Query 032460
Match_columns 140
No_of_seqs 129 out of 727
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 23:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i4o_A Translation initiation 100.0 1.8E-29 6.2E-34 177.3 7.4 70 65-134 10-79 (79)
2 1jt8_A EIF-1A, probable transl 99.9 9.4E-27 3.2E-31 170.0 5.8 85 52-137 3-88 (102)
3 1ah9_A IF1, initiation factor 99.9 1.1E-25 3.7E-30 152.9 7.1 70 65-134 2-71 (71)
4 1hr0_W Translation initiation 99.9 2.3E-26 7.9E-31 156.6 0.2 70 64-133 2-71 (71)
5 1d7q_A Translation initiation 99.9 3E-24 1E-28 165.0 11.0 77 60-137 22-98 (143)
6 2dgy_A MGC11102 protein; EIF-1 99.9 4.4E-24 1.5E-28 157.8 10.2 78 58-136 4-82 (111)
7 2oqk_A Putative translation in 99.9 2.3E-23 7.7E-28 154.3 7.0 77 60-137 23-99 (117)
8 1t9h_A YLOQ, probable GTPase E 98.8 8.3E-09 2.9E-13 85.7 8.3 64 70-136 10-76 (307)
9 2yv5_A YJEQ protein; hydrolase 98.5 2.4E-07 8.1E-12 75.3 7.9 62 70-136 6-69 (302)
10 2rcn_A Probable GTPase ENGC; Y 98.5 3E-07 1E-11 78.1 8.6 61 71-136 48-112 (358)
11 2k52_A Uncharacterized protein 97.4 0.00063 2.1E-08 45.4 6.8 66 70-137 8-74 (80)
12 2khi_A 30S ribosomal protein S 97.2 0.0011 3.8E-08 47.2 7.2 66 70-136 33-103 (115)
13 1u0l_A Probable GTPase ENGC; p 96.2 0.026 9E-07 45.2 9.0 59 71-132 11-70 (301)
14 2k4k_A GSP13, general stress p 95.1 0.039 1.4E-06 40.1 5.6 62 70-132 10-75 (130)
15 1luz_A Protein K3, protein K2; 95.0 0.028 9.4E-07 38.5 4.3 67 70-139 14-87 (88)
16 2khj_A 30S ribosomal protein S 94.8 0.1 3.5E-06 36.3 6.9 65 70-135 34-102 (109)
17 2wfw_A ARC; ATP-binding protei 93.9 0.15 5.1E-06 39.4 6.5 62 73-139 71-149 (153)
18 3h43_A Proteasome-activating n 93.8 0.23 7.9E-06 34.2 6.8 47 70-118 19-65 (85)
19 1kl9_A Eukaryotic translation 93.3 0.17 6E-06 39.1 6.1 65 70-135 18-88 (182)
20 2eqs_A ATP-dependent RNA helic 93.3 0.73 2.5E-05 31.8 8.7 63 70-135 15-85 (103)
21 2wg5_A General control protein 92.9 0.3 1E-05 34.9 6.4 47 70-118 38-84 (109)
22 2a19_A EIF-2- alpha, eukaryoti 92.7 0.26 9E-06 37.7 6.2 65 70-135 18-88 (175)
23 2cqo_A Nucleolar protein of 40 91.9 0.68 2.3E-05 33.0 7.2 65 70-135 25-96 (119)
24 3aev_A Translation initiation 91.1 0.56 1.9E-05 38.4 6.8 64 70-134 14-83 (275)
25 1nnx_A Protein YGIW; structura 90.9 0.62 2.1E-05 33.7 6.2 55 62-118 33-87 (109)
26 1wi5_A RRP5 protein homolog; S 90.0 1.7 5.7E-05 30.5 7.7 64 70-135 24-94 (119)
27 3m9b_A Proteasome-associated A 88.5 2.5 8.5E-05 34.8 8.7 68 63-136 153-236 (251)
28 1q8k_A Eukaryotic translation 86.3 0.9 3.1E-05 37.8 5.0 64 70-134 16-85 (308)
29 2id0_A Exoribonuclease 2; RNAs 85.7 1.3 4.4E-05 39.9 5.9 63 70-133 563-642 (644)
30 3cw2_C Translation initiation 82.4 1.1 3.8E-05 36.3 3.7 63 70-133 14-82 (266)
31 3go5_A Multidomain protein wit 81.5 1.9 6.4E-05 35.3 4.8 61 68-133 153-214 (285)
32 1gut_A Mopii, molybdate bindin 80.6 4.7 0.00016 24.8 5.5 51 70-121 8-61 (68)
33 3a0j_A Cold shock protein; OB- 80.5 6.4 0.00022 25.8 6.4 53 71-123 2-55 (73)
34 1h9m_A MODG, molybdenum-bindin 80.0 4.7 0.00016 27.6 5.9 52 70-122 83-137 (145)
35 1fr3_A MOP, molybdate/tungstat 75.9 9.3 0.00032 23.1 5.8 51 70-121 8-60 (67)
36 2nn6_I 3'-5' exoribonuclease C 75.9 6.7 0.00023 30.5 6.3 64 64-129 79-156 (209)
37 2g3r_A Tumor suppressor P53-bi 72.5 11 0.00037 28.1 6.3 63 69-133 20-82 (123)
38 2ytx_A Cold shock domain-conta 72.0 12 0.0004 26.0 6.1 52 68-121 16-68 (97)
39 2ckk_A KIN17; beta barrel, rib 72.0 19 0.00064 26.2 7.5 62 71-135 35-97 (127)
40 2id0_A Exoribonuclease 2; RNAs 71.7 13 0.00044 33.4 7.8 62 70-137 21-83 (644)
41 1wfq_A UNR protein; beta-barre 71.6 17 0.00058 24.8 6.8 52 69-122 17-69 (89)
42 3au7_A TIAS, putative uncharac 71.4 5.6 0.00019 34.5 5.2 106 13-119 221-344 (402)
43 3mxn_B RECQ-mediated genome in 70.9 10 0.00036 29.0 6.1 85 23-118 24-108 (150)
44 2vnu_D Exosome complex exonucl 69.5 7 0.00024 35.9 5.7 62 69-131 671-757 (760)
45 1go3_E DNA-directed RNA polyme 68.4 16 0.00055 27.1 6.7 59 70-130 84-162 (187)
46 1c9o_A CSPB, cold-shock protei 67.7 18 0.00063 23.0 6.0 51 71-121 2-53 (66)
47 2ja9_A Exosome complex exonucl 66.9 8.1 0.00028 29.5 4.8 57 63-122 4-65 (175)
48 2wp8_J Exosome complex exonucl 66.5 13 0.00043 35.4 6.9 61 69-130 888-973 (977)
49 2ba0_A Archeal exosome RNA bin 66.3 23 0.00078 27.8 7.4 59 63-123 54-117 (229)
50 2kcm_A Cold shock domain famil 64.4 12 0.00041 24.8 4.7 51 71-121 1-53 (74)
51 2vqe_L 30S ribosomal protein S 64.1 9.7 0.00033 28.7 4.6 45 70-118 32-86 (135)
52 2b8k_G B16, DNA-directed RNA p 63.7 9.4 0.00032 29.9 4.7 53 70-125 86-153 (215)
53 3cdi_A Polynucleotide phosphor 63.7 1.5 5E-05 40.5 0.0 61 70-132 630-694 (723)
54 2k5n_A Putative cold-shock pro 63.0 30 0.001 22.8 6.7 50 70-121 2-52 (74)
55 3d0f_A Penicillin-binding 1 tr 62.4 26 0.0009 23.8 6.3 47 70-119 36-94 (106)
56 1ssf_A Transformation related 62.1 24 0.00082 27.2 6.6 58 72-131 27-84 (156)
57 4b4t_L 26S protease subunit RP 61.9 26 0.00088 30.1 7.5 48 69-118 102-149 (437)
58 2nn6_G Exosome complex exonucl 61.6 15 0.00053 30.2 5.8 59 63-123 124-185 (289)
59 2je6_I RRP4, exosome complex R 60.4 21 0.00073 28.4 6.4 60 63-124 71-137 (251)
60 1y14_B B16, RPB7, DNA-directed 59.7 13 0.00045 27.5 4.7 52 70-124 86-152 (171)
61 3cam_A Cold-shock domain famil 59.6 32 0.0011 22.0 6.3 51 71-121 2-54 (67)
62 1g6p_A Cold shock protein TMCS 59.0 10 0.00035 24.2 3.5 51 71-121 1-52 (66)
63 4b4t_I 26S protease regulatory 58.5 20 0.0007 31.2 6.3 47 70-118 104-150 (437)
64 3m7n_A Putative uncharacterize 56.7 35 0.0012 25.6 6.7 55 63-120 55-123 (179)
65 2r7d_A Ribonuclease II family 56.5 14 0.00049 31.9 5.0 55 70-134 406-461 (469)
66 3psi_A Transcription elongatio 53.9 17 0.00059 35.5 5.5 62 69-131 904-970 (1219)
67 3bzc_A TEX; helix-turn-helix, 53.5 4.4 0.00015 37.8 1.4 63 70-134 657-724 (785)
68 2l1q_A Liver-expressed antimic 52.6 3.8 0.00013 25.2 0.5 15 44-58 2-16 (40)
69 2d9r_A Conserved hypothetical 52.1 16 0.00053 25.9 3.8 41 79-120 60-102 (104)
70 3i2z_B RNA chaperone, negative 52.1 45 0.0015 21.5 6.7 51 71-121 6-58 (71)
71 1b9m_A Protein (mode); DNA-bin 51.9 31 0.0011 26.1 5.8 49 70-121 205-256 (265)
72 1h9m_A MODG, molybdenum-bindin 51.6 46 0.0016 22.4 6.1 54 69-123 10-66 (145)
73 1wid_A DNA-binding protein RAV 51.3 62 0.0021 22.9 7.7 30 109-138 92-121 (130)
74 3qr8_A GPV, baseplate assembly 51.3 36 0.0012 26.0 6.0 64 68-132 16-84 (211)
75 4b4t_J 26S protease regulatory 50.6 41 0.0014 28.8 6.9 49 70-120 70-118 (405)
76 2xzm_L 40S ribosomal protein S 49.6 28 0.00096 26.4 5.0 48 70-119 47-105 (142)
77 3aqq_A Calcium-regulated heat 49.5 41 0.0014 25.2 5.9 51 69-121 61-113 (147)
78 3j20_N 30S ribosomal protein S 49.3 28 0.00097 26.5 5.0 35 83-119 72-107 (147)
79 3d3r_A Hydrogenase assembly ch 49.3 28 0.00097 24.8 4.8 43 71-118 26-69 (103)
80 3ts2_A Protein LIN-28 homolog 49.1 47 0.0016 24.3 6.2 57 65-121 4-69 (148)
81 2nn6_H Exosome complex exonucl 48.6 16 0.00055 30.3 3.9 56 63-120 92-161 (308)
82 3u5c_X RP37, S28, YS14, 40S ri 47.1 32 0.0011 26.2 5.0 48 69-118 47-105 (145)
83 2c35_B Human RPB7, DNA-directe 47.0 36 0.0012 24.9 5.3 52 70-124 84-152 (172)
84 2yty_A Cold shock domain-conta 45.4 68 0.0023 21.6 6.6 50 70-121 18-68 (88)
85 3u5c_c S33, YS27, 40S ribosoma 43.7 65 0.0022 21.5 5.6 41 71-118 8-57 (67)
86 3m9b_A Proteasome-associated A 43.2 36 0.0012 27.8 5.1 44 71-117 100-143 (251)
87 4aid_A Polyribonucleotide nucl 43.0 5.1 0.00017 37.1 0.0 61 70-132 640-704 (726)
88 1hh2_P NUSA, N utilization sub 42.1 54 0.0019 27.6 6.2 50 70-123 137-186 (344)
89 1e3p_A Guanosine pentaphosphat 42.0 3.2 0.00011 38.6 -1.5 61 70-132 670-738 (757)
90 2ytv_A Cold shock domain-conta 41.9 25 0.00087 23.4 3.4 47 72-121 10-58 (79)
91 3esi_A Uncharacterized protein 41.3 15 0.00051 26.8 2.3 28 108-136 77-104 (129)
92 4gop_A Putative uncharacterize 41.2 49 0.0017 23.4 5.0 46 67-118 19-64 (114)
93 3kdf_A Replication protein A 1 39.9 67 0.0023 23.0 5.6 34 67-100 23-57 (121)
94 1yfb_A Transition state regula 39.5 23 0.0008 22.5 2.8 24 96-120 24-47 (59)
95 2cqa_A RUVB-like 2; TIP48, TIP 39.5 49 0.0017 23.3 4.7 57 68-130 11-79 (95)
96 3p8d_A Medulloblastoma antigen 39.1 60 0.0021 21.4 4.8 29 69-97 21-49 (67)
97 3qii_A PHD finger protein 20; 38.7 51 0.0017 22.8 4.6 28 70-97 37-64 (85)
98 2z0s_A Probable exosome comple 37.9 70 0.0024 24.9 5.9 59 63-123 63-129 (235)
99 2z1c_A Hydrogenase expression/ 37.7 33 0.0011 23.0 3.4 39 73-118 7-45 (75)
100 2pi2_E Replication protein A 1 35.8 76 0.0026 23.4 5.5 47 67-118 44-91 (142)
101 2k5h_A Conserved protein; stru 35.3 93 0.0032 21.4 5.6 43 68-118 40-83 (101)
102 2zjr_R 50S ribosomal protein L 33.1 47 0.0016 23.9 3.8 32 104-136 11-43 (115)
103 2fhd_A RAD9 homolog, DNA repai 33.0 60 0.002 24.9 4.6 36 80-118 38-73 (153)
104 3ayh_B DNA-directed RNA polyme 33.0 53 0.0018 25.0 4.4 50 70-120 84-155 (203)
105 3j21_U 50S ribosomal protein L 32.7 32 0.0011 25.1 2.9 41 95-136 28-73 (121)
106 1w4s_A Polybromo, polybromo 1 32.7 44 0.0015 24.7 3.8 32 104-135 22-55 (174)
107 2zkr_t 60S ribosomal protein L 32.6 38 0.0013 25.5 3.4 30 106-136 46-77 (145)
108 4ayb_E DNA-directed RNA polyme 32.2 1.5E+02 0.005 21.6 6.6 52 70-123 84-150 (180)
109 1vq8_T 50S ribosomal protein L 32.0 34 0.0012 25.0 3.0 30 106-136 40-70 (120)
110 2imz_A Endonuclease PI-MTUI; N 31.2 40 0.0014 24.1 3.2 37 81-117 54-95 (168)
111 2l55_A SILB,silver efflux prot 30.9 37 0.0013 22.7 2.8 62 69-133 4-72 (82)
112 1mi8_A DNAB intein; all beta-s 30.9 53 0.0018 23.3 3.9 38 81-118 56-98 (158)
113 3go5_A Multidomain protein wit 30.8 1.2E+02 0.0039 24.6 6.3 61 70-133 72-134 (285)
114 2in0_A Endonuclease PI-MTUI; h 30.6 55 0.0019 22.8 3.8 38 81-118 54-96 (139)
115 2qcp_X Cation efflux system pr 30.6 44 0.0015 22.1 3.2 61 68-131 7-75 (80)
116 1nz9_A Transcription antitermi 30.3 66 0.0023 19.5 3.8 29 107-135 3-31 (58)
117 3psf_A Transcription elongatio 30.2 11 0.00037 36.3 0.0 61 70-131 908-973 (1030)
118 4eqp_A Thermonuclease; staphyl 29.8 1.1E+02 0.0038 21.8 5.5 51 69-120 8-71 (143)
119 2lcj_A PAB POLC intein; hydrol 29.7 1.7E+02 0.0057 21.5 6.9 38 80-117 73-119 (185)
120 2vb2_X Copper protein, cation 29.6 43 0.0015 22.6 3.0 62 67-131 14-83 (88)
121 1yel_A AT1G16640; CESG, protei 28.5 1.3E+02 0.0045 20.0 5.7 12 109-120 78-89 (104)
122 3hvz_A Uncharacterized protein 28.5 1.3E+02 0.0044 19.8 5.5 29 92-120 40-68 (78)
123 1qd7_I S17 ribosomal protein; 28.5 1.1E+02 0.0039 21.0 5.1 51 70-126 4-68 (89)
124 2do3_A Transcription elongatio 28.2 51 0.0017 22.0 3.1 24 109-132 18-41 (69)
125 3bdl_A Staphylococcal nuclease 28.2 88 0.003 27.2 5.4 31 70-100 24-54 (570)
126 1x65_A UNR protein; cell-free 28.1 47 0.0016 22.6 3.0 50 70-122 8-58 (89)
127 2gpr_A Glucose-permease IIA co 27.7 1.9E+02 0.0064 21.4 6.6 29 71-100 51-80 (154)
128 3v2d_Y 50S ribosomal protein L 27.5 68 0.0023 22.9 3.9 29 106-135 4-33 (110)
129 1we3_O CPN10(groes); chaperoni 27.4 60 0.0021 22.8 3.5 36 71-123 41-76 (100)
130 2bh8_A 1B11; transcription, mo 27.4 1.4E+02 0.0049 20.1 6.4 51 70-122 16-72 (101)
131 2d5d_A Methylmalonyl-COA decar 27.0 25 0.00086 21.4 1.3 12 92-103 6-17 (74)
132 2ot2_A Hydrogenase isoenzymes 26.9 55 0.0019 22.6 3.2 45 71-118 5-51 (90)
133 4e2g_A Cupin 2 conserved barre 26.4 1.4E+02 0.0047 19.5 5.1 44 75-118 45-92 (126)
134 2asb_A Transcription elongatio 26.4 1.3E+02 0.0046 24.3 5.9 50 70-120 10-64 (251)
135 4b4t_K 26S protease regulatory 25.8 2.7E+02 0.0092 23.6 8.0 47 70-118 94-140 (428)
136 2ckz_B C25, DNA-directed RNA p 25.4 1.5E+02 0.0051 23.0 5.8 50 70-120 84-151 (218)
137 2pi2_A Replication protein A 3 25.2 2.5E+02 0.0085 22.0 7.6 65 68-132 73-145 (270)
138 3iz5_Y 60S ribosomal protein L 24.7 67 0.0023 24.4 3.6 31 105-136 45-76 (150)
139 4b6m_A Tubulin-specific chaper 24.4 57 0.002 22.3 2.9 23 109-134 6-28 (84)
140 3ulj_A LIN28B, DNA-binding pro 24.4 1.7E+02 0.0058 19.9 5.5 55 66-121 4-68 (90)
141 3h0g_G DNA-directed RNA polyme 24.3 20 0.00067 26.7 0.5 55 70-126 87-155 (172)
142 1am2_A MXE GYRA intein; protei 23.9 68 0.0023 24.1 3.5 11 108-118 97-107 (199)
143 3bdl_A Staphylococcal nuclease 23.8 1.3E+02 0.0043 26.2 5.6 32 69-100 207-239 (570)
144 1ny4_A 30S ribosomal protein S 23.7 1.8E+02 0.0063 20.0 5.8 40 72-118 8-58 (82)
145 2e6z_A Transcription elongatio 23.6 55 0.0019 20.4 2.5 25 107-131 6-30 (59)
146 2l66_A SSO7C4, transcriptional 23.4 29 0.00098 21.1 1.0 23 97-120 15-37 (53)
147 1uhe_A Aspartate 1-decarboxyla 23.1 1.7E+02 0.0058 20.7 5.2 39 80-118 15-62 (97)
148 3j20_X 30S ribosomal protein S 22.2 1.8E+02 0.0063 19.5 6.6 41 71-118 7-58 (71)
149 1wwt_A Threonyl-tRNA synthetas 21.9 29 0.001 22.4 0.9 41 92-134 45-85 (88)
150 3uf8_A Ubiquitin-like protein 21.8 1.7E+02 0.0058 22.2 5.4 52 65-122 81-132 (209)
151 3bbn_Q Ribosomal protein S17; 21.8 1.4E+02 0.0048 22.4 4.8 51 70-126 62-126 (142)
152 1y43_B Aspergillopepsin II hea 21.4 53 0.0018 25.1 2.4 55 67-131 20-79 (173)
153 2xzm_1 Ribosomal protein S28E 21.0 1.9E+02 0.0066 19.2 5.6 40 72-118 8-58 (68)
154 1mvf_D MAZE protein, PEMI-like 20.9 1E+02 0.0034 19.8 3.5 29 91-120 10-38 (82)
155 1f3z_A EIIA-GLC, glucose-speci 20.7 2.7E+02 0.0092 20.8 7.0 29 71-100 56-85 (161)
156 2cp6_A Restin; microtubule bin 20.6 89 0.0031 24.2 3.6 12 109-120 63-74 (172)
157 3cp0_A Membrane protein implic 20.5 1.8E+02 0.006 18.6 4.9 43 71-118 27-69 (82)
158 1ynx_A Replication factor-A pr 20.4 1.4E+02 0.0046 20.4 4.2 32 86-118 46-78 (114)
159 1k0r_A NUSA; two component arr 20.3 1.5E+02 0.005 25.3 5.2 52 69-121 132-188 (366)
160 2oyn_A Hypothetical protein MJ 20.3 45 0.0015 25.1 1.8 35 92-127 106-140 (146)
No 1
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=99.96 E-value=1.8e-29 Score=177.25 Aligned_cols=70 Identities=51% Similarity=0.870 Sum_probs=66.7
Q ss_pred CCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEec
Q 032460 65 NSEKWVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLR 134 (140)
Q Consensus 65 k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~ 134 (140)
++|.++|+|+|++++||++|+|+|+||++++|+|+||||+++|||++||+|+||+||||++||+|+|||+
T Consensus 10 ~~~~ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R~~ 79 (79)
T 3i4o_A 10 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRYK 79 (79)
T ss_dssp --CCSEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred ccceEEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEEEcC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999985
No 2
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=99.93 E-value=9.4e-27 Score=170.02 Aligned_cols=85 Identities=25% Similarity=0.253 Sum_probs=75.4
Q ss_pred cccCCCcccccccCCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCC-CCeEEEE
Q 032460 52 AKKGGDRSSEEGANSEKWVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYD-TSKGRII 130 (140)
Q Consensus 52 ~~~~~~~~~~~~~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D-~~kGrIi 130 (140)
...+......++|+++.+++.|+|++++||+.|+|+|+||++++|+|+||||+ +|||.+||+|+||+|||| ++||+|+
T Consensus 3 ~~~~~~~~~~~~P~~~e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk-~IwI~~GD~VlVe~~~yd~~~Kg~Iv 81 (102)
T 1jt8_A 3 EQQQEQQIRVRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKN-RIWVREGDVVIVKPWEVQGDQKCDII 81 (102)
T ss_dssp CCSSCCCCCCCCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHH-HHCCCSCEEEEECCBCCTTSEEEEEE
T ss_pred cccCCcceecccCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEccccee-eEEecCCCEEEEEeccCCCCceEEEE
Confidence 33333335566777668999999999999999999999999999999999999 899999999999999999 9999999
Q ss_pred EEecCCC
Q 032460 131 YRLRNKI 137 (140)
Q Consensus 131 yRy~r~~ 137 (140)
|||.+.+
T Consensus 82 ~r~~~de 88 (102)
T 1jt8_A 82 WRYTKTQ 88 (102)
T ss_dssp EESSCSH
T ss_pred EEeCHHH
Confidence 9998764
No 3
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=99.92 E-value=1.1e-25 Score=152.94 Aligned_cols=70 Identities=49% Similarity=0.867 Sum_probs=67.2
Q ss_pred CCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEec
Q 032460 65 NSEKWVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLR 134 (140)
Q Consensus 65 k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~ 134 (140)
+++.++|+|+|++++||++|+|+|+||++++|+++||||++++|+.+||+|+|+++|||+++|+|+|||+
T Consensus 2 ~~~~~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~~r~~ 71 (71)
T 1ah9_A 2 KEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR 71 (71)
T ss_dssp CSCCEECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred CcceeEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEEEEEC
Confidence 5778999999999999999999999999999999999999999999999999999999999999999985
No 4
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=99.91 E-value=2.3e-26 Score=156.63 Aligned_cols=70 Identities=53% Similarity=0.953 Sum_probs=67.3
Q ss_pred cCCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEe
Q 032460 64 ANSEKWVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRL 133 (140)
Q Consensus 64 ~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy 133 (140)
++++.++|+|+|++++||++|+|+|+||++++|+++||||+++|||.+||+|+|+++|||+++|+|+|||
T Consensus 2 ~~~~~~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~~r~ 71 (71)
T 1hr0_W 2 KEKDTIRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYRK 71 (71)
T ss_dssp CCSCCCCCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEECSCC
T ss_pred CcccceEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEEEeC
Confidence 4778899999999999999999999999999999999999999999999999999999999999999997
No 5
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.91 E-value=3e-24 Score=165.05 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=72.0
Q ss_pred cccccCCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEecCCC
Q 032460 60 SEEGANSEKWVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRNKI 137 (140)
Q Consensus 60 ~~~~~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r~~ 137 (140)
..+++.++..++.|+|++++||+.|+|+|+||++++|+|+||||+ +|||.+||+|+|++||||++||+|+|||.+.+
T Consensus 22 ~~el~~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~de 98 (143)
T 1d7q_A 22 KRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNADE 98 (143)
T ss_dssp CCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECTTT
T ss_pred hhcccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEeccccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCHHH
Confidence 455667777899999999999999999999999999999999999 89999999999999999999999999998765
No 6
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=4.4e-24 Score=157.76 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=71.4
Q ss_pred cccccccCCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCC-CCeEEEEEEecCC
Q 032460 58 RSSEEGANSEKWVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYD-TSKGRIIYRLRNK 136 (140)
Q Consensus 58 ~~~~~~~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D-~~kGrIiyRy~r~ 136 (140)
+...+++.++..++.|+|++++||++|+|+|+||++++|+|+||||+ +|||.+||+|+|+++||| +++|+|+|||...
