BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032461
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human
Pirh2. Northeast Structural Genomics Consortium (Nesg)
Target Ht2c
Length = 79
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%)
Query: 61 SLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNT 120
S DM++ W ++D E+A TPMP+ YQN V ILCNDC S VQFH++ KC C+SYNT
Sbjct: 7 SALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66
Query: 121 RQTRG 125
Q G
Sbjct: 67 AQAGG 71
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKS 61
E NCPIC E I + VL CGH +H C +EM K Y CP+C S
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCMHS 52
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSK 60
CPIC E I + VL CGH +H C +EM K Y CP+CS
Sbjct: 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSG 51
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEM--EKHYRYTCPVCSK 60
CPIC E + +L CGHTI +CL+++ CP CSK
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
pdb|3BTN|B Chain B, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
Length = 448
Score = 30.4 bits (67), Expect = 0.37, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 41 LECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGAN 100
L + E+ K Y+ P+ + SLW S ++DQ + S +P + N W++ ++ GA+
Sbjct: 332 LNTIPEVHKKYKEDEPLFTSSLWGPS--CDELDQIVESCLLPEL--NVGDWLIFDNMGAD 387
Query: 101 SHVQFH 106
S FH
Sbjct: 388 S---FH 390
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 15 NCPIC---FEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSK 71
+CPIC + I + I CGH +CL++ K+ TCP C K +
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPIY 67
Query: 72 IDQEIASTPM-----PAMYQNKMVWILCNDCGANSHVQFHVIAHKCL--SCKSYNT 120
I S P+ + QN + I+ +CG HV +CL S K+ NT
Sbjct: 68 IGSGTVSCPICMDGYSEIVQNGRL-IVSTECG-------HVFCSQCLRDSLKNANT 115
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 15 NCPIC---FEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62
+CPIC + I + I CGH +CL++ K+ TCP C K +
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 66
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 15 NCPIC---FEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62
+CPIC + I + I CGH +CL++ K+ TCP C K +
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 61
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 15 NCPIC---FEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62
+CPIC + I + I CGH +CL++ K+ TCP C K +
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 54
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 58
C +C + D + + RCGH H EC+ +M TCP+C
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECV-DMWLGSHSTCPLC 49
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKE-MEKHYRYTCPVCSKSL 62
CP+C E + + + L C H H C+ +E+H +CPVC KSL
Sbjct: 18 CPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHD--SCPVCRKSL 62
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 28.9 bits (63), Expect = 0.93, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 39 IHLECLKEMEKHYRYTCPV-CSKSLWD-MSKLWSKIDQE 75
++ E L ++E+ YR CP C +SL D M + W K +E
Sbjct: 387 VNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEE 425
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 28.9 bits (63), Expect = 0.96, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 39 IHLECLKEMEKHYRYTCPV-CSKSLWD-MSKLWSKIDQE 75
++ E L ++E+ YR CP C +SL D M + W K +E
Sbjct: 386 VNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE 424
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 28.9 bits (63), Expect = 0.96, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 39 IHLECLKEMEKHYRYTCPV-CSKSLWD-MSKLWSKIDQE 75
++ E L ++E+ YR CP C +SL D M + W K +E
Sbjct: 386 VNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE 424
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 28.9 bits (63), Expect = 0.96, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 39 IHLECLKEMEKHYRYTCPV-CSKSLWD-MSKLWSKIDQE 75
++ E L ++E+ YR CP C +SL D M + W K +E
Sbjct: 386 VNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE 424
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 28.9 bits (63), Expect = 0.96, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 39 IHLECLKEMEKHYRYTCPV-CSKSLWD-MSKLWSKIDQE 75
++ E L ++E+ YR CP C +SL D M + W K +E
Sbjct: 469 VNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE 507
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 24 FDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 58
F++ + + VL C H H +C+ + K R TCP+C
Sbjct: 33 FESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPIC 66
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 10 RAMHHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62
R++H CPIC + + +TM T C H +C+ + CP C K L
Sbjct: 48 RSLHSELMCPICLDMLKNTM---TTKECLHRFCADCIITALRSGNKECPTCRKKL 99
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 10 RAMHHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62
R++H CPIC + + +TM T C H +C+ + CP C K L
Sbjct: 29 RSLHSELMCPICLDMLKNTM---TTKECLHRFCADCIITALRSGNKECPTCRKKL 80
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 10 RAMHHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62
R++H CPIC + + +TM T C H +C+ + CP C K L
Sbjct: 49 RSLHSELMCPICLDMLKNTM---TTKECLHRFCADCIITALRSGNKECPTCRKKL 100
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSL 62
CPIC D ++ + CGH L+C+ ++ + + CP+C S+
Sbjct: 23 CPICL----DILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 93 LCNDCGANSHVQFHVIAHKCLSCKSYNTRQTRGDTATTC 131
+C CG S + H + C CK + R R D TC
Sbjct: 139 ICAICGDRSSGK-HYGVYSCEGCKGFFKRTVRKDLTYTC 176
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVC 58
CPIC D ++ + CGH L+C+ ++ + + CP+C
Sbjct: 23 CPICL----DILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.133 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,354,349
Number of Sequences: 62578
Number of extensions: 154218
Number of successful extensions: 867
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 57
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)