.47 Aligned_cols=106 Identities=21% Similarity=0.311 Sum_probs=77.5
Q ss_pred ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459 4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (140)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 83 (140)
.+.++++++.+. .+|..+ .+.+++|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 356777777764 567655 3677888888888876667777778888888888888775555566777888888888
Q ss_pred CCcccccCChhccCCCCCcEEecccccccc
Q 032459 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTR 113 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 113 (140)
+|++.+..+..+..+++|+++++++|+++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 888775555567777788888888887753
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=1e-15 Score=109.13 Aligned_cols=127 Identities=24% Similarity=0.361 Sum_probs=108.7
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
|++|+.|++++|.+. .++ . +..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.++.. ..+..+++|+.|
T Consensus 86 l~~L~~L~Ls~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 158 (605)
T 1m9s_A 86 LKNLGWLFLDENKIK-DLS-S-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 158 (605)
T ss_dssp CTTCCEEECCSSCCC-CCT-T-STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE
T ss_pred CCCCCEEECcCCCCC-CCh-h-hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE
Confidence 578999999999985 444 3 3779999999999999984 3 4578899999999999999854 678899999999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (140)
++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 159 ~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 159 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred ECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 999999986555 88899999999999999854 4688999999999999987653
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1e-15 Score=108.50 Aligned_cols=122 Identities=22% Similarity=0.229 Sum_probs=92.8
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
.|+.|++++|.+. .+|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ .| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 4677888888775 4665 467888888888888888 778888888888888888888874 45 6778888888888
Q ss_pred cCCcccccC-ChhccCCCCCcEEecccccccccCcc---cccCCCCCCeEEc
Q 032459 83 RGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIPS---SIFNLSSLSNLDL 130 (140)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l 130 (140)
++|.+.+.. |..+..+++|+.+++++|.+++..+. .+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888888665 77788888888888888888755432 2334778887753
No 108
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=4.8e-16 Score=102.98 Aligned_cols=110 Identities=18% Similarity=0.129 Sum_probs=85.3
Q ss_pred CCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhc-cCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG-NVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (140)
Q Consensus 25 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 103 (140)
.+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+. .++.|+.+++++|.+.+. + ....+++|++
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~ 195 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKT 195 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCE
T ss_pred ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCE
Confidence 356788888888888866666777888899999999888865555553 678899999999888744 2 2234788999
Q ss_pred EecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 104 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
+++++|.+++. +..+..+++|+.|++++|.+++
T Consensus 196 L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 196 LDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp EECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE
T ss_pred EECCCCcCCcc-hhhhcccCcccEEECcCCcccc
Confidence 99999998854 4448888999999999998764
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=9.6e-18 Score=111.65 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=39.0
Q ss_pred CCceEEEccCCeeccc-CCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc-ccccC-cchhhccCCCcc
Q 032459 2 SSLLSIRFTNNTLFGE-LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD-DFSGT-IPKEIGNVTKLI 78 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~~L~ 78 (140)
++|+.|++++|.+.+. ++.. +..+++|++|++++|.+++..+..+..+++|+.|++++| .++.. .+..+..+++|+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHH-HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCEEEccCCCcCHHHHHHH-HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 4455555555554322 2222 244555555555555555444444444555555555555 33321 223334444455
Q ss_pred EEEecCC
Q 032459 79 RLYLRGN 85 (140)
Q Consensus 79 ~l~l~~~ 85 (140)
.|++++|
T Consensus 172 ~L~l~~~ 178 (336)
T 2ast_B 172 ELNLSWC 178 (336)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 5555444
No 110
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.65 E-value=2.6e-15 Score=91.65 Aligned_cols=104 Identities=20% Similarity=0.304 Sum_probs=76.9
Q ss_pred eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecC
Q 032459 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (140)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 84 (140)
+.++++++.+ +.+|..+ .+.|++|++++|.+++..|..|..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus 15 ~~l~~~~n~l-~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCC-CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4567777776 4677765 36788888888888866677777788888888888888755445567778888888888
Q ss_pred CcccccCChhccCCCCCcEEeccccccc
Q 032459 85 NQLQGEIPEELGNLAELEMLWLQNNFLT 112 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 112 (140)
|.+.+..+..+..+++|+++++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8887554455777788888888888775
No 111
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=1.7e-15 Score=105.06 Aligned_cols=126 Identities=26% Similarity=0.450 Sum_probs=107.5
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|+.|++++|.+. .++. +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.+
T Consensus 264 l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 264 LTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp CTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred CCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 478999999999986 4444 4779999999999999985433 7789999999999999986544 6789999999
Q ss_pred EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++++|.+.+. ..+..+++|+.+++++|.+++..| +..+++|+.+++++|.+++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999998854 567889999999999999987665 8889999999999998876
No 112
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.65 E-value=2.9e-15 Score=91.07 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=92.3
Q ss_pred cccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecc
Q 032459 28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ 107 (140)
Q Consensus 28 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~ 107 (140)
..+.+++++++++ .+|..+ .+.++.|++++|.++...+..+..+++|+.|++++|++.+..+..+..+++|++++++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678999999998 577665 3789999999999997778888999999999999999986666777889999999999
Q ss_pred cccccccCcccccCCCCCCeEEcCCCccce
Q 032459 108 NNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
+|.++...+..+..+++|+.|++++|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999987766778899999999999998754
No 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=7.1e-15 Score=89.70 Aligned_cols=106 Identities=20% Similarity=0.242 Sum_probs=89.3
Q ss_pred ccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEeccc
Q 032459 29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN 108 (140)
Q Consensus 29 L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 108 (140)
-+.+++++++++ .+|..+. +.++.|++++|.++...+..+..+++|+.|++++|++.+..+..+..+++|+++++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 477899999987 6777654 7899999999999877778888999999999999999866556678889999999999
Q ss_pred ccccccCcccccCCCCCCeEEcCCCccce
Q 032459 109 NFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
|.++...+..+..+++|+.|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99986666668889999999999998753
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=4.3e-18 Score=105.88 Aligned_cols=109 Identities=26% Similarity=0.288 Sum_probs=59.3
Q ss_pred cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 103 (140)
..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ ..|..+..+++|+.+++++|++.+. + .+..+++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~ 119 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRV 119 (198)
T ss_dssp HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSE
T ss_pred hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCE
Confidence 445566666666666653 44 4555566666666666655 3444444455566666666655531 2 3445555666
Q ss_pred EecccccccccCc-ccccCCCCCCeEEcCCCccce
Q 032459 104 LWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 104 l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~ 137 (140)
+++++|.+++..+ ..+..+++|+++++++|++++
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 6666665543221 345555566666666665543
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=4.9e-15 Score=105.01 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=97.4
Q ss_pred cccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecc
Q 032459 28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ 107 (140)
Q Consensus 28 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~ 107 (140)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ ..|..+..+++|+.|++++|.+++ .| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58899999999984 676 889999999999999999 778899999999999999999985 45 78899999999999
Q ss_pred cccccccC-cccccCCCCCCeEEcCCCccceec
Q 032459 108 NNFLTRAI-PSSIFNLSSLSNLDLSVNNLTGSL 139 (140)
Q Consensus 108 ~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~ 139 (140)
+|.+++.. |..++.+++|+.|++++|.+++..