T Consensus 4 ~~l~e~~~p~ege~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~ 82 (111)
T 2dgy_A 4 GSSGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKD 82 (111)
T ss_dssp CCCCSSCCCCSSCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred hhhccccCCCCCeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcc-cEEEcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence 34456666667889999999999999999999999999999999998 899999999999999999 9999999999754
No 7
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.88 E-value=2.3e-23 Score=154.34 Aligned_cols=77 Identities=29% Similarity=0.310 Sum_probs=71.6
Q ss_pred cccccCCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEecCCC
Q 032460 60 SEEGANSEKWVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRNKI 137 (140)
Q Consensus 60 ~~~~~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r~~ 137 (140)
..+++.++..+|.|+|++++||++|+|+|+||++++|+|+||||+ +|||.+||+|+|+++|||+++|+|+|||++.+
T Consensus 23 ~~~~~~~~~~e~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk-~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~~ 99 (117)
T 2oqk_A 23 KRELVFKEEGQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRK-KVWVNPGDIVLVSLRDFQDSKGDIILKYTPDE 99 (117)
T ss_dssp CCCCCCCCTTEEEEEEEEEEETTEEEEEETTSCEEEEECCHHHHH-HSCCCTTCEEEEEECTTCTTEEEEEEECCHHH
T ss_pred hhhccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceec-CCcCCCCCEEEEEEEcCCCCeEEEEEEechHH
Confidence 456667777899999999999999999999999999999999999 99999999999999999999999999998764
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.83 E-value=8.3e-09 Score=85.66 Aligned_cols=64 Identities=25% Similarity=0.338 Sum_probs=56.0
Q ss_pred EEEEEEEEeCCCceEEEEeCC---CCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEecCC
Q 032460 70 VHEGFITESLPNGMFRVRLDN---EDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRNK 136 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~d---G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r~ 136 (140)
+-+|+|++.. +++|+|+.++ |..+.|+++|++|+.++.+.+||+|.++.. +.+.|.|+..++|+
T Consensus 10 ~~~g~vi~~~-~~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~--~~~~~~i~~i~~R~ 76 (307)
T 1t9h_A 10 MPEGKIIKAL-SGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAE--NDKEGYLMEIKERT 76 (307)
T ss_dssp CCEEEEEEEE-TTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECC--TTSCEEEEEECCCS
T ss_pred CCCeEEEEEE-CCEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEc--CCCceEEEEEcchh
Confidence 4579999997 9999999876 889999999999998899999999998854 55689999998875
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.52 E-value=2.4e-07 Score=75.25 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=52.5
Q ss_pred EEEEEEEEeCCCceE--EEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEecCC
Q 032460 70 VHEGFITESLPNGMF--RVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRNK 136 (140)
Q Consensus 70 e~~GvVik~l~n~~f--~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r~ 136 (140)
.+.|+|++.. +++| .|. ++|..+.|+++|++++.++ +.+||+|.++++ +.+.|.|....+|.
T Consensus 6 ~~~g~v~~~~-~~~~~~~v~-~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~--~~~~g~I~~i~er~ 69 (302)
T 2yv5_A 6 LKRGLVVDRE-AQMIGVYLF-EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVV--DPNTFAIEEVEERK 69 (302)
T ss_dssp CEEEEEEEEE-TTEEEEEET-TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEE--ETTEEEEEEECCCS
T ss_pred ceeEEEEEee-CCeEEEEEe-cCCEEEEEEEcCCcccCCC-CcCceEEEEEEc--cCCeEEEEeeCChH
Confidence 4789999997 9999 665 7788999999999998777 999999998865 55689999877664
No 10
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.51 E-value=3e-07 Score=78.08 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=49.9
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCCC-C---eEEEEEEecCC
Q 032460 71 HEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDT-S---KGRIIYRLRNK 136 (140)
Q Consensus 71 ~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~-~---kGrIiyRy~r~ 136 (140)
+.|+|++.. +++|.|..++|..+.|+++|+++. +.+||+|.++....+. + +|.|+..++|+
T Consensus 48 ~~g~Vi~~~-~~~~~v~~~~g~~~~~~~r~~~~~----~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R~ 112 (358)
T 2rcn_A 48 AEGIVISRF-GMHADVESADGEVHRCNIRRTIRS----LVTGDRVVWRPGKAAAEGVNVKGIVEAVHERT 112 (358)
T ss_dssp EEEEEEEEE-TTEEEEEETTSCEEEEEECTTCCC----CCBTCEEEEECBC-------CCEEEEEECCCS
T ss_pred ceEEEEEEE-CCEEEEEeCCCcEEEEEecCCCCC----CCCCcEEEEEeCCCccccccccceEeEEeCCc
Confidence 689999997 999999988999999999999974 9999999988543211 0 39999988875
No 11
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=97.36 E-value=0.00063 Score=45.44 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=51.7
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEeccccccccc-ccCCCCEEEEEeccCCCCeEEEEEEecCCC
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFI-RVLPGDRVRVEVSRYDTSKGRIIYRLRNKI 137 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~I-rI~vGDrV~VE~sp~D~~kGrIiyRy~r~~ 137 (140)
.+.|+|+++.+.|.| |++++|..=+++++- +...++ .+.+||.|.|.+...|.++|+|........
T Consensus 8 iv~G~V~~v~~~G~f-V~l~~~~~Gllh~se-l~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~ 74 (80)
T 2k52_A 8 FYKGVVTRIEKYGAF-INLNEQVRGLLRPRD-MISLRLENLNVGDEIIVQAIDVRPEKREIDFKYIPLE 74 (80)
T ss_dssp EEEEEEEEEETTEEE-EEEETTEEEEECGGG-CSSCCGGGCCTTCEEEEEEEEEETTTTEEEEEECSCC
T ss_pred EEEEEEEEEeCCEEE-EEECCCCEEEEEHHH-CCcccceeeCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 489999999877776 888888777777775 322233 588999999999988888899988776543
No 12
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.22 E-value=0.0011 Score=47.21 Aligned_cols=66 Identities=26% Similarity=0.168 Sum_probs=52.1
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEeccc-----ccccccccCCCCEEEEEeccCCCCeEEEEEEecCC
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGK-----IRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRNK 136 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GK-----mRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r~ 136 (140)
.+.|+|+.+.+.|.| |++++|..-+++++-- .+.....+.+||.|.|.+...|.++|+|.......
T Consensus 33 ~~~G~V~~v~~~G~F-V~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk~~ 103 (115)
T 2khi_A 33 KLTGRVTNLTDYGCF-VEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQC 103 (115)
T ss_dssp EEEEEEEEEETTEEE-EECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCCCC
T ss_pred EEEEEEEEEECCEEE-EEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEEec
Confidence 589999999877776 9998898889988653 22223358999999999998888889998766543
No 13
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.19 E-value=0.026 Score=45.22 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=45.9
Q ss_pred EEEEEEEeCCCceEEEEeCC-CCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEE
Q 032460 71 HEGFITESLPNGMFRVRLDN-EDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYR 132 (140)
Q Consensus 71 ~~GvVik~l~n~~f~V~l~d-G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyR 132 (140)
+.|+|++.. +++|+|.+.+ |..+.|++.|++......+-+||.|.+.+. +..+..|..-
T Consensus 11 ~~g~v~~~~-~~~~~v~~~~~~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~--~~~~~~iwD~ 70 (301)
T 1u0l_A 11 RRGIVVSFH-SNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPD--ETGSGVIENV 70 (301)
T ss_dssp EEEEEEEEE-TTEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECC--CSSSEEEEEE
T ss_pred eeEEEEEee-CCEEEEEEcCCCcEEEEEEcccccccCCCCCCccEEEEEEc--CCCeEEEEEE
Confidence 689999996 9999998766 899999999999833567889999987743 2235555543
No 14
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=95.11 E-value=0.039 Score=40.05 Aligned_cols=62 Identities=32% Similarity=0.293 Sum_probs=45.1
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecc----cccccccccCCCCEEEEEeccCCCCeEEEEEE
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISG----KIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYR 132 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~G----KmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyR 132 (140)
.+.|+|+.+.+.|. .|.+++|..=+++++- .+..-.-.+.+||.|.|.+...|..+|+|..-
T Consensus 10 iv~G~V~~i~~~G~-FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LS 75 (130)
T 2k4k_A 10 VYTGKVTGLQAYGA-FVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLS 75 (130)
T ss_dssp EEEEEEEEEETTEE-EEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEEEeCCeE-EEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEE
Confidence 58999999976665 5888888777787753 22221234889999999988777777887654
No 15
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=95.04 E-value=0.028 Score=38.54 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=47.7
Q ss_pred EEEEEEEEeCCCceEEEEeCC--CCEEEEEec-----ccccccccccCCCCEEEEEeccCCCCeEEEEEEecCCCCC
Q 032460 70 VHEGFITESLPNGMFRVRLDN--EDLILGYIS-----GKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRNKISS 139 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~d--G~~~lcrI~-----GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r~~~~ 139 (140)
.+.|+|+ +.+.|. .|++++ |.+=++|++ +++..-.-.+ +||.|.|.+...|..+|+|-...++-..+
T Consensus 14 ~~~G~V~-v~~fG~-FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~~~~~ 87 (88)
T 1luz_A 14 VIKGRVY-EKDYAL-YIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMCRH 87 (88)
T ss_dssp EEEEEEE-EETTEE-EEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEEECSC
T ss_pred EEEEEEE-EEccEE-EEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEeecCCC
Confidence 5899999 876665 578864 788888888 2222111125 99999999988888889998766554443
No 16
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=94.84 E-value=0.1 Score=36.35 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=43.3
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecc----cccccccccCCCCEEEEEeccCCCCeEEEEEEecC
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISG----KIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRN 135 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~G----KmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r 135 (140)
.+.|+|+++.+.|. .|++.+|..=+++++- +...-.-.+.+||.|.|.+...|..+++|......
T Consensus 34 iv~G~V~~v~~~G~-fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k~ 102 (109)
T 2khj_A 34 IVTGKVTAVDAKGA-TVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRA 102 (109)
T ss_dssp EEEEEEEEECSSCE-EEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEETTS
T ss_pred EEEEEEEEEECCeE-EEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 48999999986665 5888776544444432 11111124889999999988777766777665544
No 17
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=93.92 E-value=0.15 Score=39.38 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=46.8
Q ss_pred EEEEEeCCC-ceEEEEeCCCCEEEEEeccccccccc----------------ccCCCCEEEEEeccCCCCeEEEEEEecC
Q 032460 73 GFITESLPN-GMFRVRLDNEDLILGYISGKIRQNFI----------------RVLPGDRVRVEVSRYDTSKGRIIYRLRN 135 (140)
Q Consensus 73 GvVik~l~n-~~f~V~l~dG~~~lcrI~GKmRk~~I----------------rI~vGDrV~VE~sp~D~~kGrIiyRy~r 135 (140)
.+|.++|++ ++-.|....|.++..+++|-++...+ .+.+||.|+|. +..|....|.++
T Consensus 71 ~tv~EvL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD-----~rag~A~E~ipk 145 (153)
T 2wfw_A 71 STLREVLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLLVD-----TKAGYAFERIPK 145 (153)
T ss_dssp EEEEEECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEEEE-----TTTTEEEEEECS
T ss_pred EEEEEEeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEEEc-----CCCceEEEEcCc
Confidence 678888988 79999988899999999999975211 69999999984 456899999888
Q ss_pred CCCC
Q 032460 136 KISS 139 (140)
Q Consensus 136 ~~~~ 139 (140)
.+-.
T Consensus 146 ~eVe 149 (153)
T 2wfw_A 146 AEVE 149 (153)
T ss_dssp CC--
T ss_pred cchh
Confidence 7644
No 18
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=93.84 E-value=0.23 Score=34.21 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=41.5
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
...|.|++.+.++.+-|+..+|.++...+.+.+.+. .+.||++|.+-
T Consensus 19 ~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~--~LkpG~rVaLn 65 (85)
T 3h43_A 19 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPD--DLAPGKRVCLN 65 (85)
T ss_dssp EEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGG--GCCTTCEEEEC
T ss_pred ceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHH--HCCCCCEEEEC
Confidence 467999999999999999999999999999999764 68999999663
No 19
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=93.33 E-value=0.17 Score=39.06 Aligned_cols=65 Identities=26% Similarity=0.139 Sum_probs=43.8
Q ss_pred EEEEEEEEeCCCceEEEEe--CCCCEEEEEecc----cccccccccCCCCEEEEEeccCCCCeEEEEEEecC
Q 032460 70 VHEGFITESLPNGMFRVRL--DNEDLILGYISG----KIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRN 135 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l--~dG~~~lcrI~G----KmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r 135 (140)
.+.|+|+.+...|.| |.+ .+|..=+.|++= +++.-.-.+.+||.|.|.+...|..+|+|.--..+
T Consensus 18 iv~G~V~~I~~fGaF-V~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~ 88 (182)
T 1kl9_A 18 VVMVNVRSIAEMGAY-VSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRR 88 (182)
T ss_dssp EEEEEEEEECSSEEE-EEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred EEEEEEEEEeccEEE-EEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 589999999766654 888 467777777762 22222223889999999998888888988765443
No 20
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.25 E-value=0.73 Score=31.82 Aligned_cols=63 Identities=24% Similarity=0.244 Sum_probs=42.8
Q ss_pred EEEEEEEEeCCCceEEEEeCC---CCEEEEEecccc-----cccccccCCCCEEEEEeccCCCCeEEEEEEecC
Q 032460 70 VHEGFITESLPNGMFRVRLDN---EDLILGYISGKI-----RQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRN 135 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~d---G~~~lcrI~GKm-----Rk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r 135 (140)
.+.|+|+++.+.|.| |++.+ +..=++|++=-. +.-.-.+.+||.|.|.+...|. ++|..-.+.
T Consensus 15 i~~G~V~~v~~fG~F-V~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSlk~ 85 (103)
T 2eqs_A 15 IYNGKVTSIMQFGCF-VQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSMKD 85 (103)
T ss_dssp EEEEEEEEECSSCEE-EEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEESTT
T ss_pred EEEEEEEEEeccEEE-EEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEEee
Confidence 589999999877764 77875 777788776321 1111238899999999876554 466554433
No 21
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=92.94 E-value=0.3 Score=34.87 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=41.8
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
...|.|++++.++.+-|...+|..+...+.+.+.+. .+.||++|-+-
T Consensus 38 ~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~--~LkpG~rVaLn 84 (109)
T 2wg5_A 38 LLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEE--ELKPGARVALN 84 (109)
T ss_dssp EEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTT--TCCTTCEEEEE
T ss_pred ceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHH--HCCCCCEEEEC
Confidence 467999999999999999999999999999999764 69999999774
No 22
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=92.65 E-value=0.26 Score=37.70 Aligned_cols=65 Identities=22% Similarity=0.135 Sum_probs=46.0
Q ss_pred EEEEEEEEeCCCceEEEEeC--CCCEEEEEecc----cccccccccCCCCEEEEEeccCCCCeEEEEEEecC
Q 032460 70 VHEGFITESLPNGMFRVRLD--NEDLILGYISG----KIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRN 135 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~--dG~~~lcrI~G----KmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r 135 (140)
.+.|+|+.+...|.| |.++ +|..=++|++= +++.-.-.+.+||.|.|.+...|..+|+|.--..+
T Consensus 18 iv~G~V~~i~~fGaF-V~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~ 88 (175)
T 2a19_A 18 IVMVNVQQIAEMGAY-VKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRR 88 (175)
T ss_dssp EEEEEEEEEETTEEE-EEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTT
T ss_pred EEEEEEEEEecceEE-EEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEe
Confidence 589999999766665 7784 67777777762 22222234889999999988888888888765443
No 23
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.85 E-value=0.68 Score=33.04 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=42.8
Q ss_pred EEEEEEEEeCCCceEEEEeCC-CCEEEEEecc----cccccccccCCCCEEEEEeccCCCC--eEEEEEEecC
Q 032460 70 VHEGFITESLPNGMFRVRLDN-EDLILGYISG----KIRQNFIRVLPGDRVRVEVSRYDTS--KGRIIYRLRN 135 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~d-G~~~lcrI~G----KmRk~~IrI~vGDrV~VE~sp~D~~--kGrIiyRy~r 135 (140)
.+.|+|+.+...|. .|.+++ +..=++|++= ++..-.-.+.+||.|.|.+...|.. +|+|..-...
T Consensus 25 iv~G~V~~I~~fGa-FV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 25 IFQGEVAMVTDYGA-FIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp EEEEEEEEEETTEE-EEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred EEEEEEEEEeCceE-EEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 59999999986665 477754 3466677652 1111112388999999988766654 4788765544
No 24
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=91.07 E-value=0.56 Score=38.38 Aligned_cols=64 Identities=25% Similarity=0.195 Sum_probs=47.2
Q ss_pred EEEEEEEEeCCCceEEEEeC--CCCEEEEEecc----cccccccccCCCCEEEEEeccCCCCeEEEEEEec
Q 032460 70 VHEGFITESLPNGMFRVRLD--NEDLILGYISG----KIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLR 134 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~--dG~~~lcrI~G----KmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~ 134 (140)
.+.|+|+.+...|. .|.+. +|..=++|++= +++.-.-.+.+||.|.|.+...|..+|+|.--..
T Consensus 14 iv~G~V~~I~~fGa-FV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk 83 (275)
T 3aev_A 14 FVVATVKRIHNYGA-FLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLR 83 (275)
T ss_dssp EEEEEEEEEETTEE-EEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEEST
T ss_pred EEEEEEEEEECcEE-EEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 48999999986665 47886 68888888873 2222122488999999998888887888875543
No 25
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=90.87 E-value=0.62 Score=33.68 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=46.3
Q ss_pred cccCCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 62 EGANSEKWVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 62 ~~~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
.|+.+..++++|.|++.+++..|..+...| ++.-.|.=+.- ++..+-|+|+|.+.
