BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032461
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Query: 1 MKDKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSK 60
++ KH+C+E NCPIC E I + VL CGH +H C +EM K Y CP+C
Sbjct: 130 LRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCMH 188
Query: 61 SLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNT 120
S DM++ W ++D E+A TPMP+ YQN V ILCNDC S VQFH++ KC C SYNT
Sbjct: 189 SALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNT 248
Query: 121 RQTRG 125
Q G
Sbjct: 249 AQAGG 253
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 77/125 (61%), Gaps = 1/125 (0%)
Query: 1 MKDKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSK 60
++ +H+C+E NCPIC E I + VL CGH +H C +EM K Y CP+C
Sbjct: 130 LQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCMH 188
Query: 61 SLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNT 120
S DM++ W ++D E+A TPMP+ YQN V ILCNDC S VQFH++ KC C+SYNT
Sbjct: 189 SALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 248
Query: 121 RQTRG 125
Q G
Sbjct: 249 AQAGG 253
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 3 DKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62
+ HRC+ER+ NCPIC E++F++ + + L C H +H C +E + Y CP C K++
Sbjct: 258 NTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIR-TNYRCPTCYKTI 316
Query: 63 WDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNT 120
+++ L+ +D EI PMP Y + I CNDC + ++H + HKC SC SYNT
Sbjct: 317 INVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKE-MEKHYRYTCPVC 58
C IC +F FD +D+ + CGHT HL+CL + E TCP C
Sbjct: 7 CTICSDF-FDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQC 49
>sp|Q8VIG6|TRAIP_MOUSE TRAF-interacting protein OS=Mus musculus GN=Traip PE=1 SV=2
Length = 470
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKE-MEKHYRYTCPVC 58
C IC +F FD +D+ + CGHT HL+CL + E TCP C
Sbjct: 7 CTICSDF-FDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQC 49
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQE 75
CP+C E + + + C HT H +CL + + CPVC S +S+ S + Q
Sbjct: 240 CPVCLERMDSETTGLVTIPCQHTFHCQCLNKWKNS---RCPVCRHSSLRLSR-ESLLKQA 295
Query: 76 IASTPMPAMYQNKMVWI--LCNDCGANSHVQFHVIAH--KCLSCKSYNTRQTR 124
S +WI +C + G + H I H + L C + + R R
Sbjct: 296 GDSAHCATCGSTDNLWICLICGNVGCGRYNSKHAIKHYEETLHCFAMDIRTQR 348
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 4 KHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECL-KEMEKHYRYTCPVCSKSL 62
K + E +H C +C E F ++ + C H H +CL K +E R CP+C+ +
Sbjct: 66 KEKVKELNLHELCAVCLE-DFKPRDELGICPCKHAFHRKCLIKWLE--VRKVCPLCNMPV 122
Query: 63 WDMSKLWSKIDQEIASTPMPA 83
+++L SK D+ P+P
Sbjct: 123 LQLAQLHSKQDRGPPQGPLPG 143
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 4 KHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECL-KEMEKHYRYTCPVCSKSL 62
K + E +H C +C E F ++ + C H H +CL K +E R CP+C+ +
Sbjct: 66 KEKVKELNLHELCAVCLE-DFKPRDELGICPCKHAFHRKCLVKWLE--VRKVCPLCNMPV 122
Query: 63 WDMSKLWSKIDQEIASTPMPA 83
+++L SK D+ P+P
Sbjct: 123 LQLAQLHSKQDRGPPQEPLPG 143
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 14 HNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKS 61
++C IC E IF + K++ VL+CGH H C K+ K + TCP C S
Sbjct: 1929 NSCEICHE-IFKS-KNMRVLKCGHKFHKGCFKQWLKG-QSTCPTCGSS 1973
>sp|Q810I2|TRI50_MOUSE E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus GN=Trim50 PE=2
SV=1
Length = 483
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSL 62
CPIC E K+ +L+CGH+ +CL + +H CPVC +S+
Sbjct: 16 CPICLE----VFKEPLMLQCGHSYCKDCLDNLSQHLDSELCCPVCRQSV 60
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 9 ERAMHHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMS 66
E+ HN C IC++ MK + C H H CLK+ + + TCP+C L + S
