Query 032462
Match_columns 140
No_of_seqs 147 out of 1090
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 14:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 99.9 2.8E-25 6.1E-30 159.5 6.6 106 2-117 64-172 (173)
2 KOG2793 Putative N2,N2-dimethy 99.8 8.4E-18 1.8E-22 126.2 10.2 114 4-123 108-225 (248)
3 KOG3201 Uncharacterized conser 99.6 4.7E-16 1E-20 109.4 6.3 107 7-125 56-165 (201)
4 COG3897 Predicted methyltransf 98.8 2.8E-09 6.2E-14 77.4 4.1 85 2-105 98-184 (218)
5 TIGR00537 hemK_rel_arch HemK-r 98.2 3.1E-05 6.6E-10 55.4 11.4 108 2-129 38-168 (179)
6 COG2227 UbiG 2-polyprenyl-3-me 98.1 5.7E-06 1.2E-10 62.0 4.8 88 1-106 77-167 (243)
7 PRK11207 tellurite resistance 98.0 3.3E-05 7.2E-10 56.3 8.0 82 1-98 48-132 (197)
8 PRK14968 putative methyltransf 98.0 0.00012 2.7E-09 52.1 10.8 109 2-126 42-173 (188)
9 TIGR00406 prmA ribosomal prote 98.0 0.00011 2.3E-09 56.8 10.5 104 2-126 178-283 (288)
10 PF06325 PrmA: Ribosomal prote 98.0 5.2E-05 1.1E-09 58.9 8.7 101 2-125 180-282 (295)
11 PF12847 Methyltransf_18: Meth 98.0 4E-05 8.7E-10 50.2 6.8 83 4-100 24-111 (112)
12 PLN02396 hexaprenyldihydroxybe 98.0 4E-05 8.6E-10 60.2 7.7 90 1-104 149-239 (322)
13 PRK11036 putative S-adenosyl-L 97.9 7.9E-05 1.7E-09 56.3 8.4 89 1-102 62-151 (255)
14 COG2264 PrmA Ribosomal protein 97.9 0.00014 3.1E-09 56.5 9.6 106 2-127 181-289 (300)
15 PF13847 Methyltransf_31: Meth 97.9 0.00061 1.3E-08 47.3 11.7 87 5-105 28-115 (152)
16 PRK05134 bifunctional 3-demeth 97.9 0.00016 3.5E-09 53.6 9.2 85 2-101 67-152 (233)
17 TIGR00477 tehB tellurite resis 97.8 0.00011 2.5E-09 53.4 7.9 82 1-99 48-132 (195)
18 KOG1270 Methyltransferases [Co 97.8 6.1E-05 1.3E-09 57.3 5.8 93 1-105 107-200 (282)
19 PRK11783 rlmL 23S rRNA m(2)G24 97.8 0.00017 3.7E-09 62.1 9.1 118 2-134 557-688 (702)
20 PRK00517 prmA ribosomal protei 97.8 0.00035 7.5E-09 52.8 9.8 98 2-126 138-238 (250)
21 PRK12335 tellurite resistance 97.8 0.00022 4.7E-09 55.0 8.7 82 1-99 138-222 (287)
22 PRK14967 putative methyltransf 97.7 0.00093 2E-08 49.5 11.4 108 2-129 55-187 (223)
23 TIGR00138 gidB 16S rRNA methyl 97.7 0.0012 2.5E-08 47.7 11.6 105 6-130 67-173 (181)
24 smart00828 PKS_MT Methyltransf 97.7 0.00089 1.9E-08 49.3 10.8 105 5-124 23-142 (224)
25 PF08241 Methyltransf_11: Meth 97.6 0.00022 4.7E-09 44.7 5.8 79 2-98 15-95 (95)
26 PF05175 MTS: Methyltransferas 97.6 0.00052 1.1E-08 48.9 7.9 82 7-104 57-144 (170)
27 PRK15128 23S rRNA m(5)C1962 me 97.6 0.0013 2.8E-08 53.1 10.8 126 3-140 240-387 (396)
28 PRK08287 cobalt-precorrin-6Y C 97.5 0.0027 5.9E-08 45.6 10.6 93 6-120 56-150 (187)
29 PF03848 TehB: Tellurite resis 97.4 0.00083 1.8E-08 49.1 7.6 81 1-98 48-131 (192)
30 PRK00216 ubiE ubiquinone/menaq 97.4 0.0028 6E-08 46.6 10.5 81 6-100 77-158 (239)
31 PF05401 NodS: Nodulation prot 97.4 0.00078 1.7E-08 49.4 7.0 105 2-125 62-179 (201)
32 PRK00107 gidB 16S rRNA methylt 97.4 0.0046 9.9E-08 44.9 10.9 100 4-126 68-169 (187)
33 PF10672 Methyltrans_SAM: S-ad 97.3 0.00029 6.3E-09 54.5 4.3 102 3-115 143-252 (286)
34 TIGR01983 UbiG ubiquinone bios 97.3 0.0012 2.6E-08 48.5 7.4 86 2-101 64-150 (224)
35 PF08242 Methyltransf_12: Meth 97.2 0.00019 4.1E-09 46.1 2.1 78 5-96 20-99 (99)
36 COG1092 Predicted SAM-dependen 97.2 0.0048 1E-07 49.8 10.2 122 2-133 236-373 (393)
37 PRK11873 arsM arsenite S-adeno 97.2 0.0095 2.1E-07 45.2 11.5 79 7-100 104-183 (272)
38 PF13489 Methyltransf_23: Meth 97.2 0.00047 1E-08 47.6 3.8 44 61-104 76-119 (161)
39 PLN02244 tocopherol O-methyltr 97.2 0.0034 7.3E-08 49.6 8.9 83 4-100 140-223 (340)
40 cd02440 AdoMet_MTases S-adenos 97.1 0.0058 1.3E-07 37.9 8.0 81 5-99 21-103 (107)
41 PRK00377 cbiT cobalt-precorrin 97.1 0.024 5.2E-07 41.1 12.2 100 6-123 66-167 (198)
42 TIGR00536 hemK_fam HemK family 97.0 0.012 2.6E-07 45.3 10.5 86 5-105 138-249 (284)
43 PLN02585 magnesium protoporphy 97.0 0.0092 2E-07 46.8 9.8 85 1-100 162-249 (315)
44 TIGR02469 CbiT precorrin-6Y C5 97.0 0.018 3.9E-07 37.8 9.6 79 5-100 43-122 (124)
45 TIGR03840 TMPT_Se_Te thiopurin 96.9 0.02 4.4E-07 42.4 10.5 125 1-130 52-191 (213)
46 PLN02336 phosphoethanolamine N 96.9 0.01 2.2E-07 48.6 9.7 84 4-103 288-372 (475)
47 PRK13168 rumA 23S rRNA m(5)U19 96.9 0.012 2.6E-07 48.1 10.0 105 1-124 315-422 (443)
48 PRK00121 trmB tRNA (guanine-N( 96.9 0.0079 1.7E-07 44.0 8.1 103 5-122 64-177 (202)
49 TIGR03533 L3_gln_methyl protei 96.9 0.022 4.9E-07 43.9 10.8 100 5-123 145-271 (284)
50 PRK10909 rsmD 16S rRNA m(2)G96 96.9 0.0064 1.4E-07 44.7 7.4 86 4-104 74-163 (199)
51 TIGR03704 PrmC_rel_meth putati 96.9 0.032 7E-07 42.3 11.4 105 5-129 110-243 (251)
52 PRK15068 tRNA mo(5)U34 methylt 96.8 0.01 2.2E-07 46.6 8.2 85 2-100 141-226 (322)
53 TIGR02716 C20_methyl_CrtF C-20 96.7 0.018 3.8E-07 44.6 9.3 81 5-101 173-255 (306)
54 PRK11805 N5-glutamine S-adenos 96.7 0.019 4.2E-07 44.8 9.5 101 5-124 157-284 (307)
55 TIGR03534 RF_mod_PrmC protein- 96.7 0.035 7.6E-07 41.2 10.6 99 5-123 111-238 (251)
56 TIGR02021 BchM-ChlM magnesium 96.7 0.0084 1.8E-07 44.1 7.1 77 2-95 74-153 (219)
57 PRK14966 unknown domain/N5-glu 96.7 0.052 1.1E-06 44.3 11.9 100 5-123 275-402 (423)
58 PTZ00098 phosphoethanolamine N 96.7 0.011 2.5E-07 44.9 7.8 81 4-101 74-157 (263)
59 PLN02490 MPBQ/MSBQ methyltrans 96.6 0.036 7.8E-07 44.0 10.4 102 5-124 137-254 (340)
60 TIGR00308 TRM1 tRNA(guanine-26 96.6 0.0089 1.9E-07 48.0 7.0 79 5-101 68-148 (374)
61 PRK09328 N5-glutamine S-adenos 96.6 0.062 1.3E-06 40.6 11.4 96 6-120 133-256 (275)
62 PRK07580 Mg-protoporphyrin IX 96.6 0.026 5.6E-07 41.5 9.1 73 2-91 82-157 (230)
63 PRK01544 bifunctional N5-gluta 96.6 0.037 8E-07 46.1 10.6 101 5-123 162-290 (506)
64 TIGR00095 RNA methyltransferas 96.5 0.013 2.9E-07 42.5 7.1 91 2-103 68-162 (189)
65 COG4123 Predicted O-methyltran 96.5 0.043 9.3E-07 41.7 9.9 104 6-124 69-192 (248)
66 PRK13255 thiopurine S-methyltr 96.5 0.052 1.1E-06 40.3 9.9 125 1-130 55-194 (218)
67 PRK10258 biotin biosynthesis p 96.5 0.011 2.4E-07 44.3 6.4 81 2-102 61-142 (251)
68 PRK07402 precorrin-6B methylas 96.4 0.087 1.9E-06 38.0 10.9 109 5-131 64-175 (196)
69 TIGR02752 MenG_heptapren 2-hep 96.3 0.073 1.6E-06 39.2 10.2 80 6-100 71-151 (231)
70 KOG4300 Predicted methyltransf 96.3 0.099 2.1E-06 39.0 10.4 97 4-114 98-197 (252)
71 TIGR00452 methyltransferase, p 96.3 0.033 7.2E-07 43.7 8.4 84 2-100 140-225 (314)
72 PRK04457 spermidine synthase; 96.3 0.035 7.6E-07 42.3 8.3 100 5-120 90-196 (262)
73 TIGR02085 meth_trns_rumB 23S r 96.2 0.073 1.6E-06 42.6 10.4 104 1-125 251-355 (374)
74 TIGR00479 rumA 23S rRNA (uraci 96.2 0.037 8E-07 45.0 8.6 106 2-125 311-419 (431)
75 PRK15001 SAM-dependent 23S rib 96.2 0.062 1.3E-06 43.3 9.6 83 5-101 252-341 (378)
76 PRK08317 hypothetical protein; 96.1 0.074 1.6E-06 38.8 9.1 79 6-100 45-124 (241)
77 PRK15451 tRNA cmo(5)U34 methyl 96.0 0.068 1.5E-06 40.2 8.6 85 4-104 81-168 (247)
78 PRK14902 16S rRNA methyltransf 96.0 0.095 2.1E-06 42.8 10.0 81 5-100 275-379 (444)
79 PRK14901 16S rRNA methyltransf 95.9 0.15 3.2E-06 41.7 10.7 82 6-99 278-383 (434)
80 PF13659 Methyltransf_26: Meth 95.8 0.016 3.5E-07 37.9 4.1 86 3-100 20-115 (117)
81 PF02353 CMAS: Mycolic acid cy 95.8 0.04 8.6E-07 42.4 6.7 79 5-100 85-166 (273)
82 TIGR00740 methyltransferase, p 95.8 0.097 2.1E-06 39.0 8.6 84 5-104 79-165 (239)
83 PRK11705 cyclopropane fatty ac 95.8 0.16 3.5E-06 40.9 10.3 76 4-100 189-267 (383)
84 TIGR01934 MenG_MenH_UbiE ubiqu 95.7 0.3 6.5E-06 35.3 10.7 79 6-101 65-144 (223)
85 PRK00536 speE spermidine synth 95.7 0.19 4.1E-06 38.5 9.8 97 6-121 95-194 (262)
86 PF13649 Methyltransf_25: Meth 95.7 0.029 6.4E-07 36.0 4.7 73 6-94 25-101 (101)
87 PLN02233 ubiquinone biosynthes 95.6 0.14 3E-06 39.0 9.0 83 6-100 99-182 (261)
88 TIGR01177 conserved hypothetic 95.6 0.15 3.2E-06 40.0 9.2 87 2-104 201-298 (329)
89 COG2890 HemK Methylase of poly 95.5 0.033 7.1E-07 43.0 5.3 82 6-104 135-242 (280)
90 TIGR02072 BioC biotin biosynth 95.5 0.042 9.1E-07 40.2 5.7 76 6-100 59-135 (240)
91 PF01861 DUF43: Protein of unk 95.5 0.33 7.1E-06 36.8 10.3 106 4-124 66-176 (243)
92 smart00138 MeTrc Methyltransfe 95.4 0.034 7.4E-07 42.4 5.0 97 5-104 132-246 (264)
93 PRK05031 tRNA (uracil-5-)-meth 95.4 0.12 2.5E-06 41.3 8.2 103 2-124 225-341 (362)
94 PRK09489 rsmC 16S ribosomal RN 95.3 0.31 6.6E-06 38.7 10.3 79 6-102 221-305 (342)
95 PRK00312 pcm protein-L-isoaspa 95.3 0.17 3.7E-06 37.0 8.2 79 2-101 97-176 (212)
96 TIGR00080 pimt protein-L-isoas 95.3 0.09 2E-06 38.6 6.8 74 7-101 104-178 (215)
97 PRK03522 rumB 23S rRNA methylu 95.2 0.16 3.6E-06 39.6 8.5 104 1-125 191-295 (315)
98 PRK04338 N(2),N(2)-dimethylgua 95.2 0.1 2.2E-06 42.0 7.4 77 4-100 79-158 (382)
99 PRK14904 16S rRNA methyltransf 95.2 0.39 8.5E-06 39.3 11.0 102 5-123 275-403 (445)
100 PLN02781 Probable caffeoyl-CoA 95.2 0.37 8E-06 36.1 9.9 107 6-126 94-223 (234)
101 PF02475 Met_10: Met-10+ like- 95.1 0.071 1.5E-06 39.2 5.8 73 4-95 124-197 (200)
102 PF03602 Cons_hypoth95: Conser 95.0 0.067 1.5E-06 38.7 5.3 89 4-104 63-157 (183)
103 COG2265 TrmA SAM-dependent met 95.0 0.42 9E-06 39.2 10.4 104 1-125 311-419 (432)
104 PRK13944 protein-L-isoaspartat 94.9 0.41 9E-06 34.9 9.3 77 5-101 97-174 (205)
105 TIGR00091 tRNA (guanine-N(7)-) 94.8 0.43 9.4E-06 34.5 9.2 104 5-122 40-154 (194)
106 PRK04266 fibrillarin; Provisio 94.4 1.5 3.3E-05 32.7 12.1 103 6-124 97-208 (226)
107 PF01209 Ubie_methyltran: ubiE 94.4 0.52 1.1E-05 35.4 9.0 84 6-104 73-157 (233)
108 COG2520 Predicted methyltransf 94.3 0.59 1.3E-05 37.2 9.4 56 1-70 206-263 (341)
109 PF08003 Methyltransf_9: Prote 94.2 0.4 8.7E-06 37.6 8.2 84 1-98 133-217 (315)
110 PRK01683 trans-aconitate 2-met 94.1 0.46 1E-05 35.6 8.3 74 5-100 55-130 (258)
111 PRK14903 16S rRNA methyltransf 94.1 0.74 1.6E-05 37.7 10.0 86 5-104 262-370 (431)
112 PRK14103 trans-aconitate 2-met 94.0 0.24 5.2E-06 37.3 6.6 72 5-99 53-125 (255)
113 PRK13942 protein-L-isoaspartat 94.0 0.54 1.2E-05 34.5 8.2 74 6-100 102-176 (212)
114 PRK00811 spermidine synthase; 93.9 1 2.2E-05 34.7 9.9 105 5-120 99-213 (283)
115 PLN03075 nicotianamine synthas 93.9 0.83 1.8E-05 35.7 9.4 84 5-101 149-234 (296)
116 PLN02336 phosphoethanolamine N 93.8 0.34 7.3E-06 39.8 7.6 83 2-99 56-141 (475)
117 TIGR00417 speE spermidine synt 93.7 0.87 1.9E-05 34.7 9.2 103 6-120 97-208 (270)
118 PF00891 Methyltransf_2: O-met 93.6 0.33 7.1E-06 36.1 6.6 76 5-104 124-203 (241)
119 PLN02232 ubiquinone biosynthes 93.5 1 2.2E-05 31.6 8.6 79 11-101 3-82 (160)
120 COG2230 Cfa Cyclopropane fatty 93.3 0.7 1.5E-05 35.9 8.0 80 5-101 95-177 (283)
121 KOG2497 Predicted methyltransf 93.2 0.048 1E-06 41.8 1.5 28 62-90 163-190 (262)
122 TIGR00563 rsmB ribosomal RNA s 93.1 2 4.3E-05 35.0 10.9 97 6-114 263-386 (426)
123 TIGR00446 nop2p NOL1/NOP2/sun 92.8 1.3 2.9E-05 33.6 8.9 93 6-113 97-216 (264)
124 PRK13256 thiopurine S-methyltr 92.6 0.67 1.5E-05 34.8 6.9 124 1-127 61-198 (226)
125 KOG1271 Methyltransferases [Ge 92.6 1.1 2.5E-05 32.9 7.8 109 2-127 86-207 (227)
126 PLN02672 methionine S-methyltr 92.6 2.2 4.8E-05 38.9 11.2 119 6-128 143-305 (1082)
127 PLN02823 spermine synthase 92.6 0.96 2.1E-05 35.9 8.1 101 7-120 129-244 (336)
128 PTZ00146 fibrillarin; Provisio 92.6 4.1 8.9E-05 31.8 11.8 67 62-130 201-276 (293)
129 PRK10901 16S rRNA methyltransf 92.5 1.2 2.7E-05 36.2 8.9 81 6-100 269-372 (427)
130 COG4976 Predicted methyltransf 92.4 0.26 5.5E-06 37.4 4.4 68 61-129 186-268 (287)
131 TIGR02143 trmA_only tRNA (urac 92.1 1.3 2.9E-05 35.2 8.5 103 2-124 216-332 (353)
132 COG2813 RsmC 16S RNA G1207 met 92.1 2.6 5.6E-05 33.0 9.7 82 6-105 183-270 (300)
133 PRK10611 chemotaxis methyltran 91.8 0.33 7.1E-06 37.7 4.6 96 6-103 148-265 (287)
134 PRK03612 spermidine synthase; 91.1 2 4.4E-05 36.0 8.9 106 6-120 322-438 (521)
135 COG0742 N6-adenine-specific me 90.9 1.6 3.5E-05 31.8 7.1 89 3-103 63-157 (187)
136 PRK06202 hypothetical protein; 90.5 2.4 5.2E-05 31.3 8.0 78 6-103 89-169 (232)
137 PLN02476 O-methyltransferase 90.3 2.7 6E-05 32.5 8.3 106 5-127 143-269 (278)
138 PLN02366 spermidine synthase 90.2 4.5 9.7E-05 31.7 9.6 100 7-119 117-227 (308)
139 KOG3350 Uncharacterized conser 89.6 1.2 2.5E-05 32.5 5.3 88 46-135 117-205 (217)
140 PRK11727 23S rRNA mA1618 methy 89.3 1 2.3E-05 35.5 5.5 61 5-76 138-202 (321)
141 PRK06922 hypothetical protein; 89.1 2.9 6.3E-05 36.2 8.3 83 5-101 442-538 (677)
142 PRK04148 hypothetical protein; 88.6 0.64 1.4E-05 32.1 3.4 62 1-89 35-101 (134)
143 KOG2904 Predicted methyltransf 88.5 1.5 3.3E-05 34.1 5.6 88 4-104 170-289 (328)
144 TIGR03587 Pse_Me-ase pseudamin 88.4 3 6.5E-05 30.5 7.0 65 5-90 67-134 (204)
145 TIGR03438 probable methyltrans 88.3 5.2 0.00011 31.0 8.7 90 5-105 88-182 (301)
146 PRK01581 speE spermidine synth 88.3 6.3 0.00014 31.9 9.2 105 6-122 175-293 (374)
147 COG2518 Pcm Protein-L-isoaspar 87.7 2.2 4.7E-05 31.7 5.9 78 1-99 90-168 (209)
148 PRK13943 protein-L-isoaspartat 87.7 5.6 0.00012 31.4 8.6 73 7-100 107-180 (322)
149 PRK05785 hypothetical protein; 87.5 3.1 6.7E-05 30.9 6.8 66 5-93 74-140 (226)
150 PF05958 tRNA_U5-meth_tr: tRNA 87.2 5.2 0.00011 31.8 8.2 101 1-124 214-331 (352)
151 PF05724 TPMT: Thiopurine S-me 86.5 1.6 3.4E-05 32.5 4.7 125 1-129 55-193 (218)
152 PF09445 Methyltransf_15: RNA 86.0 0.86 1.9E-05 32.5 2.9 59 1-70 17-76 (163)
153 PF05219 DREV: DREV methyltran 85.6 4.3 9.4E-05 31.2 6.7 75 46-126 140-240 (265)
154 COG4122 Predicted O-methyltran 85.2 6.4 0.00014 29.4 7.4 106 6-126 85-208 (219)
155 COG1041 Predicted DNA modifica 84.3 11 0.00023 30.2 8.6 103 2-125 216-329 (347)
156 PRK11188 rrmJ 23S rRNA methylt 84.2 8.2 0.00018 28.3 7.5 80 43-124 92-187 (209)
157 COG0144 Sun tRNA and rRNA cyto 83.7 16 0.00034 29.2 9.5 25 5-29 182-207 (355)
158 KOG3191 Predicted N6-DNA-methy 82.7 5.8 0.00013 29.1 6.0 112 6-125 69-192 (209)
159 COG1889 NOP1 Fibrillarin-like 82.0 8.5 0.00018 28.8 6.7 63 66-128 142-217 (231)
160 KOG1499 Protein arginine N-met 82.0 4.4 9.6E-05 32.3 5.6 80 2-96 79-163 (346)
161 TIGR00438 rrmJ cell division p 81.7 7.7 0.00017 27.6 6.5 75 44-120 74-164 (188)
162 COG2226 UbiE Methylase involve 81.4 16 0.00035 27.6 8.2 83 6-103 76-159 (238)
163 PF01596 Methyltransf_3: O-met 80.8 4.5 9.8E-05 29.8 5.1 109 5-127 70-196 (205)
164 COG2242 CobL Precorrin-6B meth 80.6 20 0.00043 26.2 12.1 100 6-127 59-162 (187)
165 PF05971 Methyltransf_10: Prot 80.3 3.8 8.3E-05 32.1 4.7 63 4-77 125-191 (299)
166 PHA03411 putative methyltransf 79.8 26 0.00056 27.2 9.0 98 5-123 88-211 (279)
167 KOG2078 tRNA modification enzy 79.4 1.8 4E-05 35.6 2.7 29 2-30 268-297 (495)
168 KOG2361 Predicted methyltransf 78.7 16 0.00034 28.0 7.3 80 6-100 98-183 (264)
169 PRK14121 tRNA (guanine-N(7)-)- 78.1 17 0.00036 29.6 7.9 82 5-103 146-238 (390)
170 COG2263 Predicted RNA methylas 78.0 8 0.00017 28.4 5.4 26 2-27 64-91 (198)
171 KOG3045 Predicted RNA methylas 77.2 12 0.00026 29.1 6.4 63 61-124 226-289 (325)
172 COG1352 CheR Methylase of chem 76.5 6 0.00013 30.5 4.7 106 5-113 129-254 (268)
173 KOG2920 Predicted methyltransf 76.1 0.65 1.4E-05 36.0 -0.7 45 62-106 195-240 (282)
174 PRK11088 rrmA 23S rRNA methylt 75.6 19 0.0004 27.3 7.3 69 6-101 113-182 (272)
175 smart00650 rADc Ribosomal RNA 75.0 18 0.00038 25.2 6.6 57 2-76 32-89 (169)
176 PRK15001 SAM-dependent 23S rib 74.3 27 0.00059 28.2 8.2 75 9-104 69-146 (378)
177 PF01739 CheR: CheR methyltran 71.0 5.5 0.00012 29.1 3.2 61 41-104 117-179 (196)
178 PF02005 TRM: N2,N2-dimethylgu 69.2 5.2 0.00011 32.3 3.0 80 5-101 73-155 (377)
179 PF10237 N6-adenineMlase: Prob 69.0 11 0.00024 26.8 4.3 61 46-106 68-129 (162)
180 PF06080 DUF938: Protein of un 68.8 22 0.00047 26.3 5.9 86 7-98 51-139 (204)
181 PF01269 Fibrillarin: Fibrilla 68.2 12 0.00025 28.3 4.4 63 69-131 143-218 (229)
182 PLN02589 caffeoyl-CoA O-methyl 67.6 33 0.00071 26.0 6.9 78 5-98 104-188 (247)
183 KOG3010 Methyltransferase [Gen 65.8 20 0.00043 27.5 5.3 42 61-103 98-139 (261)
184 PF05148 Methyltransf_8: Hypot 64.9 25 0.00055 26.3 5.6 63 61-124 120-183 (219)
185 COG1867 TRM1 N2,N2-dimethylgua 64.5 7.2 0.00016 31.5 2.9 23 5-27 75-99 (380)
186 PF10354 DUF2431: Domain of un 62.6 41 0.00088 23.8 6.2 63 61-123 73-149 (166)
187 PRK11783 rlmL 23S rRNA m(2)G24 58.5 33 0.00071 30.0 6.1 58 6-76 257-315 (702)
188 COG0300 DltE Short-chain dehyd 58.4 22 0.00049 27.3 4.6 57 1-69 26-90 (265)
189 TIGR00478 tly hemolysin TlyA f 57.3 8.6 0.00019 28.8 2.1 23 1-23 93-118 (228)
190 PRK11933 yebU rRNA (cytosine-C 56.7 50 0.0011 27.5 6.7 23 6-28 139-162 (470)
191 PRK10742 putative methyltransf 56.7 11 0.00024 28.7 2.6 83 1-91 106-195 (250)
192 PF12147 Methyltransf_20: Puta 56.1 1E+02 0.0022 24.4 8.0 87 7-104 163-253 (311)
193 TIGR01444 fkbM_fam methyltrans 54.7 24 0.00051 23.5 3.8 38 6-55 23-61 (143)
194 PF08468 MTS_N: Methyltransfer 54.4 25 0.00054 24.7 4.0 61 62-128 68-131 (155)
195 PRK09291 short chain dehydroge 54.1 25 0.00054 25.7 4.2 57 1-70 22-80 (257)
196 PF14097 SpoVAE: Stage V sporu 53.9 64 0.0014 23.3 5.9 56 8-77 3-67 (180)
197 PRK06139 short chain dehydroge 52.6 23 0.00051 27.7 4.0 57 1-70 27-91 (330)
198 PTZ00338 dimethyladenosine tra 51.8 28 0.0006 27.1 4.2 56 3-75 56-112 (294)
199 PRK08085 gluconate 5-dehydroge 51.1 29 0.00062 25.4 4.1 60 1-73 29-96 (254)
200 KOG0725 Reductases with broad 51.1 30 0.00065 26.4 4.3 61 1-71 28-97 (270)
201 PF06962 rRNA_methylase: Putat 50.7 82 0.0018 21.8 6.4 23 7-29 1-24 (140)
202 TIGR01963 PHB_DH 3-hydroxybuty 49.9 32 0.0007 24.9 4.2 59 2-73 22-88 (255)
203 cd01492 Aos1_SUMO Ubiquitin ac 49.7 32 0.00069 25.0 4.0 70 1-70 40-117 (197)
204 PF01564 Spermine_synth: Sperm 49.5 1.1E+02 0.0024 23.0 8.2 103 6-120 101-213 (246)
205 PF01135 PCMT: Protein-L-isoas 48.9 69 0.0015 23.6 5.7 74 7-101 99-173 (209)
206 PRK08223 hypothetical protein; 48.4 5.4 0.00012 31.0 -0.2 70 1-73 46-125 (287)
207 PRK09242 tropinone reductase; 47.9 38 0.00082 24.8 4.3 59 1-70 29-95 (257)
208 PF07942 N2227: N2227-like pro 47.6 49 0.0011 25.6 4.9 118 1-123 74-239 (270)
209 KOG1227 Putative methyltransfe 47.0 24 0.00052 28.0 3.1 27 3-29 215-243 (351)
210 PRK06124 gluconate 5-dehydroge 46.9 37 0.0008 24.8 4.1 58 2-72 32-97 (256)
211 PF12041 DELLA: Transcriptiona 46.5 5.6 0.00012 24.4 -0.3 21 1-21 4-24 (73)
212 PRK06125 short chain dehydroge 45.1 44 0.00095 24.5 4.3 61 1-73 27-91 (259)
213 PF11965 DUF3479: Domain of un 45.0 15 0.00033 26.2 1.7 47 43-90 32-83 (164)
214 KOG1540 Ubiquinone biosynthesi 43.8 1.6E+02 0.0034 23.1 10.4 80 5-98 130-212 (296)
215 PRK12826 3-ketoacyl-(acyl-carr 43.7 28 0.0006 25.2 3.0 61 2-75 27-95 (251)
216 KOG1500 Protein arginine N-met 43.5 66 0.0014 26.2 5.1 80 2-97 196-279 (517)
217 PF05585 DUF1758: Putative pep 42.5 11 0.00024 26.3 0.7 14 61-74 113-126 (164)
218 PF05185 PRMT5: PRMT5 arginine 42.0 99 0.0021 25.6 6.2 73 7-96 216-293 (448)
219 PRK08251 short chain dehydroge 41.7 55 0.0012 23.7 4.4 59 1-70 22-88 (248)
220 PF06859 Bin3: Bicoid-interact 41.4 18 0.00038 24.2 1.4 39 63-101 1-45 (110)
221 COG1568 Predicted methyltransf 41.2 83 0.0018 24.9 5.2 83 7-106 177-264 (354)
222 PRK05854 short chain dehydroge 40.9 66 0.0014 24.7 4.8 59 1-70 34-100 (313)
223 PRK07097 gluconate 5-dehydroge 40.4 54 0.0012 24.2 4.2 61 1-74 30-98 (265)
224 PRK05876 short chain dehydroge 39.9 47 0.001 24.9 3.8 57 1-70 26-90 (275)
225 PF01963 TraB: TraB family; I 39.7 51 0.0011 24.3 3.9 42 82-124 216-259 (259)
226 PRK05867 short chain dehydroge 39.5 52 0.0011 24.0 3.9 60 1-73 29-96 (253)
227 PRK07063 short chain dehydroge 39.5 58 0.0013 23.9 4.2 61 1-72 27-95 (260)
228 PRK06172 short chain dehydroge 39.1 57 0.0012 23.8 4.1 59 1-72 27-93 (253)
229 PF11968 DUF3321: Putative met 38.6 1.7E+02 0.0037 22.0 7.1 62 61-123 102-178 (219)
230 PRK07062 short chain dehydroge 38.3 68 0.0015 23.6 4.4 61 1-72 28-96 (265)
231 cd01485 E1-1_like Ubiquitin ac 38.2 28 0.00061 25.2 2.3 71 1-71 38-121 (198)