T Consensus 33 ~~~Dd~~V~L~G~Iv~~~~~d~Y~F~D~TG-~I~VeId~~~w-~g~~v~p~~~Vri~ 87 (109)
T 1nnx_A 33 SLRDDTWVTLRGNIVERISDDLYVFKDASG-TINVDIDHKRW-NGVTVTPKDTVEIQ 87 (109)
T ss_dssp TSCSSEEEEEEEEEEEEEETTEEEEEETTE-EEEEECCGGGS-TTCCCCTTSCEEEE
T ss_pred hCcCCCeEEEEEEEEEEeCCCeEEEECCCc-cEEEEEChhhc-CCcccCCCCEEEEE
Confidence 466677889999999999999999998777 77888887765 46779999999886
No 26
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=90.00 E-value=1.7 Score=30.50 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=42.2
Q ss_pred EEEEEEEEeCCCceEEEEeC-CCCEEEEEecccc----c--ccccccCCCCEEEEEeccCCCCeEEEEEEecC
Q 032460 70 VHEGFITESLPNGMFRVRLD-NEDLILGYISGKI----R--QNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRN 135 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~-dG~~~lcrI~GKm----R--k~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r 135 (140)
.+.|+|+.+...|. .|++. ++.. ..+++--. + .-+-.+.+||.|.|.+...|.++++|......
T Consensus 24 i~~G~V~~v~~fG~-fV~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~ 94 (119)
T 1wi5_A 24 LLTGTVSSLEDHGY-LVDIGVDGTR-AFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGH 94 (119)
T ss_dssp EEEEEEEEECSSEE-EEECCCSSCE-EEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCC
T ss_pred EEEEEEEEEeCceE-EEEECCCCeE-EEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEch
Confidence 58999999975554 58886 3443 33333211 0 11224889999999998888888888766543
No 27
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=88.46 E-value=2.5 Score=34.81 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=51.6
Q ss_pred ccCCcceEEEEEEEEeCCC-ceEEEEeCCCCEEEEEeccccccc---------------ccccCCCCEEEEEeccCCCCe
Q 032460 63 GANSEKWVHEGFITESLPN-GMFRVRLDNEDLILGYISGKIRQN---------------FIRVLPGDRVRVEVSRYDTSK 126 (140)
Q Consensus 63 ~~k~d~ie~~GvVik~l~n-~~f~V~l~dG~~~lcrI~GKmRk~---------------~IrI~vGDrV~VE~sp~D~~k 126 (140)
+|.+..+++ .+|.++|.+ ++..|....|.++..+++|-+... .-.+.+||.|+| |+.-
T Consensus 153 Lp~E~~Gev-~tv~E~l~d~~R~lV~~~~~eerVv~lA~~L~~~~~~~~~~~~~~~~~~~~~lr~GDsllv-----D~ra 226 (251)
T 3m9b_A 153 GTFEAVGEI-STLREILADGHRALVVGHADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLV-----DTKA 226 (251)
T ss_dssp CCCCCCSEE-EEEEEECTTSSEEEEECSSSCEEEEECCGGGTCSCCCCCCCSSSCCCCSCCCCCTTCEEEE-----CTTT
T ss_pred cCCCCcccE-EEEEEEecCCCEEEEecCCCceEEEEechhhhccccccccccccccccccCCCCCCCEEEE-----eCCC
Confidence 555655555 678888844 599998888999999999999753 116899999988 5566
Q ss_pred EEEEEEecCC
Q 032460 127 GRIIYRLRNK 136 (140)
Q Consensus 127 GrIiyRy~r~ 136 (140)
|....+.++.
T Consensus 227 g~A~E~ip~~ 236 (251)
T 3m9b_A 227 GYAFERIPLV 236 (251)
T ss_dssp CBEEEECCCC
T ss_pred ceEEEEccCC
Confidence 8787777654
No 28
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=86.28 E-value=0.9 Score=37.85 Aligned_cols=64 Identities=27% Similarity=0.100 Sum_probs=45.6
Q ss_pred EEEEEEEEeCCCceEEEEeC--CCCEEEEEecc----cccccccccCCCCEEEEEeccCCCCeEEEEEEec
Q 032460 70 VHEGFITESLPNGMFRVRLD--NEDLILGYISG----KIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLR 134 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~--dG~~~lcrI~G----KmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~ 134 (140)
.+.|+|+.+.+.|. .|.+. +|..=+++++= +++.-.-.+.+||.|.|.+...|..+|+|---.+
T Consensus 16 iv~G~V~~I~~fGa-FV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK 85 (308)
T 1q8k_A 16 VVMVNVRSIQEMGA-YVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKR 85 (308)
T ss_dssp EEEEEEEEEETTEE-EEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECS
T ss_pred EEEEEEEEEeCcEE-EEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEE
Confidence 58999999986665 48886 57777777652 2222222388999999998877888888865443
No 29
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=85.69 E-value=1.3 Score=39.91 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=46.2
Q ss_pred EEEEEEEEeCCCceEEEEe-CCCCEEEEEec------cccc----------ccccccCCCCEEEEEeccCCCCeEEEEEE
Q 032460 70 VHEGFITESLPNGMFRVRL-DNEDLILGYIS------GKIR----------QNFIRVLPGDRVRVEVSRYDTSKGRIIYR 132 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l-~dG~~~lcrI~------GKmR----------k~~IrI~vGDrV~VE~sp~D~~kGrIiyR 132 (140)
+.+|+|+.+...|.| |++ +.|.+-+.+++ ..++ +.+..+.+||.|.|.+..-|..+++|...
T Consensus 563 ~f~g~V~~V~~~G~f-V~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~~I~~~ 641 (644)
T 2id0_A 563 RFAAEIVDISRGGMR-VRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 641 (644)
T ss_dssp CEEEEEEEEETTEEE-EEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEEEE
T ss_pred eEEEEEEEEeCCceE-EEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCCCEEEEE
Confidence 589999999766655 888 57888787773 2211 12335889999999998888888888765
Q ss_pred e
Q 032460 133 L 133 (140)
Q Consensus 133 y 133 (140)
.
T Consensus 642 l 642 (644)
T 2id0_A 642 P 642 (644)
T ss_dssp E
T ss_pred E
Confidence 3
No 30
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=82.42 E-value=1.1 Score=36.29 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=43.2
Q ss_pred EEEEEEEEeCCCceEEEEeC--CCCEEEEEecc----cccccccccCCCCEEEEEeccCCCCeEEEEEEe
Q 032460 70 VHEGFITESLPNGMFRVRLD--NEDLILGYISG----KIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRL 133 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~--dG~~~lcrI~G----KmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy 133 (140)
.+.|+|..+.+.|.| |.+. +|..=++|++= +++.-.-.+.+||.|.|.+...|..+|+|---.
T Consensus 14 iv~G~V~~I~~~GaF-V~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSl 82 (266)
T 3cw2_C 14 ILIATVKQVFDYGSY-VSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSL 82 (266)
T ss_dssp EEEEEEEECCSSSBE-EEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEES
T ss_pred EEEEEEEEEeccEEE-EEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEE
Confidence 489999999887765 7775 66555555552 111111238899999999987787778775543
No 31
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=81.49 E-value=1.9 Score=35.31 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=45.6
Q ss_pred ceEEEEEEEEeCCCceEEE-EeCCCCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEe
Q 032460 68 KWVHEGFITESLPNGMFRV-RLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRL 133 (140)
Q Consensus 68 ~ie~~GvVik~l~n~~f~V-~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy 133 (140)
.-.++|+|.+....|.| | .+++|..=++|++=-.. .+.+||.|.+.+...+++.|+|---.
T Consensus 153 G~~V~g~V~~i~~~G~f-V~~i~~g~~Glih~SEl~~----~l~~Gd~v~~~V~~id~~d~kI~LSl 214 (285)
T 3go5_A 153 NQNWPAIVYRLKLSGTF-VYLPENNMLGFIHPSERYA----EPRLGQVLDARVIGFREVDRTLNLSL 214 (285)
T ss_dssp TCEEEEEEEEEETTEEE-EEETTTTEEEEECGGGCSS----CCCTTCEEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEEEEEeCCcEE-EEEeCCCeEEEEEHHHccc----cCCCCCEEEEEEEEEECCCCeEEEEe
Confidence 34699999999767766 5 78888777777764332 38899999998877777678875443
No 32
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=80.61 E-value=4.7 Score=24.81 Aligned_cols=51 Identities=18% Similarity=0.045 Sum_probs=34.7
Q ss_pred EEEEEEEEeCC-CceEEEEe--CCCCEEEEEecccccccccccCCCCEEEEEecc
Q 032460 70 VHEGFITESLP-NGMFRVRL--DNEDLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 70 e~~GvVik~l~-n~~f~V~l--~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
.+.|+|.++.. +....|.+ .+|..+.+.|.-.-.. ...+.+||.|.+.+.+
T Consensus 8 ~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~-~l~L~~G~~V~a~ika 61 (68)
T 1gut_A 8 QLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVE-ELGVKEGAELTAVVKS 61 (68)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHH-HHTCCTTCEEEEECCG
T ss_pred EEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHH-HCCCCCCCEEEEEEec
Confidence 47788888753 34455554 4677888888744322 4569999999987654
No 33
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=80.53 E-value=6.4 Score=25.80 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=37.2
Q ss_pred EEEEEEEeCC-CceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCC
Q 032460 71 HEGFITESLP-NGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYD 123 (140)
Q Consensus 71 ~~GvVik~l~-n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D 123 (140)
..|+|...-. .|+=.+..+||..+-.|++.=-....-.+.+||+|.+++..-+
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~ 55 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGR 55 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSSCSSCCTTCEEEEEEECCS
T ss_pred CCEEEEEEECCCCEEEEecCCCCcEEEEhhhccccCCCCCCCCCEEEEEEEECC
Confidence 5688888643 3344566678888999998754432235999999999986443
No 34
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=79.95 E-value=4.7 Score=27.57 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=35.4
Q ss_pred EEEEEEEEeCC-Cc--eEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccC
Q 032460 70 VHEGFITESLP-NG--MFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRY 122 (140)
Q Consensus 70 e~~GvVik~l~-n~--~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~ 122 (140)
.+.|+|.++.. +. .+.|++.+|..+.+.+.-.-.. ...+.+||.|.+.+.+.
T Consensus 83 ~l~g~V~~i~~~G~~~~v~v~~~~g~~l~a~it~~~~~-~l~l~~G~~V~~~~k~~ 137 (145)
T 1h9m_A 83 ILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVA-ELGLKPGASASAVIKAS 137 (145)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHH-HTTCCTTCEEEEEECGG
T ss_pred EEEEEEEEEEeCCceEEEEEEeCCCCEEEEEEcHHHHh-hcCCCCCCEEEEEEccc
Confidence 47899988643 34 3455556788888888744322 23578999999976653
No 35
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=75.88 E-value=9.3 Score=23.06 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=33.8
Q ss_pred EEEEEEEEeCC-CceEEEEeC-CCCEEEEEecccccccccccCCCCEEEEEecc
Q 032460 70 VHEGFITESLP-NGMFRVRLD-NEDLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 70 e~~GvVik~l~-n~~f~V~l~-dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
.+.|+|.++.. +....|.++ +|..+.+.+.-.-.. ...+.+||.|.+.+.+
T Consensus 8 ~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s~~-~l~L~~G~~V~~~ika 60 (67)
T 1fr3_A 8 KLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVA-DLDLVPGDKVTALVKA 60 (67)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHHH-HHTCCTTCEEEEEECG
T ss_pred EEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHHHH-hCCCCCCCEEEEEEec
Confidence 47788888743 445666653 333777887644322 3569999999988754
No 36
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=75.88 E-value=6.7 Score=30.51 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=35.9
Q ss_pred cCCcceEEEEEEEEeCCCceEEEEeC-----------CCCEEEEEec-ccccccccc--cCCCCEEEEEeccCCCCeEEE
Q 032460 64 ANSEKWVHEGFITESLPNGMFRVRLD-----------NEDLILGYIS-GKIRQNFIR--VLPGDRVRVEVSRYDTSKGRI 129 (140)
Q Consensus 64 ~k~d~ie~~GvVik~l~n~~f~V~l~-----------dG~~~lcrI~-GKmRk~~Ir--I~vGDrV~VE~sp~D~~kGrI 129 (140)
|+... .+.|+|+++. +..+.|.+. +|-...--++ .+..+-.+. +.+||.|.+++-..+.+.++|
T Consensus 79 p~vGD-vV~G~V~~v~-~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 79 PDVGA-IVTCKVSSIN-SRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCTTC-EEEEEEEEEC-SSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCC-EEEEEEEEEE-CceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 44433 4899999996 555667642 3444333333 111100122 889999998876555544433
No 37
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=72.52 E-value=11 Score=28.08 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=42.1
Q ss_pred eEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEe
Q 032460 69 WVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRL 133 (140)
Q Consensus 69 ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy 133 (140)
.-=-|+|+...+++.|+|..+||.... +.+|.-.-.-.|.+|--|.-.....-.+-|.|+--+
T Consensus 20 ~yYpG~V~~~~~~~ky~V~FdDg~~~~--v~~k~iiv~d~ip~g~~V~A~teddy~~~GiI~~~k 82 (123)
T 2g3r_A 20 YFYSGKITRDVGAGKYKLLFDDGYECD--VLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHR 82 (123)
T ss_dssp CEEEEEEEEEEETTEEEEEETTSCEEE--EEGGGEECCSSCCTTCEEEEECTTSCEEEEEEEEEE
T ss_pred cCcccEEEEeccCCeEEEEEcCCCeeE--eecceEEEecccCCCcEEEEeecCccccceEEEEEe
Confidence 346699988778999999999998644 445443323357778888765433223668777433
No 38
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=71.98 E-value=12 Score=25.97 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=40.0
Q ss_pred ceEEEEEEEEeCCCceEEEEeCCC-CEEEEEecccccccccccCCCCEEEEEecc
Q 032460 68 KWVHEGFITESLPNGMFRVRLDNE-DLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 68 ~ie~~GvVik~l~n~~f~V~l~dG-~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
..+..|+|... ..|+=.+..+|| ..+-.|++.=-.. .-.+.+||+|.+++..
T Consensus 16 ~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-~~~L~~G~~V~F~v~~ 68 (97)
T 2ytx_A 16 QARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-LETLQPGDDVEFTIKD 68 (97)
T ss_dssp CCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-TTSCCSCCEEEEEECC
T ss_pred CcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-cCCCCCCCEEEEEEEc
Confidence 34578999887 677777887775 8899998875543 3469999999999853
No 39
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=71.98 E-value=19 Score=26.19 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=45.8
Q ss_pred EEEEEEEeCCCceEEEEe-CCCCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEecC
Q 032460 71 HEGFITESLPNGMFRVRL-DNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLRN 135 (140)
Q Consensus 71 ~~GvVik~l~n~~f~V~l-~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~r 135 (140)
-.|+|..+++++...|++ ++|+.+ .+.-.... -+-+.+||+|.|-.=+|--..|.++.+-..
T Consensus 35 ~KgvV~~V~~~~~c~V~l~~~g~~v--~v~q~~LE-TViP~~g~~V~Iv~G~~rG~~g~L~~id~~ 97 (127)
T 2ckk_A 35 KKAIVKEVIDKYTAVVKMIDSGDKL--KLDQTHLE-TVIPAPGKRILVLNGGYRGNEGTLESINEK 97 (127)
T ss_dssp CEEEEEEEETTTEEEEEETTTCCEE--EEEGGGEE-ECCCCTTCEEEECSSTTTTCEEEEEEEEGG
T ss_pred ceEEEEEecCCCeEEEEECCCCCEE--EEchHHcE-EecCCCCCEEEEEecccCCcEEEEEEEeCC
Confidence 458999998889999998 566554 66666654 456899999999655666677888877543
No 40
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=71.68 E-value=13 Score=33.38 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=45.9
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCC-CCeEEEEEEecCCC
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYD-TSKGRIIYRLRNKI 137 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D-~~kGrIiyRy~r~~ 137 (140)
.++|+|.-. +.|+-.|..+++. --+|+.+-.. ....||+|+|.+.+.. ..+|.|+...+|..
T Consensus 21 ~~~G~~~~~-~~GfgF~~~d~~~--difi~~~~~~---~a~~GD~V~v~i~~~~~~~eg~v~~iler~~ 83 (644)
T 2id0_A 21 RAEGVVKAT-EKGFGFLEVDAQK--SYFIPPPQMK---KVMHGDRIIAVIHSEKERESAEPEELVEPFL 83 (644)
T ss_dssp EEEEEEECC-SSSCEEEECSSSC--EEEECHHHHT---TSCTTCEEEEEEECCSSSCEEEEEEEEECSC
T ss_pred eEEEEEEEe-cCCcEEEEECCCC--CEEECHHHHh---cCCCCCEEEEEEecCCCCeEEEEEEEEecCC
Confidence 588999887 6887777776654 4588877544 3778999999987643 35799988877754
No 41
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=71.61 E-value=17 Score=24.82 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=39.3
Q ss_pred eEEEEEEEEeCCCceEEEEeCCC-CEEEEEecccccccccccCCCCEEEEEeccC
Q 032460 69 WVHEGFITESLPNGMFRVRLDNE-DLILGYISGKIRQNFIRVLPGDRVRVEVSRY 122 (140)
Q Consensus 69 ie~~GvVik~l~n~~f~V~l~dG-~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~ 122 (140)
.++.|+|...- .|+=.|..+|| ..+-.|++.--. ..-.+.+||+|.+++..-
T Consensus 17 ~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~-~~~~L~~G~~V~F~v~~~ 69 (89)
T 1wfq_A 17 LRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNG-NLQDLKVGDDVEFEVSSD 69 (89)
T ss_dssp CEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSS-CTTTCCTTCCEEEEEEEC
T ss_pred cccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhC-ccCCCCCCCEEEEEEEEC
Confidence 35789999984 66667777776 789999987443 234699999999998643
No 42
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=71.42 E-value=5.6 Score=34.53 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=60.1
Q ss_pred CccccCCcCCCCceeccceeEeee---ccceEe--eeeehhhhhcccCCCcccc------cccCCcceEEEEEEEEe---
Q 032460 13 QPLLLPRHYLSPISFPINHVKFNV---NKEFVK--ITKIWTAIGAKKGGDRSSE------EGANSEKWVHEGFITES--- 78 (140)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~k~d~ie~~GvVik~--- 78 (140)
.+|..| |=|-|.=+-|++..-.. ..+.+. --..|.+----|+-+-... ++..-....+.|+|.+.
T Consensus 221 ~~~i~P-h~pdPVL~GIRG~~p~~l~~a~~~i~~e~~~~~~if~TNQgTD~Hl~~~~~i~~~~~~~~~~v~G~V~~~P~~ 299 (402)
T 3au7_A 221 VVVCIP-NTPCPVLYGIRGESVEALYKAMESVKTEPVDRRMIFVTNHATDMHLIGEEEVHRLENYRSYRLRGRVTLEPYD 299 (402)
T ss_dssp BCTTSC-CSSSSEEEEEEESCHHHHHHHHHHCCBSCCCCEEEEEECTTSCTTEEEGGGCSSCCTTCEEEEEEEEEEEEEE
T ss_pred EEEEEc-CCCCCEEEEecCCCHHHHHHHHHHhhcCCcceEEEEeccCCchHHhcccccccccccCceEEEEEEEecCcEe
Confidence 345555 77777777777754220 001111 1125666655555444222 22233456799999965
Q ss_pred CCCceEEEEeCC-CCEEEEE-ec--ccccccccccCCCCEEEEEe
Q 032460 79 LPNGMFRVRLDN-EDLILGY-IS--GKIRQNFIRVLPGDRVRVEV 119 (140)
Q Consensus 79 l~n~~f~V~l~d-G~~~lcr-I~--GKmRk~~IrI~vGDrV~VE~ 119 (140)
..+|+..+.+.| +..+.|- -+ |++|+---++.+||.|.|--
T Consensus 300 ~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G 344 (402)
T 3au7_A 300 IEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYG 344 (402)
T ss_dssp ETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEE
T ss_pred ccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEE
Confidence 568877777654 3344444 34 67876433589999998853
No 43
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=70.87 E-value=10 Score=29.01 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=49.3
Q ss_pred CCceeccceeEeeeccceEeeeeehhhhhcccCCCcccccccCCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEecccc
Q 032460 23 SPISFPINHVKFNVNKEFVKITKIWTAIGAKKGGDRSSEEGANSEKWVHEGFITESLPNGMFRVRLDNEDLILGYISGKI 102 (140)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKm 102 (140)
||+-+..+|+.--.. .....|.+.-+.. .++..++ ..+=|+|+|++. .++.+.+.+..|.... .--.++
T Consensus 24 PpvK~l~~QLr~~~~----~~~~~w~l~r~~~--g~~~l~~---s~VWmQG~VV~~-~~g~~~LdDgTG~~~v-~g~~~v 92 (150)
T 3mxn_B 24 PPLKVLAEQLRRDAE----GGPGAWRLSRAAA--GRGPLDL---AAVWMQGRVVMA-DRGEARLRDPSGDFSV-RGLERV 92 (150)
T ss_dssp CCEECCHHHHHHHEE----SCTTCCEECCTTT--TCCCEEC---SEEEEEEEEEEE-ETTEEEEEETTEEEEE-ECGGGS
T ss_pred CcHHHHHHHHHHHhh----CCCceEEEEeccc--CCcccee---EEEEEEeEEEEe-CCCeEEEECCCceEEE-eecccc
Confidence 456666666554322 2334676663321 1121111 123489999997 7888888776665433 334444
Q ss_pred cccccccCCCCEEEEE
Q 032460 103 RQNFIRVLPGDRVRVE 118 (140)
Q Consensus 103 Rk~~IrI~vGDrV~VE 118 (140)
-+.+-++.+|.+|-|-
T Consensus 93 p~g~p~l~~G~YVMV~ 108 (150)
T 3mxn_B 93 PRGRPCLVPGKYVMVM 108 (150)
T ss_dssp CCCSCCCSTTCEEEEE
T ss_pred CCCCcccCCCCEEEEE
Confidence 4444568899999885
No 44
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=69.55 E-value=7 Score=35.87 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=40.1
Q ss_pred eEEEEEEEEeCCCceEEEEeCC-CCEEEEEeccc---------------c--ccc----ccccCCCCEEEEEeccCCCC-
Q 032460 69 WVHEGFITESLPNGMFRVRLDN-EDLILGYISGK---------------I--RQN----FIRVLPGDRVRVEVSRYDTS- 125 (140)
Q Consensus 69 ie~~GvVik~l~n~~f~V~l~d-G~~~lcrI~GK---------------m--Rk~----~IrI~vGDrV~VE~sp~D~~- 125 (140)
-+..|+|+.+..+| +.|.+.+ |.+-+.+++-- + ++. ...+.+||.|.|.+..-|..