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 99999776 899999999999999999998754
No 116
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=8.2e-17 Score=107.15 Aligned_cols=132 Identities=26% Similarity=0.346 Sum_probs=68.2
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCC-ccccC-CCcCCcCCCCCCEEEeecc-ccccC-cchhhccCC-
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNN-MFHGK-IPSTLSNCKRLRNISLSLD-DFSGT-IPKEIGNVT- 75 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~- 75 (140)
+++|++|++++|.+.+..+..+ ..+++|++|++++| .+++. .+..+..+++|+.|++++| .++.. .+..+..++
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred CCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 3566677777766544444433 44666666666666 45431 3333445566666666666 55422 233444555
Q ss_pred CccEEEecCCc--cc-ccCChhccCCCCCcEEeccccc-ccccCcccccCCCCCCeEEcCCC
Q 032459 76 KLIRLYLRGNQ--LQ-GEIPEELGNLAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 76 ~L~~l~l~~~~--~~-~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n 133 (140)
+|+.+++++|. ++ +..+..+..+++|+.+++++|. +++..+..+..+++|+.|++++|
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55555555552 22 1223333445555555555555 44444444455555555555554
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=3e-16 Score=105.71 Aligned_cols=109 Identities=21% Similarity=0.208 Sum_probs=51.6
Q ss_pred CceEEEccCCeecccCCc----ccccCCC-cccEEEccCCccccCCCcCCcCC-----CCCCEEEeeccccccCcchhhc
Q 032459 3 SLLSIRFTNNTLFGELPP----NFCNHLS-NLESLFLKNNMFHGKIPSTLSNC-----KRLRNISLSLDDFSGTIPKEIG 72 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~~~ 72 (140)
+|++|++++|.+. ..+. ..+..++ +|++|++++|.+++..+..+..+ ++|+.|++++|.++...+..+.
T Consensus 23 ~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 3566666666653 2222 2224455 56666666666654444434332 5555666655555543333222
Q ss_pred ----cC-CCccEEEecCCcccccCChhcc----C-CCCCcEEeccccccc
Q 032459 73 ----NV-TKLIRLYLRGNQLQGEIPEELG----N-LAELEMLWLQNNFLT 112 (140)
Q Consensus 73 ----~~-~~L~~l~l~~~~~~~~~~~~~~----~-~~~l~~l~l~~~~~~ 112 (140)
.. ++|+.|++++|.+.+..+..+. . .++|+++++++|.++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 22 4555555555555433332221 1 234555555555444
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=1.5e-16 Score=107.88 Aligned_cols=137 Identities=20% Similarity=0.242 Sum_probs=100.9
Q ss_pred CCceEEEccCCeec-ccCCc--ccccCCCcccEEEccCCcccc-----CCCcCCcCCCCCCEEEeeccccc----cCcch
Q 032459 2 SSLLSIRFTNNTLF-GELPP--NFCNHLSNLESLFLKNNMFHG-----KIPSTLSNCKRLRNISLSLDDFS----GTIPK 69 (140)
Q Consensus 2 ~~L~~L~l~~~~~~-~~~~~--~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~~~~~L~~l~l~~~~~~----~~~~~ 69 (140)
++|++|++++|.+. ..++. ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ...+.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 57888888888775 22331 223567788889998888772 23336677888999999999885 35567
Q ss_pred hhccCCCccEEEecCCccccc----CChhcc--CCCCCcEEecccccccc----cCcccc-cCCCCCCeEEcCCCcccee
Q 032459 70 EIGNVTKLIRLYLRGNQLQGE----IPEELG--NLAELEMLWLQNNFLTR----AIPSSI-FNLSSLSNLDLSVNNLTGS 138 (140)
Q Consensus 70 ~~~~~~~L~~l~l~~~~~~~~----~~~~~~--~~~~l~~l~l~~~~~~~----~~~~~~-~~~~~L~~l~l~~n~~~~~ 138 (140)
.+..+++|+.|++++|.+.+. .+..+. .+++|+++++++|.++. .++..+ .++++|+.|++++|.+++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 777888999999999988754 234443 37889999999999886 356555 5678999999999988764
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=2.8e-17 Score=102.21 Aligned_cols=129 Identities=21% Similarity=0.289 Sum_probs=106.0
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 80 (140)
+++|++|++++|.+. .+| . +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ .+ .+..+++|+.+
T Consensus 47 l~~L~~L~ls~n~l~-~l~-~-~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 47 LKACKHLALSTNNIE-KIS-S-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL 120 (198)
T ss_dssp TTTCSEEECSEEEES-CCC-C-HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred CCCCCEEECCCCCCc-ccc-c-cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence 478999999999986 477 4 477899999999999998 677777777999999999999984 44 67788999999
Q ss_pred EecCCcccccCC-hhccCCCCCcEEecccccccccCcc----------cccCCCCCCeEEcCCCccce
Q 032459 81 YLRGNQLQGEIP-EELGNLAELEMLWLQNNFLTRAIPS----------SIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 81 ~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~----------~~~~~~~L~~l~l~~n~~~~ 137 (140)
++++|.+.+..+ ..+..+++|+++++++|.+++..+. .+..+++|+.|+ ++.+++
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999999875332 4678899999999999999765443 367889999987 666654
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=9.7e-17 Score=108.83 Aligned_cols=41 Identities=32% Similarity=0.336 Sum_probs=17.9
Q ss_pred ccCCCCCcEEeccccccc----ccCcccccCCCCCCeEEcCCCcc
Q 032459 95 LGNLAELEMLWLQNNFLT----RAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 95 ~~~~~~l~~l~l~~~~~~----~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
+..+++|++|++++|.++ ..++..+..+++|+.|++++|.+
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 334444444444444443 22333334444444444444444
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=1e-14 Score=89.03 Aligned_cols=109 Identities=20% Similarity=0.177 Sum_probs=91.4
Q ss_pred cCCCcccEEEccCCccccCCCcCCcCCC-CCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCc
Q 032459 24 NHLSNLESLFLKNNMFHGKIPSTLSNCK-RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~ 102 (140)
..+++|++|++++|.++ .++. +..+. +|+.|++++|.++.. ..+..+++|+.+++++|.+.+..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 46789999999999998 4554 44544 999999999999854 6788899999999999999865445568899999
Q ss_pred EEecccccccccCcc--cccCCCCCCeEEcCCCccce
Q 032459 103 MLWLQNNFLTRAIPS--SIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 103 ~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~ 137 (140)
++++++|.++. .+. .+..+++|+.+++++|++++
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC
Confidence 99999999964 344 78899999999999999864
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=5.4e-16 Score=104.44 Aligned_cols=112 Identities=26% Similarity=0.313 Sum_probs=51.3
Q ss_pred CceEEEccCCeecccCCcccc---cC-CCcccEEEccCCccccCCCcCCc----CC-CCCCEEEeeccccccCcchhhc-