Sbjct: 528 EQLEKHNDICAICYQ----DMKSAVITPCSHFFHAGCLKKW-LYVQDTCPLCHCHLKNSS 582
Query: 67 KLWSKIDQEIASTPMPAMYQN 87
+L + E A P QN
Sbjct: 583 QL-PGLGTEAAPQPPAGAEQN 602
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSL 62
CPIC E K+ +L+CGH+ CL + +H CPVC +S+
Sbjct: 16 CPICLE----VFKEPLMLQCGHSYCKNCLDSLSEHLDSELRCPVCRQSV 60
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEM-EKHYRYTCPVCSKSLWD----MSKLWS 70
CP+C E KD ++ CGH C+ ++ E + CP C +S+ D ++++ +
Sbjct: 146 CPLCVEL----FKDPVMVACGHNFCRSCIDKVWEGQSSFACPECKESITDRKYTINRVLA 201
Query: 71 KIDQEIASTPM 81
+ ++ A TP+
Sbjct: 202 NLAKKAACTPV 212
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKID- 73
+CPIC + +T++ L CGHT+ CL ++ +R CP +D + + + I+
Sbjct: 13 SCPICTQTFDETIRKPISLGCGHTVCKMCLNKL---HRKACP------FDQTTINTDIEL 63
Query: 74 -------QEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKC-----LSCKSYNTR 121
++ +P Q LC CGA + A KC L K +T
Sbjct: 64 LPVNSALLQLVGAQVPEQQQ----ITLCGGCGAEDTKHYEE-ARKCVEELALYLKPLSTA 118
Query: 122 QTRGDTATTCS 132
+ G +TT S
Sbjct: 119 RGVGLNSTTQS 129
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 13 HHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWS 70
HN C ICF+ MK + C H H CLK+ + + TCP+C L S+L
Sbjct: 532 QHNDICSICFQ----DMKSAVITPCSHFFHAACLKKW-LYVQETCPLCHGQL--KSQLQP 584
Query: 71 KIDQEIASTPMPAMYQN 87
+ PA QN
Sbjct: 585 TSSPGTPTQGTPAANQN 601
>sp|Q23985|DTX_DROME Protein deltex OS=Drosophila melanogaster GN=dx PE=1 SV=2
Length = 738
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 16 CPICFEFIFDTMKD--ITVLRCGHTIHLECL--------KEMEKHYRYTCPVCS 59
CP+C E + + ++ I++ RC H +HL+CL EM K+ CPVC
Sbjct: 548 CPMCMEELVHSAQNPAISLSRCQHLMHLQCLNGMIIAQQNEMNKNLFIECPVCG 601
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 9 ERAMHHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMS 66
E+ HN C IC++ MK + C H H CLK+ + + TCP+C L + S
Sbjct: 528 EQLEKHNDICAICYQ----DMKSAVITPCSHFFHAGCLKKW-LYVQETCPLCHCHLKNSS 582
Query: 67 KLWSKIDQEIASTPMPAMYQNKM 89
+L + E P QN M
Sbjct: 583 QL-PGLGTEPVLQPHAGAEQNVM 604
>sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1
SV=2
Length = 653
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEM--EKHYRYTCPVCSK 60
CPIC E + +L CGHTI +CL+++ CP CSK
Sbjct: 20 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 66
>sp|Q8CH72|TRI32_MOUSE E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus GN=Trim32 PE=1
SV=2
Length = 655
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEM--EKHYRYTCPVCSK 60
CPIC E + +L CGHTI +CL+++ CP CSK
Sbjct: 21 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 67
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK-HYRYTCPVC----SKSLWDMSKLWS 70
CPIC E ++D + CGH L+C+ ++ K + CP+C +K+ + +KL +
Sbjct: 16 CPICMEI----LQDPVTIDCGHNFCLQCISQVGKTSEKIQCPLCKLSVNKNTFRPNKLLA 71
Query: 71 KIDQEIAS 78
+ ++I S
Sbjct: 72 SLAEKIQS 79
>sp|Q8K243|TRI68_MOUSE E3 ubiquitin-protein ligase TRIM68 OS=Mus musculus GN=Trim68 PE=2
SV=1
Length = 485
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK------HYRYTCPVC 58
NCPIC F +++ + CGHT CL + K + YTCP+C
Sbjct: 15 NCPICMTF----LREPVSISCGHTFCHSCLSGLWKLPGESQNLSYTCPLC 60
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 9 ERAMHHNCPICFEFIFDT-MKDITVLRCGHTIHLECLKE-MEKHYRYTCPVCSKSL 62
++ M CPIC++ + + K T + CGH CL++ +E H TCP+C K +
Sbjct: 100 DQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENH--CTCPLCRKEV 153
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLK---EMEKHYRYTCPVCSKSLW 63
RA C IC E M L C H HL CL+ + + Y+CP C K L+
Sbjct: 331 RAYDDECAICRE----PMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLF 383
>sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis GN=rnf166 PE=2 SV=1
Length = 241
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKL--WSKI 72