T Consensus 671 ~~~~g~V~~V~~~G-~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~ 749 (760)
T 2vnu_D 671 STETGYVIKVFNNG-IVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 749 (760)
T ss_dssp SEEEEEEEEEETTE-EEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC------
T ss_pred eEEEEEEEEEECCe-EEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECcc
Confidence 36899999997555 5588876 87777777531 1 111 35688999999999877765
Q ss_pred --eEEEEE
Q 032460 126 --KGRIIY 131 (140)
Q Consensus 126 --kGrIiy 131 (140)
+++|-.
T Consensus 750 ~~~~kI~l 757 (760)
T 2vnu_D 750 TSKRKAEL 757 (760)
T ss_dssp --CCEEEC
T ss_pred ccCCcEEE
Confidence 577743
No 45
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=68.43 E-value=16 Score=27.10 Aligned_cols=59 Identities=22% Similarity=0.144 Sum_probs=38.4
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEeccc----cc-----------ccccccCCCCEEEEEeccCCCC-----eEEE
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGK----IR-----------QNFIRVLPGDRVRVEVSRYDTS-----KGRI 129 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GK----mR-----------k~~IrI~vGDrV~VE~sp~D~~-----kGrI 129 (140)
.+.|+|+++...|. .|++. +..-+.+++=- +. ...-.+.+||.|.|.+...|.. .|+|
T Consensus 84 v~~G~V~~v~~~G~-fV~l~-~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p~~~~I 161 (187)
T 1go3_E 84 LIEGEVVDVVEFGS-FVRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRGSKI 161 (187)
T ss_dssp EEEEEEEEEETTEE-EEECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-----CEE
T ss_pred EEEEEEEEEeCcEE-EEEEc-CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCCCccEE
Confidence 48999999976664 57774 36667776522 21 2234588999999987655543 3466
Q ss_pred E
Q 032460 130 I 130 (140)
Q Consensus 130 i 130 (140)
.
T Consensus 162 ~ 162 (187)
T 1go3_E 162 A 162 (187)
T ss_dssp E
T ss_pred E
Confidence 5
No 46
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=67.71 E-value=18 Score=22.96 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=35.4
Q ss_pred EEEEEEEeCC-CceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEecc
Q 032460 71 HEGFITESLP-NGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 71 ~~GvVik~l~-n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
+.|+|...-. .|+=.+..+||..+-.|++-=-....-.+.+||+|.+++..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~ 53 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCCccEEEEHHHccccCCCCCCCCCEEEEEEEE
Confidence 5688888643 33445666788888889887544322259999999998763
No 47
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=66.90 E-value=8.1 Score=29.49 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=35.8
Q ss_pred ccCCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEe-----cccccccccccCCCCEEEEEeccC
Q 032460 63 GANSEKWVHEGFITESLPNGMFRVRLDNEDLILGYI-----SGKIRQNFIRVLPGDRVRVEVSRY 122 (140)
Q Consensus 63 ~~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI-----~GKmRk~~IrI~vGDrV~VE~sp~ 122 (140)
+|+..++ +.|+|++. .+..|.|.+.. ....|.+ .|.-++.+-.+.+||.|.-++...
T Consensus 4 ~P~~gDv-ViG~V~~v-~~~~~~VdI~~-~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~ 65 (175)
T 2ja9_A 4 IPSVNDF-VIGVIIGT-FSDSYKVSLQN-FSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTA 65 (175)
T ss_dssp CCCTTCE-EEEEEEEE-CSSEEEEESST-TSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEEC
T ss_pred cCCCcCE-EEEEEEEE-ECcEEEEEECC-CCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEe
Confidence 3444443 78999999 47888998743 1222332 344444444599999998666433
No 48
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=66.46 E-value=13 Score=35.44 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=42.8
Q ss_pred eEEEEEEEEeCCCceEEEEeCC-CCEEEEEecccc-----------------cc----cccccCCCCEEEEEeccCCC--
Q 032460 69 WVHEGFITESLPNGMFRVRLDN-EDLILGYISGKI-----------------RQ----NFIRVLPGDRVRVEVSRYDT-- 124 (140)
Q Consensus 69 ie~~GvVik~l~n~~f~V~l~d-G~~~lcrI~GKm-----------------Rk----~~IrI~vGDrV~VE~sp~D~-- 124 (140)
-+..|+|+.+..+| +.|.+.+ |.+-+.+++--- ++ ....+..||.|.|.+..-+.
T Consensus 888 e~~~g~V~~V~~~G-~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 888 STETGYVIKVFNNG-IVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp CEEEEEEEEECSSE-EEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred eEEEEEEEEEcCCe-EEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 36899999997555 5688876 888888876421 11 13568899999999886654
Q ss_pred C-eEEEE
Q 032460 125 S-KGRII 130 (140)
Q Consensus 125 ~-kGrIi 130 (140)
. +++|-
T Consensus 967 ~~~~kI~ 973 (977)
T 2wp8_J 967 TSKRKAE 973 (977)
T ss_dssp SCCCCCC
T ss_pred cCCCceE
Confidence 2 36653
No 49
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=66.35 E-value=23 Score=27.79 Aligned_cols=59 Identities=15% Similarity=0.039 Sum_probs=35.9
Q ss_pred ccCCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEec-----ccccccccccCCCCEEEEEeccCC
Q 032460 63 GANSEKWVHEGFITESLPNGMFRVRLDNEDLILGYIS-----GKIRQNFIRVLPGDRVRVEVSRYD 123 (140)
Q Consensus 63 ~~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~-----GKmRk~~IrI~vGDrV~VE~sp~D 123 (140)
+|+...+ +.|+|++.. +..+.|.+.+...=.-+++ +-.+.-+-.+.+||.|.+.+...+
T Consensus 54 ~p~~GDi-V~G~V~~v~-~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~ 117 (229)
T 2ba0_A 54 TPSVGDV-VIGIIREVA-ANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNID 117 (229)
T ss_dssp CCCTTCE-EEEEEEEEC-SSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEEC
T ss_pred cCCCCCE-EEEEEEEEe-CCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEEC
Confidence 4555544 889999995 6678898865433222322 111111223899999998865444
No 50
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=64.42 E-value=12 Score=24.82 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=35.2
Q ss_pred EEEEEEEeCC-CceEEEEeCCCCEEEEEecccc-cccccccCCCCEEEEEecc
Q 032460 71 HEGFITESLP-NGMFRVRLDNEDLILGYISGKI-RQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 71 ~~GvVik~l~-n~~f~V~l~dG~~~lcrI~GKm-Rk~~IrI~vGDrV~VE~sp 121 (140)
|.|+|...-. .|+=.+..+||..+-.+++.=. ....-.+.+||+|.+++..
T Consensus 1 ~~G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~ 53 (74)
T 2kcm_A 1 MKGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTP 53 (74)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEE
Confidence 4688887643 3344566678888888887654 3322469999999999763
No 51
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=64.11 E-value=9.7 Score=28.75 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=34.5
Q ss_pred EEEEEEEEeCC------Cc----eEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 70 VHEGFITESLP------NG----MFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 70 e~~GvVik~l~------n~----~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
+..|+|++.++ |. ..+|+|.||+++.|+|+|-= . -+.+-|.|+|+
T Consensus 32 q~kGv~l~v~~~~pKKPNSA~RK~arVrL~ngk~VtAyIPG~G-h---nlqEhs~VLVr 86 (135)
T 2vqe_L 32 FRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEG-H---NLQEHSVVLIR 86 (135)
T ss_dssp EEEEEESCCCEECCCTTCCCCEECCEEEETTSCEEEEECCSSC-C---CCCTTCEEEEE
T ss_pred CcCeEEEEEEecCCCCCchhheeEEEEEcCCCCEEEEEcCCCC-C---ccCcCCEEEEc
Confidence 46677776652 22 35889999999999999976 2 38899999997
No 52
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=63.68 E-value=9.4 Score=29.95 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=37.0
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecccccc-------cc--------cccCCCCEEEEEeccCCCC
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQ-------NF--------IRVLPGDRVRVEVSRYDTS 125 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk-------~~--------IrI~vGDrV~VE~sp~D~~ 125 (140)
.++|+|+.+..-|.| |++.. ..-+.|++ .|.. .. -.+.+||.|.|.+...|..
T Consensus 86 v~~G~V~~vt~fG~F-Velg~-~dGlVhiS-~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~ 153 (215)
T 2b8k_G 86 VVDGTVVSCSQHGFE-VQVGP-MKVFVTKH-LMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQ 153 (215)
T ss_dssp EEEEEEEEEETTEEE-EECTT-SEEEEEGG-GSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEE
T ss_pred EEEEEEEEEecceEE-EEecC-cEEEEEHH-HCCccceeccccccceeeccccEECCCCEEEEEEEEEEcC
Confidence 499999999766665 78755 77777877 4421 11 1288999999987655543
No 53
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=63.65 E-value=1.5 Score=40.53 Aligned_cols=61 Identities=28% Similarity=0.283 Sum_probs=0.0
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecc----cccccccccCCCCEEEEEeccCCCCeEEEEEE
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISG----KIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYR 132 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~G----KmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyR 132 (140)
.+.|+|+++...|.| |++.+|..=++|++= ++++-.-.+.+||.|.|.+...|. +|+|-.-
T Consensus 630 i~~G~V~~i~~fGaF-Vel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS 694 (723)
T 3cdi_A 630 VYTGKVTRIVDFGAF-VAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLS 694 (723)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEEEEEEecceEE-EEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEE
Confidence 479999999876665 667677666666652 222222248899999999887776 7887543
No 54
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=62.96 E-value=30 Score=22.79 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=35.6
Q ss_pred EEEEEEEEeCC-CceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEecc
Q 032460 70 VHEGFITESLP-NGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 70 e~~GvVik~l~-n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
++.|+|...-. .|+=.+..+||...-.+++.=-.. . .+.+||+|.+++..
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~~dg~~dFvH~s~i~~~-g-~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKDENGDNRYFHVIKVANP-D-LIKKDAAVTFEPTT 52 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEESSSCEEEEEGGGBSSG-G-GCCTTCEEEEEEEE
T ss_pred CcceEEEEEECCCCeEEEecCCCCceEEEHhHcccC-C-CCCCCCEEEEEEEe
Confidence 36788888643 344456667877767887765543 4 89999999999864
No 55
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=62.39 E-value=26 Score=23.79 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=33.0
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEeccc-cc---------c--cccccCCCCEEEEEe
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGK-IR---------Q--NFIRVLPGDRVRVEV 119 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GK-mR---------k--~~IrI~vGDrV~VE~ 119 (140)
...++|+++ .....+|.+.+|.... |++. |+ + -...+.+||.|.|+.
T Consensus 36 ~~~AvV~~v-~~~~~~v~~~~g~~~~--l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~~ 94 (106)
T 3d0f_A 36 ILAAVVLSA-TPGAVEAFRKNGETIR--ITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVKK 94 (106)
T ss_dssp CEEEEEEEE-ETTEEEEEETTSCEEE--ECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEEE
T ss_pred eEEEEEEEe-CCCeEEEEEcCCCeEE--EcHHHChhhhhcccccccchhccCCCCCEEEEEE
Confidence 366999998 5778899998887655 5542 22 0 112388999999984
No 56
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=62.15 E-value=24 Score=27.16 Aligned_cols=58 Identities=16% Similarity=0.014 Sum_probs=39.0
Q ss_pred EEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEE
Q 032460 72 EGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIY 131 (140)
Q Consensus 72 ~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiy 131 (140)
-|+|...+++++|.|..+||..-.++.+= |.. ...|.+|.-|.-.-...-.+-|.|+-
T Consensus 27 pG~V~~~~~~~~Y~V~FdDG~~k~v~~~d-ivv-~~~LP~~~~V~A~~~ddy~s~giI~~ 84 (156)
T 1ssf_A 27 SGKITRDVGAGKYKLLFDDGYECDVLGKD-ILL-CDPIPLDTEVTALSEDEYFSAGVVKG 84 (156)
T ss_dssp EEEEEECCTTTEEEEECTTSCEEEEETTT-EEE-ECCSCSSEEEEESSCTTTCEEEEEEE
T ss_pred ccEEEEeccCCEEEEEEcCCCeeEeeccc-eEE-EeccCCCcEEEEccCCccccccEEEe
Confidence 79999999999999999999887666442 211 12466677776552222235677774
No 57
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.87 E-value=26 Score=30.14 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=41.3
Q ss_pred eEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 69 WVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 69 ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
..+.|.|++.+.++.+-|....|..+...+.+.+.. ..+.+|++|.+.
T Consensus 102 ~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~--~~l~~g~~v~~~ 149 (437)
T 4b4t_L 102 GQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDR--SKLKKGVRVTLD 149 (437)
T ss_dssp CEEEEEEEECSSSSCEEEEETTSCEEEECBCSSSCT--TSCCTTCEEEEC
T ss_pred CceeeeheeeecCCcEEEEECCCCEEEEecccccCH--hhcCCCceeeEc
Confidence 357799999999999999999999999999998865 468899999763
No 58
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=61.56 E-value=15 Score=30.19 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=38.6
Q ss_pred ccCCcceEEEEEEEEeCCCceEEEEeCC---CCEEEEEecccccccccccCCCCEEEEEeccCC
Q 032460 63 GANSEKWVHEGFITESLPNGMFRVRLDN---EDLILGYISGKIRQNFIRVLPGDRVRVEVSRYD 123 (140)
Q Consensus 63 ~~k~d~ie~~GvVik~l~n~~f~V~l~d---G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D 123 (140)
.|+...+ +.|+|++. ....|.|.... +-...--++|-.++.+-.+.+||.|.-++...+
T Consensus 124 iP~vGDi-VIG~Vt~v-~~~~~~VdI~s~~~a~L~~~~f~Gatk~~r~~f~~GDlV~ArV~s~~ 185 (289)
T 2nn6_G 124 VPVKGDH-VIGIVTAK-SGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVAN 185 (289)
T ss_dssp CCCSSEE-EEEEEEEE-ETTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECC
T ss_pred CCCCCCE-EEEEEEEE-eCcEEEEEECCCceeEEehhhcCcchhhhhhhcCCCCEEEEEEEEcC
Confidence 5666554 78999999 58899998732 332222244544444455999999997765443
No 59
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=60.44 E-value=21 Score=28.42 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=35.9
Q ss_pred ccCCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEe---ccccc-c-ccc--ccCCCCEEEEEeccCCC
Q 032460 63 GANSEKWVHEGFITESLPNGMFRVRLDNEDLILGYI---SGKIR-Q-NFI--RVLPGDRVRVEVSRYDT 124 (140)
Q Consensus 63 ~~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI---~GKmR-k-~~I--rI~vGDrV~VE~sp~D~ 124 (140)
.|+... .+.|+|+++. +..+.|.+..+..=+-++ +++-. . ..+ .+.+||.|.+.+...+.
T Consensus 71 ~p~~GD-iV~G~V~~v~-~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~ 137 (251)
T 2je6_I 71 YPKIND-IVIGLVEDVE-IYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR 137 (251)
T ss_dssp CCCTTC-EEEEEEEEEC-SSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET
T ss_pred CCCCCC-EEEEEEEEEe-CceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC
Confidence 455544 4899999995 667788875533322232 33211 1 111 48999999988754443
No 60
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=59.68 E-value=13 Score=27.46 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=35.4
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEeccccc-------ccc--------cccCCCCEEEEEeccCCC
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIR-------QNF--------IRVLPGDRVRVEVSRYDT 124 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmR-------k~~--------IrI~vGDrV~VE~sp~D~ 124 (140)
.++|+|+++..-|.| |++.. ..-+.|++ .|. .+. -.+.+||.|.|.+...|.
T Consensus 86 v~~G~V~~v~~fG~F-V~l~~-~dglvhis-~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~ 152 (171)
T 1y14_B 86 VVDGTVVSCSQHGFE-VQVGP-MKVFVTKH-LMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCIS 152 (171)
T ss_dssp EEEEEEEEEETTEEE-EEETT-EEEEEEGG-GSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEE
T ss_pred EEEEEEEEEecCEEE-EEecC-eEEEEEHH-HCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEc
Confidence 499999999766655 77765 67777777 331 111 128899999998765444
No 61
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=59.55 E-value=32 Score=22.02 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=35.2
Q ss_pred EEEEEEEeCC-CceEEEEeCC-CCEEEEEecccccccccccCCCCEEEEEecc
Q 032460 71 HEGFITESLP-NGMFRVRLDN-EDLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 71 ~~GvVik~l~-n~~f~V~l~d-G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
..|+|...-. .|+=.+..+| |..+-.|++.=-....-.+.+||+|.+++..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~ 54 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTT 54 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGGSSCCTTCEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCCCCCCCCCEEEEEEEE
Confidence 5688887643 3343455566 6889999987654322369999999998763
No 62
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=58.97 E-value=10 Score=24.24 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=34.2
Q ss_pred EEEEEEEeCC-CceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEecc
Q 032460 71 HEGFITESLP-NGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 71 ~~GvVik~l~-n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
|.|+|...-. .|+=.+..+||..+-.|++.=.....-.+.+||+|.+++..
T Consensus 1 m~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~ 52 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQE 52 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSCCCCCSSSEEEEEEEC
T ss_pred CcEEEEEEECCCCEEEEecCCCceEEEEhHHccccCCCCCCCCCEEEEEEEE
Confidence 4577777643 23334556778888888876544322469999999999764
No 63
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.51 E-value=20 Score=31.19 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=40.9
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
.+.|.|++.+.++.+-|....|..+...+.+.+-+ ..+.+||+|.+.
T Consensus 104 ~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~--~~l~~~~~v~l~ 150 (437)
T 4b4t_I 104 LSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDK--ELLEPGCSVLLH 150 (437)
T ss_dssp EEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCG--GGCCTTCEEEEC
T ss_pred ceeEEEEEEecCCEEEEEcCCCCEEEEecccccCH--hHccCCcEEEEe
Confidence 46799999999999999998899999999998865 468899999763
No 64
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=56.68 E-value=35 Score=25.55 Aligned_cols=55 Identities=13% Similarity=0.005 Sum_probs=32.2
Q ss_pred ccCCcceEEEEEEEEeCCCceEEEEeCC----------CCEEEEEecc----cccccccccCCCCEEEEEec
Q 032460 63 GANSEKWVHEGFITESLPNGMFRVRLDN----------EDLILGYISG----KIRQNFIRVLPGDRVRVEVS 120 (140)
Q Consensus 63 ~~k~d~ie~~GvVik~l~n~~f~V~l~d----------G~~~lcrI~G----KmRk~~IrI~vGDrV~VE~s 120 (140)
.|+ . -.+.|+|+++. +..+.|.+.. +..=+.|++= +...-+-.+.+||.|.+++.
T Consensus 55 ~p~-G-diV~G~V~~V~-~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi 123 (179)
T 3m7n_A 55 IVK-G-DVVLGRVVDLR-NSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVI 123 (179)
T ss_dssp CCT-T-CEEEEEEEEEC-SSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEE
T ss_pred cCC-C-CEEEEEEEEEe-CCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEE
Confidence 445 3 35899999996 5666777643 3333333321 11111123899999998865
No 65
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=56.50 E-value=14 Score=31.92 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=40.1
Q ss_pred EEEEEEEEeCCCceEEEEeCC-CCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEec
Q 032460 70 VHEGFITESLPNGMFRVRLDN-EDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLR 134 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~d-G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~ 134 (140)
+..|+|+++ .++...|.+.+ |-. . +. +-....||+|.|.+..-|..++.|.++|.
T Consensus 406 ~f~g~vv~l-~~~~glV~v~~l~~d--~------~~-~~~~~lGd~V~V~v~~vd~~~~~i~f~~~ 461 (469)
T 2r7d_A 406 VWDAVVVDR-RGAQATLLIPDLAFD--V------QV-NTPAAPGTALQVQFADIDLPQMRVRARSV 461 (469)
T ss_dssp CEEEEEEEE-ETTEEEEEEGGGTEE--E------EE-ECCCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred EEEEEEEEE-eCcEEEEEECCCCeE--E------ec-CCcCCCCCEEEEEEEEEccCCCEEEEEEE
Confidence 478999986 36667777754 322 1 11 12477899999999988999999998885
No 66
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=53.94 E-value=17 Score=35.54 Aligned_cols=62 Identities=10% Similarity=-0.130 Sum_probs=43.1
Q ss_pred eEEEEEEEEeCCCceEEEEeCCCCEEEEEecc---cc--cccccccCCCCEEEEEeccCCCCeEEEEE
Q 032460 69 WVHEGFITESLPNGMFRVRLDNEDLILGYISG---KI--RQNFIRVLPGDRVRVEVSRYDTSKGRIIY 131 (140)
Q Consensus 69 ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~G---Km--Rk~~IrI~vGDrV~VE~sp~D~~kGrIiy 131 (140)
-.+.|+|+.+...|. .|+++.|..=++|++= .. ..-.-.+.+||.|.|.+..-|..+++|..
T Consensus 904 ~iv~G~V~~V~~fGa-FV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~L 970 (1219)
T 3psi_A 904 SIIPVRVERFWHNDI-ICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEV 970 (1219)
T ss_dssp CEEEEEEEEECSSCE-EEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEE
T ss_pred CEEEEEEEEEecceE-EEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEE
Confidence 359999999975554 5788888877777652 21 11112388999999998777766777754
No 67
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=53.55 E-value=4.4 Score=37.77 Aligned_cols=63 Identities=32% Similarity=0.428 Sum_probs=45.1
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEeccccccccc-----ccCCCCEEEEEeccCCCCeEEEEEEec
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFI-----RVLPGDRVRVEVSRYDTSKGRIIYRLR 134 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~I-----rI~vGDrV~VE~sp~D~~kGrIiyRy~ 134 (140)
++.|+|+.+...|.| |.+.++..=+++++- |...++ .+.+||.|.|.+..-|..+++|-.-..