Q 032459 3 SLLSIRFTNNTLFGELPPNFC---NH-LSNLESLFLKNNMFHGKIPSTLS----NC-KRLRNISLSLDDFSGTIPKEIG- 72 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~---~~-l~~L~~L~l~~~~l~~~~~~~~~----~~-~~L~~l~l~~~~~~~~~~~~~~- 72 (140)
+|++|++++|.+.+..+..+. .. .+.|++|++++|.+++..+..+. .+ ++|+.|++++|.++...+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 566666666665433222221 11 25666666666666543333222 22 4566666666555543332222
Q ss_pred ---c-CCCccEEEecCCcccccCChh----ccCCC-CCcEEeccccccccc
Q 032459 73 ---N-VTKLIRLYLRGNQLQGEIPEE----LGNLA-ELEMLWLQNNFLTRA 114 (140)
Q Consensus 73 ---~-~~~L~~l~l~~~~~~~~~~~~----~~~~~-~l~~l~l~~~~~~~~ 114 (140)
. ..+|+.|++++|.+.+..... +...+ +|+++++++|.+++.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 1 135555555555554322222 12222 455555555554433
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.1e-14 Score=103.24 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=67.9
Q ss_pred CCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCC----
Q 032459 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL---- 101 (140)
Q Consensus 26 l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l---- 101 (140)
+++|+.|++++|.+++ +|. .+++|+.|++++|.++. .|. +. ++|+.|++++|.++ ..|. +.. +|
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~ 206 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSE 206 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------
T ss_pred CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccc
Confidence 4455555565555553 333 34567777777777664 444 43 67788888888777 4444 332 56
Q ss_pred ---cEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459 102 ---EMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140 (140)
Q Consensus 102 ---~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (140)
+.+++++|.++ .+|..+..+++|+.|++++|++++.+|
T Consensus 207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 88899999887 467777779999999999999887543
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.57 E-value=5.7e-14 Score=97.32 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=77.0
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
++|+.|++++|.+. .+| . +..+++|++|++++|.+++ ++ +..+++|+.|++++|.+++. + +..+++|+.++
T Consensus 42 ~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 57788888888775 344 3 3667788888888888774 33 66777788888887777643 2 56677777777
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCC
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 133 (140)
+++|.+.+. + +..+++|+++++++|.+++. + +..+++|+++++++|
T Consensus 113 L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 113 CDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLN 158 (457)
T ss_dssp CCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTC
T ss_pred CCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCC
Confidence 777777643 2 55667777777777776643 1 344444455544444
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.56 E-value=5.2e-14 Score=97.51 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=7.9
Q ss_pred CCceEEEccCCeec
Q 032459 2 SSLLSIRFTNNTLF 15 (140)
Q Consensus 2 ~~L~~L~l~~~~~~ 15 (140)
++|++|++++|.+.
T Consensus 127 ~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 127 PLLTYLNCARNTLT 140 (457)
T ss_dssp TTCCEEECTTSCCS
T ss_pred CcCCEEECCCCccc
Confidence 45556666665553
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=1.1e-13 Score=98.07 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=23.1
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~ 64 (140)
+++.|++++|.+. .+|..+ +++|+.|++++|.++ .+| ..+++|+.|++++|.++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS 113 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC
Confidence 3445555555443 244433 134444444444444 333 12334444444444443
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=1.8e-16 Score=109.51 Aligned_cols=87 Identities=23% Similarity=0.333 Sum_probs=51.4
Q ss_pred CCCCEEEeeccccccC----cchhhccCCCccEEEecCCcccccCChhccC-----CCCCcEEecccccccc----cCcc
Q 032459 51 KRLRNISLSLDDFSGT----IPKEIGNVTKLIRLYLRGNQLQGEIPEELGN-----LAELEMLWLQNNFLTR----AIPS 117 (140)
Q Consensus 51 ~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-----~~~l~~l~l~~~~~~~----~~~~ 117 (140)
++|+.|++++|.++.. .+..+..+++|+.+++++|.+.+..+..+.. .++|+++++++|.+++ ..+.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 3555555555555432 2333444567777777777665443333321 4577777777777764 4455
Q ss_pred cccCCCCCCeEEcCCCccce
Q 032459 118 SIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 118 ~~~~~~~L~~l~l~~n~~~~ 137 (140)
.+..+++|++|++++|.+++
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCH
T ss_pred HHHhCCCccEEECCCCCCCH
Confidence 56667777777777777654
No 128
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=7.6e-16 Score=104.17 Aligned_cols=136 Identities=17% Similarity=0.110 Sum_probs=90.5
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCC-----cCCCCCCEEEeeccccccC----cchhhc
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTL-----SNCKRLRNISLSLDDFSGT----IPKEIG 72 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-----~~~~~L~~l~l~~~~~~~~----~~~~~~ 72 (140)
++|++|++++|.+.+.....+...+++|+.|++++|.+++.....+ ...++|+.|++++|.++.. .+..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3677777777766433333333445677788888887764333333 2357788888888887642 233445
Q ss_pred cCCCccEEEecCCcccccC----ChhccCCCCCcEEecccccccccC----cccccCCCCCCeEEcCCCccce
Q 032459 73 NVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 73 ~~~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
..++|+.|++++|.+.+.. ...+...++|+.|++++|.+++.. +..+...++|++|++++|.+++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 6778888888888876433 344566778888999888887533 2344456888999999888764
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=2.3e-13 Score=91.33 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=81.8
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCC-cCCcCCCCCCE-EEeeccccccCcchhhccCCCccE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRN-ISLSLDDFSGTIPKEIGNVTKLIR 79 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~-l~l~~~~~~~~~~~~~~~~~~L~~ 79 (140)
+++++|++++|.+. .+|...|..+++|++|++++|.+.+.++ ..|..+++++. +.+..|.+....+..+..+++|+.