CPIC E + K + + CGHT ECL+ + CP+C + +D K+ S +
Sbjct: 36 GCPICLEVYY---KPVAIGSCGHTFCGECLQPCLQVSSPLCPLC-RMPFDPKKVDKASNV 91
Query: 73 DQEIASTPMP 82
D++++S P
Sbjct: 92 DKQLSSYKAP 101
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 58
+C IC E +F + K++ VL+CGH H C K+ K + CP C
Sbjct: 1956 SCEICHE-VFKS-KNVRVLKCGHKYHKGCFKQWLKG-QSACPAC 1996
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCP 56
+CPIC + +T++ L CGHT+ CL ++ +R CP
Sbjct: 13 SCPICTQTFDETIRKPISLGCGHTVCKMCLNKL---HRKACP 51
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCP 56
+CPIC + +T++ L CGHT+ CL ++ +R CP
Sbjct: 13 SCPICTQTFDETIRKPISLGCGHTVCKMCLNKL---HRKACP 51
>sp|Q8TEC5|SH3R2_HUMAN Putative E3 ubiquitin-protein ligase SH3RF2 OS=Homo sapiens
GN=SH3RF2 PE=1 SV=3
Length = 729
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK-HYRYTCPVC 58
CP+CFE + T K VL C HT CL+ + K H CP C
Sbjct: 12 CPVCFEKLDVTAK---VLPCQHTFCKPCLQRVFKAHKELRCPEC 52
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 33 LRCGHTIHLECLKE-MEKHYRYTCPVCSKSLWD 64
L CGH +HL CLK ME+ TCP+C ++D
Sbjct: 375 LPCGHILHLSCLKNWMER--SQTCPICRLPVFD 405
>sp|Q8BZT2|SH3R2_MOUSE Putative E3 ubiquitin-protein ligase SH3RF2 OS=Mus musculus
GN=Sh3rf2 PE=1 SV=2
Length = 735
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK-HYRYTCPVC 58
CP+CFE + T K VL C HT CL+ + K H CP C
Sbjct: 12 CPVCFEKLDVTAK---VLPCQHTFCKPCLQRIFKAHKELRCPEC 52
>sp|Q498M5|SH3R2_RAT Putative E3 ubiquitin-protein ligase SH3RF2 OS=Rattus norvegicus
GN=Sh3rf2 PE=2 SV=1
Length = 735
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK-HYRYTCPVC 58
CP+CFE + T K VL C HT CL+ + K H CP C
Sbjct: 12 CPVCFEKLDVTAK---VLPCQHTFCKPCLQRIFKAHKELRCPEC 52
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSK 60
C IC D M + + CGH+ EC+ E+ K CPVC +
Sbjct: 16 CSICL----DPMVEPMSIECGHSFCQECISEVGKEGGSVCPVCRR 56
>sp|Q865W2|TRI50_PIG E3 ubiquitin-protein ligase TRIM50 OS=Sus scrofa GN=TRIM50 PE=2
SV=1
Length = 486
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSL 62
CP+C E K+ +L+CGH+ CL + +H CPVC + +
Sbjct: 16 CPVCLE----VFKEPLMLQCGHSYCKGCLLSLSRHLDSELRCPVCRQEV 60
>sp|Q6AZZ1|TRI68_HUMAN E3 ubiquitin-protein ligase TRIM68 OS=Homo sapiens GN=TRIM68 PE=1
SV=1
Length = 485
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEM------EKHYRYTCPVC 58
CPIC F+ + M + CGH+ CL + +++ YTCP+C
Sbjct: 16 CPICMTFLREPMS----IDCGHSFCHSCLSGLWEIPGESQNWGYTCPLC 60
>sp|Q9D9X6|ZSWM2_MOUSE E3 ubiquitin-protein ligase Zswim2 OS=Mus musculus GN=Zswim2 PE=1
SV=1
Length = 631
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 16 CPICFEFIFDTMKDITVLR--CGHTIHLECLKEMEKHYRYT--------CPVCSKSLWDM 65
CPIC E + + +T R CG+ +H++C++ + +Y+ T CP+C + +
Sbjct: 147 CPICQEVLLEKKLPVTFCRFGCGNNVHIKCMRIL-ANYQDTGSDSSVLRCPLCREEFAPL 205
Query: 66 SKLWSKIDQEIASTPMPAMYQ-NKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQTR 124
+ + + + +K + I CN+C + + +KC C Y+ Q
Sbjct: 206 KVILEEFKNSNKLITISEKERLDKHLGIPCNNC---NQLPIEGRCYKCTECVEYHLCQEC 262
Query: 125 GDTATTCSSGVA 136
D+ S A
Sbjct: 263 FDSCCHSSHAFA 274
>sp|P09108|RAPSN_TORCA 43 kDa receptor-associated protein of the synapse OS=Torpedo
californica GN=RAPSN PE=1 SV=3
Length = 412
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 5 HRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKS 61
H C+E M C +C E I D + L C H HL+CL + + CP C +S
Sbjct: 353 HECMED-MELYCGLCGESIGDQNSQLQALPCSHLFHLKCL---QTNGNRGCPNCKRS 405
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 58
C +CF F+ + + VL C H H +C+ + K R TCP+C
Sbjct: 380 CVVCFS-DFEARQLLRVLPCNHEFHTKCVDKWLKANR-TCPIC 420
>sp|Q4R5T4|RNF32_MACFA RING finger protein 32 OS=Macaca fascicularis GN=RNF32 PE=2 SV=1
Length = 362
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY-RYTCPVCSKSLWD 64