T Consensus 657 iv~G~V~~V~~fGaF-V~l~~~~eGLVhiS~-Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk 724 (785)
T 3bzc_A 657 VLEGVVTNVTNFGAF-VDIGVHQDGLVHISA-LSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMR 724 (785)
T ss_dssp BCCCEEEEEETTEEE-EECSSSSEEEEETTT-SCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCS
T ss_pred EEEEEEEEEecCCeE-EEeCCCcEEEEEHHH-cCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 488999999766655 788777777777763 211222 388999999988777777888876543
No 68
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=52.57 E-value=3.8 Score=25.17 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=12.1
Q ss_pred eeehhhhhcccCCCc
Q 032460 44 TKIWTAIGAKKGGDR 58 (140)
Q Consensus 44 ~~~~~~~~~~~~~~~ 58 (140)
||+|+.|+-|-.|+-
T Consensus 2 TP~WR~vs~kP~GA~ 16 (40)
T 2l1q_A 2 TPFWRGVSLRPIGAS 16 (40)
T ss_dssp CCTTSSCSSBCTTSB
T ss_pred cchhhhhcCCccchh
Confidence 799999998776653
No 69
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=52.10 E-value=16 Score=25.91 Aligned_cols=41 Identities=20% Similarity=0.145 Sum_probs=29.4
Q ss_pred CCCceEEEEe-CCC-CEEEEEecccccccccccCCCCEEEEEec
Q 032460 79 LPNGMFRVRL-DNE-DLILGYISGKIRQNFIRVLPGDRVRVEVS 120 (140)
Q Consensus 79 l~n~~f~V~l-~dG-~~~lcrI~GKmRk~~IrI~vGDrV~VE~s 120 (140)
+++-.|+-.+ .+| ..+.--|+-.+|+ .+.+.+||.|.|++.
T Consensus 60 I~g~~~~tsL~p~g~G~~~Lpvk~~vRk-a~g~~~GD~V~V~L~ 102 (104)
T 2d9r_A 60 FDGYPYTGYIVRMGLPCHILGLRQDIRR-AIGKQPGDSVYVTLL 102 (104)
T ss_dssp ETTEEEEEEEEESSTTCEEEEECHHHHH-HHTCCTTSEEEEEEE
T ss_pred ECCEEEEEEEEECCCCcEEEEecHHHHH-HcCCCCCCEEEEEEE
Confidence 3455555444 333 4677788888887 688999999999875
No 70
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=52.07 E-value=45 Score=21.48 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=34.8
Q ss_pred EEEEEEEeCC-CceEEEEeCCC-CEEEEEecccccccccccCCCCEEEEEecc
Q 032460 71 HEGFITESLP-NGMFRVRLDNE-DLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 71 ~~GvVik~l~-n~~f~V~l~dG-~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
+.|+|...-. .|+=.+..+|| ..+-.|++.=-....-.+.+||+|.+++..
T Consensus 6 ~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~ 58 (71)
T 3i2z_B 6 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITN 58 (71)
T ss_dssp EEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEE
T ss_pred ccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccCcCCCCCCEEEEEEEE
Confidence 5699988643 34445666666 788888886443222259999999998764
No 71
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=51.94 E-value=31 Score=26.08 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=36.0
Q ss_pred EEEEEEEEeCCCc---eEEEEeCCCCEEEEEecccccccccccCCCCEEEEEecc
Q 032460 70 VHEGFITESLPNG---MFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 70 e~~GvVik~l~n~---~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
.+.|+|+++..++ ...+++.+|..+.|.|.-.- ...+.+|+.|.+.+.+
T Consensus 205 ~l~g~V~~i~~~~~~~~v~l~l~~~~~l~a~it~~s---~l~L~~G~~v~a~ika 256 (265)
T 1b9m_A 205 QLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNE---ATSLQQGQNVTAYFNA 256 (265)
T ss_dssp EEEEEEEEEEECSSEEEEEEECTTSCEEEEEEEHHH---HTTCCTTCEEEEEECG
T ss_pred EEEEEEEEEEECCceEEEEEEeCCCCEEEEEECChh---hcCCCCCCEEEEEEcc
Confidence 5789988874333 34555567899999998555 4569999999987654
No 72
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=51.57 E-value=46 Score=22.41 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=31.8
Q ss_pred eEEEEEEEEeCCCc---eEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCC
Q 032460 69 WVHEGFITESLPNG---MFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYD 123 (140)
Q Consensus 69 ie~~GvVik~l~n~---~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D 123 (140)
-.+.|+|.+.-+++ ...+.+.+|....+.|.-+-.. ...+.+|+.|.+.+.|.+
T Consensus 10 N~l~g~V~~~~~~~~~~~v~l~~~~~~~l~~~it~~s~~-~~~l~~g~~v~~~irp~~ 66 (145)
T 1h9m_A 10 NVFKGTVSALKEGAVNAEVDILLGGGDKLAAVVTLESAR-SLQLAAGKEVVAVVKAPW 66 (145)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEESSSCEEEEEEEHHHHH-HTTCCTTCEEEEEECGGG
T ss_pred eEEEEEEEEEEcCCceEEEEEEECCCCEEEEEeCHHHHH-hcCCCCCCEEEEEEccce
Confidence 35889998864332 5666666667777765422111 123567777777665544
No 73
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=51.32 E-value=62 Score=22.92 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=20.4
Q ss_pred cCCCCEEEEEeccCCCCeEEEEEEecCCCC
Q 032460 109 VLPGDRVRVEVSRYDTSKGRIIYRLRNKIS 138 (140)
Q Consensus 109 I~vGDrV~VE~sp~D~~kGrIiyRy~r~~~ 138 (140)
+.+||.|.++.......+=.|-+|-....+
T Consensus 92 L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 92 LRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp CCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred CCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 999999999976533345566666544333
No 74
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=51.27 E-value=36 Score=26.00 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=43.2
Q ss_pred ceEEEEEEEEeCC-CceEEEEeCCCC---EEE-EEecccccccccccCCCCEEEEEeccCCCCeEEEEEE
Q 032460 68 KWVHEGFITESLP-NGMFRVRLDNED---LIL-GYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYR 132 (140)
Q Consensus 68 ~ie~~GvVik~l~-n~~f~V~l~dG~---~~l-crI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyR 132 (140)
.....|+|.++-+ .+..+|++.+-. ... ..-.|..+- ...+.+||.|.|-+..-|++.|.|+--
T Consensus 16 nlir~G~V~~vd~~~~rvrV~~~~~~t~wl~~~~~~ag~~~~-~~~P~vGeqV~v~f~~Gd~~~gvVlg~ 84 (211)
T 3qr8_A 16 NMIRTGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSRT-WWAPSVGEQVLILAVGGELDTAFVLPG 84 (211)
T ss_dssp HHEEEEEEEEEETTTTEEEEEETTEECCCEEECCSCBSSSBC-CCCCCTTCEEEEEECCTTTCCEEEEEE
T ss_pred hCcEEEEEEEEECCCCEEEEEeCCccceeEEeEcccccCCce-EeCCCCCCEEEEEeCCCccCccEEEee
Confidence 4557899999843 467888875421 122 223466543 334999999999877678889999864
No 75
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.60 E-value=41 Score=28.79 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=41.3
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEec
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVS 120 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~s 120 (140)
...|.|++.+.++.+-|....|..+...+...+... .+.+|++|.+.-.
T Consensus 70 ~~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~--~l~~~~~v~l~~~ 118 (405)
T 4b4t_J 70 SYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVK--DLKASQRVCLRSD 118 (405)
T ss_dssp EEEEEEEEECTTSCEEEEESSSCEEEECCCTTSCTT--TCCSSCEEEEETT
T ss_pred ceEEEEEEEecCCeEEEEeCCCCEEEEecccccCHh--hCCCcceeeeecc
Confidence 467999999999999999988899999998888653 5889999977543
No 76
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Probab=49.64 E-value=28 Score=26.42 Aligned_cols=48 Identities=27% Similarity=0.292 Sum_probs=35.6
Q ss_pred EEEEEEEEeCC------Cc----eEEEEe-CCCCEEEEEecccccccccccCCCCEEEEEe
Q 032460 70 VHEGFITESLP------NG----MFRVRL-DNEDLILGYISGKIRQNFIRVLPGDRVRVEV 119 (140)
Q Consensus 70 e~~GvVik~l~------n~----~f~V~l-~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~ 119 (140)
+..|+|++.++ |. -.+|+| .||+++.|+|+|-=-.+ -+.+-|.|+|+-
T Consensus 47 q~kGIvl~~~~~~pKkPNSA~RK~arVqL~kNgk~vtAyIPg~G~l~--~lqEh~~VLVrG 105 (142)
T 2xzm_L 47 HAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLN--FLAENDEVLVAG 105 (142)
T ss_dssp EEEEEEEEEEEEECCTTCCCEEEEEEEEETTTCCEEEEECCSSSGGG--TCCTTCEEEEEE
T ss_pred ccceEEEEEEecccCCCCcccccEEEEEEecCCeEEEEEeCCCCccc--ccccCCEEEEEe
Confidence 46677776542 22 467889 59999999999976533 388899999974
No 77
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=49.50 E-value=41 Score=25.19 Aligned_cols=51 Identities=18% Similarity=0.029 Sum_probs=36.7
Q ss_pred eEEEEEEEEeCC-CceEEEEeCCC-CEEEEEecccccccccccCCCCEEEEEecc
Q 032460 69 WVHEGFITESLP-NGMFRVRLDNE-DLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 69 ie~~GvVik~l~-n~~f~V~l~dG-~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
-++.|+|...-. .|+=.|..+|| +.+-.|++.-- .. -.+.+||+|.+++..
T Consensus 61 ~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~-~~-~~L~eGq~V~Fev~~ 113 (147)
T 3aqq_A 61 PVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVE-GE-YVPVEGDEVTYKMCS 113 (147)
T ss_dssp CCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEE-SS-BCCCTTCEEEEEEEE
T ss_pred CccceEEEEEeCCCCeEEeccCCCCccEEEEeeeec-CC-CcCCCCCEEEEEEEe
Confidence 467899998743 34445666665 88999988743 32 379999999999853
No 78
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.26 E-value=28 Score=26.53 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=28.1
Q ss_pred eEEEEeC-CCCEEEEEecccccccccccCCCCEEEEEe
Q 032460 83 MFRVRLD-NEDLILGYISGKIRQNFIRVLPGDRVRVEV 119 (140)
Q Consensus 83 ~f~V~l~-dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~ 119 (140)
..+|+|. ||+++.|+|+|-=-.+ -|.+-|.|+|+-
T Consensus 72 ~arV~L~kngk~vtAyIPg~Ghln--~lqEh~~VLV~G 107 (147)
T 3j20_N 72 AVRVQLIKNGKVVTAFCPGDGAIK--FIDEHDEVIIEG 107 (147)
T ss_dssp EEEEEETTTCCEEEEECCSSSGGG--TCCTTCEEEEEE
T ss_pred EEEEEEccCCcEEEEEcCCchhhc--ccccCCEEEEee
Confidence 3578885 9999999999976543 388899999974
No 79
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=49.26 E-value=28 Score=24.84 Aligned_cols=43 Identities=9% Similarity=-0.174 Sum_probs=24.3
Q ss_pred EEEEEEEeCCC-ceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 71 HEGFITESLPN-GMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 71 ~~GvVik~l~n-~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
+-|+|+++.++ +.-.|. ..|..+...+. ... --+.+||+|+|-
T Consensus 26 IP~kVveI~~~~~~A~Vd-~~Gv~reV~l~---Lv~-e~~~vGDyVLVH 69 (103)
T 3d3r_A 26 IPSQVVAVDNERQSVTVD-TLGVRRDVSSH---LMT-EPLAIGDYVLIH 69 (103)
T ss_dssp CCEEEEEEETTTTEEEEE-ETTEEEEEECT---TBS-SCCCTTCEEEEE
T ss_pred cCEEEEEEeCCCCEEEEE-cCCEEEEEEEE---eec-CCCCCCCEEEEe
Confidence 34788887532 344443 34666655553 110 025689999984
No 80
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=49.09 E-value=47 Score=24.34 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=37.5
Q ss_pred CCcceEEEEEEEEeCC-CceEEEEeC--------CCCEEEEEecccccccccccCCCCEEEEEecc
Q 032460 65 NSEKWVHEGFITESLP-NGMFRVRLD--------NEDLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 65 k~d~ie~~GvVik~l~-n~~f~V~l~--------dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
.++...+.|+|...-. .|+=.|..+ +|..+-.|++.--....-.+.+||.|.+++..
T Consensus 4 ~~~l~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~eG~~V~f~~~~ 69 (148)
T 3ts2_A 4 EPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKK 69 (148)
T ss_dssp --CCEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCCTTCEEEEEEEE
T ss_pred ccccccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCCCCCEEEEEEEE
Confidence 4567789999999742 233334433 46788889886543322259999999998764
No 81
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=48.58 E-value=16 Score=30.29 Aligned_cols=56 Identities=21% Similarity=0.176 Sum_probs=33.4
Q ss_pred ccCCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEec------ccccccc--------cccCCCCEEEEEec
Q 032460 63 GANSEKWVHEGFITESLPNGMFRVRLDNEDLILGYIS------GKIRQNF--------IRVLPGDRVRVEVS 120 (140)
Q Consensus 63 ~~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~------GKmRk~~--------IrI~vGDrV~VE~s 120 (140)
.|+...+ +.|+|+++. +..+.|.+.....-.++++ |-+|++. -.+.+||.|..++.
T Consensus 92 ~P~vGDv-ViG~Vt~V~-~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVi 161 (308)
T 2nn6_H 92 IGEVGDI-VVGRITEVQ-QKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQ 161 (308)
T ss_dssp CCCSSBC-CCEEEEEEE-TTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEE
T ss_pred CCCCCCE-EEEEEEEEe-CceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEE
Confidence 5665554 789999995 7778898854333344542 3233321 13899999986654
No 82
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Probab=47.08 E-value=32 Score=26.17 Aligned_cols=48 Identities=25% Similarity=0.276 Sum_probs=36.3
Q ss_pred eEEEEEEEEeCC------C----ceEEEEe-CCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 69 WVHEGFITESLP------N----GMFRVRL-DNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 69 ie~~GvVik~l~------n----~~f~V~l-~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
-+..|+|++.++ | -..+|+| .||+++.|+|+|-=-.+ -|.+-|.|+|+
T Consensus 47 pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~G~l~--~lqEh~~VLV~ 105 (145)
T 3u5c_X 47 SHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLN--FVDENDEVLLA 105 (145)
T ss_dssp SEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCEEEEECCSSSCGG--GCCTTCEEEEE
T ss_pred CccCeEEEEEeecccCCCCccceeEEEEEEccCCCEEEEEeCCCCccc--cCCcCCEEEEE
Confidence 356677777653 2 3578999 49999999999976433 38889999997
No 83
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=47.02 E-value=36 Score=24.91 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=34.3
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecccc----c---cc----------ccccCCCCEEEEEeccCCC
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKI----R---QN----------FIRVLPGDRVRVEVSRYDT 124 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKm----R---k~----------~IrI~vGDrV~VE~sp~D~ 124 (140)
.++|+|+.+...|.| |++.. ..-+.+++ .| + .. +-.+.+||.|.|.+...|.
T Consensus 84 v~~G~V~~v~~fG~f-V~l~~-~~glvhis-~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~ 152 (172)
T 2c35_B 84 VVDAVVTQVNKVGLF-TEIGP-MSCFISRH-SIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152 (172)
T ss_dssp EEEEEEEEEETTEEE-EEETT-EEEEEEGG-GSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEE
T ss_pred EEEEEEEEEeCCEEE-EEECC-EEEEEEHH-HCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEc
Confidence 599999999766655 77743 34666666 22 1 11 2248889999998765554
No 84
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=45.37 E-value=68 Score=21.63 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=37.7
Q ss_pred EEEEEEEEeCCCceEEEEeCC-CCEEEEEecccccccccccCCCCEEEEEecc
Q 032460 70 VHEGFITESLPNGMFRVRLDN-EDLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~d-G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
...|+|.+.- .|+=.+..+| |..+-.|++-=-.. .-.+.+||+|.+++..
T Consensus 18 ~~~G~Vk~f~-kGfGFI~~ddgg~DvFvH~S~i~~~-~~~L~~G~~V~F~~~~ 68 (88)
T 2yty_A 18 RLLGYVATLK-DNFGFIETANHDKEIFFHYSEFSGD-VDSLELGDMVEYSLSK 68 (88)
T ss_dssp CEEEEEEEEC-SSEEEEECSSSSCEEEEETTTCCSC-TTTCCTTCEEEECCCC
T ss_pred ceeEEEEEEE-CCccEEecCCCCceEEEEEhhhccc-cCcCCCCCEEEEEEEE
Confidence 3679999985 7777777777 58899997754433 3469999999998753
No 85
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=43.66 E-value=65 Score=21.52 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=27.7
Q ss_pred EEEEEEEeCC-----CceEEEEe----CCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 71 HEGFITESLP-----NGMFRVRL----DNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 71 ~~GvVik~l~-----n~~f~V~l----~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
..+.|++++| +....|++ +.|..+...++|=+|. ||.+.+.
T Consensus 8 ~~A~VikVlGRtGs~G~~tQVrv~~l~d~~r~i~RnVkGPVR~-------GDIl~L~ 57 (67)
T 3u5c_c 8 TLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRE-------NDILVLM 57 (67)
T ss_dssp EEEEEEEEEEEESSSCCEEEEEEEESSSCSCEEEEECSSCCCT-------TCEEEES
T ss_pred EEEEEEEEecCCcCcccEEEEEEEEecCCCcEEEecccCCccc-------CCEEEEe
Confidence 4577888775 33444444 3578888888887764 9998764
No 86
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=43.25 E-value=36 Score=27.84 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=35.9
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEE
Q 032460 71 HEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRV 117 (140)
Q Consensus 71 ~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~V 117 (140)
..|+|++++.++...|. ..|..+...++-.+... .+.||++|.+
T Consensus 100 ~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~e--~LkPG~rVaL 143 (251)
T 3m9b_A 100 GYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDAA--SLKKGQTVRL 143 (251)
T ss_dssp EEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCTT--TSCSSCEEEE
T ss_pred eEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCHH--HCCCCCEEEe
Confidence 56999999888888888 58899999999877643 5788988854
No 87
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=42.98 E-value=5.1 Score=37.11 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEec----ccccccccccCCCCEEEEEeccCCCCeEEEEEE
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYIS----GKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYR 132 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~----GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyR 132 (140)
.+.|+|+++...|. .|++.+|..=++|++ .++.+-.-.+.+||.|.|.+...|. +|+|-.-
T Consensus 640 v~~G~V~~I~~fGa-FVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS 704 (726)
T 4aid_A 640 IYDGKVVKVVDFGA-FVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLS 704 (726)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEEEEEEeccEE-EEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEE
Confidence 48999999975554 566767766666665 2232222248999999999887776 6887543
No 88
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=42.13 E-value=54 Score=27.62 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=35.3
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCC
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYD 123 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D 123 (140)
.++|+|.+.- ++.+.|.+ | ...+.++-.=...+-.+.+||+|.|-+...+
T Consensus 137 IV~G~V~ri~-~~~v~VDl--G-k~EgiLp~sE~ip~E~~~vGD~Vkv~V~~V~ 186 (344)
T 1hh2_P 137 VTTAEVIRVM-GEWADIRI--G-KLETRLPKKEWIPGEEIKAGDLVKVYIIDVV 186 (344)
T ss_dssp EEEEEEEEEC-SSEEEEEE--T-TEEEEEEGGGSCTTCCCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEe-cCcEEEEe--C-CeEEEEeHHHcCCCcCCCCCCEEEEEEEEEE
Confidence 5999999985 66677876 4 3567666543323446889999999876544
No 89
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=42.03 E-value=3.2 Score=38.55 Aligned_cols=61 Identities=23% Similarity=0.224 Sum_probs=31.7
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecc--------cccccccccCCCCEEEEEeccCCCCeEEEEEE
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISG--------KIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYR 132 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~G--------KmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyR 132 (140)
.+.|+|+++...|.| |++.+|..=++|++= ++.+-.-.+.+||.|.|.+...|. +|+|-.-
T Consensus 670 i~~G~V~~i~~fGaF-V~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS 738 (757)
T 1e3p_A 670 RILGSVVKTTTFGAF-VSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLI 738 (757)
T ss_dssp ---CBEEECC-CSCE-ECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SCC----
T ss_pred EEEEEEEEccccEEE-EEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEE
Confidence 489999999877765 677666555555442 222212238899999999887787 7887543
No 90
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=41.88 E-value=25 Score=23.36 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=35.1
Q ss_pred EEEEEEeCCCceEEEEeCCC--CEEEEEecccccccccccCCCCEEEEEecc
Q 032460 72 EGFITESLPNGMFRVRLDNE--DLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 72 ~GvVik~l~n~~f~V~l~dG--~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
.|+|... ..|+=.+..+|| ..+-.|++.-- . .-.+.+||+|.+++..
T Consensus 10 ~G~V~~~-~KGfGFI~~ddg~g~DvFvH~s~i~-~-g~~l~~G~~V~F~v~~ 58 (79)
T 2ytv_A 10 RATVECV-KDQFGFINYEVGDSKKLFFHVKEVQ-D-GIELQAGDEVEFSVIL 58 (79)
T ss_dssp CEEEEEC-CSSEEEESCCCSSSSSEEEETTTCC-S-SCCCCTTCEEECBCEE
T ss_pred cEEEEEe-cccceeEeCCCCCCCcEEEEhHHcC-C-CCcCCCCCEEEEEEEE
Confidence 4888876 477767777766 78899988755 3 3469999999988754
No 91
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=41.28 E-value=15 Score=26.75 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=20.5
Q ss_pred ccCCCCEEEEEeccCCCCeEEEEEEecCC
Q 032460 108 RVLPGDRVRVEVSRYDTSKGRIIYRLRNK 136 (140)
Q Consensus 108 rI~vGDrV~VE~sp~D~~kGrIiyRy~r~ 136 (140)
-+.|||.+.+++.- ...++.|.++|...