232 PRK07035 short chain dehydroge 38.2 64 0.0014 23.5 4.2 57 1-70 28-92 (252)
233 PRK08643 acetoin reductase; Va 38.0 60 0.0013 23.6 4.1 58 1-71 22-87 (256)
234 PHA01634 hypothetical protein 37.6 42 0.0009 23.4 2.8 28 2-29 47-76 (156)
235 KOG1208 Dehydrogenases with di 37.1 67 0.0015 25.2 4.3 66 1-77 55-129 (314)
236 PRK05650 short chain dehydroge 36.9 42 0.00092 24.8 3.1 57 1-70 20-84 (270)
237 COG2908 Uncharacterized protei 35.6 35 0.00077 25.9 2.4 43 61-105 37-79 (237)
238 TIGR01485 SPP_plant-cyano sucr 35.6 1.1E+02 0.0023 22.7 5.1 49 65-114 1-57 (249)
239 PRK07102 short chain dehydroge 35.5 75 0.0016 23.0 4.2 57 1-69 21-82 (243)
240 PF11599 AviRa: RRNA methyltra 34.8 44 0.00094 25.3 2.8 97 7-104 79-218 (246)
241 cd00755 YgdL_like Family of ac 34.8 64 0.0014 24.2 3.7 70 1-70 30-109 (231)
242 PF01170 UPF0020: Putative RNA 34.4 1.7E+02 0.0036 20.7 7.8 81 7-103 63-153 (179)
243 KOG2671 Putative RNA methylase 34.0 23 0.00051 28.6 1.3 31 2-32 227-261 (421)
244 PRK08339 short chain dehydroge 33.9 86 0.0019 23.2 4.4 58 1-70 28-92 (263)
245 PRK07831 short chain dehydroge 33.0 86 0.0019 23.0 4.2 62 1-73 38-107 (262)
246 PF00585 Thr_dehydrat_C: C-ter 32.8 58 0.0013 20.6 2.8 35 92-126 48-83 (91)
247 PRK06949 short chain dehydroge 32.6 65 0.0014 23.4 3.5 60 1-73 29-96 (258)
248 PRK08293 3-hydroxybutyryl-CoA 32.4 93 0.002 23.7 4.4 26 1-26 22-48 (287)
249 PF01234 NNMT_PNMT_TEMT: NNMT/ 32.3 1.1E+02 0.0024 23.4 4.7 64 62-125 157-238 (256)
250 PRK08277 D-mannonate oxidoredu 32.2 83 0.0018 23.3 4.1 57 1-70 30-94 (278)
251 PRK07478 short chain dehydroge 32.0 56 0.0012 23.8 3.1 57 1-70 26-90 (254)
252 PRK12548 shikimate 5-dehydroge 31.1 74 0.0016 24.4 3.7 13 1-13 145-158 (289)
253 PRK08340 glucose-1-dehydrogena 30.8 87 0.0019 23.0 3.9 55 1-69 20-82 (259)
254 PF02737 3HCDH_N: 3-hydroxyacy 30.7 51 0.0011 23.5 2.5 28 2-29 19-47 (180)
255 PRK05565 fabG 3-ketoacyl-(acyl 30.5 61 0.0013 23.3 3.0 57 2-71 26-91 (247)
256 COG2813 RsmC 16S RNA G1207 met 30.3 1.1E+02 0.0024 24.1 4.4 52 62-119 36-90 (300)
257 TIGR02081 metW methionine bios 30.2 54 0.0012 23.3 2.6 29 61-89 73-101 (194)
258 PRK09489 rsmC 16S ribosomal RN 30.0 1.4E+02 0.0029 23.8 5.0 40 62-105 75-117 (342)
259 PF04816 DUF633: Family of unk 29.9 88 0.0019 23.0 3.7 27 3-29 17-46 (205)
260 PF05762 VWA_CoxE: VWA domain 29.8 86 0.0019 23.1 3.7 40 62-102 149-188 (222)
261 PRK14896 ksgA 16S ribosomal RN 29.6 1.3E+02 0.0027 22.7 4.7 24 2-25 48-72 (258)
262 cd03143 A4_beta-galactosidase_ 29.4 94 0.002 21.1 3.7 37 61-100 51-87 (154)
263 COG2100 Predicted Fe-S oxidore 29.3 1.6E+02 0.0034 23.9 5.1 63 70-132 165-228 (414)
264 PRK07024 short chain dehydroge 29.2 70 0.0015 23.4 3.2 57 1-71 22-86 (257)
265 cd04906 ACT_ThrD-I_1 First of 29.1 1.4E+02 0.0031 18.2 4.3 36 92-127 38-75 (85)
266 PRK05866 short chain dehydroge 28.8 71 0.0015 24.3 3.2 59 1-72 60-126 (293)
267 PRK07890 short chain dehydroge 28.7 1.1E+02 0.0024 22.2 4.2 60 1-73 25-92 (258)
268 PRK07109 short chain dehydroge 28.3 1E+02 0.0023 23.9 4.1 58 1-71 28-93 (334)
269 PRK05875 short chain dehydroge 28.3 69 0.0015 23.7 3.0 58 2-70 28-93 (276)
270 PRK08269 3-hydroxybutyryl-CoA 28.1 1E+02 0.0022 24.1 4.0 28 2-29 10-45 (314)
271 PRK11760 putative 23S rRNA C24 28.0 3.1E+02 0.0068 22.2 6.7 51 61-115 268-323 (357)
272 PRK12823 benD 1,6-dihydroxycyc 28.0 1.1E+02 0.0024 22.2 4.1 56 1-69 28-90 (260)
273 COG1255 Uncharacterized protei 28.0 22 0.00049 24.1 0.3 28 63-90 64-91 (129)
274 COG1213 Predicted sugar nucleo 27.8 31 0.00068 26.2 1.0 21 65-85 100-120 (239)
275 PRK07231 fabG 3-ketoacyl-(acyl 27.3 99 0.0021 22.2 3.7 58 2-73 26-91 (251)
276 PRK06138 short chain dehydroge 27.2 70 0.0015 23.1 2.9 59 1-73 25-91 (252)
277 PRK07576 short chain dehydroge 27.1 1.2E+02 0.0025 22.5 4.1 56 1-69 29-92 (264)
278 PRK08213 gluconate 5-dehydroge 27.0 1.2E+02 0.0026 22.1 4.1 59 1-72 32-98 (259)
279 PRK09186 flagellin modificatio 26.9 1.4E+02 0.003 21.6 4.4 59 1-70 24-90 (256)
280 PRK08265 short chain dehydroge 26.8 1.1E+02 0.0024 22.5 3.9 55 1-71 26-88 (261)
281 PRK06181 short chain dehydroge 26.7 83 0.0018 23.0 3.2 59 2-73 22-88 (263)
282 cd01483 E1_enzyme_family Super 26.6 1.6E+02 0.0035 19.6 4.4 69 1-70 18-96 (143)
283 COG4627 Uncharacterized protei 26.4 32 0.0007 24.7 0.9 69 70-138 48-150 (185)
284 PRK06194 hypothetical protein; 26.4 74 0.0016 23.7 2.9 60 1-73 26-93 (287)
285 PF05430 Methyltransf_30: S-ad 26.3 71 0.0015 21.5 2.5 41 80-126 70-111 (124)
286 COG2870 RfaE ADP-heptose synth 26.3 1.6E+02 0.0034 24.5 4.7 37 43-81 113-159 (467)
287 PRK12429 3-hydroxybutyrate deh 26.2 83 0.0018 22.7 3.1 56 2-70 25-88 (258)
288 PF03141 Methyltransf_29: Puta 26.2 76 0.0017 26.8 3.1 50 47-98 413-465 (506)
289 cd01488 Uba3_RUB Ubiquitin act 26.1 26 0.00056 27.3 0.3 70 1-72 18-98 (291)
290 PF07090 DUF1355: Protein of u 26.0 74 0.0016 22.9 2.7 44 61-104 65-112 (177)
291 PRK07523 gluconate 5-dehydroge 26.0 1.3E+02 0.0029 21.8 4.2 60 1-73 30-97 (255)
292 cd01489 Uba2_SUMO Ubiquitin ac 25.7 34 0.00073 27.0 0.9 71 1-71 18-98 (312)
293 PRK07814 short chain dehydroge 25.5 83 0.0018 23.2 3.0 57 1-70 30-94 (263)
294 PHA00911 21 prohead core scaff 25.1 48 0.0011 24.6 1.6 26 62-87 151-176 (212)
295 PRK06720 hypothetical protein; 25.1 1.6E+02 0.0035 20.6 4.3 56 2-70 37-100 (169)
296 KOG2899 Predicted methyltransf 25.1 1.6E+02 0.0035 22.8 4.4 39 61-99 164-208 (288)
297 COG4221 Short-chain alcohol de 25.0 1.3E+02 0.0027 23.1 3.8 55 1-70 26-88 (246)
298 PRK12939 short chain dehydroge 24.8 1.2E+02 0.0025 21.9 3.6 57 2-71 28-92 (250)
299 PRK12743 oxidoreductase; Provi 24.7 1.5E+02 0.0031 21.7 4.2 58 1-71 22-88 (256)
300 PRK08589 short chain dehydroge 24.6 1.5E+02 0.0033 22.0 4.3 58 1-71 26-90 (272)
301 TIGR00745 apbA_panE 2-dehydrop 24.1 3.1E+02 0.0066 20.4 7.2 35 61-98 57-91 (293)
302 PRK06914 short chain dehydroge 24.0 1.5E+02 0.0033 21.8 4.2 60 1-71 23-89 (280)
303 PRK07832 short chain dehydroge 23.9 1.5E+02 0.0033 21.9 4.2 59 1-71 20-86 (272)
304 PRK05708 2-dehydropantoate 2-r 23.9 2.4E+02 0.0052 21.7 5.4 35 62-99 69-103 (305)
305 PF00107 ADH_zinc_N: Zinc-bind 23.6 91 0.002 20.1 2.6 70 3-98 12-87 (130)
306 cd04885 ACT_ThrD-I Tandem C-te 23.5 1.6E+02 0.0035 17.0 4.1 29 93-121 37-66 (68)
307 PRK08226 short chain dehydroge 22.7 1.5E+02 0.0033 21.5 4.0 60 1-73 26-92 (263)
308 PLN02780 ketoreductase/ oxidor 22.7 1.5E+02 0.0032 23.0 4.0 26 1-26 73-99 (320)
309 PF12163 HobA: DNA replication 22.4 97 0.0021 22.5 2.7 36 79-115 30-65 (180)
310 PRK08267 short chain dehydroge 22.3 1.5E+02 0.0032 21.6 3.8 55 1-70 21-84 (260)
311 COG1179 Dinucleotide-utilizing 22.1 77 0.0017 24.4 2.2 68 1-68 49-126 (263)
312 PRK05872 short chain dehydroge 22.0 1.8E+02 0.0038 22.0 4.3 59 1-73 29-95 (296)
313 PRK07454 short chain dehydroge 21.6 1.9E+02 0.0041 20.7 4.3 61 1-74 26-94 (241)
314 PF04495 GRASP55_65: GRASP55/6 21.4 1.3E+02 0.0028 20.7 3.1 30 61-92 62-92 (138)
315 PRK07889 enoyl-(acyl carrier p 21.3 1.1E+02 0.0024 22.6 2.9 54 1-70 29-92 (256)
316 PF07021 MetW: Methionine bios 21.2 81 0.0018 23.2 2.1 56 42-101 55-110 (193)
317 PRK07774 short chain dehydroge 21.0 1.8E+02 0.0039 20.9 4.0 61 1-74 26-94 (250)
318 PRK06114 short chain dehydroge 20.9 1.8E+02 0.0038 21.2 4.0 61 1-74 28-97 (254)
319 COG1756 Mra1 Uncharacterized c 20.9 84 0.0018 23.6 2.1 49 79-127 66-126 (223)
320 PRK06940 short chain dehydroge 20.6 2.7E+02 0.0057 20.8 5.0 55 4-71 23-84 (275)
321 cd01484 E1-2_like Ubiquitin ac 20.5 49 0.0011 24.8 0.9 72 1-72 18-101 (234)
322 COG0421 SpeE Spermidine syntha 20.4 4.1E+02 0.009 20.6 6.5 82 7-99 102-189 (282)
323 TIGR03206 benzo_BadH 2-hydroxy 20.3 1.3E+02 0.0029 21.6 3.2 57 2-71 24-88 (250)
324 PRK08644 thiamine biosynthesis 20.1 1.7E+02 0.0038 21.3 3.8 23 1-23 47-71 (212)
325 PRK09248 putative hydrolase; V 20.1 3.7E+02 0.008 19.8 6.4 61 61-122 91-157 (246)
326 cd01078 NAD_bind_H4MPT_DH NADP 20.1 1.6E+02 0.0035 20.8 3.5 19 66-84 122-140 (194)
327 KOG1253 tRNA methyltransferase 20.0 62 0.0013 27.4 1.4 23 7-29 136-159 (525)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.92 E-value=2.8e-25 Score=159.55 Aligned_cols=106 Identities=40% Similarity=0.614 Sum_probs=73.0
Q ss_pred ccC--CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeecccCccc
Q 032462 2 ALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHL 78 (140)
Q Consensus 2 A~l--Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-~~~~~D~IlasDviY~~~~ 78 (140)
|++ +++|++||+++++++++.|++.|... ..++++++.|+||++...+. ...+||+||||||+|+++.
T Consensus 64 a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~---------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~ 134 (173)
T PF10294_consen 64 AKLFGAARVVLTDYNEVLELLRRNIELNGSL---------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEEL 134 (173)
T ss_dssp HHT-T-SEEEEEE-S-HHHHHHHHHHTT-----------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGG
T ss_pred HhccCCceEEEeccchhhHHHHHHHHhcccc---------ccccccCcEEEecCcccccccccccCCEEEEecccchHHH
Confidence 445 45999999977999999999999852 35789999999998642222 2468999999999999999
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHh
Q 032462 79 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 117 (140)
Q Consensus 79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~ 117 (140)
+++|++||.+++++++.|+++++.|+.. ...|++++++
T Consensus 135 ~~~L~~tl~~ll~~~~~vl~~~~~R~~~-~~~F~~~~~k 172 (173)
T PF10294_consen 135 FEPLVRTLKRLLKPNGKVLLAYKRRRKS-EQEFFDRLKK 172 (173)
T ss_dssp HHHHHHHHHHHBTT-TTEEEEEE-S-TG-GCHHHHHH--
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCEecHH-HHHHHHHhhh
Confidence 9999999999999988899999999764 5789999865
No 2
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.75 E-value=8.4e-18 Score=126.19 Aligned_cols=114 Identities=34% Similarity=0.490 Sum_probs=91.5
Q ss_pred CCCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCC-ccEEEEeecccCccchHHH
Q 032462 4 LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDVVYAEHLLEPL 82 (140)
Q Consensus 4 lGa~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~-~D~IlasDviY~~~~~~~L 82 (140)
.|++|++||.+.++..|+.|...|..... .-+..+.+..|+||++.......+. +|+||||||+|.++..++|
T Consensus 108 ~~~~v~ltD~~~~~~~L~~~~~~~~~~l~------~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~L 181 (248)
T KOG2793|consen 108 LGAEVVLTDLPKVVENLKFNRDKNNIALN------QLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGL 181 (248)
T ss_pred hcceeccCCchhhHHHHHHhhhhhhhhhh------hcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhH
Confidence 57799999999999999999998887653 1345899999999999765555555 9999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH---hcCeEEe
Q 032462 83 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK---SNFNVKL 123 (140)
Q Consensus 83 ~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~---~~f~v~~ 123 (140)
+.|+..++..++.++++|+.|+...-+.+.-.++ ..|.+.+
T Consensus 182 v~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~ 225 (248)
T KOG2793|consen 182 VKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLLFKKDLKIFDVVQ 225 (248)
T ss_pred HHHHHHHHhcCCeEEEEEecccchHHHHHHHHhhhhhccceeee
Confidence 9999999988889999999998643333333333 4455443
No 3
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.7e-16 Score=109.37 Aligned_cols=107 Identities=22% Similarity=0.216 Sum_probs=84.7
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-cccCCCccEEEEeecccCccchHHHHH
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
.|.+||+ ++.+.++++-+-.|..+ +--+|..+.|-..... ......||+|+||||+|.++.+++|++
T Consensus 56 ~v~ltdgne~svrnv~ki~~~n~~s-----------~~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvd 124 (201)
T KOG3201|consen 56 SVWLTDGNEESVRNVEKIRNSNMAS-----------SLTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVD 124 (201)
T ss_pred eEEEecCCHHHHHHHHHHHhccccc-----------ccceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHH
Confidence 7999999 77899999999899653 2223334444332211 123569999999999999999999999
Q ss_pred HHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEeec
Q 032462 85 TIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP 125 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v~ 125 (140)
||+.+++|.|.+++..++|.+ +.+.|.+.++ .||.+..-+
T Consensus 125 tIk~lL~p~g~Al~fsPRRg~-sL~kF~de~~~~gf~v~l~e 165 (201)
T KOG3201|consen 125 TIKSLLRPSGRALLFSPRRGQ-SLQKFLDEVGTVGFTVCLEE 165 (201)
T ss_pred HHHHHhCcccceeEecCcccc-hHHHHHHHHHhceeEEEecc
Confidence 999999999999999999987 4899999995 699987643
No 4
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=2.8e-09 Score=77.36 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=68.5
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
|+.|| .|+.||+ |..+.+++.|++.|+.. +.....+=.- ....+|+||++|++|+++.+
T Consensus 98 a~aGA~~v~a~d~~P~~~~ai~lNa~angv~-------------i~~~~~d~~g------~~~~~Dl~LagDlfy~~~~a 158 (218)
T COG3897 98 ARAGAAEVVAADIDPWLEQAIRLNAAANGVS-------------ILFTHADLIG------SPPAFDLLLAGDLFYNHTEA 158 (218)
T ss_pred HHhhhHHHHhcCCChHHHHHhhcchhhccce-------------eEEeeccccC------CCcceeEEEeeceecCchHH
Confidence 56798 8999999 77888899999888753 3333333221 25789999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRST 105 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~ 105 (140)
..|+.++..+...+..++++.+.|..
T Consensus 159 ~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 159 DRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 99999888888888889999998864
No 5
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.25 E-value=3.1e-05 Score=55.45 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=73.3
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc---
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--- 77 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--- 77 (140)
+..|.+|+..|. ++.+..+++|++.|+. ++++..-||-+.. ..+||+|++.-..+...
T Consensus 38 ~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~ 99 (179)
T TIGR00537 38 KGKGKCILTTDINPFAVKELRENAKLNNV-------------GLDVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDL 99 (179)
T ss_pred HhcCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEccccccc-----CCcccEEEECCCCCCCcchh
Confidence 345668999998 8899999999987752 3555666664431 34899999775433211
Q ss_pred ------------------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCCCC
Q 032462 78 ------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE 129 (140)
Q Consensus 78 ------------------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~~l 129 (140)
..+.+++.+.++++|+|.+++....... ...+++.+ +.||.++.+....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~--~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 100 RRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG--EPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred cccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC--hHHHHHHHHhCCCeEEEEEEeec
Confidence 1455677777889999998877654432 34556666 46999888765544
No 6
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.08 E-value=5.7e-06 Score=62.05 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=68.8
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc--cccccCCCccEEEEeecccCcc
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--HIKAVAPPFDYIIGTDVVYAEH 77 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~--~~~~~~~~~D~IlasDviY~~~ 77 (140)
||++|++|+..|. ++.++..+.-...|... .+|-... +......+||+|++.+++=.=.
T Consensus 77 mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~------------------i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 77 LARLGASVTGIDASEKPIEVAKLHALESGVN------------------IDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred HHHCCCeeEEecCChHHHHHHHHhhhhcccc------------------ccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 6899999999997 76777777655555432 3443322 1222247999999999999988
Q ss_pred chHHHHHHHHHhcCCCeEEEEEEEecChh
Q 032462 78 LLEPLLQTIFALSGPKTTILLGYEIRSTS 106 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~~ 106 (140)
..+.+++++.++++|+|.++++...|+..
T Consensus 139 dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 139 DPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred CHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 89999999999999999999999999864
No 7
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.03 E-value=3.3e-05 Score=56.33 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=61.4
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--cc
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EH 77 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~ 77 (140)
||..|++|+..|. ++.++.+++++..+.. .++.+...|+.+.+ ...+||+|+++.+++. ++
T Consensus 48 La~~g~~V~gvD~S~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~~----~~~~fD~I~~~~~~~~~~~~ 111 (197)
T PRK11207 48 LAANGFDVTAWDKNPMSIANLERIKAAENL------------DNLHTAVVDLNNLT----FDGEYDFILSTVVLMFLEAK 111 (197)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CcceEEecChhhCC----cCCCcCEEEEecchhhCCHH
Confidence 4667899999998 7899999998877643 23555555554332 1357999999999864 34
Q ss_pred chHHHHHHHHHhcCCCeEEEE
Q 032462 78 LLEPLLQTIFALSGPKTTILL 98 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~ 98 (140)
..+.+++.+.++++|+|.+++
T Consensus 112 ~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 112 TIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred HHHHHHHHHHHHcCCCcEEEE
Confidence 678899999999999998644
No 8
>PRK14968 putative methyltransferase; Provisional
Probab=98.03 E-value=0.00012 Score=52.09 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=70.1
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-----
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----- 75 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~----- 75 (140)
|..|++|+.+|. ++++...++|+..|... ...+.+..-||-+.. . ...||+|++..-.+.
T Consensus 42 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----------~~~~~~~~~d~~~~~--~--~~~~d~vi~n~p~~~~~~~~ 107 (188)
T PRK14968 42 AKNGKKVVGVDINPYAVECAKCNAKLNNIR----------NNGVEVIRSDLFEPF--R--GDKFDVILFNPPYLPTEEEE 107 (188)
T ss_pred HhhcceEEEEECCHHHHHHHHHHHHHcCCC----------CcceEEEeccccccc--c--ccCceEEEECCCcCCCCchh
Confidence 445889999998 78999999999887642 112556666665432 1 237999997544332
Q ss_pred ----------------ccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecC
Q 032462 76 ----------------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK 126 (140)
Q Consensus 76 ----------------~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~ 126 (140)
....+.+++.+...++|+|.+++....-.. .+.+.+.+ +.||.+..+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 108 EWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--EDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred hhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--HHHHHHHHHHCCCeeeeeee
Confidence 112456777788888999987765543221 23445555 45888776544
No 9
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.99 E-value=0.00011 Score=56.79 Aligned_cols=104 Identities=15% Similarity=0.251 Sum_probs=69.8
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
+++|+ +|+..|. +..+...++|+..|... ..+....-+ .. .....+||+|++. ++ ....
T Consensus 178 a~~g~~~V~avDid~~al~~a~~n~~~n~~~-----------~~~~~~~~~---~~--~~~~~~fDlVvan-~~--~~~l 238 (288)
T TIGR00406 178 LKLGAAKVVGIDIDPLAVESARKNAELNQVS-----------DRLQVKLIY---LE--QPIEGKADVIVAN-IL--AEVI 238 (288)
T ss_pred HHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-----------cceEEEecc---cc--cccCCCceEEEEe-cC--HHHH
Confidence 46787 8999998 78999999999998742 223322211 11 1124689999873 33 2334
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeecC
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK 126 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~~ 126 (140)
..++..+.++++|+|.++++...+.. ...+.+.++++|.+.++..