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 46788888888874 7777767888888888888888754444 45666777665 445567777566677778888888
Q ss_pred EEecCCcccccCChhccCCCCCcEEecccc-cccccCcccccCCC-CCCeEEcCCCccc
Q 032459 80 LYLRGNQLQGEIPEELGNLAELEMLWLQNN-FLTRAIPSSIFNLS-SLSNLDLSVNNLT 136 (140)
Q Consensus 80 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~-~L~~l~l~~n~~~ 136 (140)
+++++|++....+..+....++..+++.++ .+....+..+..+. .++.|++++|.++
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 888888776443333333334444444332 23322222333322 3455555555443
No 130
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=3.3e-15 Score=103.15 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=14.5
Q ss_pred ccEEEccCCcccc----CCCcCCcCCCCCCEEEeecccc
Q 032459 29 LESLFLKNNMFHG----KIPSTLSNCKRLRNISLSLDDF 63 (140)
Q Consensus 29 L~~L~l~~~~l~~----~~~~~~~~~~~L~~l~l~~~~~ 63 (140)
|++|++++|.+++ .++..+..+++|+.|++++|.+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 4444444444432 1233333444444444444444
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=1.6e-13 Score=92.08 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=96.2
Q ss_pred CCCceEEEccCCeecccCCcccccCCCcccE-EEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCC----
Q 032459 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLES-LFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVT---- 75 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~---- 75 (140)
|++|++|++++|.+.+.++...|..++++.+ +.+..|.++...+..|..+++|+.+++++|.+....+..+....
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence 5789999999999877888888888888776 56677888877778888899999999999888643222222222
Q ss_pred ----------------------CccEEEecCCcccccCChhccCCCCCcEEeccc-ccccccCcccccCCCCCCeEEcCC
Q 032459 76 ----------------------KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN-NFLTRAIPSSIFNLSSLSNLDLSV 132 (140)
Q Consensus 76 ----------------------~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~ 132 (140)
.++.+++++|+++.. +.......+++++++.+ |.++...++.+..+++|++|++++
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hhhccccccccccccchhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 355566666666532 33333445677777764 455544446778889999999999
Q ss_pred Cccc
Q 032459 133 NNLT 136 (140)
Q Consensus 133 n~~~ 136 (140)
|.++
T Consensus 212 N~l~ 215 (350)
T 4ay9_X 212 TRIH 215 (350)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9875
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.49 E-value=3.6e-13 Score=96.38 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=64.1
Q ss_pred CCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEc
Q 032459 51 KRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130 (140)
Q Consensus 51 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 130 (140)
++|+.|++++|.+++ .| ..+++|+.|++++|.+. ..|. .+++|+.+++++|.++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 667888888887773 34 34578889999998887 3344 5688999999999998 66888999999999999
Q ss_pred CCCccceec
Q 032459 131 SVNNLTGSL 139 (140)
Q Consensus 131 ~~n~~~~~~ 139 (140)
++|++++.+
T Consensus 292 ~~N~l~~~~ 300 (622)
T 3g06_A 292 EGNPLSERT 300 (622)
T ss_dssp CSCCCCHHH
T ss_pred cCCCCCCcC
Confidence 999987654
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.48 E-value=8e-13 Score=91.55 Aligned_cols=120 Identities=27% Similarity=0.364 Sum_probs=64.9
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
+|++|++++|.+. .+| . +..+++|++|++++|.+++ +|..+ ++|+.|++++|.+++ .| .+..+++|+.+++
T Consensus 132 ~L~~L~L~~n~l~-~lp-~-~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLE-KLP-E-LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCS-SCC-C-CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCEEECcCCCCC-CCc-c-cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 5566666666654 355 2 3556666666666666652 33322 356666666666553 33 3555666666666
Q ss_pred cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
++|.+.+ .|.. .++++++++++|.++ .+| .++.+++|+.|++++|.+++
T Consensus 203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 203 DNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc
Confidence 6666553 2211 134555555555554 333 25555666666666665543
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.48 E-value=2.9e-13 Score=90.57 Aligned_cols=103 Identities=24% Similarity=0.285 Sum_probs=74.2
Q ss_pred EEEccCC-eecccCCcccccCCCcccEEEccC-CccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459 6 SIRFTNN-TLFGELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (140)
Q Consensus 6 ~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 83 (140)
.++.+++ .+ ..+|. + ..+++|++|+|++ |.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|+++
T Consensus 12 ~v~~~~~n~l-~~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGAL-DSLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCC-TTTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCC-CccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3566666 55 36777 3 6677888888885 88876666677788888888888888876666777788888888888
Q ss_pred CCcccccCChhccCCCCCcEEeccccccc
Q 032459 84 GNQLQGEIPEELGNLAELEMLWLQNNFLT 112 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 112 (140)
+|++.+..+..+..+. |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888754444444444 888888888775
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.43 E-value=3.2e-12 Score=88.57 Aligned_cols=117 Identities=26% Similarity=0.356 Sum_probs=54.9
Q ss_pred CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (140)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 82 (140)
+|++|++++|.+.+ +|.. +++|++|++++|.+++ ++.. .++|+.|++++|.+++ .| .+..+++|+.+++
T Consensus 92 ~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 45555555555432 3321 2344444444444442 1111 1355555555555553 33 3555555566666
Q ss_pred cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
++|.+.+ .|.. ..+|+++++++|.+++ .| .+..+++|+.+++++|.++
T Consensus 161 ~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 161 DNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred CCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 5555542 2221 2345555555555543 22 3455555555555555444