T Consensus 77 ~V~PGD~l~l~v~~-~~~~~~l~F~~~~~ 104 (129)
T 3esi_A 77 PILPGKTLRLVLIW-HAGKQSLTFSYSIL 104 (129)
T ss_dssp CCCTTCEEEEEEEE-ETTTTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEE-EecCCcEEEEEEeC
Confidence 38899999888763 34567788887653
No 92
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=41.24 E-value=49 Score=23.37 Aligned_cols=46 Identities=9% Similarity=-0.017 Sum_probs=35.4
Q ss_pred cceEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 67 EKWVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 67 d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
..+.+-|+|++.- ++.+.+.|.||..+.+++..- .-...|.+|+|.
T Consensus 19 ~~VrivGkV~~~~-g~~~~l~s~d~~~Vtv~l~~~-----~~~~~~~~vEVi 64 (114)
T 4gop_A 19 QTVRIVGKVHKVT-GNTLLMQTSDLGNVEIAMTPD-----SDVSSSTFVEVT 64 (114)
T ss_dssp SEEEEEEEEEEEE-TTEEEEECTTSCEEEEECCSS-----CCGGGCSEEEEE
T ss_pred CeEEEEEEEeeeC-CCEEEEEeCCCCEEEEEeCCC-----CCcccCcEEEEE
Confidence 3577889999985 699999999999999887632 224467788765
No 93
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=39.86 E-value=67 Score=22.96 Aligned_cols=34 Identities=12% Similarity=-0.014 Sum_probs=28.8
Q ss_pred cceEEEEEEEEeCC-CceEEEEeCCCCEEEEEecc
Q 032460 67 EKWVHEGFITESLP-NGMFRVRLDNEDLILGYISG 100 (140)
Q Consensus 67 d~ie~~GvVik~l~-n~~f~V~l~dG~~~lcrI~G 100 (140)
..+.+-|+|++.-+ ++.+.+++.||+.+.+.+..
T Consensus 23 k~VrivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~ 57 (121)
T 3kdf_A 23 KPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELME 57 (121)
T ss_dssp CEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSS
T ss_pred CeEEEEEEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Confidence 35778899999864 66899999999999999874
No 94
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=39.48 E-value=23 Score=22.48 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=19.4
Q ss_pred EEecccccccccccCCCCEEEEEec
Q 032460 96 GYISGKIRQNFIRVLPGDRVRVEVS 120 (140)
Q Consensus 96 crI~GKmRk~~IrI~vGDrV~VE~s 120 (140)
-.|+-.+|+ ...|.+||.|.|+..
T Consensus 24 ItIPkeiR~-~Lgi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 24 VVIPIELRR-TLGIAEKDALEIYVD 47 (59)
T ss_dssp EECCHHHHH-HTTCCTTCEEEEEEE
T ss_pred EEeCHHHHH-HcCCCCCCEEEEEEE
Confidence 357878876 578999999998865
No 95
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=39.47 E-value=49 Score=23.35 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=35.3
Q ss_pred ceEEEEEEEEeCC----------CceEEEEeCCCCEEEEEeccccccccc--ccCCCCEEEEEeccCCCCeEEEE
Q 032460 68 KWVHEGFITESLP----------NGMFRVRLDNEDLILGYISGKIRQNFI--RVLPGDRVRVEVSRYDTSKGRII 130 (140)
Q Consensus 68 ~ie~~GvVik~l~----------n~~f~V~l~dG~~~lcrI~GKmRk~~I--rI~vGDrV~VE~sp~D~~kGrIi 130 (140)
.-..+|.|+++-+ .+...++..|+.. .-++..+|--+=. +|.+||.+.++ .+.|+|.
T Consensus 11 keVyEGEV~ei~~~~~~~~~~~~~~~itLkT~d~ek-~l~lg~~i~e~L~kekV~~GDVI~Id-----~~sG~V~ 79 (95)
T 2cqa_A 11 TEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMET-IYDLGTKMIESLTKDKVQAGDVITID-----KATGKIS 79 (95)
T ss_dssp CSEEEEEEEEEEEECTTSSSSSCEEEEEEECSSSEE-EEEECSHHHHHHHHTTCCTTSEEEEE-----TTTTEEE
T ss_pred EEEEEEEEEEEEEeecCCCCcceEEEEEEEecCCcE-EEeCCHHHHHHHHHcCceeCCEEEEE-----ccCCEEE
Confidence 3457788887742 2334444455544 4488888765422 59999999874 3457765
No 96
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=39.06 E-value=60 Score=21.36 Aligned_cols=29 Identities=10% Similarity=0.050 Sum_probs=23.5
Q ss_pred eEEEEEEEEeCCCceEEEEeCCCCEEEEE
Q 032460 69 WVHEGFITESLPNGMFRVRLDNEDLILGY 97 (140)
Q Consensus 69 ie~~GvVik~l~n~~f~V~l~dG~~~lcr 97 (140)
---.|+|+++.+++.|.|...||.+-..+
T Consensus 21 ~yYpA~I~si~~~~~Y~V~F~dG~~etvk 49 (67)
T 3p8d_A 21 RFYPAKVTAVNKDGTYTVKFYDGVVQTVK 49 (67)
T ss_dssp CEEEEEEEEECTTSEEEEEETTSCEEEEE
T ss_pred CEeeEEEEEECCCCeEEEEEeCCceEEEe
Confidence 34679999999889999999887776554
No 97
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=38.74 E-value=51 Score=22.84 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=23.2
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEE
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGY 97 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcr 97 (140)
--.|+|+.+.+++.|.|...||.+-..+
T Consensus 37 yYPAkI~sV~~~~~YtV~F~DG~~etvk 64 (85)
T 3qii_A 37 FYPAKVTAVNKDGTYTVKFYDGVVQTVK 64 (85)
T ss_dssp EEEEEEEEECTTSEEEEEETTSCEEEEE
T ss_pred EeeEEEEEECCCCeEEEEEeCCCeEEec
Confidence 4679999999889999999887776554
No 98
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=37.87 E-value=70 Score=24.90 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=35.0
Q ss_pred ccCCcceEEEEEEEEeCCCceEEEEeCCCCEEE---EEeccc-ccc--ccc--ccCCCCEEEEEeccCC
Q 032460 63 GANSEKWVHEGFITESLPNGMFRVRLDNEDLIL---GYISGK-IRQ--NFI--RVLPGDRVRVEVSRYD 123 (140)
Q Consensus 63 ~~k~d~ie~~GvVik~l~n~~f~V~l~dG~~~l---crI~GK-mRk--~~I--rI~vGDrV~VE~sp~D 123 (140)
.|+...+ +.|+|+++. +..+.|.+..+..=. .-++++ .+. ..+ .+.+||.|.+.+...+
T Consensus 63 ~p~~GDi-V~G~V~~v~-~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~ 129 (235)
T 2z0s_A 63 VPQAGDV-VIGLIQSVG-IMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFD 129 (235)
T ss_dssp CCCTTCC-EEEEEEEEC-SSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEEC
T ss_pred CCCCCCE-EEEEEEEEe-CCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEEC
Confidence 4555544 889999995 667788875433222 222331 100 011 4899999998865444
No 99
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=37.72 E-value=33 Score=23.01 Aligned_cols=39 Identities=21% Similarity=0.085 Sum_probs=24.2
Q ss_pred EEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 73 GFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 73 GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
|+|+++ .++.-.|.. +|..+...+.= .. -+.+||+|+|-
T Consensus 7 ~kVvei-~~~~A~vd~-~Gv~r~V~l~L---v~--~~~vGD~VLVH 45 (75)
T 2z1c_A 7 GKVIEV-NGPVAVVDF-GGVKREVRLDL---MP--DTKPGDWVIVH 45 (75)
T ss_dssp EEEEEE-ETTEEEEEE-TTEEEEEECTT---ST--TCCTTCEEEEE
T ss_pred EEEEEE-CCCEEEEEc-CCEEEEEEEEE---eC--CCCCCCEEEEe
Confidence 778887 455555543 66666665541 11 16789999984
No 100
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=35.79 E-value=76 Score=23.44 Aligned_cols=47 Identities=11% Similarity=-0.077 Sum_probs=35.2
Q ss_pred cceEEEEEEEEeC-CCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 67 EKWVHEGFITESL-PNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 67 d~ie~~GvVik~l-~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
..+.+-|+|++.- .++.+.+++.||..+.|.+..-+ .-..+-+|+|.
T Consensus 44 k~VriVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~~pL-----~~~~~~~VEVi 91 (142)
T 2pi2_E 44 KPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPL-----DEEISGIVEVV 91 (142)
T ss_dssp CEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSCC-----SSCCCSEEEEE
T ss_pred CEEEEEEEEeEEcCCCCEEEEEeCCCcEEEEEeCCCC-----CccCCCEEEEE
Confidence 4577899999983 38899999999999999986422 22346677665
No 101
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str}
Probab=35.26 E-value=93 Score=21.36 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=31.3
Q ss_pred ceEEEEEEEEeCC-CceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 68 KWVHEGFITESLP-NGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 68 ~ie~~GvVik~l~-n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
.+=..|+|++-+. ++.-+|+. +|..-.|+- + -.|.+|+.|.|.
T Consensus 40 lIG~~g~V~~~i~~~g~G~V~i-~Ge~W~A~s-~------~~i~~G~~V~Vv 83 (101)
T 2k5h_A 40 LIGRKGVVMEAISPQNSGLVKV-DGETWRATS-G------TVLDVGEEVSVK 83 (101)
T ss_dssp GTTSEEEEEECBCSSSCEEEEE-TTEEEEEEC-S------SCBCTTCEEEEE
T ss_pred cCCCEEEEeEEccCCCeEEEEE-CCEEEEEEe-C------CcCCCCCEEEEE
Confidence 3446799999876 55677876 678888865 2 248889999886
No 102
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=33.11 E-value=47 Score=23.87 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=22.0
Q ss_pred ccccccCCCCEEEEEeccCCC-CeEEEEEEecCC
Q 032460 104 QNFIRVLPGDRVRVEVSRYDT-SKGRIIYRLRNK 136 (140)
Q Consensus 104 k~~IrI~vGDrV~VE~sp~D~-~kGrIiyRy~r~ 136 (140)
.+.+.|..||.|.| ++--|. .+|.|+.-++.+
T Consensus 11 ~rkm~IkkGD~V~V-i~GkdKGk~GkV~~V~~~~ 43 (115)
T 2zjr_R 11 NDKLHFKKGDTVIV-LSGKHKGQTGKVLLALPRD 43 (115)
T ss_dssp TSCCSSCTTSEEEC-CSSSSTTCEEEEEEEETTT
T ss_pred ceeCcccCCCEEEE-eEcCCCCcEEEEEEEECCC
Confidence 34567999999987 454343 468888877543
No 103
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=33.04 E-value=60 Score=24.89 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=25.0
Q ss_pred CCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 80 PNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 80 ~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
+...|.|+.+|+..-.-.+ .-+|+ .-+++||.|+|.
T Consensus 38 ~~~~y~VrFdDs~~~~V~~-~~vk~--LeLRiGD~VKVd 73 (153)
T 2fhd_A 38 SSIMYKVQFDDATMSTVNS-NQIKR--FFLKKGDVVQST 73 (153)
T ss_dssp CBCEEEEEETTSCEEEEET-TSEEE--SCCCTTCEEEET
T ss_pred CCeEEEEEEcCCCCCccCh-hhcee--eeeecCCEEEEC
Confidence 5689999999986653332 23332 448889999995
No 104
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=33.04 E-value=53 Score=25.05 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=30.5
Q ss_pred EEEEEEEEeCCCceEEEEeC--CCCEEEEEec--------------ccc------cccccccCCCCEEEEEec
Q 032460 70 VHEGFITESLPNGMFRVRLD--NEDLILGYIS--------------GKI------RQNFIRVLPGDRVRVEVS 120 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~--dG~~~lcrI~--------------GKm------Rk~~IrI~vGDrV~VE~s 120 (140)
.++|+|..+-..|.| |++. +|-.+...+. |+. +..+..+..||.|.|.+.
T Consensus 84 v~~G~Vs~vt~~Gif-V~lg~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 155 (203)
T 3ayh_B 84 VMLGKIKSCSEEGIR-VTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIE 155 (203)
T ss_dssp EEEEEEEEEETTEEE-EECSSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEE
T ss_pred EEEEEEEEEeccEEE-EEEeCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEE
Confidence 489999999655554 7772 3333333221 111 333455889999998865
No 105
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.69 E-value=32 Score=25.11 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=26.1
Q ss_pred EEEeccccccc----ccccCCCCEEEEEeccCCC-CeEEEEEEecCC
Q 032460 95 LGYISGKIRQN----FIRVLPGDRVRVEVSRYDT-SKGRIIYRLRNK 136 (140)
Q Consensus 95 lcrI~GKmRk~----~IrI~vGDrV~VE~sp~D~-~kGrIiyRy~r~ 136 (140)
.|.++--+|.. .+.|..||.|.| +.-.|. ..|.|+.-+...
T Consensus 28 sa~LSkeLR~ky~~r~~~IkkGD~V~V-i~GkdKGk~GkV~~V~~k~ 73 (121)
T 3j21_U 28 SAPLSRELREKYKVRNLPVRVGDKVRI-MRGDYKGHEGKVVEVDLKR 73 (121)
T ss_dssp EEEBCHHHHHHTCCSEEECCSSSEEEE-CSSSCSSEEEEEEEEETTT
T ss_pred cCcCCHHHHHHhCCcccccccCCEEEE-eecCCCCcEeEEEEEEecC
Confidence 34555444433 367999999988 454444 468888777543
No 106
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=32.66 E-value=44 Score=24.70 Aligned_cols=32 Identities=19% Similarity=-0.029 Sum_probs=17.1
Q ss_pred ccccccCCCCEEEEEecc--CCCCeEEEEEEecC
Q 032460 104 QNFIRVLPGDRVRVEVSR--YDTSKGRIIYRLRN 135 (140)
Q Consensus 104 k~~IrI~vGDrV~VE~sp--~D~~kGrIiyRy~r 135 (140)
.++..+.+||.|.|.... ..+--|+|...+..
T Consensus 22 ~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~ 55 (174)
T 1w4s_A 22 FKNSMYHVGDYVYVEPAEANLQPHIVCIERLWED 55 (174)
T ss_dssp ----CCCTTCEEEECCSSTTSCCEEEEEEEEEEC
T ss_pred ECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEc
Confidence 445567888888886432 11235777766653
No 107
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=32.56 E-value=38 Score=25.52 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=19.8
Q ss_pred ccccCCCCEEEEEeccCCC-Ce-EEEEEEecCC
Q 032460 106 FIRVLPGDRVRVEVSRYDT-SK-GRIIYRLRNK 136 (140)
Q Consensus 106 ~IrI~vGDrV~VE~sp~D~-~k-GrIiyRy~r~ 136 (140)
.+.|..||.|.| +.--|. .. |.|+.-++..
T Consensus 46 ~~~IkkGD~V~V-i~GkdKGk~~GkV~~V~~k~ 77 (145)
T 2zkr_t 46 SMPIRKDDEVQV-VRGHYKGQQIGKVVQVYRKK 77 (145)
T ss_dssp CCBCCTTCEEEE-CSSTTTTCCSEEEEEEETTT
T ss_pred ccccCCCCEEEE-eecCCCCcceeEEEEEECCC
Confidence 356888999987 343333 45 8888776543
No 108
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=32.17 E-value=1.5e+02 Score=21.64 Aligned_cols=52 Identities=29% Similarity=0.222 Sum_probs=34.5
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEeccccc---------------ccccccCCCCEEEEEeccCC
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIR---------------QNFIRVLPGDRVRVEVSRYD 123 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmR---------------k~~IrI~vGDrV~VE~sp~D 123 (140)
.++|+|+.+-..|.| |++ +...-+.+++--.- +.+..+.+||.|.|.+..-|
T Consensus 84 v~~G~V~~v~~~G~f-v~l-~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~ 150 (180)
T 4ayb_E 84 VVEGEVLQVDNYGVF-VNL-GPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVA 150 (180)
T ss_dssp EEEEEEEEEETTEEE-EEC-SSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEEC
T ss_pred EEEEEEeeeccceEE-EEE-CCccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEe
Confidence 489999999766665 666 34566666654332 22234899999999876444
No 109
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=31.96 E-value=34 Score=24.97 Aligned_cols=30 Identities=30% Similarity=0.272 Sum_probs=21.2
Q ss_pred ccccCCCCEEEEEeccCCC-CeEEEEEEecCC
Q 032460 106 FIRVLPGDRVRVEVSRYDT-SKGRIIYRLRNK 136 (140)
Q Consensus 106 ~IrI~vGDrV~VE~sp~D~-~kGrIiyRy~r~ 136 (140)
.+.|..||.|.|- +--|. .+|.|+.-++.+
T Consensus 40 ~~~IkkGD~V~Vi-~G~dKGk~GkV~~V~~k~ 70 (120)
T 1vq8_T 40 NVRVNAGDTVEVL-RGDFAGEEGEVINVDLDK 70 (120)
T ss_dssp EEECCTTCEEEEC-SSTTTTCEEEEEEEETTT
T ss_pred cccccCCCEEEEE-ecCCCCCEEEEEEEECCC
Confidence 4669999999884 43343 579998877543
No 110
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis}
Probab=31.16 E-value=40 Score=24.14 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=22.9
Q ss_pred CceEEEEeCCCCEEEEEecccccccc-----cccCCCCEEEE
Q 032460 81 NGMFRVRLDNEDLILGYISGKIRQNF-----IRVLPGDRVRV 117 (140)
Q Consensus 81 n~~f~V~l~dG~~~lcrI~GKmRk~~-----IrI~vGDrV~V 117 (140)
...|+|++++|.++.|.--=++.-.. -.+.+||+|.+
T Consensus 54 ~~~~~i~t~~G~~i~~T~~H~~~t~~gw~~a~~L~~Gd~v~~ 95 (168)
T 2imz_A 54 RDVIGLRIAGGAILWATPDHKVLTEYGWRAAGELRKGDRVAQ 95 (168)
T ss_dssp EEEEEEEETTSCEEEECTTCEEEETTEEEEGGGCCTTCEEEC
T ss_pred ceEEEEEeCCCCEEEEcCCCCEEEccCCEEHHHCCCCCEEEE
Confidence 45677777777777665433333221 23899999975
No 111
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=30.91 E-value=37 Score=22.70 Aligned_cols=62 Identities=10% Similarity=-0.050 Sum_probs=36.7
Q ss_pred eEEEEEEEEeCCCceEEEEeCC-------CCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEe
Q 032460 69 WVHEGFITESLPNGMFRVRLDN-------EDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRL 133 (140)
Q Consensus 69 ie~~GvVik~l~n~~f~V~l~d-------G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy 133 (140)
....|+|.++-+++ +++.-.. .-+-.-.+.-..-.. .+.+||.|.|++...+.....|+-..
T Consensus 4 ~~~~G~V~~vd~~~-iTi~H~pI~~l~wPaMTM~F~v~~~~~l~--~lk~Gd~V~F~~~~~~~g~~~it~i~ 72 (82)
T 2l55_A 4 HRAVGRIQSIGERS-LIIAHEAIPSAQWGAMTMEFAAPPAGLPQ--GLKAGDRVAFSFRLDPHGMATLVTVA 72 (82)
T ss_dssp EEEEEEEEECCSSE-EEEEECCCTTTTCCCEEEEEECCTTCCCS--SCSTTCEEEEEEEEETTTEEEEEEEE
T ss_pred EEEeEEEEEEcccc-EEEecCCccccCCCceEEEEEcCChhHhh--cCCCCCEEEEEEEECCCCeEEEEEEE
Confidence 45789999986554 5665432 233333444332222 38999999999986553345555443
No 112
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=30.90 E-value=53 Score=23.33 Aligned_cols=38 Identities=3% Similarity=-0.014 Sum_probs=21.6
Q ss_pred CceEEEEeCCCCEEEEEeccccccc-----ccccCCCCEEEEE
Q 032460 81 NGMFRVRLDNEDLILGYISGKIRQN-----FIRVLPGDRVRVE 118 (140)
Q Consensus 81 n~~f~V~l~dG~~~lcrI~GKmRk~-----~IrI~vGDrV~VE 118 (140)
...|+|++++|.++.|.--=.+.-. --.+.+||+|.+.
T Consensus 56 ~~~~~i~t~~G~~i~~T~~H~~~t~~gw~~a~~L~~GD~v~~~ 98 (158)
T 1mi8_A 56 KLVYILKTRLGRTIKATANHRFLTIDGWKRLDELSLKEHIALP 98 (158)
T ss_dssp EEEEEEEETTCCEEEECTTCEEEETTEEEEGGGCCTTCEEEEE
T ss_pred ceEEEEEECCCCEEEEeCCceEEeccCCEEhhhCCCCCEEEec
Confidence 3456666666666665432222211 1238999999874
No 113
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=30.78 E-value=1.2e+02 Score=24.56 Aligned_cols=61 Identities=21% Similarity=0.120 Sum_probs=39.8
Q ss_pred EEEEEEEEeC-CCceEEEEeCC-CCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEe
Q 032460 70 VHEGFITESL-PNGMFRVRLDN-EDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRL 133 (140)
Q Consensus 70 e~~GvVik~l-~n~~f~V~l~d-G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy 133 (140)
.+.|+|+++- ..|- .|.... |+..+++++=--..+..|+.+||.|.|.+. .|. ++||.--.