T Consensus 239 ~~ll~~~~~~LkpgG~li~sgi~~~~--~~~v~~~~~~~f~~~~~~~ 283 (288)
T TIGR00406 239 KELYPQFSRLVKPGGWLILSGILETQ--AQSVCDAYEQGFTVVEIRQ 283 (288)
T ss_pred HHHHHHHHHHcCCCcEEEEEeCcHhH--HHHHHHHHHccCceeeEec
Confidence 56777778889999999987765544 4566777765688766543
No 10
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.99 E-value=5.2e-05 Score=58.87 Aligned_cols=101 Identities=20% Similarity=0.324 Sum_probs=67.3
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
|++|| +|+..|. |..+...++|+++|+.. .++.+. . .... ...+||+|+| -++. ..+
T Consensus 180 ~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-----------~~~~v~----~-~~~~--~~~~~dlvvA-NI~~--~vL 238 (295)
T PF06325_consen 180 AKLGAKKVVAIDIDPLAVEAARENAELNGVE-----------DRIEVS----L-SEDL--VEGKFDLVVA-NILA--DVL 238 (295)
T ss_dssp HHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-----------TCEEES----C-TSCT--CCS-EEEEEE-ES-H--HHH
T ss_pred HHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-----------eeEEEE----E-eccc--ccccCCEEEE-CCCH--HHH
Confidence 57899 8999999 77899999999999863 344442 1 1111 2489999985 2222 122
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeec
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP 125 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~ 125 (140)
-.|+..+..+++|+|.++++--.... .+.+.+.+++||.+.+..
T Consensus 239 ~~l~~~~~~~l~~~G~lIlSGIl~~~--~~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 239 LELAPDIASLLKPGGYLILSGILEEQ--EDEVIEAYKQGFELVEER 282 (295)
T ss_dssp HHHHHHCHHHEEEEEEEEEEEEEGGG--HHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhCCCCEEEEccccHHH--HHHHHHHHHCCCEEEEEE
Confidence 34555566678899999888777665 356677776699876543
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.97 E-value=4e-05 Score=50.15 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=61.9
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEee-cc--cCc-cc
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VV--YAE-HL 78 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasD-vi--Y~~-~~ 78 (140)
.|++|+..|. +++++.+++|+..+.. ..++.+..-|+ .. ......+||+|+... +. |.+ +.
T Consensus 24 ~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~i~~~~~d~-~~--~~~~~~~~D~v~~~~~~~~~~~~~~~ 89 (112)
T PF12847_consen 24 PGARVVGVDISPEMLEIARERAAEEGL-----------SDRITFVQGDA-EF--DPDFLEPFDLVICSGFTLHFLLPLDE 89 (112)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTTT-----------TTTEEEEESCC-HG--GTTTSSCEEEEEECSGSGGGCCHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECcc-cc--CcccCCCCCEEEECCCccccccchhH
Confidence 6789999998 8899999999955443 47888888888 21 112356799999999 22 222 34
Q ss_pred hHHHHHHHHHhcCCCeEEEEEE
Q 032462 79 LEPLLQTIFALSGPKTTILLGY 100 (140)
Q Consensus 79 ~~~L~~tl~~ll~~~~~~~~~~ 100 (140)
...+++.+.+.++|+|.+++..
T Consensus 90 ~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 90 RRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEE
Confidence 5667888888899999998864
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.96 E-value=4e-05 Score=60.21 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=66.3
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
||+.|++|+..|. ++.+...+.+.+.+.. ..++.+.. ++.+..+.....||+|++.++++.=.-.
T Consensus 149 La~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----------~~~i~~~~---~dae~l~~~~~~FD~Vi~~~vLeHv~d~ 214 (322)
T PLN02396 149 LARMGATVTGVDAVDKNVKIARLHADMDPV-----------TSTIEYLC---TTAEKLADEGRKFDAVLSLEVIEHVANP 214 (322)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-----------ccceeEEe---cCHHHhhhccCCCCEEEEhhHHHhcCCH
Confidence 4677999999998 7899999887665432 12333332 2222222234689999999999987778
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecC
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
+.+++.+.++++|+|.++++...|.
T Consensus 215 ~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 215 AEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred HHHHHHHHHHcCCCcEEEEEECCcC
Confidence 8999999999999999999876554
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.91 E-value=7.9e-05 Score=56.29 Aligned_cols=89 Identities=21% Similarity=0.216 Sum_probs=65.4
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
||..|.+|+..|. ++++...++++..++. ..++++..-+..+... .....||+|++..+++.-.-.
T Consensus 62 la~~g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~vl~~~~~~ 128 (255)
T PRK11036 62 LAELGHQVILCDLSAEMIQRAKQAAEAKGV-----------SDNMQFIHCAAQDIAQ--HLETPVDLILFHAVLEWVADP 128 (255)
T ss_pred HHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccceEEEEcCHHHHhh--hcCCCCCEEEehhHHHhhCCH
Confidence 4567899999998 8899999998876543 2345555544433211 124689999999998865556
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEe
Q 032462 80 EPLLQTIFALSGPKTTILLGYEI 102 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~ 102 (140)
..++..+..+++|+|.+.+....
T Consensus 129 ~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 129 KSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred HHHHHHHHHHcCCCeEEEEEEEC
Confidence 78889999999999999876543
No 14
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00014 Score=56.45 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=72.7
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
+++|| +|+.+|. |..+.-.++|+++|+.. . .....++.....+ ...+||+|+|- + -.+.+
T Consensus 181 ~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-----------~---~~~~~~~~~~~~~-~~~~~DvIVAN-I--LA~vl 242 (300)
T COG2264 181 AKLGAKKVVGVDIDPQAVEAARENARLNGVE-----------L---LVQAKGFLLLEVP-ENGPFDVIVAN-I--LAEVL 242 (300)
T ss_pred HHcCCceEEEecCCHHHHHHHHHHHHHcCCc-----------h---hhhcccccchhhc-ccCcccEEEeh-h--hHHHH
Confidence 57999 7999999 67899999999999863 1 1122333332222 23699999873 1 12223
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCC
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA 127 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~ 127 (140)
..|..-+..+++|+|.++++--...+ .+.+.+++ +.||.+.++-..
T Consensus 243 ~~La~~~~~~lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 243 VELAPDIKRLLKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred HHHHHHHHHHcCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEEEec
Confidence 35555566678899999998887776 46778888 679998876443
No 15
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.86 E-value=0.00061 Score=47.31 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=72.4
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL 83 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~ 83 (140)
+++|+..|. +++++.++.+++.+.. .++++..-|+.+.+.. ....||+|+...+++.-.....++
T Consensus 28 ~~~i~gvD~s~~~i~~a~~~~~~~~~------------~ni~~~~~d~~~l~~~--~~~~~D~I~~~~~l~~~~~~~~~l 93 (152)
T PF13847_consen 28 GAKIIGVDISEEMIEYAKKRAKELGL------------DNIEFIQGDIEDLPQE--LEEKFDIIISNGVLHHFPDPEKVL 93 (152)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTS------------TTEEEEESBTTCGCGC--SSTTEEEEEEESTGGGTSHHHHHH
T ss_pred CCEEEEEECcHHHHHHhhcccccccc------------cccceEEeehhccccc--cCCCeeEEEEcCchhhccCHHHHH
Confidence 679999998 8899999999988864 3789999999873321 127999999999998888888899
Q ss_pred HHHHHhcCCCeEEEEEEEecCh
Q 032462 84 QTIFALSGPKTTILLGYEIRST 105 (140)
Q Consensus 84 ~tl~~ll~~~~~~~~~~~~R~~ 105 (140)
+.+.++++++|.+++.......
T Consensus 94 ~~~~~~lk~~G~~i~~~~~~~~ 115 (152)
T PF13847_consen 94 KNIIRLLKPGGILIISDPNHND 115 (152)
T ss_dssp HHHHHHEEEEEEEEEEEEEHSH
T ss_pred HHHHHHcCCCcEEEEEECChHH
Confidence 9999999999999988887444
No 16
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.86 E-value=0.00016 Score=53.64 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=63.4
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE 80 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~ 80 (140)
++.|++|+.+|. +..+...+.|+..+.. .+.+...++.+... ....+||+|+++.++..-....
T Consensus 67 ~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~ 131 (233)
T PRK05134 67 ARLGADVTGIDASEENIEVARLHALESGL-------------KIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPA 131 (233)
T ss_pred HHcCCeEEEEcCCHHHHHHHHHHHHHcCC-------------ceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHH
Confidence 446789999998 7788888888876532 33455555554321 1246899999999988877778
Q ss_pred HHHHHHHHhcCCCeEEEEEEE
Q 032462 81 PLLQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 81 ~L~~tl~~ll~~~~~~~~~~~ 101 (140)
.+++.+.++++|+|.++++..
T Consensus 132 ~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 132 SFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred HHHHHHHHHcCCCcEEEEEec
Confidence 899999999999999988754
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.84 E-value=0.00011 Score=53.41 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=58.8
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--cc
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EH 77 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~ 77 (140)
||..|++|+..|. +.++..++++++.++. ++.....+....+ ...+||+|+++.+++. ..
T Consensus 48 la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~~----~~~~fD~I~~~~~~~~~~~~ 110 (195)
T TIGR00477 48 LSLAGYDVRAWDHNPASIASVLDMKARENL-------------PLRTDAYDINAAA----LNEDYDFIFSTVVFMFLQAG 110 (195)
T ss_pred HHHCCCeEEEEECCHHHHHHHHHHHHHhCC-------------CceeEeccchhcc----ccCCCCEEEEecccccCCHH
Confidence 4667999999998 7799999988876543 1333333432211 1347999999998764 34
Q ss_pred chHHHHHHHHHhcCCCeEEEEE
Q 032462 78 LLEPLLQTIFALSGPKTTILLG 99 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~~ 99 (140)
..+.+++.+.++++|+|.+++.
T Consensus 111 ~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 111 RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHhCCCcEEEEE
Confidence 6778899999999999985543
No 18
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.79 E-value=6.1e-05 Score=57.29 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=66.9
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
||++||+|+..|. ++.++..+.-...+-.. ..+-.....++=+..+ ....+||.|++++++=.=...
T Consensus 107 LArlga~V~GID~s~~~V~vA~~h~~~dP~~---------~~~~~y~l~~~~~~~E---~~~~~fDaVvcsevleHV~dp 174 (282)
T KOG1270|consen 107 LARLGAQVTGIDASDDMVEVANEHKKMDPVL---------EGAIAYRLEYEDTDVE---GLTGKFDAVVCSEVLEHVKDP 174 (282)
T ss_pred hHhhCCeeEeecccHHHHHHHHHhhhcCchh---------ccccceeeehhhcchh---hcccccceeeeHHHHHHHhCH
Confidence 7999999999997 77887776654443221 1111112223322222 234569999999999888888
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRST 105 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~ 105 (140)
+.+++.+.++++|+|..+++...|.-
T Consensus 175 ~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 175 QEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred HHHHHHHHHHhCCCCceEeeehhhhH
Confidence 99999999999999999999998874
No 19
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.77 E-value=0.00017 Score=62.07 Aligned_cols=118 Identities=18% Similarity=0.112 Sum_probs=79.9
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe---------
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT--------- 70 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas--------- 70 (140)
|+.|+ +|+..|. +..+...++|++.|+.. ..++++..-|.-+.. .....+||+||.-
T Consensus 557 a~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----------~~~v~~i~~D~~~~l--~~~~~~fDlIilDPP~f~~~~~ 624 (702)
T PRK11783 557 ALGGAKSTTTVDMSNTYLEWAERNFALNGLS----------GRQHRLIQADCLAWL--KEAREQFDLIFIDPPTFSNSKR 624 (702)
T ss_pred HHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----------ccceEEEEccHHHHH--HHcCCCcCEEEECCCCCCCCCc
Confidence 45677 7999998 78999999999999752 134555555533211 1124579998862
Q ss_pred --ecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCCCCCcccC
Q 032462 71 --DVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKESTMWG 134 (140)
Q Consensus 71 --DviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~~l~~~~~ 134 (140)
+..-.......|+..+..+++|+|.++++.-.+..... .+.+ +.|+.++.+.....++++.
T Consensus 625 ~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 625 MEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAKTLPPDFA 688 (702)
T ss_pred cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecCCCCCCCC
Confidence 22111234567888888889999999887776654322 4444 4699999998888888774
No 20
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.77 E-value=0.00035 Score=52.79 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=66.1
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
+++|+ +|+.+|. +..+...++|++.|... ..+.+.. ...+||+|++. +. .+.+
T Consensus 138 ~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-----------~~~~~~~-----------~~~~fD~Vvan-i~--~~~~ 192 (250)
T PRK00517 138 AKLGAKKVLAVDIDPQAVEAARENAELNGVE-----------LNVYLPQ-----------GDLKADVIVAN-IL--ANPL 192 (250)
T ss_pred HHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-----------ceEEEcc-----------CCCCcCEEEEc-Cc--HHHH
Confidence 45787 6999998 77999999999988641 1222110 01279999863 21 2345
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEeecC
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 126 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v~~ 126 (140)
..++..+.++++|+|.++++...+.. .+.+.+.++ .||.+..+..
T Consensus 193 ~~l~~~~~~~LkpgG~lilsgi~~~~--~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 193 LELAPDLARLLKPGGRLILSGILEEQ--ADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHHHHHhcCCCcEEEEEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence 56777778889999999987655543 356666664 5898776543
No 21
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.76 E-value=0.00022 Score=54.96 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=61.4
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--cc
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EH 77 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~ 77 (140)
||..|++|+..|. +..+..+++|++.+.. ++++...|-.... ...+||+|+++.+++. ++
T Consensus 138 la~~g~~V~avD~s~~ai~~~~~~~~~~~l-------------~v~~~~~D~~~~~----~~~~fD~I~~~~vl~~l~~~ 200 (287)
T PRK12335 138 LALLGFDVTAVDINQQSLENLQEIAEKENL-------------NIRTGLYDINSAS----IQEEYDFILSTVVLMFLNRE 200 (287)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEechhccc----ccCCccEEEEcchhhhCCHH
Confidence 4667999999998 7899999999877642 3445444443321 2568999999998764 35
Q ss_pred chHHHHHHHHHhcCCCeEEEEE
Q 032462 78 LLEPLLQTIFALSGPKTTILLG 99 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~~ 99 (140)
..+.+++.+.+.++|+|.+++.
T Consensus 201 ~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 201 RIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHhcCCCcEEEEE
Confidence 7888999999999999986553
No 22
>PRK14967 putative methyltransferase; Provisional
Probab=97.73 E-value=0.00093 Score=49.51 Aligned_cols=108 Identities=20% Similarity=0.262 Sum_probs=71.1
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-- 77 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-- 77 (140)
|+.|+ +|+..|. +..+...++|++.|+. ++.+..-||.+. . ...+||+|++. .=|.+.
T Consensus 55 a~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-------------~~~~~~~d~~~~--~--~~~~fD~Vi~n-pPy~~~~~ 116 (223)
T PRK14967 55 AAAGAGSVTAVDISRRAVRSARLNALLAGV-------------DVDVRRGDWARA--V--EFRPFDVVVSN-PPYVPAPP 116 (223)
T ss_pred HHcCCCeEEEEECCHHHHHHHHHHHHHhCC-------------eeEEEECchhhh--c--cCCCeeEEEEC-CCCCCCCc
Confidence 45676 9999998 7789999999988753 245555566432 1 13589999974 223321
Q ss_pred --------------------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEeecCCCC
Q 032462 78 --------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAKE 129 (140)
Q Consensus 78 --------------------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v~~~~l 129 (140)
....++..+.++++++|.+++.+..... ...+++.++ .+|.++......+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~ 187 (223)
T PRK14967 117 DAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG--VERTLTRLSEAGLDAEVVASQWI 187 (223)
T ss_pred ccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC--HHHHHHHHHHCCCCeEEEEeecc
Confidence 1345666677788999999887665532 346677774 5887776544333
No 23
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.72 E-value=0.0012 Score=47.70 Aligned_cols=105 Identities=12% Similarity=0.017 Sum_probs=71.5
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
++|+..|. +..+..+++|++.++. .++++..-++.+.. ...+||+|++ +.+ ...+.++.
T Consensus 67 ~~V~~iD~s~~~~~~a~~~~~~~~~------------~~i~~i~~d~~~~~----~~~~fD~I~s-~~~---~~~~~~~~ 126 (181)
T TIGR00138 67 LKLTLLESNHKKVAFLREVKAELGL------------NNVEIVNGRAEDFQ----HEEQFDVITS-RAL---ASLNVLLE 126 (181)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhCC------------CCeEEEecchhhcc----ccCCccEEEe-hhh---hCHHHHHH
Confidence 58999998 7789999999987753 24677766665431 2468998875 442 24566778
Q ss_pred HHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCCCCC
Q 032462 85 TIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKES 130 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~~l~ 130 (140)
.+.++++|+|.+++..............+.+ -.||+..+++.-.++
T Consensus 127 ~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 127 LTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP 173 (181)
T ss_pred HHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence 8888999999998775433333233444554 358887777766554
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.69 E-value=0.00089 Score=49.27 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=75.8
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL 83 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~ 83 (140)
+++|+..|. ++.+...++|+..++. ..++++...|..+.+ . ..+||+|++..++..-...+.++
T Consensus 23 ~~~v~gid~s~~~~~~a~~~~~~~gl-----------~~~i~~~~~d~~~~~-~---~~~fD~I~~~~~l~~~~~~~~~l 87 (224)
T smart00828 23 HLQLHGYTISPEQAEVGRERIRALGL-----------QGRIRIFYRDSAKDP-F---PDTYDLVFGFEVIHHIKDKMDLF 87 (224)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC-C---CCCCCEeehHHHHHhCCCHHHHH
Confidence 368999998 7788999998876543 346777777765432 1 34799999999998776788999
Q ss_pred HHHHHhcCCCeEEEEEEEecC-------------hhHHHHHHHHH-HhcCeEEee
Q 032462 84 QTIFALSGPKTTILLGYEIRS-------------TSVHEQMLQMW-KSNFNVKLV 124 (140)
Q Consensus 84 ~tl~~ll~~~~~~~~~~~~R~-------------~~~~~~F~~~~-~~~f~v~~v 124 (140)
+.+.++++|+|.+++...... ..+...+.+.+ +.||.+...
T Consensus 88 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 88 SNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred HHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 999999999999987654221 01134556666 469987654
No 25
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.61 E-value=0.00022 Score=44.74 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=59.2
Q ss_pred ccC-CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 2 ALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 2 A~l-Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
+.. +.+|+.+|. ++.+..++++...+. +.+..-+..+. +.....||+|++..+++.-+..
T Consensus 15 ~~~~~~~v~~~D~~~~~~~~~~~~~~~~~---------------~~~~~~d~~~l---~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 15 AKRGGASVTGIDISEEMLEQARKRLKNEG---------------VSFRQGDAEDL---PFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp HHTTTCEEEEEES-HHHHHHHHHHTTTST---------------EEEEESBTTSS---SS-TT-EEEEEEESHGGGSSHH
T ss_pred HhccCCEEEEEeCCHHHHHHHHhcccccC---------------chheeehHHhC---ccccccccccccccceeeccCH
Confidence 345 679999998 777888877664332 23556665544 3336799999999999988888
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 032462 80 EPLLQTIFALSGPKTTILL 98 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~ 98 (140)
..+++-+.+.++|+|.+++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 8999999999999999875
No 26
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.58 E-value=0.00052 Score=48.86 Aligned_cols=82 Identities=23% Similarity=0.238 Sum_probs=61.1
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-----chH
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLE 80 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-----~~~ 80 (140)
+|+++|. +..+...++|++.|... . +++..-||-+... ..+||+|+.-=-.+... ...
T Consensus 57 ~v~~vDi~~~a~~~a~~n~~~n~~~-----------~-v~~~~~d~~~~~~----~~~fD~Iv~NPP~~~~~~~~~~~~~ 120 (170)
T PF05175_consen 57 KVTAVDINPDALELAKRNAERNGLE-----------N-VEVVQSDLFEALP----DGKFDLIVSNPPFHAGGDDGLDLLR 120 (170)
T ss_dssp EEEEEESBHHHHHHHHHHHHHTTCT-----------T-EEEEESSTTTTCC----TTCEEEEEE---SBTTSHCHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCcc-----------c-ccccccccccccc----ccceeEEEEccchhcccccchhhHH
Confidence 6999997 88999999999999852 2 7888888865432 57999999875544432 467
Q ss_pred HHHHHHHHhcCCCeEEEEEEEecC
Q 032462 81 PLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 81 ~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
.++....+.|+|+|.+++.+..-.
T Consensus 121 ~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 121 DFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp HHHHHHHHHEEEEEEEEEEEETTS
T ss_pred HHHHHHHHhccCCCEEEEEeecCC
Confidence 777777888999999988776433
No 27
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.56 E-value=0.0013 Score=53.14 Aligned_cols=126 Identities=20% Similarity=0.225 Sum_probs=73.4
Q ss_pred cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc-cccccCCCccEEEEeecccCccc-
Q 032462 3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEHL- 78 (140)
Q Consensus 3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~-~~~~~~~~~D~IlasDviY~~~~- 78 (140)
+.|+ +|+..|. +..+..+++|+++|+.. ..++++..-|.-+.. .......+||+|+ +|-=|....
T Consensus 240 ~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----------~~~v~~i~~D~~~~l~~~~~~~~~fDlVi-lDPP~f~~~k 308 (396)
T PRK15128 240 MGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYRDRGEKFDVIV-MDPPKFVENK 308 (396)
T ss_pred hCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CCcEEEEEccHHHHHHHHHhcCCCCCEEE-ECCCCCCCCh
Confidence 3466 8999998 78999999999999752 124555544443221 0111235799998 787775432
Q ss_pred ---------hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-----HhcCeEEeecCC----CCCcccCCCCCCC
Q 032462 79 ---------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLVPKA----KESTMWGNPLGLY 140 (140)
Q Consensus 79 ---------~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-----~~~f~v~~v~~~----~l~~~~~~~~~~~ 140 (140)
...|+....++++|+|.++.+.....-+ .+.|.+.+ +.+-.++.+... +++-....+++.|
T Consensus 309 ~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~-~~~f~~~v~~aa~~~~~~~~~l~~~~~~~DhP~~~~~pe~~Y 387 (396)
T PRK15128 309 SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT-SDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLY 387 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC-HHHHHHHHHHHHHHcCCeEEEEEEcCCCCCCCCCCCCCCcCC
Confidence 3334445566788999988765543332 34454443 234455544333 3333344555554
No 28
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.47 E-value=0.0027 Score=45.61 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=61.3
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
++|+..|. ++.+..+++|++.|.. .++++..-+ ... ....+||+|+.+-. ......+++
T Consensus 56 ~~v~~vD~s~~~~~~a~~n~~~~~~------------~~i~~~~~d---~~~--~~~~~~D~v~~~~~---~~~~~~~l~ 115 (187)
T PRK08287 56 LQVTAIERNPDALRLIKENRQRFGC------------GNIDIIPGE---API--ELPGKADAIFIGGS---GGNLTAIID 115 (187)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCC------------CCeEEEecC---chh--hcCcCCCEEEECCC---ccCHHHHHH
Confidence 59999998 8899999999988753 234433322 211 12357999987533 234567888
Q ss_pred HHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCe
Q 032462 85 TIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFN 120 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~ 120 (140)
.+...++|+|.+++....-. ....+.+.+ +.||.
T Consensus 116 ~~~~~Lk~gG~lv~~~~~~~--~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 116 WSLAHLHPGGRLVLTFILLE--NLHSALAHLEKCGVS 150 (187)
T ss_pred HHHHhcCCCeEEEEEEecHh--hHHHHHHHHHHCCCC
Confidence 88888999999877654322 245666666 45775
No 29
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.44 E-value=0.00083 Score=49.10 Aligned_cols=81 Identities=23% Similarity=0.274 Sum_probs=58.6
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--cc
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EH 77 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~ 77 (140)
||++|.+|++-|. +..++.+++-++.+.. .+++...|..+.. ....||+|+++=++.. ++
T Consensus 48 LA~~G~~VtAvD~s~~al~~l~~~a~~~~l-------------~i~~~~~Dl~~~~----~~~~yD~I~st~v~~fL~~~ 110 (192)
T PF03848_consen 48 LASQGFDVTAVDISPVALEKLQRLAEEEGL-------------DIRTRVADLNDFD----FPEEYDFIVSTVVFMFLQRE 110 (192)
T ss_dssp HHHTT-EEEEEESSHHHHHHHHHHHHHTT--------------TEEEEE-BGCCBS-----TTTEEEEEEESSGGGS-GG
T ss_pred HHHCCCeEEEEECCHHHHHHHHHHHhhcCc-------------eeEEEEecchhcc----ccCCcCEEEEEEEeccCCHH
Confidence 6889999999998 6678888766555432 3777777776543 2458999987644433 57
Q ss_pred chHHHHHHHHHhcCCCeEEEE
Q 032462 78 LLEPLLQTIFALSGPKTTILL 98 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~ 98 (140)
.++.+++-|+..++|+|..++
T Consensus 111 ~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 111 LRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp GHHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHHhhcCCcEEEEE
Confidence 889999999999999998765
No 30
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.44 E-value=0.0028 Score=46.64 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=61.5
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
++|+.+|. +..+...++|+..+.. ..++.+...+..+.. .....||+|+.+-++..-.....+++
T Consensus 77 ~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~~~~~D~I~~~~~l~~~~~~~~~l~ 142 (239)
T PRK00216 77 GEVVGLDFSEGMLAVGREKLRDLGL-----------SGNVEFVQGDAEALP---FPDNSFDAVTIAFGLRNVPDIDKALR 142 (239)
T ss_pred CeEEEEeCCHHHHHHHHHhhccccc-----------ccCeEEEecccccCC---CCCCCccEEEEecccccCCCHHHHHH
Confidence 68999998 7788999988865432 245666666665432 22467999999888877777888999
Q ss_pred HHHHhcCCCeEEEEEE
Q 032462 85 TIFALSGPKTTILLGY 100 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~ 100 (140)
.+..+++|+|.+++..
T Consensus 143 ~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 143 EMYRVLKPGGRLVILE 158 (239)
T ss_pred HHHHhccCCcEEEEEE
Confidence 9999999999887653
No 31
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.41 E-value=0.00078 Score=49.36 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=64.2
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE 80 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~ 80 (140)
|...-+++++|. +..+...++-+.. .++|++...+=-+.. ...+||+|+.|.+.|.=+-.+
T Consensus 62 A~rCd~LlavDis~~Al~~Ar~Rl~~--------------~~~V~~~~~dvp~~~----P~~~FDLIV~SEVlYYL~~~~ 123 (201)
T PF05401_consen 62 APRCDRLLAVDISPRALARARERLAG--------------LPHVEWIQADVPEFW----PEGRFDLIVLSEVLYYLDDAE 123 (201)
T ss_dssp GGGEEEEEEEES-HHHHHHHHHHTTT---------------SSEEEEES-TTT-------SS-EEEEEEES-GGGSSSHH
T ss_pred HHhhCceEEEeCCHHHHHHHHHhcCC--------------CCCeEEEECcCCCCC----CCCCeeEEEEehHhHcCCCHH
Confidence 334348999998 7788888765531 256777766654331 257999999999999965444
Q ss_pred ---HHHHHHHHhcCCCeEEEEEEEecChh--------HHHHHHHHHHhcC-eEEeec
Q 032462 81 ---PLLQTIFALSGPKTTILLGYEIRSTS--------VHEQMLQMWKSNF-NVKLVP 125 (140)
Q Consensus 81 ---~L~~tl~~ll~~~~~~~~~~~~R~~~--------~~~~F~~~~~~~f-~v~~v~ 125 (140)
.+++.+...+.|+|.+++++- |... -.+...+.+++.| +|+++.
