BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032462
         (140 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FGT|A Chain A, Crystal Structure Of Yych From Bacillus Subtilis
          Length = 417

 Score = 29.3 bits (64), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 30  RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-------LEPL 82
           +I  +N  +   G+  A+ + W N+D +    P  +Y +GT+ +            ++ L
Sbjct: 296 QIPVINSTAKPFGATSAITVQWANDDILSYKRP--NYSLGTNPIKTSETELMGGSEVKML 353

Query: 83  LQTIFALSGPK-TTILLGYEIRSTSVHE----QMLQMWKSNFNVKLVPKAKE 129
           L    A    K   I L Y++ STS ++    ++  +W    N K+VP  K+
Sbjct: 354 LSKQTAYDTDKIDQIFLAYQLVSTSTNDDPLVELEPVWAMKVNGKIVPITKD 405


>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
           Ouabain And The E2p Form Of The Sodium-Potassium Pump
 pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
           Ouabain And The E2p Form Of The Sodium-Potassium Pump
 pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
          Length = 992

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 6   CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 65
           C  + TD +  + L     E +  +    NP +D L + Q + + +G    I+A+   F 
Sbjct: 778 CIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQIGMIQALGGFFT 837

Query: 66  YIIGTDVVYAEHLLEPL 82
           Y     V+ AE+   P+
Sbjct: 838 YF----VILAENGFLPI 850


>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
 pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
          Length = 998

 Score = 27.3 bits (59), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 6   CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 65
           C  + TD +  + L     E +  +    NP +D L + Q + + +G    I+A+   F 
Sbjct: 784 CIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQIGMIQALGGFFT 843

Query: 66  YIIGTDVVYAEHLLEPL 82
           Y     V+ AE+   P+
Sbjct: 844 YF----VILAENGFLPI 856


>pdb|1T5R|A Chain A, Structure Of The Panton-Valentine Leucocidin S Component
          From Staphylococcus Aureus
 pdb|1T5R|B Chain B, Structure Of The Panton-Valentine Leucocidin S Component
          From Staphylococcus Aureus
 pdb|1T5R|C Chain C, Structure Of The Panton-Valentine Leucocidin S Component
          From Staphylococcus Aureus
 pdb|1T5R|D Chain D, Structure Of The Panton-Valentine Leucocidin S Component
          From Staphylococcus Aureus
 pdb|1T5R|E Chain E, Structure Of The Panton-Valentine Leucocidin S Component
          From Staphylococcus Aureus
 pdb|1T5R|F Chain F, Structure Of The Panton-Valentine Leucocidin S Component
          From Staphylococcus Aureus
 pdb|1T5R|G Chain G, Structure Of The Panton-Valentine Leucocidin S Component
          From Staphylococcus Aureus
 pdb|1T5R|H Chain H, Structure Of The Panton-Valentine Leucocidin S Component
          From Staphylococcus Aureus
          Length = 284

 Score = 26.6 bits (57), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 49 LDWGNEDHIKAVAPPFDYIIG 69
           ++ N DHIKA+  PF Y IG
Sbjct: 61 YNYKNTDHIKAMRWPFQYNIG 81


>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
           E2.2k+.Pi State
 pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
           Potassium And Ouabain
          Length = 1028

 Score = 26.6 bits (57), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 6   CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 65
           C  + TD +  + L     E +  +    NP +D L + + + + +G    I+A+   F 
Sbjct: 814 CIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFS 873

Query: 66  YIIGTDVVYAEHLLEPL 82
           Y     V+ AE+   P+
Sbjct: 874 YF----VILAENGFLPM 886


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,275,549
Number of Sequences: 62578
Number of extensions: 156820
Number of successful extensions: 288
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 5
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)