T Consensus 72 ~~~g~V~~v~~~~Ga-FVdiG~~~~d~lvp~sel~~~~~~~~~~Gd~v~v~l~-iD~-~~Ri~ls~ 134 (285)
T 3go5_A 72 FGWGRVTEVRKDLGV-FVDTGLPDKEIVVSLDILPELKELWPKKGDQLYIRLE-VDK-KDRIWGLL 134 (285)
T ss_dssp CEEEEEEEEETTTEE-EEECSCTTCCEEEEGGGSCSSGGGSCCTTCEEEEEEE-ECT-TSCEEEEE
T ss_pred EEEEEEEEEccCceE-EEEECCCCcEEEEEHHHCCcccccccCCCCEEEEEEE-ECC-CCcEEEEe
Confidence 3889999985 2344 355543 567788877421222357899999988764 455 67887543
No 114
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=30.64 E-value=55 Score=22.76 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=21.4
Q ss_pred CceEEEEeCCCCEEEEEeccccccc-----ccccCCCCEEEEE
Q 032460 81 NGMFRVRLDNEDLILGYISGKIRQN-----FIRVLPGDRVRVE 118 (140)
Q Consensus 81 n~~f~V~l~dG~~~lcrI~GKmRk~-----~IrI~vGDrV~VE 118 (140)
...|++++++|.++.|.--=.+... --.+.+||+|.+.
T Consensus 54 ~~~~~i~t~~G~~i~~T~~H~~~t~~gw~~a~~L~~Gd~v~~~ 96 (139)
T 2in0_A 54 RDVIGLRIAGGAILWATPDHKVLTEYGWRAAGELRKGDRVAVR 96 (139)
T ss_dssp EEEEEEEETTSCEEEECTTCEEEETTEEEEGGGCCTTCEEEEE
T ss_pred cEEEEEEeCCCCEEEecCCCeEEecCCcEEHHHCCCCCEEEeC
Confidence 3456666666666555433222211 2238999999764
No 115
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=30.57 E-value=44 Score=22.13 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=35.9
Q ss_pred ceEEEEEEEEeCC-CceEEEEeCC-------CCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEE
Q 032460 68 KWVHEGFITESLP-NGMFRVRLDN-------EDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIY 131 (140)
Q Consensus 68 ~ie~~GvVik~l~-n~~f~V~l~d-------G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiy 131 (140)
.....|+|.++-+ ++...+.-.. .-+-.-.++...-.. .+.+||.|.|++...+ +...|+.
T Consensus 7 ~~~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~--~lk~Gd~V~F~~~~~~-~~~~it~ 75 (80)
T 2qcp_X 7 VISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMS--EIKTGDKVAFNFVQQG-NLSLLQD 75 (80)
T ss_dssp CEEEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEEC--CCCTTCEEEEEEEEET-TEEEEEE
T ss_pred eEEEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhh--cCCCCCEEEEEEEEeC-CEEEEEE
Confidence 4578999999854 3456665432 233333444333222 3899999999987544 3344443
No 116
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=30.25 E-value=66 Score=19.50 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=21.7
Q ss_pred cccCCCCEEEEEeccCCCCeEEEEEEecC
Q 032460 107 IRVLPGDRVRVEVSRYDTSKGRIIYRLRN 135 (140)
Q Consensus 107 IrI~vGDrV~VE~sp~D~~kGrIiyRy~r 135 (140)
+.+.+||.|.|.-=|+..-.|.|+.-...
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPE 31 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETT
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCC
Confidence 44678999998766777778888876543
No 117
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=30.21 E-value=11 Score=36.29 Aligned_cols=61 Identities=11% Similarity=-0.076 Sum_probs=0.0
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEE---ecccc--cccccccCCCCEEEEEeccCCCCeEEEEE
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGY---ISGKI--RQNFIRVLPGDRVRVEVSRYDTSKGRIIY 131 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcr---I~GKm--Rk~~IrI~vGDrV~VE~sp~D~~kGrIiy 131 (140)
.+.|+|+.+...|. .|.+++|..=++| ++.+. ..-.-.+.+||.|.|.+..-|..+++|-.
T Consensus 908 iv~G~V~~V~~fGa-FV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~L 973 (1030)
T 3psf_A 908 IIPVRVERFWHNDI-ICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEV 973 (1030)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEEEEEEccCeE-EEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEE
Confidence 48899999865444 4666555444444 44443 11122388999999998877777787754
No 118
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=29.80 E-value=1.1e+02 Score=21.83 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=34.1
Q ss_pred eEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccc-----------ccc--ccCCCCEEEEEec
Q 032460 69 WVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQ-----------NFI--RVLPGDRVRVEVS 120 (140)
Q Consensus 69 ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk-----------~~I--rI~vGDrV~VE~s 120 (140)
-...|+|+++.-++.+.|.. +|+...-|+.|-=-- ... .+..|..|.|+++
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~-~g~~~~VRL~gIDaPE~~q~~g~~A~~~l~~ll~~g~~V~~~~d 71 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMY-KGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKDEVEFD 71 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEE-TTEEEEEEETTEECCCTTSTTHHHHHHHHHHHHHHCSCEEEECC
T ss_pred ceeeEEEEEEECCCEEEEEe-CCcEEEEEEEeecCCCcCCchHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34679999999999999986 676666666653211 011 1333889999874
No 119
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=29.65 E-value=1.7e+02 Score=21.49 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=25.2
Q ss_pred CCceEEEEeCCCCEEEEE--------eccccccc-ccccCCCCEEEE
Q 032460 80 PNGMFRVRLDNEDLILGY--------ISGKIRQN-FIRVLPGDRVRV 117 (140)
Q Consensus 80 ~n~~f~V~l~dG~~~lcr--------I~GKmRk~-~IrI~vGDrV~V 117 (140)
....|+|++++|..+.+. -.|+++-. --.+.+||+|.+
T Consensus 73 ~~~~~~I~t~~G~~I~~T~~H~~~v~~~g~~~~~~A~eLk~GD~v~v 119 (185)
T 2lcj_A 73 TDHLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLV 119 (185)
T ss_dssp CSCEEEEEETTSCEEEECSSSEEEEEETTEEEEEEGGGCCTTCEEEE
T ss_pred CceEEEEEECCCCEEEECCCCEEEEecCCeEEEEEHHHCCCCCEEEE
Confidence 355888888888777665 33544322 224999999976
No 120
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=29.63 E-value=43 Score=22.63 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=37.1
Q ss_pred cceEEEEEEEEeCC-CceEEEEeCC-------CCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEE
Q 032460 67 EKWVHEGFITESLP-NGMFRVRLDN-------EDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIY 131 (140)
Q Consensus 67 d~ie~~GvVik~l~-n~~f~V~l~d-------G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiy 131 (140)
......|+|.++-+ ++.+++.-.. .-+-.-.++...... .+.+||.|.|++...+ +...|+-
T Consensus 14 ~~~~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~--~lk~Gd~V~F~~~~~~-~~~~it~ 83 (88)
T 2vb2_X 14 QVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMS--EIKTGDKVAFNFVQQG-NLSLLQD 83 (88)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEEC--CCCTTCEEEEEEEEET-TEEEEEE
T ss_pred ceeEEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhh--cCCCCCEEEEEEEEeC-CEEEEEE
Confidence 34679999999854 3456665432 233333444333332 3899999999987544 3344443
No 121
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=28.53 E-value=1.3e+02 Score=20.01 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=11.0
Q ss_pred cCCCCEEEEEec
Q 032460 109 VLPGDRVRVEVS 120 (140)
Q Consensus 109 I~vGDrV~VE~s 120 (140)
+.+||.+.+++.
T Consensus 78 L~~GD~lvF~~~ 89 (104)
T 1yel_A 78 LEDGKYLQFIYD 89 (104)
T ss_dssp CCTTCEEEEEEC
T ss_pred CCCCCEEEEEEc
Confidence 999999999976
No 122
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=28.52 E-value=1.3e+02 Score=19.80 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=22.3
Q ss_pred CEEEEEecccccccccccCCCCEEEEEec
Q 032460 92 DLILGYISGKIRQNFIRVLPGDRVRVEVS 120 (140)
Q Consensus 92 ~~~lcrI~GKmRk~~IrI~vGDrV~VE~s 120 (140)
+.+-|++-|++.--.-.+..||.|.+--+
T Consensus 40 ~~v~AkVNG~~v~L~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 40 RMIGAKVDGRIVPIDYKVKTGEIIDVLTT 68 (78)
T ss_dssp TEEEEEETTEEECTTCBCCTTCBEEEEEC
T ss_pred ceEEEEECCEEcCCCcccCCCCEEEEEcc
Confidence 56678899988776667999999977433
No 123
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=28.50 E-value=1.1e+02 Score=20.99 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=29.4
Q ss_pred EEEEEEEEeCCCceEEEEeCC-------------CCEEEEEecccccccccccCCCCEEEEEec-cCCCCe
Q 032460 70 VHEGFITESLPNGMFRVRLDN-------------EDLILGYISGKIRQNFIRVLPGDRVRVEVS-RYDTSK 126 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~d-------------G~~~lcrI~GKmRk~~IrI~vGDrV~VE~s-p~D~~k 126 (140)
.+.|+|+..--+....|..+. -+.+.||-+.. ...+||.|.+.-+ |...++
T Consensus 4 ~l~G~VvS~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHDe~n------~~k~GD~V~I~E~RPlSKtK 68 (89)
T 1qd7_I 4 VYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHN------EAKVGDIVKIMETRPLSATK 68 (89)
T ss_pred EEEEEEEecCCCceEEEEEEEEEEcCccceEEeccEEEEEeCCcc------CCCCCCEEEEEEcccCCCCE
Confidence 467888876545656665432 12334443321 2788999998754 444443
No 124
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=28.20 E-value=51 Score=22.00 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=18.3
Q ss_pred cCCCCEEEEEeccCCCCeEEEEEE
Q 032460 109 VLPGDRVRVEVSRYDTSKGRIIYR 132 (140)
Q Consensus 109 I~vGDrV~VE~sp~D~~kGrIiyR 132 (140)
..+||.|+|.-=.|..+.|.|+--
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v 41 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRV 41 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEE
T ss_pred ccCCCeEEEeccEEcCceEEEEEE
Confidence 788999998655666678888754
No 125
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=28.16 E-value=88 Score=27.18 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=26.9
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecc
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISG 100 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~G 100 (140)
.+.|+|++++.|+.+.|...+|+++.-|+.|
T Consensus 24 ~~~~~V~~V~DGDTi~v~~~~g~~~~VRL~g 54 (570)
T 3bdl_A 24 QFVAKVMQVLNADAIVVKLNSGDYKTIHLSS 54 (570)
T ss_dssp EEEEEEEEEETTTEEEEECTTSCEEEEEETT
T ss_pred EEEEEEEEEccCCEEEEECCCCCEEEEEEEE
Confidence 4779999999999999987889888877777
No 126
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=28.13 E-value=47 Score=22.60 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=38.1
Q ss_pred EEEEEEEEeCCCceEEEEeCC-CCEEEEEecccccccccccCCCCEEEEEeccC
Q 032460 70 VHEGFITESLPNGMFRVRLDN-EDLILGYISGKIRQNFIRVLPGDRVRVEVSRY 122 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~d-G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~ 122 (140)
...|+|...- .|+=.+.++| |..+-.|++.-.. . -.+.+||+|.+++..-
T Consensus 8 r~~G~Vk~f~-KGfGFI~~~~gg~DvFvH~s~i~~-~-~~L~~G~~V~F~v~~g 58 (89)
T 1x65_A 8 REMGVIAAMR-DGFGFIKCVDRDVRMFFHFSEILD-G-NQLHIADEVEFTVVPD 58 (89)
T ss_dssp CEEEEEEECC-TTBCEEEESSSSSCCCCBTTGGGG-S-CCCCTTCCEEECCBCC
T ss_pred ceeEEEEEEe-CCcceeecCCCCccEEEEhhhccC-C-CCCCCCCEEEEEEEeC
Confidence 4679999974 7777788877 4788888887654 2 4699999999987643
No 127
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=27.72 E-value=1.9e+02 Score=21.44 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=21.7
Q ss_pred EEEEEEEeCCCc-eEEEEeCCCCEEEEEecc
Q 032460 71 HEGFITESLPNG-MFRVRLDNEDLILGYISG 100 (140)
Q Consensus 71 ~~GvVik~l~n~-~f~V~l~dG~~~lcrI~G 100 (140)
+.|+|+.+.+.. -|-++.++|.+++-|| |
T Consensus 51 ~~G~V~~v~~t~HAigi~~~~G~evLiHi-G 80 (154)
T 2gpr_A 51 VSGKLVTAFPTKHAFGIQTKSGVEILLHI-G 80 (154)
T ss_dssp SCEEEEECCTTCSEEEEECTTSCEEEEEC-S
T ss_pred CCeEEEEEccCCeEEEEEcCCCCEEEEEE-C
Confidence 458999887644 4555568999999998 6
No 128
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=27.48 E-value=68 Score=22.93 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=20.4
Q ss_pred ccccCCCCEEEEEeccCCC-CeEEEEEEecC
Q 032460 106 FIRVLPGDRVRVEVSRYDT-SKGRIIYRLRN 135 (140)
Q Consensus 106 ~IrI~vGDrV~VE~sp~D~-~kGrIiyRy~r 135 (140)
.+.|..||.|.| ++--|. ..|.|+.-++.
T Consensus 4 k~~IkkGD~V~V-i~GkdKGk~GkV~~V~~~ 33 (110)
T 3v2d_Y 4 KMHVKKGDTVLV-ASGKYKGRVGKVKEVLPK 33 (110)
T ss_dssp CCSCCTTSEEEE-CSSTTTTCEEEEEEEEGG
T ss_pred ccccCCCCEEEE-eEcCCCCeEeEEEEEECC
Confidence 456889999987 454444 46888877654
No 129
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=27.42 E-value=60 Score=22.83 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=24.2
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCC
Q 032460 71 HEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYD 123 (140)
Q Consensus 71 ~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D 123 (140)
..|.|+.+ |.|.. .+||+.+ -.-+.+||+|++. .|.
T Consensus 41 ~~G~VvAV-G~G~~---~~~G~~~-----------p~~VkvGD~Vlf~--ky~ 76 (100)
T 1we3_O 41 QKGKVIAV-GTGRV---LENGQRV-----------PLEVKEGDIVVFA--KYG 76 (100)
T ss_dssp SEEEESCC-CCCEE---CTTSCEE-----------CCSCCTTCEEEEC--TTC
T ss_pred cCCEEEEE-CCCcC---CCCCCEE-----------eeecCCCCEEEEC--CCC
Confidence 56999998 56642 4665532 2458899999875 555
No 130
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=27.39 E-value=1.4e+02 Score=20.06 Aligned_cols=51 Identities=16% Similarity=0.069 Sum_probs=34.5
Q ss_pred EEEEEEEEe---CCCceEEEEeCC-CCEEEEEecccccccc--cccCCCCEEEEEeccC
Q 032460 70 VHEGFITES---LPNGMFRVRLDN-EDLILGYISGKIRQNF--IRVLPGDRVRVEVSRY 122 (140)
Q Consensus 70 e~~GvVik~---l~n~~f~V~l~d-G~~~lcrI~GKmRk~~--IrI~vGDrV~VE~sp~ 122 (140)
+++|+|... -+-| .|..+| |..+..|++-=-.... -.+.+||.|..++..-
T Consensus 16 ~~~G~Vk~fn~~kGfG--FI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i 72 (101)
T 2bh8_A 16 KMTGIVKWFNADKGFG--FITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSI 72 (101)
T ss_dssp CEEEEEEEEEGGGTEE--EEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEEC
T ss_pred cceeEEEEEECCCCCE--EEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEe
Confidence 468999975 2234 333444 5889999987554322 3699999999987643
No 131
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=27.00 E-value=25 Score=21.36 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=6.1
Q ss_pred CEEEEEeccccc
Q 032460 92 DLILGYISGKIR 103 (140)
Q Consensus 92 ~~~lcrI~GKmR 103 (140)
..+.+.++|++.
T Consensus 6 ~~v~a~~~G~v~ 17 (74)
T 2d5d_A 6 NVVSAPMPGKVL 17 (74)
T ss_dssp CEEECSSCEEEE
T ss_pred eEEecCCCEEEE
Confidence 344555555553
No 132
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=26.88 E-value=55 Score=22.63 Aligned_cols=45 Identities=13% Similarity=-0.169 Sum_probs=26.7
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEeccc--ccccccccCCCCEEEEE
Q 032460 71 HEGFITESLPNGMFRVRLDNEDLILGYISGK--IRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 71 ~~GvVik~l~n~~f~V~l~dG~~~lcrI~GK--mRk~~IrI~vGDrV~VE 118 (140)
+-|+|+++. ++.-.|. ..|..+...+.=- --. .--+.+||+|+|-
T Consensus 5 IP~kVvei~-~~~A~Vd-~~Gv~r~V~l~Lv~~~~~-~~~~~vGD~VLVH 51 (90)
T 2ot2_A 5 VPGQIRTID-GNQAKVD-VCGIQRDVDLTLVGSCDE-NGQPRVGQWVLVH 51 (90)
T ss_dssp EEEEEEEEC-SSEEEEE-CSSSEEEEECTTTCSBCT-TSCBCTTCEEEEE
T ss_pred cceEEEEEc-CCcEEEE-cCCeEEEEEEeeeeccCC-CCCCCCCCEEEEe
Confidence 458899985 4444443 4677777766511 000 0126789999984
No 133
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=26.37 E-value=1.4e+02 Score=19.45 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=26.4
Q ss_pred EEEeCCCceEEEEeCCCCEEEEEecccccc----cccccCCCCEEEEE
Q 032460 75 ITESLPNGMFRVRLDNEDLILGYISGKIRQ----NFIRVLPGDRVRVE 118 (140)
Q Consensus 75 Vik~l~n~~f~V~l~dG~~~lcrI~GKmRk----~~IrI~vGDrV~VE 118 (140)
.+.+-++..+.-...++.++..-++|++.. ....+.+||.+.+.
T Consensus 45 ~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip 92 (126)
T 4e2g_A 45 WVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEETRVLRPGMAYTIP 92 (126)
T ss_dssp EEEECTTCEEEEECCSSEEEEEEEEECEEEEETTEEEEECTTEEEEEC
T ss_pred EEEECCCCcCCCccCCCceEEEEEEeEEEEEECCEEEEeCCCCEEEEC
Confidence 344445555555555556666777777762 23447888887664
No 134
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=26.36 E-value=1.3e+02 Score=24.32 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=35.7
Q ss_pred EEEEEEEE----eCCCceEEEEeCC-CCEEEEEecccccccccccCCCCEEEEEec
Q 032460 70 VHEGFITE----SLPNGMFRVRLDN-EDLILGYISGKIRQNFIRVLPGDRVRVEVS 120 (140)
Q Consensus 70 e~~GvVik----~l~n~~f~V~l~d-G~~~lcrI~GKmRk~~IrI~vGDrV~VE~s 120 (140)
.++|+|.+ . ..+...|.+.. .....+.++-+=...+-...+||+|.+-+.
T Consensus 10 IVtG~V~r~~~~v-~~~~ViVdlG~~~~k~EgiLP~~Eqip~E~~~~GDrIkayV~ 64 (251)
T 2asb_A 10 IVAGVIQRDSRAN-ARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVV 64 (251)
T ss_dssp EEEEEEECCHHHH-HTTCEEEEECSSSSCEEEEECGGGSCTTCCCCTTCEEEEEEE
T ss_pred EEEEEEEEccccc-cCCeEEEEeCCCCcceEEEEcHHHcCCCccCCCCCEEEEEEE
Confidence 58999999 5 46677887732 124788888665444556899999988654
No 135
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.82 E-value=2.7e+02 Score=23.61 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=39.8
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
...|.|++.+..+.+-|...+|..+...+.+.+-+ -.+.+|+.|.+.
T Consensus 94 ~~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~~~~~--~~~~~~~~v~~~ 140 (428)
T 4b4t_K 94 LVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDR--ELLKPSMSVALH 140 (428)
T ss_dssp EEEEEEEEEEETTEEEEEETTSCEEEECBCSSSCT--TTCCTTCEEEEC
T ss_pred ceeeEEEEEccCCeeEEecCCCCEEEEeccccccH--hhCCCCceeeee
Confidence 35699999998899999999999999999999876 358899999764
No 136
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=25.35 E-value=1.5e+02 Score=22.97 Aligned_cols=50 Identities=14% Similarity=0.296 Sum_probs=28.6
Q ss_pred EEEEEEEEeCCCceEEEEeCC---CCEEEEEe--------------cccc-cccccccCCCCEEEEEec
Q 032460 70 VHEGFITESLPNGMFRVRLDN---EDLILGYI--------------SGKI-RQNFIRVLPGDRVRVEVS 120 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~d---G~~~lcrI--------------~GKm-Rk~~IrI~vGDrV~VE~s 120 (140)
+++|+|..+-..|. .|++++ |-.+...+ -|+. ++.+..+..||.|.|.+.
T Consensus 84 v~~G~Is~Vt~fGi-fVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~ 151 (218)
T 2ckz_B 84 IVTGWISKCTAEGI-KVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIE 151 (218)
T ss_dssp EEEEEEEEEETTEE-EEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEE
T ss_pred EEEEEEEEEccCcE-EEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEE
Confidence 48899999865554 477732 22222222 1211 223445889999999875
No 137
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=25.18 E-value=2.5e+02 Score=22.02 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=36.3
Q ss_pred ceEEEEEEEEeC-CCceEEEEeCCC--CEEEEEecccccc---cccccCCCCEEEEE--eccCCCCeEEEEEE
Q 032460 68 KWVHEGFITESL-PNGMFRVRLDNE--DLILGYISGKIRQ---NFIRVLPGDRVRVE--VSRYDTSKGRIIYR 132 (140)
Q Consensus 68 ~ie~~GvVik~l-~n~~f~V~l~dG--~~~lcrI~GKmRk---~~IrI~vGDrV~VE--~sp~D~~kGrIiyR 132 (140)
.+.+.|+|...- .+.++...++|+ ..+.|++=-.--. ....+.+||+|.|. +..|...+-..+++
T Consensus 73 ~V~ivG~V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g~~qi~i~~ 145 (270)
T 2pi2_A 73 QVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFK 145 (270)
T ss_dssp EEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEEeccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCCeeEEEEEE
Confidence 467889998763 355666666664 3566665321110 12348899999986 23344333333443
No 138
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=24.71 E-value=67 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=21.7
Q ss_pred cccccCCCCEEEEEeccCCC-CeEEEEEEecCC
Q 032460 105 NFIRVLPGDRVRVEVSRYDT-SKGRIIYRLRNK 136 (140)
Q Consensus 105 ~~IrI~vGDrV~VE~sp~D~-~kGrIiyRy~r~ 136 (140)
+.+.|..||.|.| +.-.|. ..|.|+.-+...