T Consensus 124 ~L~~~l~~l~~~L~pgG~LV~g~~-rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~ 179 (201)
T PF05401_consen 124 DLRAALDRLVAALAPGGHLVFGHA-RDANCRRWGHAAGAETVLEMLQEHLTEVERVE 179 (201)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEE--HHHHHHTT-S--HHHHHHHHHHHSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEe-cCCcccccCcccchHHHHHHHHHHhhheeEEE
Confidence 455555566789999999886 4421 1234445555444 466653
No 32
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.39 E-value=0.0046 Score=44.95 Aligned_cols=100 Identities=16% Similarity=0.074 Sum_probs=69.4
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL 82 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L 82 (140)
.+++|+..|. ++.+..+++|++.|.. .++++..-+-.+. .. ..+||+|++.- + ...+.+
T Consensus 68 ~~~~V~giD~s~~~l~~A~~~~~~~~l------------~~i~~~~~d~~~~---~~-~~~fDlV~~~~-~---~~~~~~ 127 (187)
T PRK00107 68 PELKVTLVDSLGKKIAFLREVAAELGL------------KNVTVVHGRAEEF---GQ-EEKFDVVTSRA-V---ASLSDL 127 (187)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHcCC------------CCEEEEeccHhhC---CC-CCCccEEEEcc-c---cCHHHH
Confidence 3579999998 7899999999999864 2256655554432 12 46899999753 1 346778
Q ss_pred HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEeecC
Q 032462 83 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 126 (140)
Q Consensus 83 ~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v~~ 126 (140)
++.+.++++|+|.+++...... ...+.+..+ .|+.++.+..
T Consensus 128 l~~~~~~LkpGG~lv~~~~~~~---~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 128 VELCLPLLKPGGRFLALKGRDP---EEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred HHHHHHhcCCCeEEEEEeCCCh---HHHHHHHHHhcCceEeeeEE
Confidence 8888999999999987755432 345555443 4888665543
No 33
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.33 E-value=0.00029 Score=54.50 Aligned_cols=102 Identities=21% Similarity=0.135 Sum_probs=62.0
Q ss_pred cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc----
Q 032462 3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---- 76 (140)
Q Consensus 3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~---- 76 (140)
+-|| +|+.-|. ...++..++|+++|+.. ...+++..-|.-+.-..-....+||+||.==--|-+
T Consensus 143 ~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----------~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~ 212 (286)
T PF10672_consen 143 AGGAKEVVSVDSSKRALEWAKENAALNGLD----------LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFD 212 (286)
T ss_dssp HTTESEEEEEES-HHHHHHHHHHHHHTT-C----------CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCE
T ss_pred HCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHH
Confidence 4577 8999998 67999999999999853 245555554443211000124589998863222222
Q ss_pred --cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH
Q 032462 77 --HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW 115 (140)
Q Consensus 77 --~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~ 115 (140)
.....|+...-++++|+|.++++.-.+.-+ .+.|.+.+
T Consensus 213 ~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~ 252 (286)
T PF10672_consen 213 LERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAV 252 (286)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHH
Confidence 234567777778889999988777766553 45566666
No 34
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.33 E-value=0.0012 Score=48.50 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=62.2
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE 80 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~ 80 (140)
++.|++|+.+|. +.++...++|+..+.. .++.+...+..+... ....+||+|+++.++..-....
T Consensus 64 ~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~ 129 (224)
T TIGR01983 64 ARLGANVTGIDASEENIEVAKLHAKKDPL------------LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQ 129 (224)
T ss_pred HhcCCeEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHH
Confidence 456778999998 7788999988876542 123444333332211 1136899999999998887788
Q ss_pred HHHHHHHHhcCCCeEEEEEEE
Q 032462 81 PLLQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 81 ~L~~tl~~ll~~~~~~~~~~~ 101 (140)
.+++.+.+.++++|.++++..
T Consensus 130 ~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 130 AFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHHHHHHHhcCCCcEEEEEec
Confidence 888999999999999887654
No 35
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.24 E-value=0.00019 Score=46.13 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=44.3
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccccc-CCCccEEEEeecccCccchHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-APPFDYIIGTDVVYAEHLLEPL 82 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~-~~~~D~IlasDviY~~~~~~~L 82 (140)
+++++.+|. +.++...++.+...... ....+.+...+..... ..+||+|+++.++..-+....+
T Consensus 20 ~~~~~~~D~s~~~l~~a~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~ 85 (99)
T PF08242_consen 20 DARYTGVDISPSMLERARERLAELGND--------------NFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAV 85 (99)
T ss_dssp EEEEEEEESSSSTTSTTCCCHHHCT-----------------EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhhhcCCc--------------ceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHH
Confidence 458999998 77887666666655431 2233344433322111 2599999999999999888899
Q ss_pred HHHHHHhcCCCeEE
Q 032462 83 LQTIFALSGPKTTI 96 (140)
Q Consensus 83 ~~tl~~ll~~~~~~ 96 (140)
++.+.++++|+|.+
T Consensus 86 l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 86 LRNIYRLLKPGGIL 99 (99)
T ss_dssp HHHHTTT-TSS-EE
T ss_pred HHHHHHHcCCCCCC
Confidence 99999999999874
No 36
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.22 E-value=0.0048 Score=49.80 Aligned_cols=122 Identities=19% Similarity=0.164 Sum_probs=77.3
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc---
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--- 76 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--- 76 (140)
|+-|| +||--|. ...|+..++|+++|+.... ...-+..-.+.|-+. ......+||+||.==--|-.
T Consensus 236 a~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~-------~~~~i~~Dvf~~l~~--~~~~g~~fDlIilDPPsF~r~k~ 306 (393)
T COG1092 236 ALGGASEVTSVDLSKRALEWARENAELNGLDGD-------RHRFIVGDVFKWLRK--AERRGEKFDLIILDPPSFARSKK 306 (393)
T ss_pred HhcCCCceEEEeccHHHHHHHHHHHHhcCCCcc-------ceeeehhhHHHHHHH--HHhcCCcccEEEECCcccccCcc
Confidence 45588 9999998 6699999999999986321 001122222222211 11235699999863222221
Q ss_pred ------cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-----HhcCeEEeecCCCCCccc
Q 032462 77 ------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLVPKAKESTMW 133 (140)
Q Consensus 77 ------~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-----~~~f~v~~v~~~~l~~~~ 133 (140)
..+..|+....++++|+|.++++.-.+.-. .+.|.+.+ ..+..++.+.....++++
T Consensus 307 ~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~ 373 (393)
T COG1092 307 QEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-SDLFLEIIARAAAAAGRRAQEIEGEGQPPDH 373 (393)
T ss_pred cchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-HHHHHHHHHHHHHhcCCcEEEeeccCCCCCc
Confidence 235667777778889999999887777654 34555543 235677777777777666
No 37
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.21 E-value=0.0095 Score=45.25 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=56.7
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHHH
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQT 85 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~t 85 (140)
+|+..|. ++.++..++|++.+.. .++.+..-++.+. +.....||+|+..-++......+.+++.
T Consensus 104 ~v~gvD~s~~~l~~A~~~~~~~g~------------~~v~~~~~d~~~l---~~~~~~fD~Vi~~~v~~~~~d~~~~l~~ 168 (272)
T PRK11873 104 KVIGVDMTPEMLAKARANARKAGY------------TNVEFRLGEIEAL---PVADNSVDVIISNCVINLSPDKERVFKE 168 (272)
T ss_pred EEEEECCCHHHHHHHHHHHHHcCC------------CCEEEEEcchhhC---CCCCCceeEEEEcCcccCCCCHHHHHHH
Confidence 7999998 8899999999876543 2444444444322 2224589999977666555556778888
Q ss_pred HHHhcCCCeEEEEEE
Q 032462 86 IFALSGPKTTILLGY 100 (140)
Q Consensus 86 l~~ll~~~~~~~~~~ 100 (140)
+.++++|+|.+++..
T Consensus 169 ~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 169 AFRVLKPGGRFAISD 183 (272)
T ss_pred HHHHcCCCcEEEEEE
Confidence 999999999998753
No 38
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.20 E-value=0.00047 Score=47.58 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=40.8
Q ss_pred CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462 61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
...||+|+++++++.-.....+++.|.++++|+|.++++...+.
T Consensus 76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 57999999999999988899999999999999999999999875
No 39
>PLN02244 tocopherol O-methyltransferase
Probab=97.18 E-value=0.0034 Score=49.60 Aligned_cols=83 Identities=12% Similarity=-0.009 Sum_probs=62.4
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL 82 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L 82 (140)
.|++|+..|. +..+...+++++.++. ..++++..-|..+. +.....||+|++.+++..-.....+
T Consensus 140 ~g~~v~gvD~s~~~i~~a~~~~~~~g~-----------~~~v~~~~~D~~~~---~~~~~~FD~V~s~~~~~h~~d~~~~ 205 (340)
T PLN02244 140 YGANVKGITLSPVQAARANALAAAQGL-----------SDKVSFQVADALNQ---PFEDGQFDLVWSMESGEHMPDKRKF 205 (340)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcCcccC---CCCCCCccEEEECCchhccCCHHHH
Confidence 4789999998 7788888888877653 24566666555432 2235689999999988765556778
Q ss_pred HHHHHHhcCCCeEEEEEE
Q 032462 83 LQTIFALSGPKTTILLGY 100 (140)
Q Consensus 83 ~~tl~~ll~~~~~~~~~~ 100 (140)
++.+.++++|+|.++++.
T Consensus 206 l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 206 VQELARVAAPGGRIIIVT 223 (340)
T ss_pred HHHHHHHcCCCcEEEEEE
Confidence 888899999999988754
No 40
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.11 E-value=0.0058 Score=37.85 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=60.2
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-ccchHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EHLLEPL 82 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-~~~~~~L 82 (140)
+.+++..|. +..+..++++...+. ...+++...++.+... ....++|+|++..+.+. ......+
T Consensus 21 ~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~~~~~~~~~~~ 86 (107)
T cd02440 21 GARVTGVDISPVALELARKAAAALL------------ADNVEVLKGDAEELPP--EADESFDVIISDPPLHHLVEDLARF 86 (107)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhccc------------ccceEEEEcChhhhcc--ccCCceEEEEEccceeehhhHHHHH
Confidence 458999998 667777776333322 2456667777765532 13568999999999888 8888999
Q ss_pred HHHHHHhcCCCeEEEEE
Q 032462 83 LQTIFALSGPKTTILLG 99 (140)
Q Consensus 83 ~~tl~~ll~~~~~~~~~ 99 (140)
++.+...++++|.+++.
T Consensus 87 l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 87 LEEARRLLKPGGVLVLT 103 (107)
T ss_pred HHHHHHHcCCCCEEEEE
Confidence 99999999999998876
No 41
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.10 E-value=0.024 Score=41.13 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=63.4
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
.+|+..|. ++.++.+++|+..|+.. .++.+..-+..+. .+.....||.|+..= .......+++
T Consensus 66 ~~v~avD~~~~~~~~a~~n~~~~g~~-----------~~v~~~~~d~~~~--l~~~~~~~D~V~~~~---~~~~~~~~l~ 129 (198)
T PRK00377 66 GKVYAVDKDEKAINLTRRNAEKFGVL-----------NNIVLIKGEAPEI--LFTINEKFDRIFIGG---GSEKLKEIIS 129 (198)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCC-----------CCeEEEEechhhh--HhhcCCCCCEEEECC---CcccHHHHHH
Confidence 58999998 88999999999987631 3445444333221 122235799988621 1234567788
Q ss_pred HHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEe
Q 032462 85 TIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL 123 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~ 123 (140)
.+..+++|+|.+++. ..+- +....-.+.+ +.||.++.
T Consensus 130 ~~~~~LkpgG~lv~~-~~~~-~~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 130 ASWEIIKKGGRIVID-AILL-ETVNNALSALENIGFNLEI 167 (198)
T ss_pred HHHHHcCCCcEEEEE-eecH-HHHHHHHHHHHHcCCCeEE
Confidence 888889999998763 3332 3345556666 35776443
No 42
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.03 E-value=0.012 Score=45.28 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=59.5
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT------------- 70 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas------------- 70 (140)
+++|+.+|. ++.+...++|++.|+. ..++.+..-||-+.. + ..+||+|++-
T Consensus 138 ~~~v~avDis~~al~~a~~n~~~~~~-----------~~~v~~~~~d~~~~~--~--~~~fDlIvsNPPyi~~~~~~~~~ 202 (284)
T TIGR00536 138 NAEVIAVDISPDALAVAEENAEKNQL-----------EHRVEFIQSNLFEPL--A--GQKIDIIVSNPPYIDEEDLADLP 202 (284)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhccC--c--CCCccEEEECCCCCCcchhhcCC
Confidence 469999998 8899999999998864 235777777876532 1 2379998873
Q ss_pred -ecccCcc-----------chHHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462 71 -DVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRST 105 (140)
Q Consensus 71 -DviY~~~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~ 105 (140)
...|.+. ....++.....+++|+|.+++-......
T Consensus 203 ~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 203 NVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ 249 (284)
T ss_pred cccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 1224332 3455677777788999988776665443
No 43
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.01 E-value=0.0092 Score=46.82 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=52.9
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--c
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--H 77 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~ 77 (140)
|++.|++|+..|. +.++...++|+....... .....+++...|+.+. ...||+|++.|++..- +
T Consensus 162 la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~-------~~~~~~~f~~~Dl~~l------~~~fD~Vv~~~vL~H~p~~ 228 (315)
T PLN02585 162 LALEGAIVSASDISAAMVAEAERRAKEALAAL-------PPEVLPKFEANDLESL------SGKYDTVTCLDVLIHYPQD 228 (315)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHhccccc-------ccccceEEEEcchhhc------CCCcCEEEEcCEEEecCHH
Confidence 3567899999998 789999999887543210 0123455665565321 4689999999998532 2
Q ss_pred chHHHHHHHHHhcCCCeEEEEEE
Q 032462 78 LLEPLLQTIFALSGPKTTILLGY 100 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~~~ 100 (140)
....+++.+..+. + +.++++.
T Consensus 229 ~~~~ll~~l~~l~-~-g~liIs~ 249 (315)
T PLN02585 229 KADGMIAHLASLA-E-KRLIISF 249 (315)
T ss_pred HHHHHHHHHHhhc-C-CEEEEEe
Confidence 3344555555443 3 4445554
No 44
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.95 E-value=0.018 Score=37.81 Aligned_cols=79 Identities=24% Similarity=0.265 Sum_probs=53.3
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL 83 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~ 83 (140)
+.+|+.+|. +..++.+++|++.+.. .++.+..-+.... .+....+||+|+..-. ......++
T Consensus 43 ~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~~--~~~~~~~~D~v~~~~~---~~~~~~~l 105 (124)
T TIGR02469 43 NGRVYAIERNPEALRLIERNARRFGV------------SNIVIVEGDAPEA--LEDSLPEPDRVFIGGS---GGLLQEIL 105 (124)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHhCC------------CceEEEecccccc--ChhhcCCCCEEEECCc---chhHHHHH
Confidence 358999998 7799999999988753 2334333332211 1112358999987532 34456889
Q ss_pred HHHHHhcCCCeEEEEEE
Q 032462 84 QTIFALSGPKTTILLGY 100 (140)
Q Consensus 84 ~tl~~ll~~~~~~~~~~ 100 (140)
+.+.++++|+|.+++..
T Consensus 106 ~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 106 EAIWRRLRPGGRIVLNA 122 (124)
T ss_pred HHHHHHcCCCCEEEEEe
Confidence 99999999999987753
No 45
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.91 E-value=0.02 Score=42.36 Aligned_cols=125 Identities=13% Similarity=0.134 Sum_probs=70.2
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhccccc-CCC--CCCCCCceEEEEeecCCCccccccCCCccEEEEeecc--c
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQ-MNP--GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV--Y 74 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~-~~~--~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi--Y 74 (140)
||..|.+|+..|. +..+..+.. .|+..... ... .......|++..-|-.+.+. ....+||.|+-+-++ .
T Consensus 52 LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l 126 (213)
T TIGR03840 52 LAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIAL 126 (213)
T ss_pred HHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccC
Confidence 5789999999998 767775422 11111000 000 00012345555544443321 113468888876543 2
Q ss_pred CccchHHHHHHHHHhcCCCeE-EEEEEEecC-----h---hHHHHHHHHHHhcCeEEeecCCCCC
Q 032462 75 AEHLLEPLLQTIFALSGPKTT-ILLGYEIRS-----T---SVHEQMLQMWKSNFNVKLVPKAKES 130 (140)
Q Consensus 75 ~~~~~~~L~~tl~~ll~~~~~-~~~~~~~R~-----~---~~~~~F~~~~~~~f~v~~v~~~~l~ 130 (140)
.++..+..++.|.++++|+|. +++++.... + -+.....+.++.+|.++.+.....+
T Consensus 127 ~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~~~~~ 191 (213)
T TIGR03840 127 PEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLESRDVL 191 (213)
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEeecccc
Confidence 345677789999999999996 455554311 1 0123344444667888888776665
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.91 E-value=0.01 Score=48.65 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=65.0
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL 82 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L 82 (140)
.|++|+..|. ++.+...++|... ...++.+...|+.+.+ . ...+||+|++.++++.-...+.+
T Consensus 288 ~~~~v~gvDiS~~~l~~A~~~~~~-------------~~~~v~~~~~d~~~~~-~--~~~~fD~I~s~~~l~h~~d~~~~ 351 (475)
T PLN02336 288 FDVHVVGIDLSVNMISFALERAIG-------------RKCSVEFEVADCTKKT-Y--PDNSFDVIYSRDTILHIQDKPAL 351 (475)
T ss_pred cCCEEEEEECCHHHHHHHHHHhhc-------------CCCceEEEEcCcccCC-C--CCCCEEEEEECCcccccCCHHHH
Confidence 4789999998 7788888877641 1246777777877543 1 13589999999999887777889
Q ss_pred HHHHHHhcCCCeEEEEEEEec
Q 032462 83 LQTIFALSGPKTTILLGYEIR 103 (140)
Q Consensus 83 ~~tl~~ll~~~~~~~~~~~~R 103 (140)
++-+.++++|+|.+++....+
T Consensus 352 l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 352 FRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred HHHHHHHcCCCeEEEEEEecc
Confidence 999999999999998875443
No 47
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.91 E-value=0.012 Score=48.11 Aligned_cols=105 Identities=13% Similarity=0.162 Sum_probs=68.0
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCccc
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHL 78 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~~ 78 (140)
||..+++|+..|. ++.+...++|++.|+. .++++..-||.+... .+.....||+|+. |-=|..
T Consensus 315 la~~~~~V~gvD~s~~al~~A~~n~~~~~~------------~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~-dPPr~g-- 379 (443)
T PRK13168 315 LARQAAEVVGVEGVEAMVERARENARRNGL------------DNVTFYHANLEEDFTDQPWALGGFDKVLL-DPPRAG-- 379 (443)
T ss_pred HHHhCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEeChHHhhhhhhhhcCCCCEEEE-CcCCcC--
Confidence 3556779999998 8899999999998864 347777777754311 1112356998864 554443
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEee
Q 032462 79 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLV 124 (140)
Q Consensus 79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v 124 (140)
....+..|..+ .+++.+|+++... +..+=+..+ +.||.+++|
T Consensus 380 ~~~~~~~l~~~-~~~~ivyvSCnp~---tlaRDl~~L~~~gY~l~~i 422 (443)
T PRK13168 380 AAEVMQALAKL-GPKRIVYVSCNPA---TLARDAGVLVEAGYRLKRA 422 (443)
T ss_pred hHHHHHHHHhc-CCCeEEEEEeChH---HhhccHHHHhhCCcEEEEE
Confidence 23444555553 6889999998543 332223333 568998876
No 48
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.89 E-value=0.0079 Score=43.98 Aligned_cols=103 Identities=12% Similarity=-0.044 Sum_probs=69.4
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeec-CCCccccccCCCccEEEEeecc-cCc-----
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHIKAVAPPFDYIIGTDVV-YAE----- 76 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdW-g~~~~~~~~~~~~D~IlasDvi-Y~~----- 76 (140)
+.+|+..|. ++.+..+++|++.|.. .++++..-++ ..-+. ......||.|+..-+. |..
T Consensus 64 ~~~v~gVD~s~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~l~~-~~~~~~~D~V~~~~~~p~~~~~~~~ 130 (202)
T PRK00121 64 DINFIGIEVHEPGVGKALKKIEEEGL------------TNLRLLCGDAVEVLLD-MFPDGSLDRIYLNFPDPWPKKRHHK 130 (202)
T ss_pred CccEEEEEechHHHHHHHHHHHHcCC------------CCEEEEecCHHHHHHH-HcCccccceEEEECCCCCCCccccc
Confidence 358999998 8899999999988753 3466766666 32210 0124579999865221 111
Q ss_pred --cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEE
Q 032462 77 --HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVK 122 (140)
Q Consensus 77 --~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~ 122 (140)
...+.+++.+.++++|+|.++++...+.. ....++.+ +.|+.++
T Consensus 131 ~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~--~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 131 RRLVQPEFLALYARKLKPGGEIHFATDWEGY--AEYMLEVLSAEGGFLV 177 (202)
T ss_pred cccCCHHHHHHHHHHcCCCCEEEEEcCCHHH--HHHHHHHHHhCccccc
Confidence 02477899999999999999998765543 45566667 4577665
No 49
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.87 E-value=0.022 Score=43.88 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=65.2
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT------------- 70 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas------------- 70 (140)
+++|+.+|. +..+...++|++.|+. ..++.+..-|+.+. .+ ..+||+|++-
T Consensus 145 ~~~v~avDis~~al~~A~~n~~~~~~-----------~~~i~~~~~D~~~~--~~--~~~fD~Iv~NPPy~~~~~~~~l~ 209 (284)
T TIGR03533 145 EAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIQSDLFAA--LP--GRKYDLIVSNPPYVDAEDMADLP 209 (284)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhc--cC--CCCccEEEECCCCCCccchhhCC
Confidence 569999998 8899999999998864 24567777676533 11 3479999963
Q ss_pred -ecccCcc-----------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEe
Q 032462 71 -DVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL 123 (140)
Q Consensus 71 -DviY~~~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~ 123 (140)
++-|++. ....++..+.++++|+|.+++-... .. +.+.+.+. .+|.+..
T Consensus 210 ~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~---~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 210 AEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM---EALEEAYPDVPFTWLE 271 (284)
T ss_pred HhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH---HHHHHHHHhCCCceee
Confidence 2223332 2356677777888999988765443 21 24444453 4776643
No 50
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.86 E-value=0.0064 Score=44.66 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=62.9
Q ss_pred CCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHH
Q 032462 4 LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP 81 (140)
Q Consensus 4 lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~ 81 (140)
.|+ +|+.-|. ++.+..+++|++.|+. .++++..-|+.+.. +....+||+|+ +|-=|.....+.
T Consensus 74 r~a~~V~~vE~~~~a~~~a~~Nl~~~~~------------~~v~~~~~D~~~~l--~~~~~~fDlV~-~DPPy~~g~~~~ 138 (199)
T PRK10909 74 RYAAGATLLEMDRAVAQQLIKNLATLKA------------GNARVVNTNALSFL--AQPGTPHNVVF-VDPPFRKGLLEE 138 (199)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEEchHHHHH--hhcCCCceEEE-ECCCCCCChHHH
Confidence 354 9999997 8899999999999863 24566555553321 11234699886 788898888888
Q ss_pred HHHHHHHh--cCCCeEEEEEEEecC
Q 032462 82 LLQTIFAL--SGPKTTILLGYEIRS 104 (140)
Q Consensus 82 L~~tl~~l--l~~~~~~~~~~~~R~ 104 (140)
++..|... +.+++.+|+.+..+.
T Consensus 139 ~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 139 TINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred HHHHHHHCCCcCCCcEEEEEecCCC
Confidence 98988773 688999999877653
No 51
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.85 E-value=0.032 Score=42.25 Aligned_cols=105 Identities=12% Similarity=0.138 Sum_probs=67.1
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------ 77 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~------ 77 (140)
|++|+..|. +..+...++|+..|+. ++..-||.+... .....+||+|++ |.=|.+.
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~---------------~~~~~D~~~~l~-~~~~~~fDlVv~-NPPy~~~~~~~~~ 172 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGG---------------TVHEGDLYDALP-TALRGRVDILAA-NAPYVPTDAIALM 172 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCC---------------EEEEeechhhcc-hhcCCCEeEEEE-CCCCCCchhhhcC
Confidence 569999998 8899999999988752 233344433211 011346898664 4444321
Q ss_pred ---------------------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCCCC
Q 032462 78 ---------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE 129 (140)
Q Consensus 78 ---------------------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~~l 129 (140)
....++.....+++|+|.+++.+...+ .....+.+ +.+|....+..+++
T Consensus 173 ~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~---~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 173 PPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ---APLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch---HHHHHHHHHHCCCCceeeEcccc
Confidence 123566666778899999998766443 24556666 45898887776665
No 52
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.76 E-value=0.01 Score=46.63 Aligned_cols=85 Identities=15% Similarity=0.070 Sum_probs=56.9
Q ss_pred ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462 2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE 80 (140)
Q Consensus 2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~ 80 (140)
|..|+ .|+..|.... .+.+.|....... ...++.+...+..+. +. ...||+|++..++|......
T Consensus 141 a~~g~~~V~GiD~S~~-~l~q~~a~~~~~~---------~~~~i~~~~~d~e~l---p~-~~~FD~V~s~~vl~H~~dp~ 206 (322)
T PRK15068 141 LGAGAKLVVGIDPSQL-FLCQFEAVRKLLG---------NDQRAHLLPLGIEQL---PA-LKAFDTVFSMGVLYHRRSPL 206 (322)
T ss_pred HHcCCCEEEEEcCCHH-HHHHHHHHHHhcC---------CCCCeEEEeCCHHHC---CC-cCCcCEEEECChhhccCCHH
Confidence 45676 6999997331 2233333222210 124566666665433 22 56899999999999887788
Q ss_pred HHHHHHHHhcCCCeEEEEEE
Q 032462 81 PLLQTIFALSGPKTTILLGY 100 (140)
Q Consensus 81 ~L~~tl~~ll~~~~~~~~~~ 100 (140)
.+++-+.+.++|+|.+++..
T Consensus 207 ~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 207 DHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred HHHHHHHHhcCCCcEEEEEE
Confidence 88999999999999998753
No 53
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.72 E-value=0.018 Score=44.64 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=60.7
Q ss_pred CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462 5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL 82 (140)
Q Consensus 5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L 82 (140)
+.+|++.|.+.+++..++|++..+. ..++++..-|=.+.+ .+.+|+|+.+-+++.- +....+
T Consensus 173 ~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~~-----~~~~D~v~~~~~lh~~~~~~~~~i 236 (306)
T TIGR02716 173 ELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES-----YPEADAVLFCRILYSANEQLSTIM 236 (306)
T ss_pred CCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCCC-----CCCCCEEEeEhhhhcCChHHHHHH
Confidence 3589999999999999999987753 245666665543321 2347999999988753 455678
Q ss_pred HHHHHHhcCCCeEEEEEEE
Q 032462 83 LQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 83 ~~tl~~ll~~~~~~~~~~~ 101 (140)
++.+.+.++|+|++++.-.