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.43 E-value=9.7e-13 Score=88.01 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=73.0
Q ss_pred EEEccCC-ccccCCCcCCcCCCCCCEEEeec-cccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEeccc
Q 032459 31 SLFLKNN-MFHGKIPSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN 108 (140)
Q Consensus 31 ~L~l~~~-~l~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 108 (140)
.++..++ +++ .+|. +..+.+|+.|++++ |.++...+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566666 676 5666 77777788888875 777755556777777888888888877766667777777888888888
Q ss_pred ccccccCcccccCCCCCCeEEcCCCccc
Q 032459 109 NFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (140)
|.++...+..+..++ |+.|++.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 877755444444444 778888777664
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.39 E-value=6.2e-12 Score=90.09 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=14.5
Q ss_pred CcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459 27 SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64 (140)
Q Consensus 27 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~ 64 (140)
++|++|++++|.++ .+|. .+++|+.|++++|.++
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 44444444444444 2222 2344444444444443
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=4.5e-14 Score=95.53 Aligned_cols=136 Identities=18% Similarity=0.129 Sum_probs=100.6
Q ss_pred CCceEEEccCCeecccCC----cccccCCCcccEEEccCCccccCCCcCCc-CCCCCCEEEeeccccccCcchhhc----
Q 032459 2 SSLLSIRFTNNTLFGELP----PNFCNHLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIG---- 72 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~---- 72 (140)
++|+.|++++|.+..... ..+....+.|++|++++|.+++.....+. .+++|+.|++++|.++......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 578999999999853322 22222347999999999998754333332 356899999999999754444432
Q ss_pred -cCCCccEEEecCCcccccC----ChhccCCCCCcEEecccccccccC----cccccCCCCCCeEEcCCCccce
Q 032459 73 -NVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 73 -~~~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
..+.|+.|++++|.+++.. +..+...++|++|++++|.+++.. +..+...++|++|++++|.+++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 4578999999999987533 334467899999999999997543 4556677899999999999875
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=8.2e-12 Score=83.08 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=56.0
Q ss_pred CCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCc-EEecccccccccCcccccCCCCCCeE
Q 032459 50 CKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE-MLWLQNNFLTRAIPSSIFNLSSLSNL 128 (140)
Q Consensus 50 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~-~l~l~~~~~~~~~~~~~~~~~~L~~l 128 (140)
+++|+.+++..|.++...+.+|..+.+|+.+.+.++ +.......|..+.+|+ .+.+.. .++...+.+|..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 456777777776666555566777777777777765 5544456666777777 777766 5555556677777777777
Q ss_pred EcCCCcc
Q 032459 129 DLSVNNL 135 (140)
Q Consensus 129 ~l~~n~~ 135 (140)
+++.|.+
T Consensus 303 ~l~~n~i 309 (329)
T 3sb4_A 303 LATGDKI 309 (329)
T ss_dssp EECSSCC
T ss_pred EeCCCcc
Confidence 7766554
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.28 E-value=2.3e-13 Score=96.56 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=56.6
Q ss_pred CCCCCCEEEeeccc--cccCcchhhc-cCCCccEEEecCCcccccC-ChhccCCCCCcEEecccccccccC-cccccCCC
Q 032459 49 NCKRLRNISLSLDD--FSGTIPKEIG-NVTKLIRLYLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAI-PSSIFNLS 123 (140)
Q Consensus 49 ~~~~L~~l~l~~~~--~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~ 123 (140)
.+++|+.|+++.+. ++......+. .+++|+.|++++|.+++.. +..+..+++|++|++++|.+++.. +..+..++
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence 35566666665332 3322222232 3667888888888776433 334456788888888888876442 33445678
Q ss_pred CCCeEEcCCCcccee
Q 032459 124 SLSNLDLSVNNLTGS 138 (140)
Q Consensus 124 ~L~~l~l~~n~~~~~ 138 (140)
+|+.|++++|.+++.
T Consensus 514 ~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 514 SLRYLWVQGYRASMT 528 (592)
T ss_dssp SCCEEEEESCBCCTT
T ss_pred ccCeeECcCCcCCHH
Confidence 888888888887653
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=8.4e-11 Score=78.20 Aligned_cols=103 Identities=16% Similarity=0.024 Sum_probs=90.0
Q ss_pred CCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCcc-EEEecCCcccccCChhccCCCCCcEE
Q 032459 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLI-RLYLRGNQLQGEIPEELGNLAELEML 104 (140)
Q Consensus 26 l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~l~~l 104 (140)
+++|+.+++.+|.++...+..|..+.+|+.+++..| +....+.+|..+.+|+ .+.+.+ .+....+..|..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999898666778999999999999998 7656678899999999 999988 6665667889999999999
Q ss_pred ecccccccccCcccccCCCCCCeEEc
Q 032459 105 WLQNNFLTRAIPSSIFNLSSLSNLDL 130 (140)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~L~~l~l 130 (140)
++..|.++...+.+|..+++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999998888889999999999864
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.17 E-value=1.9e-11 Score=86.75 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=14.8
Q ss_pred CCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459 49 NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (140)
Q Consensus 49 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 83 (140)
.+++|+.|++.++.+.+ .+..+..+++|+.++++
T Consensus 218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 34445555555544432 23333344444444443
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.16 E-value=9.9e-13 Score=93.32 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCCCCCEEEeeccccccCcchhhcc-CCCccEEEecCCcccccCChhc-cCCCCCcEEecccccccccCcc-cccCCCCC
Q 032459 49 NCKRLRNISLSLDDFSGTIPKEIGN-VTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPS-SIFNLSSL 125 (140)
Q Consensus 49 ~~~~L~~l~l~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~L 125 (140)
.+++|+.|++++ .++......+.. +++|+.|++++|.+++..+..+ ..+++|+++++++|.+++.... .+..+++|