T Consensus 45 Rs~~IkKGD~V~V-i~GkdKGk~GkVl~V~~kk 76 (150)
T 3iz5_Y 45 RSIPIRKDDEVQV-VRGSYKGREGKVVQVYRRR 76 (150)
T ss_dssp SEEECCSSSEEEE-CSSTTTTCEEEEEEEETTT
T ss_pred cccccCCCCEEEE-eecCCCCccceEEEEEcCC
Confidence 3467999999987 454443 568888777643
No 139
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=24.40 E-value=57 Score=22.34 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=16.0
Q ss_pred cCCCCEEEEEeccCCCCeEEEEEEec
Q 032460 109 VLPGDRVRVEVSRYDTSKGRIIYRLR 134 (140)
Q Consensus 109 I~vGDrV~VE~sp~D~~kGrIiyRy~ 134 (140)
|.+||+|.|. + +..+|.|-|.=+
T Consensus 6 i~vG~Rv~v~--~-~~~~G~VryvG~ 28 (84)
T 4b6m_A 6 IHVGDRCLCR--P-GDRLGSVRFVGR 28 (84)
T ss_dssp CCTTCEEEET--T-TTEEEEEEEEEE
T ss_pred cccCCEEEEc--C-CCeEEEEEEEec
Confidence 7889999773 2 234688888643
No 140
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=24.39 E-value=1.7e+02 Score=19.85 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=35.6
Q ss_pred CcceEEEEEEEEeCC-CceEEEE--------eCCCCEEEEEeccccccccc-ccCCCCEEEEEecc
Q 032460 66 SEKWVHEGFITESLP-NGMFRVR--------LDNEDLILGYISGKIRQNFI-RVLPGDRVRVEVSR 121 (140)
Q Consensus 66 ~d~ie~~GvVik~l~-n~~f~V~--------l~dG~~~lcrI~GKmRk~~I-rI~vGDrV~VE~sp 121 (140)
++....+|+|-..-. -|+=.|. .++|..+-.|++.--. ... .+.+|++|.+++..
T Consensus 4 p~~~r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~-~g~~~L~eG~~V~f~v~~ 68 (90)
T 3ulj_A 4 PQVLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYM-EGFRSLKEGEPVEFTFKK 68 (90)
T ss_dssp CCCEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCC-SSSCCCCTTCEEEEEEEE
T ss_pred ccccccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcc-cCCCccCCCCEEEEEEEE
Confidence 445567899987532 2332332 2346789999986433 344 39999999998763
No 141
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.27 E-value=20 Score=26.68 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=33.1
Q ss_pred EEEEEEEEeCCCceEEEEeCCCCEEEEEecc--------------cccccccccCCCCEEEEEeccCCCCe
Q 032460 70 VHEGFITESLPNGMFRVRLDNEDLILGYISG--------------KIRQNFIRVLPGDRVRVEVSRYDTSK 126 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~dG~~~lcrI~G--------------KmRk~~IrI~vGDrV~VE~sp~D~~k 126 (140)
.++|+|+.+...|.| |++... ..+.+++- .+++..-.+.+||.|.|.+...|..+
T Consensus 87 v~~G~V~~v~~fG~F-V~l~~~-~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~ 155 (172)
T 3h0g_G 87 VVDAIVTTVNKMGFF-ANIGPL-NVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDA 155 (172)
T ss_dssp EEECCCCEEETTEEE-CCBTTB-CCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESS
T ss_pred EEEEEEEEEEcceEE-EEeCCe-EEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCC
Confidence 488999998755554 666332 24444431 11122335889999999876555444
No 142
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=23.94 E-value=68 Score=24.10 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=9.0
Q ss_pred ccCCCCEEEEE
Q 032460 108 RVLPGDRVRVE 118 (140)
Q Consensus 108 rI~vGDrV~VE 118 (140)
.+.+||+|.+.
T Consensus 97 eLk~GD~v~~~ 107 (199)
T 1am2_A 97 EIKPGDYAVIQ 107 (199)
T ss_dssp GCCTTCEEEEE
T ss_pred HCCCCCEEEEC
Confidence 38999999873
No 143
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=23.76 E-value=1.3e+02 Score=26.21 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=27.1
Q ss_pred eEEEEEEEEeCCCceEEEEe-CCCCEEEEEecc
Q 032460 69 WVHEGFITESLPNGMFRVRL-DNEDLILGYISG 100 (140)
Q Consensus 69 ie~~GvVik~l~n~~f~V~l-~dG~~~lcrI~G 100 (140)
-.+.|+|+.+..|+.|+|.+ .+|..+..|+.|
T Consensus 207 ~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~G 239 (570)
T 3bdl_A 207 GRSEAVVEYVFSGSRLKLYLPKETCLITFLLAG 239 (570)
T ss_dssp CEEEEEEEEESSSSEEEEEETTTTEEEEEEESS
T ss_pred CeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEE
Confidence 35889999999999999997 478778888877
No 144
>1ny4_A 30S ribosomal protein S28E; JR19, structure, autostructure, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Pyrococcus horikoshii} SCOP: b.40.4.5
Probab=23.74 E-value=1.8e+02 Score=20.02 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=26.0
Q ss_pred EEEEEEeCCC-----ce--EEEEeCC----CCEEEEEecccccccccccCCCCEEEEE
Q 032460 72 EGFITESLPN-----GM--FRVRLDN----EDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 72 ~GvVik~l~n-----~~--f~V~l~d----G~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
.+.|++++|- .- .+|++-+ |..+.-.++|=+|. ||.+.+.
T Consensus 8 ~A~VikVlGRTGs~G~~TQVrVe~l~~~~~~R~i~RNVKGPVR~-------GDIL~Ll 58 (82)
T 1ny4_A 8 PAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRV-------GDILILR 58 (82)
T ss_dssp EEEEEEECCCCCSSSSEEEEEEEESSSSSCSCEEEEEEESCCCT-------TCEEECS
T ss_pred eEEEEEEeCcccCcCcEEEEEEEEccCCCCCcEEEeeccCCccc-------CcEEeeh
Confidence 5888888862 22 3555432 57777777776654 9998653
No 145
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.58 E-value=55 Score=20.41 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=16.7
Q ss_pred cccCCCCEEEEEeccCCCCeEEEEE
Q 032460 107 IRVLPGDRVRVEVSRYDTSKGRIIY 131 (140)
Q Consensus 107 IrI~vGDrV~VE~sp~D~~kGrIiy 131 (140)
+.+.+||.|+|.-=|+..-.|.|+.
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~e 30 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILS 30 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEE
Confidence 4577888888765566656676653
No 146
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=23.38 E-value=29 Score=21.07 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=17.6
Q ss_pred EecccccccccccCCCCEEEEEec
Q 032460 97 YISGKIRQNFIRVLPGDRVRVEVS 120 (140)
Q Consensus 97 rI~GKmRk~~IrI~vGDrV~VE~s 120 (140)
.|+-.+|. ...+.+||.|.++..
T Consensus 15 ~IPk~ir~-~lgi~~Gd~v~i~~~ 37 (53)
T 2l66_A 15 TIPAKVRQ-KFQIKEGDLVKVTFD 37 (53)
T ss_dssp CCCHHHHH-HSCCCTTCEEEEEEC
T ss_pred EeCHHHHH-HcCcCCCCEEEEEEE
Confidence 46666665 567999999998865
No 147
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=23.11 E-value=1.7e+02 Score=20.66 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=23.3
Q ss_pred CCceEEEEe-CCCCEEEEEe-----cccccccccc---cCCCCEEEEE
Q 032460 80 PNGMFRVRL-DNEDLILGYI-----SGKIRQNFIR---VLPGDRVRVE 118 (140)
Q Consensus 80 ~n~~f~V~l-~dG~~~lcrI-----~GKmRk~~Ir---I~vGDrV~VE 118 (140)
++-...|-. .||.....++ +|-+-.|+-- ..+||+|.+-
T Consensus 15 ~~E~V~IvNvnNG~RfeTYvI~GerSG~I~lNGAAArl~~~GD~vII~ 62 (97)
T 1uhe_A 15 EGMKVEIVDVNNGERFSTYVILGKKRGEICVNGAAARKVAIGDVVIIL 62 (97)
T ss_dssp TTCEEEEEETTTCCEEEEECEEECSTTCEEEEGGGGGGCCTTCEEEEE
T ss_pred CCCEEEEEECCCCceEEEEEEeeccCCeEEEchHHHccCCCCCEEEEE
Confidence 444444443 5666655553 4555555442 8999999874
No 148
>3j20_X 30S ribosomal protein S28E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.21 E-value=1.8e+02 Score=19.49 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=25.7
Q ss_pred EEEEEEEeCC-----CceE--EEEeC----CCCEEEEEecccccccccccCCCCEEEEE
Q 032460 71 HEGFITESLP-----NGMF--RVRLD----NEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 71 ~~GvVik~l~-----n~~f--~V~l~----dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
..+.|+++++ +... +|++- .|..++..++|=+|. ||.+.+.
T Consensus 7 ~~A~VikVlGRTGs~G~~tQVrve~l~g~d~~R~i~RNVKGPVR~-------GDIl~L~ 58 (71)
T 3j20_X 7 YPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRI-------GDILILR 58 (71)
T ss_dssp EEEEEEEEEEECCSSCCEEEEEEEECSSSSCSCEEEEEEESCCCT-------TCEEEES
T ss_pred ceEEEEEEecCCcCCccEEEEEEEEeecCCCCCEEEeeccCCccc-------CcEEEee
Confidence 4577777764 3333 44432 367777777776654 9999764
No 149
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=21.93 E-value=29 Score=22.45 Aligned_cols=41 Identities=5% Similarity=0.151 Sum_probs=26.5
Q ss_pred CEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEEEec
Q 032460 92 DLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIYRLR 134 (140)
Q Consensus 92 ~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiyRy~ 134 (140)
+.+.|++-|++.--.-.+..||.| |+-.++...|.=+||++
T Consensus 45 ~~vaakvNg~l~dL~~~l~~d~~v--e~vt~~~~eg~~i~rHS 85 (88)
T 1wwt_A 45 NTVIAKVNNVVWDLDRPLEEDCTL--ELLKFEDEEAQAVYSGP 85 (88)
T ss_dssp GCCCEEESSSEECSSSCCCSSEEE--EECSSCCSCCSCSCCCC
T ss_pred ceEEEEECCEEECCCcCcCCCCEE--EEEeCCCHHHhhheecc
Confidence 455667777776544446667765 55566667788777765
No 150
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=21.80 E-value=1.7e+02 Score=22.17 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=33.7
Q ss_pred CCcceEEEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccC
Q 032460 65 NSEKWVHEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRY 122 (140)
Q Consensus 65 k~d~ie~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~ 122 (140)
.+|.-.++ +..+.. +|...+.+++|-.+.--..|.= ..+..||.|.|...-+
T Consensus 81 ~ed~d~I~-~~~eq~-Gg~t~~~~~sGl~~~vl~~G~G----~~~~~gd~V~v~Y~g~ 132 (209)
T 3uf8_A 81 MEDNDIIE-AHREQI-GGSTVVTTESGLKYEDLTEGSG----AEARAGQTVSVHYTGW 132 (209)
T ss_dssp CCTTEEEE-EECSCT-TCCCCEECTTSCEEEEEECCCS----CBCCTTCEEEEEEEEE
T ss_pred hcccccch-hhcccc-ccccccCCCCceEEEEEEcCCC----CcCCCCCEEEEEEEEE
Confidence 33433343 334433 5666666789988888888853 3488999999976543
No 151
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=21.76 E-value=1.4e+02 Score=22.44 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=30.0
Q ss_pred EEEEEEEEeCCCceEEEEeCC-------------CCEEEEEecccccccccccCCCCEEEEEec-cCCCCe
Q 032460 70 VHEGFITESLPNGMFRVRLDN-------------EDLILGYISGKIRQNFIRVLPGDRVRVEVS-RYDTSK 126 (140)
Q Consensus 70 e~~GvVik~l~n~~f~V~l~d-------------G~~~lcrI~GKmRk~~IrI~vGDrV~VE~s-p~D~~k 126 (140)
.+.|+|+..--+....|..+. -+.+.||-+.. -..+||.|.+.-. |...++
T Consensus 62 ~l~G~VVS~KMdKTIvV~Ver~~~hpkY~K~vkr~kKy~AHDe~n------~~kvGD~V~I~E~RPLSKtK 126 (142)
T 3bbn_Q 62 TMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDN------QFKVGDVVRLEKSRPISKTK 126 (142)
T ss_dssp EEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEECTTC------CCCTTEEEEEEECCCSSSSC
T ss_pred EEEEEEEEccCCceEEEEEEEEEEcCccccEEecceEEEEECCCC------CCCCCCEEEEEEccCCCCcE
Confidence 467888886546666665432 12344444421 2788999998754 444333
No 152
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=21.36 E-value=53 Score=25.14 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=34.4
Q ss_pred cceEEEEEEEEeCC-----CceEEEEeCCCCEEEEEecccccccccccCCCCEEEEEeccCCCCeEEEEE
Q 032460 67 EKWVHEGFITESLP-----NGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKGRIIY 131 (140)
Q Consensus 67 d~ie~~GvVik~l~-----n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kGrIiy 131 (140)
..+...|+....-+ ..+|+-. .+.-. .+. .+.|.+||.|.+.+.....+.|.|+-
T Consensus 20 ~~llQ~Gv~~~~~~G~~~y~aWyEw~-P~~a~---~~~------~~~v~~GD~i~~tV~~~s~~~g~~tl 79 (173)
T 1y43_B 20 TAILQTGVDFCYEDGQTSYDAWYEWY-PDYAY---DFS------DITISEGDSIKVTVEATSKSSGSATV 79 (173)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEEEEE-TSCCE---EET------TCCCCTTCEEEEEEEEEETTEEEEEE
T ss_pred CccEEeEEEEEECCCCEEEEEEEEec-CCCcc---ccc------cceeCCCCEEEEEEEEcCCCcEEEEE
Confidence 45666777777641 1233333 23222 222 35699999999999887778888873
No 153
>2xzm_1 Ribosomal protein S28E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_1
Probab=21.05 E-value=1.9e+02 Score=19.24 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=23.8
Q ss_pred EEEEEEeCC-----CceE--EEEeCC----CCEEEEEecccccccccccCCCCEEEEE
Q 032460 72 EGFITESLP-----NGMF--RVRLDN----EDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 72 ~GvVik~l~-----n~~f--~V~l~d----G~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
.+.|+++++ +... +|++-+ |..+...++|=+| +||.+.+.
T Consensus 8 ~A~VikVlGRTGs~G~~tQVrv~~l~~~~~~R~i~RnVkGPVr-------~GDil~L~ 58 (68)
T 2xzm_1 8 KARIMDVLGKTGSRGGITQVRVVLISGKEEGRQLIRNVKGACR-------VGDVLELM 58 (68)
T ss_dssp EEEEEEEEEEECCCCCEEEEEEEECSSSCCSCEEEEEEESCCC-------TTCEEEES
T ss_pred EEEEEEEeccccCCCcEEEEEEEECcCCCCCcEEEeeccCCcc-------cCcEEeeh
Confidence 466666654 3333 444422 5677777777665 49998664
No 154
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=20.88 E-value=1e+02 Score=19.83 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=20.3
Q ss_pred CCEEEEEecccccccccccCCCCEEEEEec
Q 032460 91 EDLILGYISGKIRQNFIRVLPGDRVRVEVS 120 (140)
Q Consensus 91 G~~~lcrI~GKmRk~~IrI~vGDrV~VE~s 120 (140)
|....-+|+-.++. ...+.+||.|.|+..
T Consensus 10 Gns~~v~iPk~~~~-~lgl~~gd~v~i~~~ 38 (82)
T 1mvf_D 10 GNSPAVRIPATLMQ-ALNLNIDDEVKIDLV 38 (82)
T ss_dssp TTEEEEECCHHHHH-HTTCCTTCBEEEEEE
T ss_pred CCccEEEECHHHHH-HcCCCCCCEEEEEEE
Confidence 44556667777765 467888999888754
No 155
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=20.66 E-value=2.7e+02 Score=20.78 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=21.6
Q ss_pred EEEEEEEeCCC-ceEEEEeCCCCEEEEEecc
Q 032460 71 HEGFITESLPN-GMFRVRLDNEDLILGYISG 100 (140)
Q Consensus 71 ~~GvVik~l~n-~~f~V~l~dG~~~lcrI~G 100 (140)
+.|+|+.+.+. ..|-++.++|.+++-|| |
T Consensus 56 ~~G~V~~v~~t~hAigi~t~~G~evLiHi-G 85 (161)
T 1f3z_A 56 VDGTIGKIFETNHAFSIESDSGVELFVHF-G 85 (161)
T ss_dssp SSEEEEEECTTSSEEEEEETTSCEEEEEC-S
T ss_pred CCeEEEEEccCCeEEEEEeCCCCEEEEEE-C
Confidence 34888888753 44556668999999998 6
No 156
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=20.56 E-value=89 Score=24.17 Aligned_cols=12 Identities=25% Similarity=0.399 Sum_probs=7.1
Q ss_pred cCCCCEEEEEec
Q 032460 109 VLPGDRVRVEVS 120 (140)
Q Consensus 109 I~vGDrV~VE~s 120 (140)
...|.+|=||++
T Consensus 63 ~~~G~WvGVELD 74 (172)
T 2cp6_A 63 FAKGEWCGVELD 74 (172)
T ss_dssp SSSSEEEEEEES
T ss_pred CCCCcEEEEEec
Confidence 345666666655
No 157
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=20.54 E-value=1.8e+02 Score=18.60 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=29.5
Q ss_pred EEEEEEEeCCCceEEEEeCCCCEEEEEecccccccccccCCCCEEEEE
Q 032460 71 HEGFITESLPNGMFRVRLDNEDLILGYISGKIRQNFIRVLPGDRVRVE 118 (140)
Q Consensus 71 ~~GvVik~l~n~~f~V~l~dG~~~lcrI~GKmRk~~IrI~vGDrV~VE 118 (140)
..|+|++-+.++.-+|+. +|..-.|+-.. ....|.+|+.|.|.
T Consensus 27 ~~~~v~~~i~~~~G~V~~-~G~~W~A~s~~----~~~~i~~G~~V~Vv 69 (82)
T 3cp0_A 27 HRAEVLEDVGATSGQVRL-DGSIWSARSMD----PTHTFAEGEIVSVI 69 (82)
T ss_dssp CEEEEEECBCSSCCEEEE-TTEEEEEEESS----TTCCBCTTCEEEEE
T ss_pred CEEEEEEEeCCCCEEEEE-CCEEEEEEECC----CCCccCCCCEEEEE
Confidence 568888887555566776 57888887531 11347889999885
No 158
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.40 E-value=1.4e+02 Score=20.40 Aligned_cols=32 Identities=9% Similarity=-0.169 Sum_probs=22.8
Q ss_pred EEeCCCCEEEEEecccccc-cccccCCCCEEEEE
Q 032460 86 VRLDNEDLILGYISGKIRQ-NFIRVLPGDRVRVE 118 (140)
Q Consensus 86 V~l~dG~~~lcrI~GKmRk-~~IrI~vGDrV~VE 118 (140)
+..+.| .+.|.+-+..-. ..-.|.+|+.+.+.
T Consensus 46 L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is 78 (114)
T 1ynx_A 46 FLDTSG-EIRATAFNDFATKFNEILQEGKVYYVS 78 (114)
T ss_dssp EEETTE-EEEEEECHHHHHHHHHHSCSSSEEEEE
T ss_pred EECCCC-eEEEEECHHHHHHHHhhcccCcEEEEC
Confidence 334678 999999987533 22348999999774
No 159
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=20.33 E-value=1.5e+02 Score=25.33 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=35.7
Q ss_pred eEEEEEEEE----eCCCceEEEEeCC-CCEEEEEecccccccccccCCCCEEEEEecc
Q 032460 69 WVHEGFITE----SLPNGMFRVRLDN-EDLILGYISGKIRQNFIRVLPGDRVRVEVSR 121 (140)
Q Consensus 69 ie~~GvVik----~l~n~~f~V~l~d-G~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp 121 (140)
-.++|+|.+ .- .+...|.+.. .....+.++=+=...+-...+||+|.+-+..
T Consensus 132 eIVtG~V~r~~~~v~-~~~v~VdLG~~~~k~EgiLP~~EqiP~E~~~~GDrVkvyV~~ 188 (366)
T 1k0r_A 132 EIVAGVIQRDSRANA-RGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVG 188 (366)
T ss_dssp CEEEEEEECCHHHHH-TTCEEEEECCSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEE
T ss_pred CEEEEEEEEcccccc-CCeEEEEeCCCccceEEEEcHHHcCCCccCCCCCEEEEEEEE
Confidence 359999999 74 5666787732 1246788875544445568999999886553
No 160
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=20.27 E-value=45 Score=25.13 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=23.8
Q ss_pred CEEEEEecccccccccccCCCCEEEEEeccCCCCeE
Q 032460 92 DLILGYISGKIRQNFIRVLPGDRVRVEVSRYDTSKG 127 (140)
Q Consensus 92 ~~~lcrI~GKmRk~~IrI~vGDrV~VE~sp~D~~kG 127 (140)
.+++--.+=|+|+ ...+.-||.|.|++..-..++|
T Consensus 106 ~vlEIIAp~~LR~-~L~LkDGD~V~I~v~~~~~~~~ 140 (146)
T 2oyn_A 106 EIIEIIAPMKLRE-QFNLKDGDVIKILIKGDKDEEG 140 (146)
T ss_dssp EEEEEECSSCHHH-HHTCCTTCEEEEEEECCTTC--
T ss_pred CEEEEEcCcchhh-hcCCCCCCEEEEEEeCCCCccc
Confidence 4455555666765 5779999999999876555554
Done!