T Consensus 237 l~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 237 CKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred HHHHHHhcCCCCEEEEEEe
Confidence 8889999999999988754
No 54
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.72 E-value=0.019 Score=44.76 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=65.0
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT------------- 70 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas------------- 70 (140)
+++|+.+|. +..+...++|++.|+. ..++.+..-|+-+. .+ ..+||+|++-
T Consensus 157 ~~~V~avDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~~--l~--~~~fDlIvsNPPyi~~~~~~~l~ 221 (307)
T PRK11805 157 DAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIESDLFAA--LP--GRRYDLIVSNPPYVDAEDMADLP 221 (307)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCcEEEEECchhhh--CC--CCCccEEEECCCCCCccchhhcC
Confidence 469999998 8899999999998864 24567776676432 11 2479999973
Q ss_pred -ecccCcc-----------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEee
Q 032462 71 -DVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV 124 (140)
Q Consensus 71 -DviY~~~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v 124 (140)
++.|++. ....+++.....++|+|.+++-.... . ..+.+.+. .+|.+..+
T Consensus 222 ~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~---~~~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 222 AEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-R---VHLEEAYPDVPFTWLEF 284 (307)
T ss_pred HhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-H---HHHHHHHhhCCCEEEEe
Confidence 2233332 23567777778899999988754432 2 23334443 36655443
No 55
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.71 E-value=0.035 Score=41.24 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=63.7
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc-------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE------- 76 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~------- 76 (140)
+++|+..|. +..+..++.|+..+.. .++.+..-++.+.. ...+||+|++. .-|..
T Consensus 111 ~~~v~~iD~~~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~----~~~~fD~Vi~n-pPy~~~~~~~~~ 173 (251)
T TIGR03534 111 DARVTAVDISPEALAVARKNAARLGL------------DNVTFLQSDWFEPL----PGGKFDLIVSN-PPYIPEADIHLL 173 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhccC----cCCceeEEEEC-CCCCchhhhhhc
Confidence 459999998 8899999999988753 24666666665431 14689999862 22221
Q ss_pred ---------c-----------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEe
Q 032462 77 ---------H-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL 123 (140)
Q Consensus 77 ---------~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~ 123 (140)
. ....++..+..+++|+|.+++....+.. +...+.+ +.+|....
T Consensus 174 ~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~---~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 174 DPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQG---EAVRALFEAAGFADVE 238 (251)
T ss_pred ChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHH---HHHHHHHHhCCCCceE
Confidence 0 1235667777788999999887654433 2333334 35786433
No 56
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.70 E-value=0.0084 Score=44.07 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=52.4
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cc
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HL 78 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~ 78 (140)
+..|++|+..|. ++++...++++..+.. ..++....-++.+. ...||+|+++++++.- ..
T Consensus 74 a~~~~~v~gvD~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~------~~~fD~ii~~~~l~~~~~~~ 136 (219)
T TIGR02021 74 AKRGAIVKAVDISEQMVQMARNRAQGRDV-----------AGNVEFEVNDLLSL------CGEFDIVVCMDVLIHYPASD 136 (219)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChhhC------CCCcCEEEEhhHHHhCCHHH
Confidence 456789999998 8899999999876543 13456666555443 1589999999998542 33
Q ss_pred hHHHHHHHHHhcCCCeE
Q 032462 79 LEPLLQTIFALSGPKTT 95 (140)
Q Consensus 79 ~~~L~~tl~~ll~~~~~ 95 (140)
...+++.+..+++++..
T Consensus 137 ~~~~l~~i~~~~~~~~~ 153 (219)
T TIGR02021 137 MAKALGHLASLTKERVI 153 (219)
T ss_pred HHHHHHHHHHHhCCCEE
Confidence 45566666666655433
No 57
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.68 E-value=0.052 Score=44.27 Aligned_cols=100 Identities=15% Similarity=0.129 Sum_probs=63.0
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------ 77 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~------ 77 (140)
+++|+.+|. ++.++..++|++.|. .++++..-||.+... + ...+||+|++ +.=|-+.
T Consensus 275 ~a~VtAVDiS~~ALe~AreNa~~~g-------------~rV~fi~gDl~e~~l-~-~~~~FDLIVS-NPPYI~~~e~~l~ 338 (423)
T PRK14966 275 DAFVRASDISPPALETARKNAADLG-------------ARVEFAHGSWFDTDM-P-SEGKWDIIVS-NPPYIENGDKHLL 338 (423)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEcchhcccc-c-cCCCccEEEE-CCCCCCcchhhhc
Confidence 569999998 889999999998764 256777777755321 1 1347998886 3333211
Q ss_pred --------------------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEe
Q 032462 78 --------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL 123 (140)
Q Consensus 78 --------------------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~ 123 (140)
....+++.+...++|+|.+++-...... +...+.+ +.||...+
T Consensus 339 ~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~---e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 339 QGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQG---AAVRGVLAENGFSGVE 402 (423)
T ss_pred chhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHH---HHHHHHHHHCCCcEEE
Confidence 2335666666778899987765544333 2334444 35776433
No 58
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.68 E-value=0.011 Score=44.92 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchH
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLE 80 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~ 80 (140)
.|++|+..|. +..+...+++... ..++.+...|..+.+ .....||+|++.++++.- +...
T Consensus 74 ~~~~v~giD~s~~~~~~a~~~~~~--------------~~~i~~~~~D~~~~~---~~~~~FD~V~s~~~l~h~~~~d~~ 136 (263)
T PTZ00098 74 YGAHVHGVDICEKMVNIAKLRNSD--------------KNKIEFEANDILKKD---FPENTFDMIYSRDAILHLSYADKK 136 (263)
T ss_pred cCCEEEEEECCHHHHHHHHHHcCc--------------CCceEEEECCcccCC---CCCCCeEEEEEhhhHHhCCHHHHH
Confidence 4779999998 7788888776432 134555555554321 224689999999988653 3567
Q ss_pred HHHHHHHHhcCCCeEEEEEEE
Q 032462 81 PLLQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 81 ~L~~tl~~ll~~~~~~~~~~~ 101 (140)
.+++-+.++++|+|.+++...
T Consensus 137 ~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 137 KLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHcCCCcEEEEEEe
Confidence 888999999999999987643
No 59
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.61 E-value=0.036 Score=43.99 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=65.5
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL 83 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~ 83 (140)
+.+|+.+|. ++++...++|...+ ++.+..-|..+ .+.....||+|+.+.++..-...+.++
T Consensus 137 ~~~VtgVD~S~~mL~~A~~k~~~~---------------~i~~i~gD~e~---lp~~~~sFDvVIs~~~L~~~~d~~~~L 198 (340)
T PLN02490 137 AKNVTILDQSPHQLAKAKQKEPLK---------------ECKIIEGDAED---LPFPTDYADRYVSAGSIEYWPDPQRGI 198 (340)
T ss_pred CCEEEEEECCHHHHHHHHHhhhcc---------------CCeEEeccHHh---CCCCCCceeEEEEcChhhhCCCHHHHH
Confidence 358999998 77888888775421 23333333322 122246799999999887655566788
Q ss_pred HHHHHhcCCCeEEEEEEEecCh--------------hHHHHHHHHHH-hcCeEEee
Q 032462 84 QTIFALSGPKTTILLGYEIRST--------------SVHEQMLQMWK-SNFNVKLV 124 (140)
Q Consensus 84 ~tl~~ll~~~~~~~~~~~~R~~--------------~~~~~F~~~~~-~~f~v~~v 124 (140)
+-+.++++|+|.+++....... ...+.+.+.++ .||+..++
T Consensus 199 ~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 199 KEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred HHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 8889999999998765432110 02345556664 59985554
No 60
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.60 E-value=0.0089 Score=47.99 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=52.4
Q ss_pred CC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462 5 GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL 82 (140)
Q Consensus 5 Ga-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L 82 (140)
|+ +|++.|. ++.++.+++|++.|+. .++++..-|-... ......+||+|.. |- |. ...++
T Consensus 68 ga~~Vv~nD~n~~Av~~i~~N~~~N~~------------~~~~v~~~Da~~~--l~~~~~~fDvIdl-DP-fG--s~~~f 129 (374)
T TIGR00308 68 GVREVFANDINPKAVESIKNNVEYNSV------------ENIEVPNEDAANV--LRYRNRKFHVIDI-DP-FG--TPAPF 129 (374)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEchhHHHH--HHHhCCCCCEEEe-CC-CC--CcHHH
Confidence 66 8999998 8899999999999964 2344444333222 1112357998877 88 64 33466
Q ss_pred HHHHHHhcCCCeEEEEEEE
Q 032462 83 LQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 83 ~~tl~~ll~~~~~~~~~~~ 101 (140)
++..-+.+.++|.+++..+
T Consensus 130 ld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 130 VDSAIQASAERGLLLVTAT 148 (374)
T ss_pred HHHHHHhcccCCEEEEEec
Confidence 7666666667777777644
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.60 E-value=0.062 Score=40.61 Aligned_cols=96 Identities=18% Similarity=0.250 Sum_probs=62.7
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe--------------
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-------------- 70 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-------------- 70 (140)
++|+.+|. +..+..+++|+. +.. ..++.+..-||.++.. ..+||+|++.
T Consensus 133 ~~v~~iDis~~~l~~a~~n~~-~~~-----------~~~i~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~~~~~ 196 (275)
T PRK09328 133 AEVTAVDISPEALAVARRNAK-HGL-----------GARVEFLQGDWFEPLP----GGRFDLIVSNPPYIPEADIHLLQP 196 (275)
T ss_pred CEEEEEECCHHHHHHHHHHHH-hCC-----------CCcEEEEEccccCcCC----CCceeEEEECCCcCCcchhhhCCc
Confidence 58999998 789999999998 221 2467777778854421 3689999872
Q ss_pred ecc-cCc-----------cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCe
Q 032462 71 DVV-YAE-----------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFN 120 (140)
Q Consensus 71 Dvi-Y~~-----------~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~ 120 (140)
++. |.+ +.+..++..+..+++|+|.+++....+.. +.+.+.+ +.||.
T Consensus 197 ~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~---~~~~~~l~~~gf~ 256 (275)
T PRK09328 197 EVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQG---EAVRALLAAAGFA 256 (275)
T ss_pred hhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHH---HHHHHHHHhCCCc
Confidence 222 222 12355666777889999999886544332 2344444 45786
No 62
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.60 E-value=0.026 Score=41.45 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=48.2
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-c-cc
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-E-HL 78 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-~-~~ 78 (140)
+..|.+|+..|. +.++...+++...+.. ..++.+...++.. ....||+|++.+++.. + ..
T Consensus 82 ~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~------~~~~fD~v~~~~~l~~~~~~~ 144 (230)
T PRK07580 82 ARRGAKVVASDISPQMVEEARERAPEAGL-----------AGNITFEVGDLES------LLGRFDTVVCLDVLIHYPQED 144 (230)
T ss_pred HHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccCcEEEEcCchh------ccCCcCEEEEcchhhcCCHHH
Confidence 456789999998 7789999988765542 1355666655432 1367999999999833 2 34
Q ss_pred hHHHHHHHHHhcC
Q 032462 79 LEPLLQTIFALSG 91 (140)
Q Consensus 79 ~~~L~~tl~~ll~ 91 (140)
...+++.+..+++
T Consensus 145 ~~~~l~~l~~~~~ 157 (230)
T PRK07580 145 AARMLAHLASLTR 157 (230)
T ss_pred HHHHHHHHHhhcC
Confidence 4455555555443
No 63
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.55 E-value=0.037 Score=46.14 Aligned_cols=101 Identities=19% Similarity=0.360 Sum_probs=63.8
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT------------- 70 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas------------- 70 (140)
+++|+.+|. +..+...++|+..|+. ..++.+..-||-+.. + ..+||+|++-
T Consensus 162 ~~~v~avDis~~al~~A~~N~~~~~l-----------~~~v~~~~~D~~~~~--~--~~~fDlIvsNPPYi~~~~~~~l~ 226 (506)
T PRK01544 162 NANVIATDISLDAIEVAKSNAIKYEV-----------TDRIQIIHSNWFENI--E--KQKFDFIVSNPPYISHSEKSEMA 226 (506)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC-----------ccceeeeecchhhhC--c--CCCccEEEECCCCCCchhhhhcC
Confidence 569999998 7899999999988763 245666666664321 1 3479999961
Q ss_pred -ecc-cCcc-----------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEe
Q 032462 71 -DVV-YAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL 123 (140)
Q Consensus 71 -Dvi-Y~~~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~ 123 (140)
+++ |++. ....++..+..+++|+|.+++.......+ ...+.+ +.+|....
T Consensus 227 ~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~---~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 227 IETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEE---AVTQIFLDHGYNIES 290 (506)
T ss_pred chhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHH---HHHHHHHhcCCCceE
Confidence 121 3321 23446666677889999998865544332 333333 34676433
No 64
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.54 E-value=0.013 Score=42.51 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=58.5
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
++.|| +|++-|. +..+..+++|++.|+.. .++++..-|-.+.-........++.||-.|-=|.....
T Consensus 68 ~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-----------~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~ 136 (189)
T TIGR00095 68 LSRGAKVAFLEEDDRKANQTLKENLALLKSG-----------EQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGAL 136 (189)
T ss_pred HhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-----------ccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcH
Confidence 35688 8999998 78999999999999742 23333322221100000012346777888999988888
Q ss_pred HHHHHHHHH--hcCCCeEEEEEEEec
Q 032462 80 EPLLQTIFA--LSGPKTTILLGYEIR 103 (140)
Q Consensus 80 ~~L~~tl~~--ll~~~~~~~~~~~~R 103 (140)
+.++..+.. ++.+++.+++-+..+
T Consensus 137 ~~~l~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 137 QALLELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred HHHHHHHHHCCCCCCCeEEEEEecCC
Confidence 888887754 566777666655533
No 65
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.52 E-value=0.043 Score=41.70 Aligned_cols=104 Identities=22% Similarity=0.259 Sum_probs=74.7
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-------
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------- 77 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~------- 77 (140)
++|+.-+. +...+..++|+++|.. ..++++..-|-.+-... .....||+|++-=--|...
T Consensus 69 a~I~~VEiq~~~a~~A~~nv~ln~l-----------~~ri~v~~~Di~~~~~~-~~~~~fD~Ii~NPPyf~~~~~~~~~~ 136 (248)
T COG4123 69 AKIVGVEIQEEAAEMAQRNVALNPL-----------EERIQVIEADIKEFLKA-LVFASFDLIICNPPYFKQGSRLNENP 136 (248)
T ss_pred CcEEEEEeCHHHHHHHHHHHHhCcc-----------hhceeEehhhHHHhhhc-ccccccCEEEeCCCCCCCccccCcCh
Confidence 68999997 7788999999999875 36777777665543321 1234799999865555431
Q ss_pred -----------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHh-cCeEEee
Q 032462 78 -----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV 124 (140)
Q Consensus 78 -----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~-~f~v~~v 124 (140)
.++.++++-.++++++|.+.+.++ ++....+++.+++ +|...++
T Consensus 137 ~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r---~erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 137 LRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR---PERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred hhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec---HHHHHHHHHHHHhcCCCceEE
Confidence 267899999999999999988765 3335678888865 7775543
No 66
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.46 E-value=0.052 Score=40.30 Aligned_cols=125 Identities=16% Similarity=0.124 Sum_probs=65.7
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCC---CCCCCceEEEEeecCCCccccccCCCccEEEEeec--cc
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG---SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--VY 74 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~---~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDv--iY 74 (140)
||..|++|+..|. +..++.+.. .|+........+ ......|.+..-|--+... .....||.|+-+-+ -.
T Consensus 55 LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l 129 (218)
T PRK13255 55 LAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIAL 129 (218)
T ss_pred HHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhC
Confidence 5788999999998 667775431 221110000000 0012334433333322211 11246777776553 23
Q ss_pred CccchHHHHHHHHHhcCCCeEEEE-EEEe--cC---h---hHHHHHHHHHHhcCeEEeecCCCCC
Q 032462 75 AEHLLEPLLQTIFALSGPKTTILL-GYEI--RS---T---SVHEQMLQMWKSNFNVKLVPKAKES 130 (140)
Q Consensus 75 ~~~~~~~L~~tl~~ll~~~~~~~~-~~~~--R~---~---~~~~~F~~~~~~~f~v~~v~~~~l~ 130 (140)
.++..+..+..|.++++|+|+.++ +... .. + -+.+...+.++.+|.++.+.....+
T Consensus 130 ~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~~~~ 194 (218)
T PRK13255 130 PEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQDVL 194 (218)
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeecccc
Confidence 355678889999999999986443 3322 11 1 0133444444556888877665543
No 67
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.45 E-value=0.011 Score=44.30 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=55.8
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE 80 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~ 80 (140)
+..|++|+..|. ++++...+.+... ..+..-|..+ .+.....||+|+++.++..-....
T Consensus 61 ~~~~~~v~~~D~s~~~l~~a~~~~~~-----------------~~~~~~d~~~---~~~~~~~fD~V~s~~~l~~~~d~~ 120 (251)
T PRK10258 61 RERGSQVTALDLSPPMLAQARQKDAA-----------------DHYLAGDIES---LPLATATFDLAWSNLAVQWCGNLS 120 (251)
T ss_pred HHcCCeEEEEECCHHHHHHHHhhCCC-----------------CCEEEcCccc---CcCCCCcEEEEEECchhhhcCCHH
Confidence 456889999998 7788877766321 1112222222 122245799999998887666677
Q ss_pred HHHHHHHHhcCCCeEEEEEEEe
Q 032462 81 PLLQTIFALSGPKTTILLGYEI 102 (140)
Q Consensus 81 ~L~~tl~~ll~~~~~~~~~~~~ 102 (140)
.++.-+.+.++|+|.++++.-.
T Consensus 121 ~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 121 TALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred HHHHHHHHHcCCCeEEEEEeCC
Confidence 8888888999999999887543
No 68
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.44 E-value=0.087 Score=38.05 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=65.4
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL 83 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~ 83 (140)
+++|+..|. ++.+..+++|++.++. .++++..-+-.+ ..+.....+|.|.. | .....+.++
T Consensus 64 ~~~V~~vD~s~~~~~~a~~n~~~~~~------------~~v~~~~~d~~~--~~~~~~~~~d~v~~-~---~~~~~~~~l 125 (196)
T PRK07402 64 KGRVIAIERDEEVVNLIRRNCDRFGV------------KNVEVIEGSAPE--CLAQLAPAPDRVCI-E---GGRPIKEIL 125 (196)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCC------------CCeEEEECchHH--HHhhCCCCCCEEEE-E---CCcCHHHHH
Confidence 469999998 8899999999987753 234444322211 11112234565432 2 223457888
Q ss_pred HHHHHhcCCCeEEEEEEEecCh-hHHHHHHHHHH-hcCeEEeecCCCCCc
Q 032462 84 QTIFALSGPKTTILLGYEIRST-SVHEQMLQMWK-SNFNVKLVPKAKEST 131 (140)
Q Consensus 84 ~tl~~ll~~~~~~~~~~~~R~~-~~~~~F~~~~~-~~f~v~~v~~~~l~~ 131 (140)
..+...++|+|.+++....... ......++.++ .++++.++......+
T Consensus 126 ~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (196)
T PRK07402 126 QAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRLET 175 (196)
T ss_pred HHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhccc
Confidence 8888889999998877654332 11233444443 477887776655443
No 69
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.34 E-value=0.073 Score=39.21 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=55.3
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
++|+..|. +..+...++|+..+.. .++.+..-+..+. +....+||+|+.+..+-.-.....+++
T Consensus 71 ~~v~gvD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~l~ 135 (231)
T TIGR02752 71 GHVIGLDFSENMLSVGRQKVKDAGL------------HNVELVHGNAMEL---PFDDNSFDYVTIGFGLRNVPDYMQVLR 135 (231)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCC------------CceEEEEechhcC---CCCCCCccEEEEecccccCCCHHHHHH
Confidence 58999998 7899999999875532 2344443333221 122468999998876654455567788
Q ss_pred HHHHhcCCCeEEEEEE
Q 032462 85 TIFALSGPKTTILLGY 100 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~ 100 (140)
.+.++++|+|.+++..
T Consensus 136 ~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 136 EMYRVVKPGGKVVCLE 151 (231)
T ss_pred HHHHHcCcCeEEEEEE
Confidence 8888899999987654
No 70
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.33 E-value=0.099 Score=38.99 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=70.5
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeecccCccchHH
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEP 81 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-~~~~~D~IlasDviY~~~~~~~ 81 (140)
-|.+||+-|- +.+-+.+.+.++.|+. .++.-...-=| +..+. ...++|.||++=|+-..+....
T Consensus 98 p~~svt~lDpn~~mee~~~ks~~E~k~------------~~~~~fvva~g--e~l~~l~d~s~DtVV~TlvLCSve~~~k 163 (252)
T KOG4300|consen 98 PINSVTCLDPNEKMEEIADKSAAEKKP------------LQVERFVVADG--ENLPQLADGSYDTVVCTLVLCSVEDPVK 163 (252)
T ss_pred CCceEEEeCCcHHHHHHHHHHHhhccC------------cceEEEEeech--hcCcccccCCeeeEEEEEEEeccCCHHH
Confidence 4678999997 7788888988888854 23332222223 22332 3679999999999999998888
Q ss_pred HHHHHHHhcCCCeEEEEEEEecCh-hHHHHHHHH
Q 032462 82 LLQTIFALSGPKTTILLGYEIRST-SVHEQMLQM 114 (140)
Q Consensus 82 L~~tl~~ll~~~~~~~~~~~~R~~-~~~~~F~~~ 114 (140)
-++-++++++|+|++++--..+.+ ++..++++.
T Consensus 164 ~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 164 QLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQ 197 (252)
T ss_pred HHHHHHHhcCCCcEEEEEecccccchHHHHHHHH
Confidence 899999999999999887777764 233444443
No 71
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.28 E-value=0.033 Score=43.70 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=54.9
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
+..|+ .|+..|. +..+...+. ++.... ....+.+..++-.+-+ . ...||+|++..++|.-...
T Consensus 140 ~~~g~~~v~GiDpS~~ml~q~~~-~~~~~~----------~~~~v~~~~~~ie~lp---~-~~~FD~V~s~gvL~H~~dp 204 (314)
T TIGR00452 140 LGHGAKSLVGIDPTVLFLCQFEA-VRKLLD----------NDKRAILEPLGIEQLH---E-LYAFDTVFSMGVLYHRKSP 204 (314)
T ss_pred HHcCCCEEEEEcCCHHHHHHHHH-HHHHhc----------cCCCeEEEECCHHHCC---C-CCCcCEEEEcchhhccCCH
Confidence 45677 7999997 444433221 111111 1234555555443322 1 2479999999999998777
Q ss_pred HHHHHHHHHhcCCCeEEEEEE
Q 032462 80 EPLLQTIFALSGPKTTILLGY 100 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~ 100 (140)
...++.+.+.++|+|.+++..
T Consensus 205 ~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 205 LEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred HHHHHHHHHhcCCCCEEEEEE
Confidence 888999999999999998753
No 72
>PRK04457 spermidine synthase; Provisional
Probab=96.26 E-value=0.035 Score=42.33 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=66.1
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------ 77 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~------ 77 (140)
+++|++-|. ++++...+++...+.. .+++++..=|..+. .+....+||+|+. |. |...
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~-----------~~rv~v~~~Da~~~--l~~~~~~yD~I~~-D~-~~~~~~~~~l 154 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPEN-----------GERFEVIEADGAEY--IAVHRHSTDVILV-DG-FDGEGIIDAL 154 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCC-----------CCceEEEECCHHHH--HHhCCCCCCEEEE-eC-CCCCCCcccc
Confidence 468999998 8899999998765431 24555544332211 1223468999985 53 4433
Q ss_pred chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCe
Q 032462 78 LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~ 120 (140)
....+++.+...++|+|++.+....+.. ....+++.+++.|.
T Consensus 155 ~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~ 196 (262)
T PRK04457 155 CTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE 196 (262)
T ss_pred CcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence 2367888888899999998875544544 35677787777775
No 73
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=96.25 E-value=0.073 Score=42.63 Aligned_cols=104 Identities=10% Similarity=0.061 Sum_probs=66.3
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
||..|++|+..|. +..+...++|++.|+. .++++..-|..+.. .....+||+|+. |-=|. ...
T Consensus 251 la~~~~~v~~vE~~~~av~~a~~N~~~~~~------------~~~~~~~~d~~~~~--~~~~~~~D~vi~-DPPr~-G~~ 314 (374)
T TIGR02085 251 CAGPDTQLTGIEIESEAIACAQQSAQMLGL------------DNLSFAALDSAKFA--TAQMSAPELVLV-NPPRR-GIG 314 (374)
T ss_pred HhhcCCeEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHH--HhcCCCCCEEEE-CCCCC-CCc
Confidence 3556789999998 8899999999999864 24555554443211 111245887654 65553 455
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeec
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP 125 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~ 125 (140)
+.++..|.. ++|++.+|+++. +.+..+=+..+ .||.++.+-
T Consensus 315 ~~~l~~l~~-~~p~~ivyvsc~---p~TlaRDl~~L-~gy~l~~~~ 355 (374)
T TIGR02085 315 KELCDYLSQ-MAPKFILYSSCN---AQTMAKDIAEL-SGYQIERVQ 355 (374)
T ss_pred HHHHHHHHh-cCCCeEEEEEeC---HHHHHHHHHHh-cCceEEEEE
Confidence 666676755 468899999875 33333223333 689888763
No 74
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.22 E-value=0.037 Score=44.98 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=67.0
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc-cccccCCCccEEEEeecccCccch
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~-~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
|+.+.+|+.-|. ++.+..+++|++.|+. .++++..-|+.+.. ........||+|+. |.=+. .+.
T Consensus 311 a~~~~~V~~vE~~~~av~~a~~n~~~~~~------------~nv~~~~~d~~~~l~~~~~~~~~~D~vi~-dPPr~-G~~ 376 (431)
T TIGR00479 311 AKQAKSVVGIEVVPESVEKAQQNAELNGI------------ANVEFLAGTLETVLPKQPWAGQIPDVLLL-DPPRK-GCA 376 (431)
T ss_pred HHhCCEEEEEEcCHHHHHHHHHHHHHhCC------------CceEEEeCCHHHHHHHHHhcCCCCCEEEE-CcCCC-CCC
Confidence 455569999998 8899999999999864 35566555553211 01111346898874 33332 235
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeec
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP 125 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~ 125 (140)
..+++.+.. ++|++.+|+++. +.+..+=++.+ +.||.++.+-
T Consensus 377 ~~~l~~l~~-l~~~~ivyvsc~---p~tlard~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 377 AEVLRTIIE-LKPERIVYVSCN---PATLARDLEFLCKEGYGITWVQ 419 (431)
T ss_pred HHHHHHHHh-cCCCEEEEEcCC---HHHHHHHHHHHHHCCeeEEEEE
Confidence 666676665 567888888765 44444445555 5689887763
No 75
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.18 E-value=0.062 Score=43.26 Aligned_cols=83 Identities=11% Similarity=0.049 Sum_probs=54.6
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc------c
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE------H 77 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~------~ 77 (140)
+++|+++|. +..+...++|++.|... ...++++. |++.... ....+||+|++- --|.. .