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 455666666654 343333333333 6778888888877765444444 4578888888888887544333 33457788
Q ss_pred CeEEcCCCccc
Q 032459 126 SNLDLSVNNLT 136 (140)
Q Consensus 126 ~~l~l~~n~~~ 136 (140)
+.|++++|.++
T Consensus 509 ~~L~l~~~~~~ 519 (594)
T 2p1m_B 509 RSLWMSSCSVS 519 (594)
T ss_dssp SEEEEESSCCB
T ss_pred CEEeeeCCCCC
Confidence 88888888764
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.05 E-value=2.5e-11 Score=74.61 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=86.5
Q ss_pred cCCCcccEEEccCC-ccccC----CCcCCcCCCCCCEEEeeccccccCc----chhhccCCCccEEEecCCcccccC---
Q 032459 24 NHLSNLESLFLKNN-MFHGK----IPSTLSNCKRLRNISLSLDDFSGTI----PKEIGNVTKLIRLYLRGNQLQGEI--- 91 (140)
Q Consensus 24 ~~l~~L~~L~l~~~-~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~--- 91 (140)
...+.|++|++++| .+.+. +...+...++|+.|++++|.+.... ...+...+.|+.|++++|.+.+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 56789999999999 88743 3344556789999999999987433 334455678999999999987543
Q ss_pred -ChhccCCCCCcEEec--ccccccccC----cccccCCCCCCeEEcCCCccce
Q 032459 92 -PEELGNLAELEMLWL--QNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 92 -~~~~~~~~~l~~l~l--~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~~ 137 (140)
...+...+.|+++++ ++|.+.+.. ...+...++|++|++++|.++.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 345667788999999 889987643 3445566899999999998753
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.02 E-value=2.8e-10 Score=76.73 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=28.1
Q ss_pred CCCccEEEecCCcccccCChhcc---CCCCCcEEecccccccccCc----ccccCCCCCCeEEcCCCccc
Q 032459 74 VTKLIRLYLRGNQLQGEIPEELG---NLAELEMLWLQNNFLTRAIP----SSIFNLSSLSNLDLSVNNLT 136 (140)
Q Consensus 74 ~~~L~~l~l~~~~~~~~~~~~~~---~~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~n~~~ 136 (140)
+++|+.|++.+|.+.+..+..+. .+++|++|+++.|.+++..+ ..+..+++|+.|+++.|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 34555555555544322211111 23455555555555543221 12233455566666555554
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.00 E-value=5.1e-11 Score=84.59 Aligned_cols=133 Identities=16% Similarity=0.191 Sum_probs=77.2
Q ss_pred CCCceEEEccCCeecccCC--------------cccccCCCcccEEEccCCccccCCCcCCc-CCCCCCEEEeecc-ccc
Q 032459 1 MSSLLSIRFTNNTLFGELP--------------PNFCNHLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLD-DFS 64 (140)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~--------------~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~-~~~ 64 (140)
+++|+.|++.++.....+. ..+...+++|++|++++|.+++..+..+. .+++|+.|++.+| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 4677788887765432221 11224567788888888777655444443 4677888888777 343
Q ss_pred cC-cchhhccCCCccEEEecCCcccccCChhcc----CCCCCcEEeccccc--cccc-CcccccCCCCCCeEEcCCC
Q 032459 65 GT-IPKEIGNVTKLIRLYLRGNQLQGEIPEELG----NLAELEMLWLQNNF--LTRA-IPSSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 65 ~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----~~~~l~~l~l~~~~--~~~~-~~~~~~~~~~L~~l~l~~n 133 (140)
.. .+.....+++|+.|++++|.+++..+..+. .+++|+.+++++|. ++.. .......+++|+.|++++|
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 22 223334577778888877776654433332 45677777777665 2111 1112234567777777665
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=1.6e-08 Score=69.10 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=44.5
Q ss_pred CcCCcCCCCCCEEEeeccccc-----cCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCccc
Q 032459 44 PSTLSNCKRLRNISLSLDDFS-----GTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118 (140)
Q Consensus 44 ~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 118 (140)
...|..+.+|+.+.+..+... ...+..|..+.+|+.+.+.+ .+.......|..+.+|+.+.+..+ ++.....+
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 444555555555555554332 12334455555555555553 233333344555566666666433 44344455
Q ss_pred ccCCCCCCeEEcCCCc
Q 032459 119 IFNLSSLSNLDLSVNN 134 (140)
Q Consensus 119 ~~~~~~L~~l~l~~n~ 134 (140)
|..+ +|+.+++.+|.
T Consensus 342 F~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSSS-CCCEEEECCSS
T ss_pred CCCC-CCCEEEEcCCC
Confidence 5555 66666666553
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.85 E-value=2.4e-09 Score=64.98 Aligned_cols=84 Identities=7% Similarity=0.087 Sum_probs=61.8
Q ss_pred CcccEEEccCCccccCCCcCCcCCCCCCEEEeeccc-cccCcchhhccC----CCccEEEecCCc-ccccCChhccCCCC
Q 032459 27 SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD-FSGTIPKEIGNV----TKLIRLYLRGNQ-LQGEIPEELGNLAE 100 (140)
Q Consensus 27 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~~~-~~~~~~~~~~~~~~ 100 (140)
..|+.||+++|.+++.....+..+++|+.|++++|. ++...-..++.+ ++|+.|++++|. +++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 368888888888887666667788888888888885 654444445543 368888888874 77665666777888
Q ss_pred CcEEeccccc
Q 032459 101 LEMLWLQNNF 110 (140)
Q Consensus 101 l~~l~l~~~~ 110 (140)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888876
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=6.6e-09 Score=70.10 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=87.7
Q ss_pred CCCceEEEccCCeec---------ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhh
Q 032459 1 MSSLLSIRFTNNTLF---------GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI 71 (140)
Q Consensus 1 l~~L~~L~l~~~~~~---------~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 71 (140)
+++|+.|.+...... +.+. .+...+|.|+.|.+.++.-. ..+. + .+++|+.|.+..+.+.......+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 368889988654221 0111 23367899999999987311 2333 3 37899999999888764333344
Q ss_pred c--cCCCccEEEecCC--cccccC-----Chhc--cCCCCCcEEecccccccccCccccc---CCCCCCeEEcCCCccce
Q 032459 72 G--NVTKLIRLYLRGN--QLQGEI-----PEEL--GNLAELEMLWLQNNFLTRAIPSSIF---NLSSLSNLDLSVNNLTG 137 (140)
Q Consensus 72 ~--~~~~L~~l~l~~~--~~~~~~-----~~~~--~~~~~l~~l~l~~~~~~~~~~~~~~---~~~~L~~l~l~~n~~~~ 137 (140)
. .+++|+.|+++.+ ...+.. ...+ ..+++|++|++.+|.+++..+..+. .+++|+.|+++.|.+++
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 3 6899999998632 211110 1122 2478999999999988754444443 57899999999998876
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=3.9e-08 Score=67.19 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=31.0