CPIC E ++ +L C H H CL+ EK + TCP+C K+ +
Sbjct: 127 CPICKEEF--ELRPQVLLSCSHVFHRACLQAFEKFTNKKTCPLCRKNQYQ 174
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLE-CLKEMEKHYRYTCPVCSKSLWDMSKLW 69
C +CF D+ D + CGH C + + R CP+C + + D+ K++
Sbjct: 494 CTVCF----DSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKIY 544
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 20/65 (30%)
Query: 16 CPICFEFIF---------DTMK------DITVLR--CGHTIHLECLKE-MEKHYRYTCPV 57
C IC E +F D M+ D+T R CGH +H CL+ +E+ + TCP+
Sbjct: 292 CTICREEMFHPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLER--QQTCPI 349
Query: 58 CSKSL 62
C +S+
Sbjct: 350 CRRSV 354
>sp|Q495X7|TRI60_HUMAN Tripartite motif-containing protein 60 OS=Homo sapiens GN=TRIM60
PE=2 SV=2
Length = 471
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVC 58
+CPIC E+ +KD + CGH CL K + CPVC
Sbjct: 15 SCPICLEY----LKDPVTINCGHNFCRSCLSVSWKDLDDTFPCPVC 56
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1
SV=1
Length = 555
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 16 CPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWDMSKLW 69
C +CF+ DT+ + CGH + C +++ R CP+C + + D+ K++
Sbjct: 503 CTVCFDGEVDTV----IYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIY 553
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 58
C +CF F++ + + VL C H H +C+ + K R TCP+C
Sbjct: 396 CVVCFS-DFESRQLLRVLPCNHEFHAKCVDKWLKTNR-TCPIC 436
>sp|Q9H0A6|RNF32_HUMAN RING finger protein 32 OS=Homo sapiens GN=RNF32 PE=1 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY-RYTCPVCSKSLW 63
CPIC E ++ +L C H H CL+ EK + TCP+C K+ +
Sbjct: 127 CPICKEEF--ELRPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRKNQY 173
>sp|Q86XT4|TRI50_HUMAN E3 ubiquitin-protein ligase TRIM50 OS=Homo sapiens GN=TRIM50 PE=1
SV=1
Length = 487
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSLWDMSKL 68
CPIC E K+ +L+CGH+ CL + H CPVC +++ S L
Sbjct: 16 CPICLE----VFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAVDGSSSL 66
>sp|Q5SBP5|GCS1_OCIBA Gamma-cadinene synthase OS=Ocimum basilicum GN=CDS PE=1 SV=1
Length = 540
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 1 MKDK-HRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCS 59
+KDK R +ER +H PI + F I++ ++ LK + ++ + +
Sbjct: 178 LKDKVKRALERPLHREVPILYARHF-----ISIYEKDESMDEHLLKLAKFNFNFLQNLYK 232
Query: 60 KSLWDMSKLWSKID 73
K L+D+S+ W+K D
Sbjct: 233 KELYDLSRWWNKFD 246
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQ 74
+C +C + T +++ L C H H +CL+ +H + CP+C L D
Sbjct: 73 DCIVCLSKL-KTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLPHHHQGHGSDA 131
Query: 75 EIASTPM 81
I++ P+
Sbjct: 132 SISAFPL 138
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSK 60
CPIC D + + CGH+ EC+ ++ K CPVC +
Sbjct: 16 CPICL----DPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQ 56
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62
+C IC+ D+M+ L CGH H CL+ + +CP C SL
Sbjct: 340 DCAICW----DSMQAARKLPCGHLFHNSCLRSWLEQ-DTSCPTCRMSL 382
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 9 ERAMHHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMS 66
E+ HN C IC++ M + C H H CLK+ + + TCP+C L +S
Sbjct: 528 EQLEQHNDICSICYQ----DMNSAVITPCSHFFHPGCLKKW-LYVQETCPLCHCQLKSLS 582
Query: 67 K 67
+
Sbjct: 583 Q 583
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.133 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,826,122
Number of Sequences: 539616
Number of extensions: 1908773
Number of successful extensions: 6885
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 270
Number of HSP's that attempted gapping in prelim test: 6759
Number of HSP's gapped (non-prelim): 369
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)