T Consensus 252 ~~~V~~vD~S~~Av~~A~~N~~~n~~~---------~~~~v~~~---~~D~l~~-~~~~~fDlIlsN-PPfh~~~~~~~~ 317 (378)
T PRK15001 252 QAKVVFVDESPMAVASSRLNVETNMPE---------ALDRCEFM---INNALSG-VEPFRFNAVLCN-PPFHQQHALTDN 317 (378)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCcc---------cCceEEEE---Ecccccc-CCCCCEEEEEEC-cCcccCccCCHH
Confidence 469999998 77999999999999742 11233333 4433211 113479999883 22221 2
Q ss_pred chHHHHHHHHHhcCCCeEEEEEEE
Q 032462 78 LLEPLLQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~~~~ 101 (140)
....++....+.++|+|.+++...
T Consensus 318 ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 318 VAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHHHHHHHHhcccCCEEEEEEe
Confidence 345677777888999999998864
No 76
>PRK08317 hypothetical protein; Provisional
Probab=96.11 E-value=0.074 Score=38.78 Aligned_cols=79 Identities=16% Similarity=0.053 Sum_probs=56.7
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
++|+.+|. +..+...+.+.... ..++.+...+..+.+ .....||+|++..++-.-.....+++
T Consensus 45 ~~v~~~d~~~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~ 108 (241)
T PRK08317 45 GRVVGIDRSEAMLALAKERAAGL-------------GPNVEFVRGDADGLP---FPDGSFDAVRSDRVLQHLEDPARALA 108 (241)
T ss_pred cEEEEEeCCHHHHHHHHHHhhCC-------------CCceEEEecccccCC---CCCCCceEEEEechhhccCCHHHHHH
Confidence 58999998 77888888773211 234555555544322 22468999999998877666788999
Q ss_pred HHHHhcCCCeEEEEEE
Q 032462 85 TIFALSGPKTTILLGY 100 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~ 100 (140)
.+.++++|+|.+++..
T Consensus 109 ~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 109 EIARVLRPGGRVVVLD 124 (241)
T ss_pred HHHHHhcCCcEEEEEe
Confidence 9999999999987654
No 77
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.00 E-value=0.068 Score=40.17 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--ccchH
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLE 80 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~~~~ 80 (140)
.|++|+..|. ++++...++|+..+.. ..++++..-+..+. + ...+|+|+++=++.. +....
T Consensus 81 ~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~~---~--~~~~D~vv~~~~l~~l~~~~~~ 144 (247)
T PRK15451 81 DNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDI---A--IENASMVVLNFTLQFLEPSERQ 144 (247)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhhC---C--CCCCCEEehhhHHHhCCHHHHH
Confidence 3679999998 8899999999987653 23455555443322 1 245899887655432 23456
Q ss_pred HHHHHHHHhcCCCeEEEEEEEecC
Q 032462 81 PLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 81 ~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
.+++.+.+.++|+|.++++...+.
T Consensus 145 ~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 145 ALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred HHHHHHHHhcCCCCEEEEEEecCC
Confidence 789999999999999999876654
No 78
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.99 E-value=0.095 Score=42.83 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=51.5
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-------- 75 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-------- 75 (140)
+++|+..|. +..+..+++|++.++. .++++..-|..+... .....||+|+ +|.=+.
T Consensus 275 ~~~v~avDi~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~~--~~~~~fD~Vl-~D~Pcsg~G~~~~~ 339 (444)
T PRK14902 275 TGKVVALDIHEHKLKLIEENAKRLGL------------TNIETKALDARKVHE--KFAEKFDKIL-VDAPCSGLGVIRRK 339 (444)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCCcccccc--hhcccCCEEE-EcCCCCCCeeeccC
Confidence 358999998 8899999999998764 236666656544311 1225799987 332111
Q ss_pred ------c--c-------chHHHHHHHHHhcCCCeEEEEEE
Q 032462 76 ------E--H-------LLEPLLQTIFALSGPKTTILLGY 100 (140)
Q Consensus 76 ------~--~-------~~~~L~~tl~~ll~~~~~~~~~~ 100 (140)
. . ....++.....+++|+|.++.+.
T Consensus 340 p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 340 PDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred cchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 1 0 11345666677788998876543
No 79
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.90 E-value=0.15 Score=41.69 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=48.4
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-cccCCCccEEEE------eecccC-c
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIG------TDVVYA-E 76 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-~~~~~~~D~Ila------sDviY~-~ 76 (140)
++|++-|. +..+..+++|++.++. .+|++..-|-.+.... +.....||.|+. .-++.. +
T Consensus 278 g~v~a~D~~~~rl~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p 345 (434)
T PRK14901 278 GEIWAVDRSASRLKKLQENAQRLGL------------KSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHP 345 (434)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCC------------CeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCc
Confidence 48999997 8899999999998864 2344444332221100 012357999884 112211 1
Q ss_pred c---------------chHHHHHHHHHhcCCCeEEEEE
Q 032462 77 H---------------LLEPLLQTIFALSGPKTTILLG 99 (140)
Q Consensus 77 ~---------------~~~~L~~tl~~ll~~~~~~~~~ 99 (140)
+ ....++.....+++|+|.++.+
T Consensus 346 ~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys 383 (434)
T PRK14901 346 DARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA 383 (434)
T ss_pred chhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 1245566666677898876544
No 80
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=95.82 E-value=0.016 Score=37.93 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=59.5
Q ss_pred cCC-CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc----
Q 032462 3 LLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---- 76 (140)
Q Consensus 3 ~lG-a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~---- 76 (140)
+.| ++|+..|. +..+...+.|+..+.. ..++++..-|+.+... .....+||+|++.=-....
T Consensus 20 ~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----------~~~~~~~~~D~~~~~~-~~~~~~~D~Iv~npP~~~~~~~~ 87 (117)
T PF13659_consen 20 RRGAARVTGVDIDPEAVELARRNLPRNGL-----------DDRVEVIVGDARDLPE-PLPDGKFDLIVTNPPYGPRSGDK 87 (117)
T ss_dssp HHCTCEEEEEESSHHHHHHHHHHCHHCTT-----------TTTEEEEESHHHHHHH-TCTTT-EEEEEE--STTSBTT--
T ss_pred HHCCCeEEEEEECHHHHHHHHHHHHHccC-----------CceEEEEECchhhchh-hccCceeEEEEECCCCccccccc
Confidence 345 69999998 8899999999999864 2457777777754431 1236789999875444321
Q ss_pred ----cchHHHHHHHHHhcCCCeEEEEEE
Q 032462 77 ----HLLEPLLQTIFALSGPKTTILLGY 100 (140)
Q Consensus 77 ----~~~~~L~~tl~~ll~~~~~~~~~~ 100 (140)
.....+++.+.++++|+|.+++..
T Consensus 88 ~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 88 AALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp --GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 234677888888899999987754
No 81
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=95.81 E-value=0.04 Score=42.39 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=57.3
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEP 81 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~ 81 (140)
|++|+.-.. ++-...+++-++..+. ...+.+..-||.+. ..+||-|+.-+++-.= ...+.
T Consensus 85 g~~v~gitlS~~Q~~~a~~~~~~~gl-----------~~~v~v~~~D~~~~------~~~fD~IvSi~~~Ehvg~~~~~~ 147 (273)
T PF02353_consen 85 GCHVTGITLSEEQAEYARERIREAGL-----------EDRVEVRLQDYRDL------PGKFDRIVSIEMFEHVGRKNYPA 147 (273)
T ss_dssp --EEEEEES-HHHHHHHHHHHHCSTS-----------SSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHH
T ss_pred CcEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEeecccc------CCCCCEEEEEechhhcChhHHHH
Confidence 888777666 7778888888876653 35778888888643 2399999999987663 67899
Q ss_pred HHHHHHHhcCCCeEEEEEE
Q 032462 82 LLQTIFALSGPKTTILLGY 100 (140)
Q Consensus 82 L~~tl~~ll~~~~~~~~~~ 100 (140)
+++.+.++|+|+|.+++-.
T Consensus 148 ~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 148 FFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp HHHHHHHHSETTEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEe
Confidence 9999999999999997643
No 82
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.79 E-value=0.097 Score=38.97 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=60.2
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEP 81 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~ 81 (140)
|++|+..|. ++++..+++++..... ..++.+..-++.+.+ ...+|+|+++.++-.- +....
T Consensus 79 ~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-----~~~~d~v~~~~~l~~~~~~~~~~ 142 (239)
T TIGR00740 79 NVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHVE-----IKNASMVILNFTLQFLPPEDRIA 142 (239)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhCC-----CCCCCEEeeecchhhCCHHHHHH
Confidence 679999998 8899999999865432 235666666665432 2358988877764432 23567
Q ss_pred HHHHHHHhcCCCeEEEEEEEecC
Q 032462 82 LLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 82 L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
+++.+.+.++|+|.++++-..+.
T Consensus 143 ~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 143 LLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred HHHHHHHhcCCCeEEEEeecccC
Confidence 88888889999999999876654
No 83
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.77 E-value=0.16 Score=40.89 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=55.6
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchH
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLE 80 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~ 80 (140)
.|++|+..|. ++.+...++++. . ..+++...++.+. ...||.|++..++..- ...+
T Consensus 189 ~g~~V~giDlS~~~l~~A~~~~~--~-------------l~v~~~~~D~~~l------~~~fD~Ivs~~~~ehvg~~~~~ 247 (383)
T PRK11705 189 YGVSVVGVTISAEQQKLAQERCA--G-------------LPVEIRLQDYRDL------NGQFDRIVSVGMFEHVGPKNYR 247 (383)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhc--c-------------CeEEEEECchhhc------CCCCCEEEEeCchhhCChHHHH
Confidence 4789999998 788888888773 1 1245555555322 3579999998877642 3457
Q ss_pred HHHHHHHHhcCCCeEEEEEE
Q 032462 81 PLLQTIFALSGPKTTILLGY 100 (140)
Q Consensus 81 ~L~~tl~~ll~~~~~~~~~~ 100 (140)
.+++.+.++++|+|.+++..
T Consensus 248 ~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 248 TYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred HHHHHHHHHcCCCcEEEEEE
Confidence 88999999999999998754
No 84
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=95.68 E-value=0.3 Score=35.32 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=55.1
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
++++..|. +..+...++|.. . ..++.+...+-.+.+ ....+||+|+.+..+-.......+++
T Consensus 65 ~~~~~iD~~~~~~~~~~~~~~--~------------~~~i~~~~~d~~~~~---~~~~~~D~i~~~~~~~~~~~~~~~l~ 127 (223)
T TIGR01934 65 GKVTGVDFSSEMLEVAKKKSE--L------------PLNIEFIQADAEALP---FEDNSFDAVTIAFGLRNVTDIQKALR 127 (223)
T ss_pred ceEEEEECCHHHHHHHHHHhc--c------------CCCceEEecchhcCC---CCCCcEEEEEEeeeeCCcccHHHHHH
Confidence 38999998 778888888775 1 123444443333221 12357999999888766666778888
Q ss_pred HHHHhcCCCeEEEEEEE
Q 032462 85 TIFALSGPKTTILLGYE 101 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~~ 101 (140)
.+..+++|+|.+++...
T Consensus 128 ~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 128 EMYRVLKPGGRLVILEF 144 (223)
T ss_pred HHHHHcCCCcEEEEEEe
Confidence 88999999999887543
No 85
>PRK00536 speE spermidine synthase; Provisional
Probab=95.67 E-value=0.19 Score=38.54 Aligned_cols=97 Identities=8% Similarity=-0.047 Sum_probs=60.1
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
.+|++-|. ++|++..++=+-.....+ ..+++++.. |-.. ....+||+|| .|..|.++ +.+
T Consensus 95 ~~v~mVeID~~Vv~~~k~~lP~~~~~~--------~DpRv~l~~--~~~~----~~~~~fDVII-vDs~~~~~----fy~ 155 (262)
T PRK00536 95 THVDFVQADEKILDSFISFFPHFHEVK--------NNKNFTHAK--QLLD----LDIKKYDLII-CLQEPDIH----KID 155 (262)
T ss_pred CeeEEEECCHHHHHHHHHHCHHHHHhh--------cCCCEEEee--hhhh----ccCCcCCEEE-EcCCCChH----HHH
Confidence 38999999 679998887433322222 235555554 4211 1236899999 88887754 447
Q ss_pred HHHHhcCCCeEEEE--EEEecChhHHHHHHHHHHhcCeE
Q 032462 85 TIFALSGPKTTILL--GYEIRSTSVHEQMLQMWKSNFNV 121 (140)
Q Consensus 85 tl~~ll~~~~~~~~--~~~~R~~~~~~~F~~~~~~~f~v 121 (140)
.+++.|+|+|.+.. ....-..+.+..-.+.+++.|..
T Consensus 156 ~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~ 194 (262)
T PRK00536 156 GLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSI 194 (262)
T ss_pred HHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCc
Confidence 77888999998876 22222233344555556667773
No 86
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.65 E-value=0.029 Score=36.00 Aligned_cols=73 Identities=25% Similarity=0.274 Sum_probs=52.4
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeec---ccCccchHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---VYAEHLLEP 81 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDv---iY~~~~~~~ 81 (140)
.+++..|. ++.+...+++..... .++++..-|..+- +....+||+|+++-+ .+.++....
T Consensus 25 ~~~~gvD~s~~~l~~~~~~~~~~~-------------~~~~~~~~D~~~l---~~~~~~~D~v~~~~~~~~~~~~~~~~~ 88 (101)
T PF13649_consen 25 SRVIGVDISPEMLELAKKRFSEDG-------------PKVRFVQADARDL---PFSDGKFDLVVCSGLSLHHLSPEELEA 88 (101)
T ss_dssp SEEEEEES-HHHHHHHHHHSHHTT-------------TTSEEEESCTTCH---HHHSSSEEEEEE-TTGGGGSSHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHhchhcC-------------CceEEEECCHhHC---cccCCCeeEEEEcCCccCCCCHHHHHH
Confidence 68999998 789999998887622 2556666666542 234679999999766 223457788
Q ss_pred HHHHHHHhcCCCe
Q 032462 82 LLQTIFALSGPKT 94 (140)
Q Consensus 82 L~~tl~~ll~~~~ 94 (140)
|++.+.++++|+|
T Consensus 89 ll~~~~~~l~pgG 101 (101)
T PF13649_consen 89 LLRRIARLLRPGG 101 (101)
T ss_dssp HHHHHHHTEEEEE
T ss_pred HHHHHHHHhCCCC
Confidence 8888888888765
No 87
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.62 E-value=0.14 Score=38.96 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=57.6
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
++|+..|. ++++...+++....... ...++++..-+-.+ .+.....||+|+.+.++-+-.....+++
T Consensus 99 ~~V~gvD~S~~ml~~A~~r~~~~~~~---------~~~~i~~~~~d~~~---lp~~~~sfD~V~~~~~l~~~~d~~~~l~ 166 (261)
T PLN02233 99 GKVMGLDFSSEQLAVAASRQELKAKS---------CYKNIEWIEGDATD---LPFDDCYFDAITMGYGLRNVVDRLKAMQ 166 (261)
T ss_pred CEEEEEECCHHHHHHHHHHhhhhhhc---------cCCCeEEEEccccc---CCCCCCCEeEEEEecccccCCCHHHHHH
Confidence 48999998 88999888765432211 12345555444332 2233567999999988877666777888
Q ss_pred HHHHhcCCCeEEEEEE
Q 032462 85 TIFALSGPKTTILLGY 100 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~ 100 (140)
-+.+.++|+|.+++..
T Consensus 167 ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 167 EMYRVLKPGSRVSILD 182 (261)
T ss_pred HHHHHcCcCcEEEEEE
Confidence 8889999999987764
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.55 E-value=0.15 Score=40.03 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=57.2
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc----
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---- 76 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~---- 76 (140)
|..|++|+..|. +.++...+.|++.++.. .+.+..-|-. ..+.....||.|+. |.=|..
T Consensus 201 a~~~~~v~g~Di~~~~~~~a~~nl~~~g~~------------~i~~~~~D~~---~l~~~~~~~D~Iv~-dPPyg~~~~~ 264 (329)
T TIGR01177 201 GLMGAKVIGCDIDWKMVAGARINLEHYGIE------------DFFVKRGDAT---KLPLSSESVDAIAT-DPPYGRSTTA 264 (329)
T ss_pred HHhCCeEEEEcCCHHHHHHHHHHHHHhCCC------------CCeEEecchh---cCCcccCCCCEEEE-CCCCcCcccc
Confidence 456889999998 77999999999876541 1333222222 22222457898775 333321
Q ss_pred ------cchHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462 77 ------HLLEPLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 77 ------~~~~~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
.....+++.+.+.++|+|.+.+..+.+.
T Consensus 265 ~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 265 AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 2356788888888999998887776553
No 89
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.033 Score=42.98 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=52.1
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------ec-----
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-------DV----- 72 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-------Dv----- 72 (140)
++|++||. ++.+...++|++.|+. . ....+.. +|.... ..+||+||.- |-
T Consensus 135 ~~V~a~Dis~~Al~~A~~Na~~~~l-~----------~~~~~~~-dlf~~~-----~~~fDlIVsNPPYip~~~~~~~~~ 197 (280)
T COG2890 135 AEVIAVDISPDALALARENAERNGL-V----------RVLVVQS-DLFEPL-----RGKFDLIVSNPPYIPAEDPELLPE 197 (280)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCC-c----------cEEEEee-eccccc-----CCceeEEEeCCCCCCCcccccChh
Confidence 49999998 8999999999999984 1 2344555 998663 2377877752 11
Q ss_pred --ccCc-----------cchHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462 73 --VYAE-----------HLLEPLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 73 --iY~~-----------~~~~~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
-|++ +.+..++.-+...++|++.+++-...-.
T Consensus 198 ~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 198 VVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred hhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence 1222 1233455555556678777766555333
No 90
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.49 E-value=0.042 Score=40.18 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=52.8
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
.+|+.+|. ++.+...+.+.. .++.+...+..+.+ .....||+|+++.++..-.....++.
T Consensus 59 ~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~~---~~~~~fD~vi~~~~l~~~~~~~~~l~ 119 (240)
T TIGR02072 59 AEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKLP---LEDSSFDLIVSNLALQWCDDLSQALS 119 (240)
T ss_pred CcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhCC---CCCCceeEEEEhhhhhhccCHHHHHH
Confidence 36899997 666666655432 12333334443321 22467999999999988777788899
Q ss_pred HHHHhcCCCeEEEEEE
Q 032462 85 TIFALSGPKTTILLGY 100 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~ 100 (140)
.+.++++|+|.++++.
T Consensus 120 ~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 120 ELARVLKPGGLLAFST 135 (240)
T ss_pred HHHHHcCCCcEEEEEe
Confidence 9999999999998764
No 91
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.45 E-value=0.33 Score=36.78 Aligned_cols=106 Identities=21% Similarity=0.254 Sum_probs=59.6
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL 82 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L 82 (140)
+.++|++-|. +-+++.+++..+..+. ++++..+|-.++-+ +....+||+++ +|--|-.+-+..+
T Consensus 66 ~~~~I~VvDiDeRll~fI~~~a~~~gl-------------~i~~~~~DlR~~LP-~~~~~~fD~f~-TDPPyT~~G~~LF 130 (243)
T PF01861_consen 66 LPKRITVVDIDERLLDFINRVAEEEGL-------------PIEAVHYDLRDPLP-EELRGKFDVFF-TDPPYTPEGLKLF 130 (243)
T ss_dssp --SEEEEE-S-HHHHHHHHHHHHHHT---------------EEEE---TTS----TTTSS-BSEEE-E---SSHHHHHHH
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHcCC-------------ceEEEEecccccCC-HHHhcCCCEEE-eCCCCCHHHHHHH
Confidence 3469999999 5599999999888764 37888888877632 23568999876 7999988766655
Q ss_pred H-HHHHHhcCCCeEEEEEEEecChh--HHHHHHHHH-HhcCeEEee
Q 032462 83 L-QTIFALSGPKTTILLGYEIRSTS--VHEQMLQMW-KSNFNVKLV 124 (140)
Q Consensus 83 ~-~tl~~ll~~~~~~~~~~~~R~~~--~~~~F~~~~-~~~f~v~~v 124 (140)
+ +.+..|-++++.+|+++..+... .-..+-+.+ +.||.++.|
T Consensus 131 lsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 131 LSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp HHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEE
T ss_pred HHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHH
Confidence 4 45555656777899999988642 112222333 568988765
No 92
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=95.40 E-value=0.034 Score=42.41 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhc--ccc--------cCCCC-----CCCCCceEEEEeecCCCccccccCCCccEEE
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTS--RIS--------QMNPG-----SDLLGSIQAVELDWGNEDHIKAVAPPFDYII 68 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~--~~~--------~~~~~-----~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Il 68 (140)
+.+|+.||. +.+|...++++-.... .++ ....+ ..-...|.+...|=.+.+. ...+||+|+
T Consensus 132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~---~~~~fD~I~ 208 (264)
T smart00138 132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP---PLGDFDLIF 208 (264)
T ss_pred CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC---ccCCCCEEE
Confidence 468999998 7899988876521100 000 00000 0011345555555444321 246899999
Q ss_pred Eeecc-cCc-cchHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462 69 GTDVV-YAE-HLLEPLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 69 asDvi-Y~~-~~~~~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
+..++ |.+ .....+++.+...++|+|.++++....-
T Consensus 209 crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 209 CRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred echhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 99885 433 4567789999999999999999876543
No 93
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.40 E-value=0.12 Score=41.34 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=63.0
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccc------------cCCCccEE
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA------------VAPPFDYI 67 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~------------~~~~~D~I 67 (140)
|+...+|+..|. +..+..+++|+..|+. .++++..-|..+.-. ... ...+||+|
T Consensus 225 a~~~~~v~~vE~~~~ai~~a~~N~~~~~~------------~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v 292 (362)
T PRK05031 225 ARNFRRVLATEISKPSVAAAQYNIAANGI------------DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTI 292 (362)
T ss_pred HhhCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEE
Confidence 333348999998 8899999999999974 245555555433210 000 02258887
Q ss_pred EEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEee
Q 032462 68 IGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV 124 (140)
Q Consensus 68 lasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v 124 (140)
+. |-=| ..+.+.++..|.. +++.+|++... .+..+=+..+.+||.+++|
T Consensus 293 ~l-DPPR-~G~~~~~l~~l~~---~~~ivyvSC~p---~tlarDl~~L~~gY~l~~v 341 (362)
T PRK05031 293 FV-DPPR-AGLDDETLKLVQA---YERILYISCNP---ETLCENLETLSQTHKVERF 341 (362)
T ss_pred EE-CCCC-CCCcHHHHHHHHc---cCCEEEEEeCH---HHHHHHHHHHcCCcEEEEE
Confidence 76 5555 3455566665544 78889998775 3333323334348998876
No 94
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.31 E-value=0.31 Score=38.72 Aligned_cols=79 Identities=13% Similarity=0.057 Sum_probs=55.1
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-----ccch
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-----EHLL 79 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-----~~~~ 79 (140)
++|+++|. +..+...+.|++.|... . ++ .|++... ....+||+||..=.... ....
T Consensus 221 ~~v~~vDis~~Al~~A~~nl~~n~l~-----------~--~~---~~~D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~ 282 (342)
T PRK09489 221 IRLTLSDVSAAALESSRATLAANGLE-----------G--EV---FASNVFS--DIKGRFDMIISNPPFHDGIQTSLDAA 282 (342)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCC-----------C--EE---EEccccc--ccCCCccEEEECCCccCCccccHHHH
Confidence 48999998 77999999999998641 1 22 2332211 12468999998643322 2456
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEe
Q 032462 80 EPLLQTIFALSGPKTTILLGYEI 102 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~ 102 (140)
+.+++...+.++|+|.+++....
T Consensus 283 ~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 283 QTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred HHHHHHHHHhcCcCCEEEEEEeC
Confidence 78888888999999999876553
No 95
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=95.26 E-value=0.17 Score=36.95 Aligned_cols=79 Identities=14% Similarity=0.046 Sum_probs=52.0
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE 80 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~ 80 (140)
|+++.+|+..|. ++.+...++|+..+.. .++.+..-+..+. .+ ...+||+|+..-. ..
T Consensus 97 a~~~~~v~~vd~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~--~~-~~~~fD~I~~~~~------~~ 155 (212)
T PRK00312 97 AHLVRRVFSVERIKTLQWEAKRRLKQLGL------------HNVSVRHGDGWKG--WP-AYAPFDRILVTAA------AP 155 (212)
T ss_pred HHHhCEEEEEeCCHHHHHHHHHHHHHCCC------------CceEEEECCcccC--CC-cCCCcCEEEEccC------ch
Confidence 445568999997 7889999999987643 2355554443222 11 1367999887432 23
Q ss_pred HHHHHHHHhcCCCeEEEEEEE
Q 032462 81 PLLQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 81 ~L~~tl~~ll~~~~~~~~~~~ 101 (140)
.+...+...++|+|.+++...
T Consensus 156 ~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 156 EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hhhHHHHHhcCCCcEEEEEEc
Confidence 445566778899999887765
No 96
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.26 E-value=0.09 Score=38.61 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=49.5
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHHH
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQT 85 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~t 85 (140)
+|+..|. ++++...++|++.++. .++++..-|..+.. ....+||+|+.+-.. ..+...
T Consensus 104 ~V~~vD~~~~~~~~A~~~~~~~g~------------~~v~~~~~d~~~~~---~~~~~fD~Ii~~~~~------~~~~~~ 162 (215)
T TIGR00080 104 LVVSIERIPELAEKAERRLRKLGL------------DNVIVIVGDGTQGW---EPLAPYDRIYVTAAG------PKIPEA 162 (215)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCC------------CCeEEEECCcccCC---cccCCCCEEEEcCCc------ccccHH
Confidence 5999997 8899999999988753 34555554443321 113589999865332 233455
Q ss_pred HHHhcCCCeEEEEEEE
Q 032462 86 IFALSGPKTTILLGYE 101 (140)
Q Consensus 86 l~~ll~~~~~~~~~~~ 101 (140)
+...++|+|++++...
T Consensus 163 ~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 163 LIDQLKEGGILVMPVG 178 (215)
T ss_pred HHHhcCcCcEEEEEEc
Confidence 6677899999877654
No 97
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.23 E-value=0.16 Score=39.57 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=63.0
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
||..|++|+..|. +..+...++|++.|+. .++++..-|-.+.. ......||+|+. |-=+. ...