Q ss_pred hhhccCCCccEEEecCCccc-----ccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCC
Q 032459 69 KEIGNVTKLIRLYLRGNQLQ-----GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 69 ~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 133 (140)
.+|..+.+|+.+.+.++.+. ......|..+++|+.+.+.. .++.....+|..+++|+.+.+..+
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 34444555555555444332 12234444555555555552 244344455555666666665443
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.81 E-value=2.6e-09 Score=64.84 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=70.8
Q ss_pred CCCCCEEEeeccccccCcchhhccCCCccEEEecCCc-ccccCChhccCC----CCCcEEeccccc-ccccCcccccCCC
Q 032459 50 CKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ-LQGEIPEELGNL----AELEMLWLQNNF-LTRAIPSSIFNLS 123 (140)
Q Consensus 50 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~l~~l~l~~~~-~~~~~~~~~~~~~ 123 (140)
-..|+.|+++++.++...-..+..+++|+.|++++|. +++.....+... ++|++|++++|. +|+.....+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3579999999999886666777889999999999985 776655666653 479999999986 8876667778899
Q ss_pred CCCeEEcCCCc-cce
Q 032459 124 SLSNLDLSVNN-LTG 137 (140)
Q Consensus 124 ~L~~l~l~~n~-~~~ 137 (140)
+|+.|++++|+ +++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 99999999985 543
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.75 E-value=6.2e-10 Score=68.38 Aligned_cols=111 Identities=12% Similarity=0.117 Sum_probs=83.2
Q ss_pred CCceEEEccCC-eeccc----CCcccccCCCcccEEEccCCccccCC----CcCCcCCCCCCEEEeeccccccCc----c
Q 032459 2 SSLLSIRFTNN-TLFGE----LPPNFCNHLSNLESLFLKNNMFHGKI----PSTLSNCKRLRNISLSLDDFSGTI----P 68 (140)
Q Consensus 2 ~~L~~L~l~~~-~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~l~l~~~~~~~~~----~ 68 (140)
++|++|++++| .+... +...+ ...+.|++|++++|.+.+.. ...+...++|+.|++++|.++... .
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 67999999999 77533 22222 55789999999999998533 334455688999999999998532 4
Q ss_pred hhhccCCCccEEEe--cCCcccccCC----hhccCCCCCcEEecccccccc
Q 032459 69 KEIGNVTKLIRLYL--RGNQLQGEIP----EELGNLAELEMLWLQNNFLTR 113 (140)
Q Consensus 69 ~~~~~~~~L~~l~l--~~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~ 113 (140)
..+...+.|+.|++ ++|.+.+... ..+...+.|+++++++|.+..
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 55666789999999 8899875432 345567899999999998753
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.65 E-value=5.1e-08 Score=63.06 Aligned_cols=80 Identities=28% Similarity=0.385 Sum_probs=56.8
Q ss_pred CCCCCCEEEeecccccc--CcchhhccCCCccEEEecCCcccccC-ChhccCCCCCcEEecccccccccCc-------cc
Q 032459 49 NCKRLRNISLSLDDFSG--TIPKEIGNVTKLIRLYLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIP-------SS 118 (140)
Q Consensus 49 ~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~-------~~ 118 (140)
.++.|+.|++++|.+++ ..+..+..+++|+.|++++|.+.+.. ...+..+ +|+.|++.+|++++..+ ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 46788888888888875 23455667888889999888887541 1233333 88889999998876444 24
Q ss_pred ccCCCCCCeEE
Q 032459 119 IFNLSSLSNLD 129 (140)
Q Consensus 119 ~~~~~~L~~l~ 129 (140)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56788888776
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.55 E-value=9.1e-08 Score=61.90 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=61.3
Q ss_pred cCCCcccEEEccCCcccc--CCCcCCcCCCCCCEEEeeccccccCcchhhccCC--CccEEEecCCcccccCC-------
Q 032459 24 NHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVT--KLIRLYLRGNQLQGEIP------- 92 (140)
Q Consensus 24 ~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~------- 92 (140)
..+++|+.|+|++|.+++ .++..+..+++|+.|++++|.+.+. ..+..+. +|+.|.+.+|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457899999999999985 3445556799999999999999854 2333333 89999999999876554
Q ss_pred hhccCCCCCcEEe
Q 032459 93 EELGNLAELEMLW 105 (140)
Q Consensus 93 ~~~~~~~~l~~l~ 105 (140)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2355788898876
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.35 E-value=5e-06 Score=56.56 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=54.4
Q ss_pred cccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCC
Q 032459 20 PNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLA 99 (140)
Q Consensus 20 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 99 (140)
...|..+..|+.+.+..+... .....|..+..|+.+.+.. .+......+|..+.+|+.+.+..+ ++......|..+.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 344455566666666544332 3334455555566555542 233233445555555665555432 2223334455555
Q ss_pred CCcEEecccccccccCcccccCCCCCCeEEcCCC
Q 032459 100 ELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 100 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 133 (140)
+|+.+.+..+ ++.....+|.++++|+.+++.++
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 5666555433 33344455555556666555544
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.33 E-value=8.6e-06 Score=55.01 Aligned_cols=113 Identities=13% Similarity=0.156 Sum_probs=70.7
Q ss_pred CCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccC
Q 032459 18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGN 97 (140)
Q Consensus 18 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 97 (140)
+....+..+..|+.+.+..+ ++......+..+..++.+.+..+ +......+|..+.+|+.+.+.++.+.......|..
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 33444455667777777554 44344455666677777777543 33344456667777888777766665455566777
Q ss_pred CCCCcEEecccccccccCcccccCCCCCCeEEcCCC
Q 032459 98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 98 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 133 (140)
+.+|+.+.+..+ ++.....+|.++.+|+.+.+..+
T Consensus 309 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 309 CVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 777888777544 44455566777777777776543
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.28 E-value=2.7e-05 Score=52.98 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=85.1
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
..|+.+.+.... ..+....|..+..|+.+.+. +.++......|..+.+|+.+.+..+ ++.....+|..+.+|+.+.