T Consensus 191 la~~~~~V~gvD~s~~av~~A~~n~~~~~l------------~~v~~~~~D~~~~~--~~~~~~~D~Vv~-dPPr~-G~~ 254 (315)
T PRK03522 191 CATPGMQLTGIEISAEAIACAKQSAAELGL------------TNVQFQALDSTQFA--TAQGEVPDLVLV-NPPRR-GIG 254 (315)
T ss_pred HHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEcCHHHHH--HhcCCCCeEEEE-CCCCC-Ccc
Confidence 4567889999998 8899999999999864 24555544432211 111246898774 42221 234
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeec
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP 125 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~ 125 (140)
..+++.|.. ++|+..+|++....... +=++.+ .+|+++++-
T Consensus 255 ~~~~~~l~~-~~~~~ivyvsc~p~t~~---rd~~~l-~~y~~~~~~ 295 (315)
T PRK03522 255 KELCDYLSQ-MAPRFILYSSCNAQTMA---KDLAHL-PGYRIERVQ 295 (315)
T ss_pred HHHHHHHHH-cCCCeEEEEECCcccch---hHHhhc-cCcEEEEEE
Confidence 455555544 45788888887654421 112223 588887763
No 98
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.22 E-value=0.1 Score=42.03 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=50.3
Q ss_pred CCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHH
Q 032462 4 LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP 81 (140)
Q Consensus 4 lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~ 81 (140)
.|+ +|++-|. ++.++.+++|++.|+.. .+.+..-|.... ... ..+||+|+. |- | ....+
T Consensus 79 ~~~~~V~a~Din~~Av~~a~~N~~~N~~~------------~~~v~~~Da~~~--l~~-~~~fD~V~l-DP-~--Gs~~~ 139 (382)
T PRK04338 79 TGVEKVTLNDINPDAVELIKKNLELNGLE------------NEKVFNKDANAL--LHE-ERKFDVVDI-DP-F--GSPAP 139 (382)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHhCCC------------ceEEEhhhHHHH--Hhh-cCCCCEEEE-CC-C--CCcHH
Confidence 354 8999998 88999999999999752 222333332111 011 356999887 76 4 34456
Q ss_pred HHHH-HHHhcCCCeEEEEEE
Q 032462 82 LLQT-IFALSGPKTTILLGY 100 (140)
Q Consensus 82 L~~t-l~~ll~~~~~~~~~~ 100 (140)
++.. +.. +++++.++++.
T Consensus 140 ~l~~al~~-~~~~gilyvSA 158 (382)
T PRK04338 140 FLDSAIRS-VKRGGLLCVTA 158 (382)
T ss_pred HHHHHHHH-hcCCCEEEEEe
Confidence 6666 444 56888888883
No 99
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.22 E-value=0.39 Score=39.30 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=60.1
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE------e-------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG------T------- 70 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila------s------- 70 (140)
+++|+..|. +..+..+++|++.++. .++++..-|..+.. ....||.|+. +
T Consensus 275 ~~~V~avD~s~~~l~~~~~~~~~~g~------------~~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p 338 (445)
T PRK14904 275 RGQITAVDRYPQKLEKIRSHASALGI------------TIIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRA 338 (445)
T ss_pred CcEEEEEECCHHHHHHHHHHHHHhCC------------CeEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCc
Confidence 358999998 8899999999988753 24555554543321 1347999883 1
Q ss_pred ecccCc--cc-------hHHHHHHHHHhcCCCeEEEEEEEecC----hhHHHHHHHHHHhcCeEEe
Q 032462 71 DVVYAE--HL-------LEPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQMWKSNFNVKL 123 (140)
Q Consensus 71 DviY~~--~~-------~~~L~~tl~~ll~~~~~~~~~~~~R~----~~~~~~F~~~~~~~f~v~~ 123 (140)
|+-|.. +. ...++.....+++|+|.++.+.-.=. ..+.+.|++.- .+|.+..
T Consensus 339 ~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~-~~~~~~~ 403 (445)
T PRK14904 339 ELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH-PEFSAEP 403 (445)
T ss_pred chhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC-CCCEEec
Confidence 122221 11 22467777777889988876553322 22345666521 1455443
No 100
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=95.16 E-value=0.37 Score=36.10 Aligned_cols=107 Identities=9% Similarity=0.044 Sum_probs=67.2
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccc--cCCCccEEEEeecccCccchHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--VAPPFDYIIGTDVVYAEHLLEP 81 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~--~~~~~D~IlasDviY~~~~~~~ 81 (140)
++|+..|. ++.+...++|++.|+. ..++++..-+..+.-. ... ...+||+|+. |.- +.....
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl-----------~~~i~~~~gda~~~L~~l~~~~~~~~fD~Vfi-Da~--k~~y~~ 159 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGV-----------DHKINFIQSDALSALDQLLNNDPKPEFDFAFV-DAD--KPNYVH 159 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEccHHHHHHHHHhCCCCCCCCEEEE-CCC--HHHHHH
Confidence 49999998 7899999999999875 2456666555543211 000 1358998865 332 244456
Q ss_pred HHHHHHHhcCCCeEEEEEEEecC-----------------hhHHHHHHHHHH--hcCeEEeecC
Q 032462 82 LLQTIFALSGPKTTILLGYEIRS-----------------TSVHEQMLQMWK--SNFNVKLVPK 126 (140)
Q Consensus 82 L~~tl~~ll~~~~~~~~~~~~R~-----------------~~~~~~F~~~~~--~~f~v~~v~~ 126 (140)
++..+..+++|+|.+++-..... .....+|.+.+. ..|....+|.
T Consensus 160 ~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~ 223 (234)
T PLN02781 160 FHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISI 223 (234)
T ss_pred HHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEe
Confidence 77777788899998876332211 012457777663 3677666664
No 101
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.14 E-value=0.071 Score=39.21 Aligned_cols=73 Identities=18% Similarity=0.108 Sum_probs=46.5
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL 82 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L 82 (140)
.+++|++-|. |+.+..|++|+++|+. .+.+.+...|..+... ...+|.||.-- +.....+
T Consensus 124 ~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----------~~~i~~~~~D~~~~~~----~~~~drvim~l----p~~~~~f 184 (200)
T PF02475_consen 124 KAKRVYAVDLNPDAVEYLKENIRLNKV-----------ENRIEVINGDAREFLP----EGKFDRVIMNL----PESSLEF 184 (200)
T ss_dssp -SSEEEEEES-HHHHHHHHHHHHHTT------------TTTEEEEES-GGG-------TT-EEEEEE------TSSGGGG
T ss_pred CccEEEEecCCHHHHHHHHHHHHHcCC-----------CCeEEEEcCCHHHhcC----ccccCEEEECC----hHHHHHH
Confidence 4568999998 8999999999999975 3567777777654421 57899888743 3333345
Q ss_pred HHHHHHhcCCCeE
Q 032462 83 LQTIFALSGPKTT 95 (140)
Q Consensus 83 ~~tl~~ll~~~~~ 95 (140)
+.....+++++|.
T Consensus 185 l~~~~~~~~~~g~ 197 (200)
T PF02475_consen 185 LDAALSLLKEGGI 197 (200)
T ss_dssp HHHHHHHEEEEEE
T ss_pred HHHHHHHhcCCcE
Confidence 5555556655544
No 102
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.01 E-value=0.067 Score=38.70 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=57.8
Q ss_pred CCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCccc-h
Q 032462 4 LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHL-L 79 (140)
Q Consensus 4 lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~~-~ 79 (140)
.|| +|++-|. +..+..+++|++.-+.. ..+++..-|.-..-. ......+||+| -.|-=|.... .
T Consensus 63 RGA~~v~fVE~~~~a~~~i~~N~~~l~~~-----------~~~~v~~~d~~~~l~~~~~~~~~fDiI-flDPPY~~~~~~ 130 (183)
T PF03602_consen 63 RGAKSVVFVEKNRKAIKIIKKNLEKLGLE-----------DKIRVIKGDAFKFLLKLAKKGEKFDII-FLDPPYAKGLYY 130 (183)
T ss_dssp TT-SEEEEEES-HHHHHHHHHHHHHHT-G-----------GGEEEEESSHHHHHHHHHHCTS-EEEE-EE--STTSCHHH
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHhCCC-----------cceeeeccCHHHHHHhhcccCCCceEE-EECCCcccchHH
Confidence 688 9999998 78999999999976542 233433333221110 11135789987 5688888887 4
Q ss_pred HHHHHHHH--HhcCCCeEEEEEEEecC
Q 032462 80 EPLLQTIF--ALSGPKTTILLGYEIRS 104 (140)
Q Consensus 80 ~~L~~tl~--~ll~~~~~~~~~~~~R~ 104 (140)
+.++..|. .++++++.+++-+..+.
T Consensus 131 ~~~l~~l~~~~~l~~~~~ii~E~~~~~ 157 (183)
T PF03602_consen 131 EELLELLAENNLLNEDGLIIIEHSKKE 157 (183)
T ss_dssp HHHHHHHHHTTSEEEEEEEEEEEETTS
T ss_pred HHHHHHHHHCCCCCCCEEEEEEecCCC
Confidence 88888887 56788888888777663
No 103
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.98 E-value=0.42 Score=39.23 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=69.6
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-- 77 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-- 77 (140)
||+.+.+|+.++. ++.+...++|++.|+. .++.+...+=.+..........+|.||. +|-
T Consensus 311 lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i------------~N~~f~~~~ae~~~~~~~~~~~~d~Vvv-----DPPR~ 373 (432)
T COG2265 311 LAKRVKKVHGVEISPEAVEAAQENAAANGI------------DNVEFIAGDAEEFTPAWWEGYKPDVVVV-----DPPRA 373 (432)
T ss_pred hcccCCEEEEEecCHHHHHHHHHHHHHcCC------------CcEEEEeCCHHHHhhhccccCCCCEEEE-----CCCCC
Confidence 5667779999998 8899999999999986 2355554332221110011346787763 442
Q ss_pred -chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeec
Q 032462 78 -LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP 125 (140)
Q Consensus 78 -~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~ 125 (140)
+-+.++++|.++. |...+|+++- +.|..+.+..+ +.|+.++++-
T Consensus 374 G~~~~~lk~l~~~~-p~~IvYVSCN---P~TlaRDl~~L~~~gy~i~~v~ 419 (432)
T COG2265 374 GADREVLKQLAKLK-PKRIVYVSCN---PATLARDLAILASTGYEIERVQ 419 (432)
T ss_pred CCCHHHHHHHHhcC-CCcEEEEeCC---HHHHHHHHHHHHhCCeEEEEEE
Confidence 4457777776654 6678888875 66788888887 5688777763
No 104
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.85 E-value=0.41 Score=34.91 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=50.7
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL 83 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~ 83 (140)
+++|+..|. ++.+...++|+..++. .+++++..-|-.+.. + ...+||.|+..-.+. .+.
T Consensus 97 ~g~V~~iD~~~~~~~~a~~~l~~~~~-----------~~~v~~~~~d~~~~~--~-~~~~fD~Ii~~~~~~------~~~ 156 (205)
T PRK13944 97 RGKVYTVEIVKELAIYAAQNIERLGY-----------WGVVEVYHGDGKRGL--E-KHAPFDAIIVTAAAS------TIP 156 (205)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEECCcccCC--c-cCCCccEEEEccCcc------hhh
Confidence 359999998 7889999999987753 134555444432211 1 135899998775542 233
Q ss_pred HHHHHhcCCCeEEEEEEE
Q 032462 84 QTIFALSGPKTTILLGYE 101 (140)
Q Consensus 84 ~tl~~ll~~~~~~~~~~~ 101 (140)
..+.+.++|+|.+++...
T Consensus 157 ~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 157 SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred HHHHHhcCcCcEEEEEEc
Confidence 456667889999877654
No 105
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=94.82 E-value=0.43 Score=34.46 Aligned_cols=104 Identities=9% Similarity=-0.025 Sum_probs=65.2
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe--ecccCccc---
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT--DVVYAEHL--- 78 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas--DviY~~~~--- 78 (140)
+++|+..|. ++.+..+++|+..++. .++++..-+..+..........+|.|+.. |.-+....
T Consensus 40 ~~~v~gvD~~~~~l~~a~~~~~~~~l------------~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~ 107 (194)
T TIGR00091 40 DKNFLGIEIHTPIVLAANNKANKLGL------------KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKR 107 (194)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHhCC------------CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCcccc
Confidence 458999998 7899999999887643 35555555543221100112368877653 33332211
Q ss_pred ---hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHh--cCeEE
Q 032462 79 ---LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS--NFNVK 122 (140)
Q Consensus 79 ---~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~--~f~v~ 122 (140)
.+.+++.+.++++|+|.+++....+.. ...+++.+++ +|+..
T Consensus 108 r~~~~~~l~~~~r~LkpgG~l~~~td~~~~--~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 108 RITQPHFLKEYANVLKKGGVIHFKTDNEPL--FEDMLKVLSENDLFENT 154 (194)
T ss_pred ccCCHHHHHHHHHHhCCCCEEEEEeCCHHH--HHHHHHHHHhCCCeEec
Confidence 267899999999999999988765542 4455666643 36544
No 106
>PRK04266 fibrillarin; Provisional
Probab=94.42 E-value=1.5 Score=32.68 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=55.8
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
.+|+.-|. +..+..+.++++.. .++....-|=.++.........||+|+ +|.- ++.....++.
T Consensus 97 g~V~avD~~~~ml~~l~~~a~~~--------------~nv~~i~~D~~~~~~~~~l~~~~D~i~-~d~~-~p~~~~~~L~ 160 (226)
T PRK04266 97 GVVYAVEFAPRPMRELLEVAEER--------------KNIIPILADARKPERYAHVVEKVDVIY-QDVA-QPNQAEIAID 160 (226)
T ss_pred CeEEEEECCHHHHHHHHHHhhhc--------------CCcEEEECCCCCcchhhhccccCCEEE-ECCC-ChhHHHHHHH
Confidence 48999997 77888777776531 112222111111100011234589887 3422 1222334677
Q ss_pred HHHHhcCCCeEEEEEEEecC-----hh--HHHHHHHHH-HhcCeEEee
Q 032462 85 TIFALSGPKTTILLGYEIRS-----TS--VHEQMLQMW-KSNFNVKLV 124 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~~~R~-----~~--~~~~F~~~~-~~~f~v~~v 124 (140)
.+.++++|+|.++++-..|. .. ..+...+.+ +.||++.++
T Consensus 161 ~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 161 NAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEV 208 (226)
T ss_pred HHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 88889999999998644333 11 122334455 459997654
No 107
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.38 E-value=0.52 Score=35.35 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=54.4
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
++|+..|. +++|...++.+..... .+|+... ++.+..+.....||.|..+=.+-+-.-.+..++
T Consensus 73 ~~v~~vD~s~~ML~~a~~k~~~~~~------------~~i~~v~---~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~ 137 (233)
T PF01209_consen 73 GKVVGVDISPGMLEVARKKLKREGL------------QNIEFVQ---GDAEDLPFPDNSFDAVTCSFGLRNFPDRERALR 137 (233)
T ss_dssp -EEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE----BTTB--S-TT-EEEEEEES-GGG-SSHHHHHH
T ss_pred cEEEEecCCHHHHHHHHHHHHhhCC------------CCeeEEE---cCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHH
Confidence 58999998 8899999988886543 2444444 333334444689999999888776555666777
Q ss_pred HHHHhcCCCeEEEEEEEecC
Q 032462 85 TIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~~~R~ 104 (140)
-+.+.++|+|.+.+.--.+.
T Consensus 138 E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 138 EMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp HHHHHEEEEEEEEEEEEEB-
T ss_pred HHHHHcCCCeEEEEeeccCC
Confidence 77788899998876544443
No 108
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.29 E-value=0.59 Score=37.20 Aligned_cols=56 Identities=23% Similarity=0.206 Sum_probs=38.8
Q ss_pred CccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe
Q 032462 1 MALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas 70 (140)
+|+.|+ +|++.|. |+.+..|++|+++|+.. +.+....-|=.+. ......+|-|+.-
T Consensus 206 ~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~-----------~~v~~i~gD~rev---~~~~~~aDrIim~ 263 (341)
T COG2520 206 IAKKGRPKVYAIDINPDAVEYLKENIRLNKVE-----------GRVEPILGDAREV---APELGVADRIIMG 263 (341)
T ss_pred hhhcCCceEEEEecCHHHHHHHHHHHHhcCcc-----------ceeeEEeccHHHh---hhccccCCEEEeC
Confidence 478898 5999998 99999999999999863 3344444333222 1112678887764
No 109
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=94.24 E-value=0.4 Score=37.61 Aligned_cols=84 Identities=18% Similarity=0.113 Sum_probs=52.4
Q ss_pred CccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 1 MALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 1 lA~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
|+..|| .|+..|... +-.++-.+-..... ....+...++-..+- +. ...||+|++.=|+|.....
T Consensus 133 M~~~GA~~ViGiDP~~-lf~~QF~~i~~~lg---------~~~~~~~lplgvE~L---p~-~~~FDtVF~MGVLYHrr~P 198 (315)
T PF08003_consen 133 MLGRGAKSVIGIDPSP-LFYLQFEAIKHFLG---------QDPPVFELPLGVEDL---PN-LGAFDTVFSMGVLYHRRSP 198 (315)
T ss_pred HhhcCCCEEEEECCCh-HHHHHHHHHHHHhC---------CCccEEEcCcchhhc---cc-cCCcCEEEEeeehhccCCH
Confidence 456788 799999632 22333333332221 112334444433332 33 5689999999999999888
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 032462 80 EPLLQTIFALSGPKTTILL 98 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~ 98 (140)
-..+..++..+.++|.+++
T Consensus 199 l~~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 199 LDHLKQLKDSLRPGGELVL 217 (315)
T ss_pred HHHHHHHHHhhCCCCEEEE
Confidence 8888888888877666653
No 110
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=94.12 E-value=0.46 Score=35.60 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=50.3
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEE-EEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL 82 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~-~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L 82 (140)
|++|+..|. +.++...++++. | ..+.. -...|. ...+||+|+++.++..-.-...+
T Consensus 55 ~~~v~gvD~s~~~i~~a~~~~~-~--------------~~~~~~d~~~~~-------~~~~fD~v~~~~~l~~~~d~~~~ 112 (258)
T PRK01683 55 AARITGIDSSPAMLAEARSRLP-D--------------CQFVEADIASWQ-------PPQALDLIFANASLQWLPDHLEL 112 (258)
T ss_pred CCEEEEEECCHHHHHHHHHhCC-C--------------CeEEECchhccC-------CCCCccEEEEccChhhCCCHHHH
Confidence 569999998 778888877641 1 01110 001231 12489999999988655456678
Q ss_pred HHHHHHhcCCCeEEEEEE
Q 032462 83 LQTIFALSGPKTTILLGY 100 (140)
Q Consensus 83 ~~tl~~ll~~~~~~~~~~ 100 (140)
++.+...++|+|.+++..
T Consensus 113 l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 113 FPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred HHHHHHhcCCCcEEEEEC
Confidence 888888999999988754
No 111
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=94.10 E-value=0.74 Score=37.66 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE----e---------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG----T--------- 70 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila----s--------- 70 (140)
+++|++.|. +..+..+++|++..+. .++++..-|+.+... .....||.|+. |
T Consensus 262 ~g~V~a~Dis~~rl~~~~~n~~r~g~------------~~v~~~~~Da~~l~~--~~~~~fD~Vl~DaPCsg~G~~~~~p 327 (431)
T PRK14903 262 QGKILAVDISREKIQLVEKHAKRLKL------------SSIEIKIADAERLTE--YVQDTFDRILVDAPCTSLGTARNHP 327 (431)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhhhhh--hhhccCCEEEECCCCCCCccccCCh
Confidence 469999998 8899999999987653 246666666554321 12457999885 1
Q ss_pred ecccCc--c-------chHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462 71 DVVYAE--H-------LLEPLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 71 DviY~~--~-------~~~~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
|+.|.. + .-..++.....+++|+|.++.+.-.-.
T Consensus 328 ~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 328 EVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 111111 0 123345556667789888766555444
No 112
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=94.02 E-value=0.24 Score=37.26 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=49.1
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL 83 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~ 83 (140)
|++|+..|. +.++...+++ | +.+.. ++-.... ...+||+|+++.++..-...+.++
T Consensus 53 ~~~v~gvD~s~~~~~~a~~~---~----------------~~~~~---~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l 109 (255)
T PRK14103 53 GAVIEALDSSPEMVAAARER---G----------------VDART---GDVRDWK-PKPDTDVVVSNAALQWVPEHADLL 109 (255)
T ss_pred CCEEEEEECCHHHHHHHHhc---C----------------CcEEE---cChhhCC-CCCCceEEEEehhhhhCCCHHHHH
Confidence 679999998 7777776542 1 11111 1111111 135899999999987755567788
Q ss_pred HHHHHhcCCCeEEEEE
Q 032462 84 QTIFALSGPKTTILLG 99 (140)
Q Consensus 84 ~tl~~ll~~~~~~~~~ 99 (140)
+-+.+.++|+|.+++.
T Consensus 110 ~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 110 VRWVDELAPGSWIAVQ 125 (255)
T ss_pred HHHHHhCCCCcEEEEE
Confidence 8888889999998875
No 113
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.96 E-value=0.54 Score=34.54 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=46.7
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
++|+.-|. ++++...++|++.++. .++++.. ++.........+||+|+..-.+ +.+..
T Consensus 102 ~~V~~vE~~~~~~~~a~~~l~~~g~------------~~v~~~~---gd~~~~~~~~~~fD~I~~~~~~------~~~~~ 160 (212)
T PRK13942 102 GKVVTIERIPELAEKAKKTLKKLGY------------DNVEVIV---GDGTLGYEENAPYDRIYVTAAG------PDIPK 160 (212)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEE---CCcccCCCcCCCcCEEEECCCc------ccchH
Confidence 58999997 8899999999987643 2333333 3221111124689999864322 23334
Q ss_pred HHHHhcCCCeEEEEEE
Q 032462 85 TIFALSGPKTTILLGY 100 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~ 100 (140)
.+...++|+|++++..
T Consensus 161 ~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 161 PLIEQLKDGGIMVIPV 176 (212)
T ss_pred HHHHhhCCCcEEEEEE
Confidence 5666788999987753
No 114
>PRK00811 spermidine synthase; Provisional
Probab=93.91 E-value=1 Score=34.73 Aligned_cols=105 Identities=10% Similarity=-0.006 Sum_probs=60.3
Q ss_pred CC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-----
Q 032462 5 GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----- 77 (140)
Q Consensus 5 Ga-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~----- 77 (140)
+. +|++-|. +++++..++++....... ...+++++..-|-.+- .+....+||+|+. |+ +++.
T Consensus 99 ~~~~V~~VEid~~vv~~a~~~~~~~~~~~-------~~d~rv~v~~~Da~~~--l~~~~~~yDvIi~-D~-~dp~~~~~~ 167 (283)
T PRK00811 99 SVEKITLVEIDERVVEVCRKYLPEIAGGA-------YDDPRVELVIGDGIKF--VAETENSFDVIIV-DS-TDPVGPAEG 167 (283)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhHHhcccc-------ccCCceEEEECchHHH--HhhCCCcccEEEE-CC-CCCCCchhh
Confidence 54 8999998 789999999876432111 0134555443332111 1123568999995 54 2221
Q ss_pred -chHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHHhcCe
Q 032462 78 -LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN 120 (140)
Q Consensus 78 -~~~~L~~tl~~ll~~~~~~~~~~~~--R~~~~~~~F~~~~~~~f~ 120 (140)
.-..+++.+++.|+|+|.+.+-... ..........+.+++-|.
T Consensus 168 l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (283)
T PRK00811 168 LFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP 213 (283)
T ss_pred hhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCC
Confidence 1256677888889999987763221 222334444555555565
No 115
>PLN03075 nicotianamine synthase; Provisional
Probab=93.88 E-value=0.83 Score=35.67 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=63.9
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-ccchHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EHLLEPL 82 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-~~~~~~L 82 (140)
+++++-.|. ++.+...|++++.... -...+++...|-.+... ...+||+|...=++|. .+.....
T Consensus 149 ~~~~~giD~d~~ai~~Ar~~~~~~~g----------L~~rV~F~~~Da~~~~~---~l~~FDlVF~~ALi~~dk~~k~~v 215 (296)
T PLN03075 149 TTSFHNFDIDPSANDVARRLVSSDPD----------LSKRMFFHTADVMDVTE---SLKEYDVVFLAALVGMDKEEKVKV 215 (296)
T ss_pred CCEEEEEeCCHHHHHHHHHHhhhccC----------ccCCcEEEECchhhccc---ccCCcCEEEEecccccccccHHHH
Confidence 458999998 7899999988865221 13568888777765321 1468999999966787 4788889
Q ss_pred HHHHHHhcCCCeEEEEEEE
Q 032462 83 LQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 83 ~~tl~~ll~~~~~~~~~~~ 101 (140)
++-+...++|+|.+++...
T Consensus 216 L~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 216 IEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred HHHHHHhcCCCcEEEEecc
Confidence 9999999999999998763
No 116
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.81 E-value=0.34 Score=39.77 Aligned_cols=83 Identities=17% Similarity=0.106 Sum_probs=54.4
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cc
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HL 78 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~ 78 (140)
|..+.+|+..|. +..+.. |...|.. ..++.+...+..+.. .+....+||+|++..+++.= ..
T Consensus 56 a~~~~~v~giD~s~~~l~~---a~~~~~~-----------~~~i~~~~~d~~~~~-~~~~~~~fD~I~~~~~l~~l~~~~ 120 (475)
T PLN02336 56 AKKAGQVIALDFIESVIKK---NESINGH-----------YKNVKFMCADVTSPD-LNISDGSVDLIFSNWLLMYLSDKE 120 (475)
T ss_pred HhhCCEEEEEeCCHHHHHH---HHHHhcc-----------CCceEEEEecccccc-cCCCCCCEEEEehhhhHHhCCHHH
Confidence 455679999998 666543 3333321 235566666654321 12224689999999988753 33
Q ss_pred hHHHHHHHHHhcCCCeEEEEE
Q 032462 79 LEPLLQTIFALSGPKTTILLG 99 (140)
Q Consensus 79 ~~~L~~tl~~ll~~~~~~~~~ 99 (140)
...+++-+...++|+|.+++.
T Consensus 121 ~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 121 VENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEE
Confidence 677888888889999998763
No 117
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=93.67 E-value=0.87 Score=34.71 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=58.5
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCcc-----c
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEH-----L 78 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~-----~ 78 (140)
.+|++.|. ++++...++++....... ..+++++.. ++... ......+||+||. |...... .
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~--------~~~~v~i~~---~D~~~~l~~~~~~yDvIi~-D~~~~~~~~~~l~ 164 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSY--------DDPRVDLQI---DDGFKFLADTENTFDVIIV-DSTDPVGPAETLF 164 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccc--------cCCceEEEE---CchHHHHHhCCCCccEEEE-eCCCCCCcccchh
Confidence 38999998 779999999875432211 124455544 22211 1122468999985 5542111 1
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEEecC--hhHHHHHHHHHHhcCe
Q 032462 79 LEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKSNFN 120 (140)
Q Consensus 79 ~~~L~~tl~~ll~~~~~~~~~~~~R~--~~~~~~F~~~~~~~f~ 120 (140)
...+++.++++++|+|.+++....-. ........+.+++.|.
T Consensus 165 ~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~ 208 (270)
T TIGR00417 165 TKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFP 208 (270)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCC
Confidence 35667788888999999887533211 2223333444555555
No 118
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=93.62 E-value=0.33 Score=36.12 Aligned_cols=76 Identities=16% Similarity=0.098 Sum_probs=59.4
Q ss_pred CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--ccchHHH
Q 032462 5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPL 82 (140)
Q Consensus 5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~~~~~L 82 (140)
+.++++=|+|++++..+. . .+|+..+-|.-++ .| . +|+|+.+-|+.+ ++....+
T Consensus 124 ~l~~~v~Dlp~v~~~~~~------~------------~rv~~~~gd~f~~--~P---~-~D~~~l~~vLh~~~d~~~~~i 179 (241)
T PF00891_consen 124 NLRATVFDLPEVIEQAKE------A------------DRVEFVPGDFFDP--LP---V-ADVYLLRHVLHDWSDEDCVKI 179 (241)
T ss_dssp TSEEEEEE-HHHHCCHHH------T------------TTEEEEES-TTTC--CS---S-ESEEEEESSGGGS-HHHHHHH
T ss_pred CCcceeeccHhhhhcccc------c------------cccccccccHHhh--hc---c-ccceeeehhhhhcchHHHHHH
Confidence 568999999999988877 1 6789999998833 22 2 999999999966 4677888
Q ss_pred HHHHHHhcCCC--eEEEEEEEecC
Q 032462 83 LQTIFALSGPK--TTILLGYEIRS 104 (140)
Q Consensus 83 ~~tl~~ll~~~--~~~~~~~~~R~ 104 (140)
++-+...+.|+ |+++|.-....