T Consensus 265 ~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 265 AYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp SSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 345566655442 24556667888999999996 4455455668888999999999865 5545667888899999999
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
+..+ ++......|..+.+|+.+++.++... ...+....+|+.+.+..+.+
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 9654 55455678889999999999887643 24566778889888876644
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.13 E-value=2.5e-05 Score=52.75 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=84.6
Q ss_pred CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (140)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 81 (140)
..|+.+.+..+ + ..+....+..+..|+.+.+..+ +.......|..+.+|+.+.+..+.++.....+|..+.+|+.+.
T Consensus 240 ~~L~~i~lp~~-v-~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 240 KALDEIAIPKN-V-TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp SSCCEEEECTT-C-CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccceEEEcCCC-c-cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 34556666554 2 3566667788889999998654 4445556788899999999998888766678888999999999
Q ss_pred ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCC
Q 032459 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS 123 (140)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 123 (140)
+..+ ++......|..+.+|+.+.+..+ ++.....+|..+.
T Consensus 317 lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 317 LPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 9654 54455577888899999888654 5445555666553
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.10 E-value=3.4e-05 Score=52.47 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=57.3
Q ss_pred CCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCC
Q 032459 46 TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL 125 (140)
Q Consensus 46 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 125 (140)
.+..+.+|+.+.+..+ +......+|..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++.....+|..+++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3455666777766544 44344566777778888877543 44344566777888888888765 555666778888888
Q ss_pred CeEEcCCC
Q 032459 126 SNLDLSVN 133 (140)
Q Consensus 126 ~~l~l~~n 133 (140)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 88887654
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.01 E-value=1.8e-06 Score=53.35 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=76.8
Q ss_pred cCCCcccEEEccCC-ccccC----CCcCCcCCCCCCEEEeeccccccCcc----hhhccCCCccEEEecCCcccccCC--
Q 032459 24 NHLSNLESLFLKNN-MFHGK----IPSTLSNCKRLRNISLSLDDFSGTIP----KEIGNVTKLIRLYLRGNQLQGEIP-- 92 (140)
Q Consensus 24 ~~l~~L~~L~l~~~-~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~-- 92 (140)
..-+.|++|+|.++ ++.+. +...+...++|+.|++++|.+..... +.+..-..|+.|++++|.+.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45678999999885 76632 33445567889999999998874433 344456789999999999875433
Q ss_pred --hhccCCCCCcEEecccc---cccc----cCcccccCCCCCCeEEcCCCcc
Q 032459 93 --EELGNLAELEMLWLQNN---FLTR----AIPSSIFNLSSLSNLDLSVNNL 135 (140)
Q Consensus 93 --~~~~~~~~l~~l~l~~~---~~~~----~~~~~~~~~~~L~~l~l~~n~~ 135 (140)
..+.....|++|+++++ .+.+ .+..++..-++|+.++++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34556677999999754 3332 2334455667889999887754
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.97 E-value=5.5e-05 Score=51.43 Aligned_cols=106 Identities=12% Similarity=0.097 Sum_probs=77.9
Q ss_pred CCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccC
Q 032459 18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGN 97 (140)
Q Consensus 18 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 97 (140)
++...+..+.+|+.+.+..+ ++......|..+.+|+.+.+..+ ++.....+|..+.+|+.+.+..+ +.......|..
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 34445567788888888654 55455677888999999999754 65456778889999999999765 55455678889
Q ss_pred CCCCcEEecccccccccCcccccCCCCCCeE
Q 032459 98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNL 128 (140)
Q Consensus 98 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l 128 (140)
+.+|+.+++..+- + .....+..+++|+.+
T Consensus 365 C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 365 CINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 9999999997652 2 234567777777654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.55 E-value=0.00025 Score=40.85 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=31.2
Q ss_pred EEccCCeec-ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459 7 IRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64 (140)
Q Consensus 7 L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~ 64 (140)
++.+++.++ ..+|..+ .+++++|+|++|.|+...+..|..+++|+.|++.+|.+.
T Consensus 13 v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 344444442 2455443 335667777777776444445566666777777666553
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=7.3e-05 Score=46.19 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=65.2
Q ss_pred CcCCCCCCEEEeecc-ccccC----cchhhccCCCccEEEecCCcccccCC----hhccCCCCCcEEecccccccccCc-
Q 032459 47 LSNCKRLRNISLSLD-DFSGT----IPKEIGNVTKLIRLYLRGNQLQGEIP----EELGNLAELEMLWLQNNFLTRAIP- 116 (140)
Q Consensus 47 ~~~~~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~- 116 (140)
+...+.|+.|+++++ .+... ..+++..-+.|+.|++++|.+.+... ..+...+.|++|+++.|.+.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345688999999985 77632 34556667899999999999985433 445567999999999999986433
Q ss_pred ---ccccCCCCCCeEEcCCC
Q 032459 117 ---SSIFNLSSLSNLDLSVN 133 (140)
Q Consensus 117 ---~~~~~~~~L~~l~l~~n 133 (140)
.++..-++|++|++++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 34455678999999864
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.28 E-value=0.00091 Score=38.46 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=41.5
Q ss_pred CEEEeeccccc-cCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEeccccccc
Q 032459 54 RNISLSLDDFS-GTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT 112 (140)
Q Consensus 54 ~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 112 (140)
..++.+++.++ ...|..+. .+++.|++++|+++...+..+..+++|+++++.+|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777765 13343322 36889999999998666677788889999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.48 E-value=3.3 Score=22.31 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=28.4
Q ss_pred cCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc
Q 032459 17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61 (140)
Q Consensus 17 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~ 61 (140)
.+....|..+..|+.+.+..+ ++......|..+.+|+.+.+...
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 556666677777777777654 33345556667777777776554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.08 E-value=12 Score=20.07 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=35.4
Q ss_pred CCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCC
Q 032459 36 NNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85 (140)
Q Consensus 36 ~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 85 (140)
+.+++......|..+..|+.+.+..+ ++.....+|..+.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34455555667888888998888765 44456678888888888888664
Done!