T Consensus 180 L~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 180 LRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp HHHHHHHSEECTTEEEEEEEEEEC
T ss_pred HHHHHHHhCCCCCCeEEEEeeccC
Confidence 88888889977 99998877743
No 119
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=93.48 E-value=1 Score=31.57 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=49.6
Q ss_pred ecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHHHHHHh
Q 032462 11 TDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL 89 (140)
Q Consensus 11 TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~tl~~l 89 (140)
.|. ++++...+++....... ...++++.. ++....+.....||+|+.+-++-+-.-....++-+.+.
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~---------~~~~i~~~~---~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rv 70 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARS---------CYKCIEWIE---GDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRV 70 (160)
T ss_pred EcCCHHHHHHHHHhhhccccc---------CCCceEEEE---echhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHH
Confidence 465 67788776655432110 012344333 33333444456899999998876655566777888889
Q ss_pred cCCCeEEEEEEE
Q 032462 90 SGPKTTILLGYE 101 (140)
Q Consensus 90 l~~~~~~~~~~~ 101 (140)
++|+|.+++..-
T Consensus 71 LkpGG~l~i~d~ 82 (160)
T PLN02232 71 LKPGSRVSILDF 82 (160)
T ss_pred cCcCeEEEEEEC
Confidence 999999876643
No 120
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=93.27 E-value=0.7 Score=35.85 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=63.7
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--ccchHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEP 81 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~~~~~ 81 (140)
|++|+-.++ ++-....++=++.-+. ..++++..-||.+..+ +||-|+..+.+=. .+..+.
T Consensus 95 ~v~V~GvTlS~~Q~~~~~~r~~~~gl-----------~~~v~v~l~d~rd~~e------~fDrIvSvgmfEhvg~~~~~~ 157 (283)
T COG2230 95 GVTVVGVTLSEEQLAYAEKRIAARGL-----------EDNVEVRLQDYRDFEE------PFDRIVSVGMFEHVGKENYDD 157 (283)
T ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCC-----------CcccEEEecccccccc------ccceeeehhhHHHhCcccHHH
Confidence 889999998 6777888776665543 3689999999987743 4999999997643 467999
Q ss_pred HHHHHHHhcCCCeEEEEEEE
Q 032462 82 LLQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 82 L~~tl~~ll~~~~~~~~~~~ 101 (140)
+++.+..++.|+|.+++-.-
T Consensus 158 ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 158 FFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred HHHHHHhhcCCCceEEEEEe
Confidence 99999999999998875333
No 121
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=93.17 E-value=0.048 Score=41.77 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=23.9
Q ss_pred CCccEEEEeecccCccchHHHHHHHHHhc
Q 032462 62 PPFDYIIGTDVVYAEHLLEPLLQTIFALS 90 (140)
Q Consensus 62 ~~~D~IlasDviY~~~~~~~L~~tl~~ll 90 (140)
..+|+|+|||++|+ ....+++.++..++
T Consensus 163 ~~~dll~~AdV~yd-~~~~~~~~~~~~lL 190 (262)
T KOG2497|consen 163 EFTDLLGGADVIYD-TELRHLLETLMTLL 190 (262)
T ss_pred chhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence 34999999999999 88888888888765
No 122
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=93.09 E-value=2 Score=34.96 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=54.9
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE------eecccC-cc
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG------TDVVYA-EH 77 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila------sDviY~-~~ 77 (140)
++|+..|. +..+..+++|++.++.. ..+....-+....... .....||.|+. +-++-. ++
T Consensus 263 ~~v~a~D~~~~~l~~~~~n~~r~g~~-----------~~v~~~~~d~~~~~~~-~~~~~fD~VllDaPcSg~G~~~~~p~ 330 (426)
T TIGR00563 263 AQVVALDIHEHRLKRVYENLKRLGLT-----------IKAETKDGDGRGPSQW-AENEQFDRILLDAPCSATGVIRRHPD 330 (426)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCC-----------eEEEEecccccccccc-ccccccCEEEEcCCCCCCcccccCcc
Confidence 69999997 88999999999987641 1222232222211100 12357998883 222221 11
Q ss_pred ---------------chHHHHHHHHHhcCCCeEEEEE-EEec---ChhHHHHHHHH
Q 032462 78 ---------------LLEPLLQTIFALSGPKTTILLG-YEIR---STSVHEQMLQM 114 (140)
Q Consensus 78 ---------------~~~~L~~tl~~ll~~~~~~~~~-~~~R---~~~~~~~F~~~ 114 (140)
.-..++.....+++|+|.++.+ ...- +..+.+.|++.
T Consensus 331 ~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 331 IKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 1245666666778898887654 3332 33445667753
No 123
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=92.77 E-value=1.3 Score=33.62 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=54.3
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE----ee--cc-----
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG----TD--VV----- 73 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila----sD--vi----- 73 (140)
..|+..|. +..+..+++|++.++. .++++..-|.... +.....||.|+. |. ++
T Consensus 97 g~v~a~D~~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~---~~~~~~fD~Vl~D~Pcsg~G~~~~~p~ 161 (264)
T TIGR00446 97 GAIVANEFSKSRTKVLIANINRCGV------------LNVAVTNFDGRVF---GAAVPKFDAILLDAPCSGEGVIRKDPS 161 (264)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEecCCHHHh---hhhccCCCEEEEcCCCCCCcccccChh
Confidence 48999997 8899999999999864 2455555443221 112345998874 21 11
Q ss_pred ----cCccc-------hHHHHHHHHHhcCCCeEEEEEEEecCh----hHHHHHHH
Q 032462 74 ----YAEHL-------LEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQ 113 (140)
Q Consensus 74 ----Y~~~~-------~~~L~~tl~~ll~~~~~~~~~~~~R~~----~~~~~F~~ 113 (140)
+.++. ...+++....+++|+|.++.+.-.-.. .+.+.|++
T Consensus 162 ~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 162 RKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLE 216 (264)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHH
Confidence 11111 233555666677898887655443333 23445554
No 124
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=92.63 E-value=0.67 Score=34.75 Aligned_cols=124 Identities=18% Similarity=0.161 Sum_probs=68.0
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhccc--cc-CCCCCCCCCceEEEEeecCCCccccccCCCccEE--EEeeccc
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI--SQ-MNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYI--IGTDVVY 74 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~--~~-~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~I--lasDviY 74 (140)
||.+|.+|+.-|+ +..+....+ .|.... .. ..........+.+..-|.-+....+....+||.| -++=|-.
T Consensus 61 LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al 137 (226)
T PRK13256 61 FLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL 137 (226)
T ss_pred HHhCCCcEEEEecCHHHHHHHHH---HcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC
Confidence 6789999999998 666665533 111100 00 0000011234555555544432111123578873 3555556
Q ss_pred CccchHHHHHHHHHhcCCCeEEE-EEEEecC--h----hH-HHHHHHHHHhcCeEEeecCC
Q 032462 75 AEHLLEPLLQTIFALSGPKTTIL-LGYEIRS--T----SV-HEQMLQMWKSNFNVKLVPKA 127 (140)
Q Consensus 75 ~~~~~~~L~~tl~~ll~~~~~~~-~~~~~R~--~----~~-~~~F~~~~~~~f~v~~v~~~ 127 (140)
.++....-++.|..+++|+|.++ +....-. . .+ .+...+..+..|.++.+...
T Consensus 138 pp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l~~~ 198 (226)
T PRK13256 138 PNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELIDSK 198 (226)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEeeec
Confidence 67788888999999999987765 4443211 1 11 23333444778888887653
No 125
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=92.60 E-value=1.1 Score=32.86 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=67.8
Q ss_pred ccCCC--EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEee---cccC
Q 032462 2 ALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD---VVYA 75 (140)
Q Consensus 2 A~lGa--~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasD---viY~ 75 (140)
|.-|. +.+=+|+ +..+.+.+.-.++++. .+.|+.+++|-.++. ....+||+|+--- -|=-
T Consensus 86 ~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----------~n~I~f~q~DI~~~~---~~~~qfdlvlDKGT~DAisL 151 (227)
T KOG1271|consen 86 AKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----------SNEIRFQQLDITDPD---FLSGQFDLVLDKGTLDAISL 151 (227)
T ss_pred HHhcCCCCccccccCHHHHHHHHHHHHhcCC-----------CcceeEEEeeccCCc---ccccceeEEeecCceeeeec
Confidence 44454 4778898 6677774444444543 355999999998773 3456777776321 1111
Q ss_pred c-c----chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeE-EeecCC
Q 032462 76 E-H----LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV-KLVPKA 127 (140)
Q Consensus 76 ~-~----~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v-~~v~~~ 127 (140)
. + -...-+.++..+++|+|.++|..-... .++..+.++ .+|++ ..||..
T Consensus 152 s~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T---~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 152 SPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT---KDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred CCCCcccceeeehhhHhhccCCCcEEEEEecCcc---HHHHHHHHhcCCeEEEEeeccc
Confidence 0 0 113357788899999999988766443 456677774 46874 456654
No 126
>PLN02672 methionine S-methyltransferase
Probab=92.57 E-value=2.2 Score=38.95 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=69.8
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCC----CCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------e--
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN----PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-------D-- 71 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~----~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-------D-- 71 (140)
++|+++|. ++.+...++|++.|...-.+.. .......++++..-||-+.. .....+||+||+. |
T Consensus 143 ~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~--~~~~~~fDlIVSNPPYI~~~e~~ 220 (1082)
T PLN02672 143 SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC--RDNNIELDRIVGCIPQILNPNPE 220 (1082)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc--cccCCceEEEEECCCcCCCcchh
Confidence 58999998 8899999999999864210000 00001246888888886542 1112368888863 1
Q ss_pred -----cc-cCc-------c----------------chHHHHHHHHHhcCCCeEEEEEEEecChhHHH-HHHHHHHhcCeE
Q 032462 72 -----VV-YAE-------H----------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHE-QMLQMWKSNFNV 121 (140)
Q Consensus 72 -----vi-Y~~-------~----------------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~-~F~~~~~~~f~v 121 (140)
+. |++ + .+..++......++|+|.+++-...+..+... +.++ +.||..
T Consensus 221 ~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~--~~gf~~ 298 (1082)
T PLN02672 221 AMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFE--RRGFRI 298 (1082)
T ss_pred hcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHH--HCCCCe
Confidence 11 221 0 12345555556788999998877777654333 3443 357876
Q ss_pred EeecCCC
Q 032462 122 KLVPKAK 128 (140)
Q Consensus 122 ~~v~~~~ 128 (140)
.++-..+
T Consensus 299 ~~~~~~~ 305 (1082)
T PLN02672 299 TKLWQTK 305 (1082)
T ss_pred eEEeeeh
Confidence 6554433
No 127
>PLN02823 spermine synthase
Probab=92.55 E-value=0.96 Score=35.90 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=59.8
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCcc-------
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEH------- 77 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~------- 77 (140)
+|++-|. +++++..+++...|.... ..+++++.. ++.-. ......+||+|+ .|+ .++.
T Consensus 129 ~v~~VEiD~~vv~lar~~~~~~~~~~--------~dprv~v~~---~Da~~~L~~~~~~yDvIi-~D~-~dp~~~~~~~~ 195 (336)
T PLN02823 129 KVVMCDIDQEVVDFCRKHLTVNREAF--------CDKRLELII---NDARAELEKRDEKFDVII-GDL-ADPVEGGPCYQ 195 (336)
T ss_pred eEEEEECCHHHHHHHHHhcccccccc--------cCCceEEEE---ChhHHHHhhCCCCccEEE-ecC-CCccccCcchh
Confidence 8999999 789999999987664322 124444443 21111 112346899999 564 3431
Q ss_pred -chHHHHH-HHHHhcCCCeEEEEEEEe----cChhHHHHHHHHHHhcCe
Q 032462 78 -LLEPLLQ-TIFALSGPKTTILLGYEI----RSTSVHEQMLQMWKSNFN 120 (140)
Q Consensus 78 -~~~~L~~-tl~~ll~~~~~~~~~~~~----R~~~~~~~F~~~~~~~f~ 120 (140)
.-..+.+ .++..|+|+|.+.+-... +........++.+++.|.
T Consensus 196 Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~ 244 (336)
T PLN02823 196 LYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK 244 (336)
T ss_pred hccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC
Confidence 1234565 778899999987653322 223334455566666665
No 128
>PTZ00146 fibrillarin; Provisional
Probab=92.55 E-value=4.1 Score=31.81 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=42.7
Q ss_pred CCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChh----HHHHHH---HHHH-hcCeE-EeecCCCCC
Q 032462 62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQML---QMWK-SNFNV-KLVPKAKES 130 (140)
Q Consensus 62 ~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~----~~~~F~---~~~~-~~f~v-~~v~~~~l~ 130 (140)
..+|+|+. |+ ..++....++..+..+|+|++.+++..+.|... ..+.|- +.++ .+|+. +.+..+..+
T Consensus 201 ~~vDvV~~-Dv-a~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~ 276 (293)
T PTZ00146 201 PMVDVIFA-DV-AQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFE 276 (293)
T ss_pred CCCCEEEE-eC-CCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCcc
Confidence 46899965 44 356666677777888999999999977766532 123343 3354 48984 444444333
No 129
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=92.54 E-value=1.2 Score=36.22 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=48.7
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEE----Ee--ec------
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYII----GT--DV------ 72 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Il----as--Dv------ 72 (140)
++|+..|. +..+..+++|++.++.. +.+..-|-.+.... ....+||.|+ ++ -+
T Consensus 269 ~~v~a~D~s~~~l~~~~~n~~~~g~~-------------~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs~~G~~~~~p~ 334 (427)
T PRK10901 269 AQVVALDIDAQRLERVRENLQRLGLK-------------ATVIVGDARDPAQW-WDGQPFDRILLDAPCSATGVIRRHPD 334 (427)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEcCcccchhh-cccCCCCEEEECCCCCcccccccCcc
Confidence 59999998 88999999999887631 23333232221110 1135799888 22 11
Q ss_pred -ccCc--c-------chHHHHHHHHHhcCCCeEEEEEE
Q 032462 73 -VYAE--H-------LLEPLLQTIFALSGPKTTILLGY 100 (140)
Q Consensus 73 -iY~~--~-------~~~~L~~tl~~ll~~~~~~~~~~ 100 (140)
-|.. + ....++....++++|+|.++++.
T Consensus 335 ~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 335 IKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1211 1 12356777777889999887654
No 130
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.38 E-value=0.26 Score=37.42 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=50.6
Q ss_pred CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEE-------------ecChhHHHHHHHH-H-HhcCeEEeec
Q 032462 61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE-------------IRSTSVHEQMLQM-W-KSNFNVKLVP 125 (140)
Q Consensus 61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~-------------~R~~~~~~~F~~~-~-~~~f~v~~v~ 125 (140)
..+||+|.++||+=.=-..++++.....+++|+|.+.++.+ .|... -+.++.. + ..||++-.+.
T Consensus 186 ~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH-~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 186 QERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAH-SESYVRALLAASGLEVIAIE 264 (287)
T ss_pred CCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhcc-chHHHHHHHHhcCceEEEee
Confidence 67999999999998888889999999999998888777665 23332 2345544 4 4699987776
Q ss_pred CCCC
Q 032462 126 KAKE 129 (140)
Q Consensus 126 ~~~l 129 (140)
...+
T Consensus 265 ~tti 268 (287)
T COG4976 265 DTTI 268 (287)
T ss_pred cccc
Confidence 5444
No 131
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=92.10 E-value=1.3 Score=35.16 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=59.4
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc----------c---ccCCCccEE
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI----------K---AVAPPFDYI 67 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~----------~---~~~~~~D~I 67 (140)
|+...+|+..|. ++.+..+++|++.|+. .++++..-|..+.... . ....+||+|
T Consensus 216 a~~~~~v~~vE~~~~av~~a~~n~~~~~~------------~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 283 (353)
T TIGR02143 216 AQNFRRVLATEIAKPSVNAAQYNIAANNI------------DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTI 283 (353)
T ss_pred HHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEE
Confidence 333458999997 8899999999999974 2355554444321110 0 001236776
Q ss_pred EEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEee
Q 032462 68 IGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV 124 (140)
Q Consensus 68 lasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v 124 (140)
+. |-= .....+.++..| .++++.+|+++.... ..+=+..+.++|.++.+
T Consensus 284 ~l-DPP-R~G~~~~~l~~l---~~~~~ivYvsC~p~t---laRDl~~L~~~Y~l~~v 332 (353)
T TIGR02143 284 FV-DPP-RAGLDPDTCKLV---QAYERILYISCNPET---LKANLEQLSETHRVERF 332 (353)
T ss_pred EE-CCC-CCCCcHHHHHHH---HcCCcEEEEEcCHHH---HHHHHHHHhcCcEEEEE
Confidence 55 333 123455555555 447899999877543 22223333345887776
No 132
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=92.08 E-value=2.6 Score=33.01 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=54.2
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-c----h
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-L----L 79 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-~----~ 79 (140)
++|+++|. .-.++..|+|+..|... +. ...+++.- .....+||.||.-=-+-... . .
T Consensus 183 ~~vtmvDvn~~Av~~ar~Nl~~N~~~-----------~~----~v~~s~~~--~~v~~kfd~IisNPPfh~G~~v~~~~~ 245 (300)
T COG2813 183 AKLTLVDVNARAVESARKNLAANGVE-----------NT----EVWASNLY--EPVEGKFDLIISNPPFHAGKAVVHSLA 245 (300)
T ss_pred CeEEEEecCHHHHHHHHHhHHHcCCC-----------cc----EEEEeccc--ccccccccEEEeCCCccCCcchhHHHH
Confidence 48999998 66899999999999862 11 22222221 12234899998755554432 2 2
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRST 105 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~ 105 (140)
..++..-...|.++|..+|... |..
T Consensus 246 ~~~i~~A~~~L~~gGeL~iVan-~~l 270 (300)
T COG2813 246 QEIIAAAARHLKPGGELWIVAN-RHL 270 (300)
T ss_pred HHHHHHHHHhhccCCEEEEEEc-CCC
Confidence 2566666777889999987766 543
No 133
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=91.83 E-value=0.33 Score=37.69 Aligned_cols=96 Identities=23% Similarity=0.349 Sum_probs=61.0
Q ss_pred CEEEEecc-hhHHHHHHHHHHH-----hhcc------ccc-CCC--C-----CCCCCceEEEEeecCCCccccccCCCcc
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEW-----NTSR------ISQ-MNP--G-----SDLLGSIQAVELDWGNEDHIKAVAPPFD 65 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~-----N~~~------~~~-~~~--~-----~~~~~~v~~~~LdWg~~~~~~~~~~~~D 65 (140)
.+|+.||. +.+|...++.+=- +.+. +.. ..+ + ..-...|....++=.+++. + ...+||
T Consensus 148 ~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~-~-~~~~fD 225 (287)
T PRK10611 148 WKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQW-A-VPGPFD 225 (287)
T ss_pred cEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCC-c-cCCCcc
Confidence 48999998 6788877765311 1000 000 000 0 0123456666666655321 1 146899
Q ss_pred EEEEeecc-c-CccchHHHHHHHHHhcCCCeEEEEEEEec
Q 032462 66 YIIGTDVV-Y-AEHLLEPLLQTIFALSGPKTTILLGYEIR 103 (140)
Q Consensus 66 ~IlasDvi-Y-~~~~~~~L~~tl~~ll~~~~~~~~~~~~R 103 (140)
+|++-.++ | +++....+++.+...++|+|.+++++...
T Consensus 226 ~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 226 AIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred eeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 99997775 3 45688999999999999999999987644
No 134
>PRK03612 spermidine synthase; Provisional
Probab=91.07 E-value=2 Score=35.99 Aligned_cols=106 Identities=10% Similarity=0.055 Sum_probs=60.6
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCcc------
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEH------ 77 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~------ 77 (140)
.+|++-|. +++++..++|...+...... -..+++++.. ++... ......+||+|+. |.-....
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~-----~~dprv~vi~---~Da~~~l~~~~~~fDvIi~-D~~~~~~~~~~~L 392 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGA-----LDDPRVTVVN---DDAFNWLRKLAEKFDVIIV-DLPDPSNPALGKL 392 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccc-----cCCCceEEEE---ChHHHHHHhCCCCCCEEEE-eCCCCCCcchhcc
Confidence 48999998 88999999975443221000 0124454432 22211 1123468999987 5432210
Q ss_pred chHHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHHh-cCe
Q 032462 78 LLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKS-NFN 120 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~~~~~R--~~~~~~~F~~~~~~-~f~ 120 (140)
.-..+.+.+++.++|+|.+++-.... ..+.+....+.+++ ||.
T Consensus 393 ~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 393 YSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred chHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 12357888889999999988744322 22334455566654 683
No 135
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=90.87 E-value=1.6 Score=31.83 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=55.8
Q ss_pred cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462 3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE 80 (140)
Q Consensus 3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~ 80 (140)
.-|| +||+-|. ...+..|++|++.=+... ....+..-..+|-.. .....+||+|. .|-=|...+.+
T Consensus 63 SRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~--------~~~~~~~da~~~L~~---~~~~~~FDlVf-lDPPy~~~l~~ 130 (187)
T COG0742 63 SRGAARVVFVEKDRKAVKILKENLKALGLEG--------EARVLRNDALRALKQ---LGTREPFDLVF-LDPPYAKGLLD 130 (187)
T ss_pred hCCCceEEEEecCHHHHHHHHHHHHHhCCcc--------ceEEEeecHHHHHHh---cCCCCcccEEE-eCCCCccchhh
Confidence 3577 8999998 779999999988755321 011222223322111 11123599876 58888877776
Q ss_pred HHHHHHH----HhcCCCeEEEEEEEec
Q 032462 81 PLLQTIF----ALSGPKTTILLGYEIR 103 (140)
Q Consensus 81 ~L~~tl~----~ll~~~~~~~~~~~~R 103 (140)
.....+. .+++|++.+++=+...
T Consensus 131 ~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 131 KELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 6666555 3578888888876654
No 136
>PRK06202 hypothetical protein; Provisional
Probab=90.50 E-value=2.4 Score=31.27 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=44.3
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--chHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPL 82 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--~~~~L 82 (140)
++|+.+|. ++++...+.+...+.. .+... .....+.....||+|+++.++..=. ....+
T Consensus 89 ~~v~gvD~s~~~l~~a~~~~~~~~~---------------~~~~~---~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~ 150 (232)
T PRK06202 89 LEVTAIDPDPRAVAFARANPRRPGV---------------TFRQA---VSDELVAEGERFDVVTSNHFLHHLDDAEVVRL 150 (232)
T ss_pred cEEEEEcCCHHHHHHHHhccccCCC---------------eEEEE---ecccccccCCCccEEEECCeeecCChHHHHHH
Confidence 59999998 8888888877643321 11111 1111111246899999999986532 23445
Q ss_pred HHHHHHhcCCCeEEEEEEEec
Q 032462 83 LQTIFALSGPKTTILLGYEIR 103 (140)
Q Consensus 83 ~~tl~~ll~~~~~~~~~~~~R 103 (140)
++-+.++++ +.+++..-.|
T Consensus 151 l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 151 LADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred HHHHHHhcC--eeEEEecccc
Confidence 666655554 3444443333
No 137
>PLN02476 O-methyltransferase
Probab=90.29 E-value=2.7 Score=32.49 Aligned_cols=106 Identities=11% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-cccc-----CCCccEEEEeecccCcc
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV-----APPFDYIIGTDVVYAEH 77 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~-----~~~~D~IlasDviY~~~ 77 (140)
+.+|+..|. ++.....++|++.++.. .+|++. .|+..+ .+.. ..+||+|+- |. ++.
T Consensus 143 ~G~V~TiE~d~e~~~~Ar~n~~~aGl~-----------~~I~li---~GdA~e~L~~l~~~~~~~~FD~VFI-Da--~K~ 205 (278)
T PLN02476 143 SGCLVACERDSNSLEVAKRYYELAGVS-----------HKVNVK---HGLAAESLKSMIQNGEGSSYDFAFV-DA--DKR 205 (278)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCC-----------CcEEEE---EcCHHHHHHHHHhcccCCCCCEEEE-CC--CHH
Confidence 347999998 77899999999988652 344443 454322 1111 357997653 21 245
Q ss_pred chHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHH--hcCeEEeecCC
Q 032462 78 LLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK--SNFNVKLVPKA 127 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~~--~~f~v~~v~~~ 127 (140)
.....+..+..+++|+|.+++=...... .....|.+.+. ..|....+|..
T Consensus 206 ~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPig 269 (278)
T PLN02476 206 MYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIG 269 (278)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeC
Confidence 6777888888899999988764333221 12577888773 46777766653
No 138
>PLN02366 spermidine synthase
Probab=90.19 E-value=4.5 Score=31.72 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=59.8
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-ccc-CCCccEEEEeecccCcc------
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAV-APPFDYIIGTDVVYAEH------ 77 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-~~~-~~~~D~IlasDviY~~~------ 77 (140)
+|++-|. +++++..++.+..-.... ..+++++. +++.-.. ... ..+||+||. |+ +++.
T Consensus 117 ~V~~VEiD~~Vi~~ar~~f~~~~~~~--------~dpRv~vi---~~Da~~~l~~~~~~~yDvIi~-D~-~dp~~~~~~L 183 (308)
T PLN02366 117 QIDICEIDKMVIDVSKKFFPDLAVGF--------DDPRVNLH---IGDGVEFLKNAPEGTYDAIIV-DS-SDPVGPAQEL 183 (308)
T ss_pred eEEEEECCHHHHHHHHHhhhhhcccc--------CCCceEEE---EChHHHHHhhccCCCCCEEEE-cC-CCCCCchhhh
Confidence 8999998 678999998875321111 23455544 3432111 111 457999985 64 3322
Q ss_pred chHHHHHHHHHhcCCCeEEEEEE--EecChhHHHHHHHHHHhcC
Q 032462 78 LLEPLLQTIFALSGPKTTILLGY--EIRSTSVHEQMLQMWKSNF 119 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~~~--~~R~~~~~~~F~~~~~~~f 119 (140)
.-..+.+.++..|+|+|.+.+-. .....+......+.+++.|
T Consensus 184 ~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 184 FEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred hHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 23457888888999999985421 1223344566677777777
No 139
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.59 E-value=1.2 Score=32.54 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=54.0
Q ss_pred EEEeecCCCccccc-cCCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEee
Q 032462 46 AVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV 124 (140)
Q Consensus 46 ~~~LdWg~~~~~~~-~~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v 124 (140)
..-+|.+.+...|. ....||+|||-=-.-..++...=..|++.|.+++.++++|..-+..+...+.+...+..|.-+.
T Consensus 117 FvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~~~~sF~PeH- 195 (217)
T KOG3350|consen 117 FVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPVLKCSFRPEH- 195 (217)
T ss_pred eEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhhhhccccchh-
Confidence 33445555544432 3567999987544445567888888999999998899999887765544444443334554332
Q ss_pred cCCCCCcccCC
Q 032462 125 PKAKESTMWGN 135 (140)
Q Consensus 125 ~~~~l~~~~~~ 135 (140)
..-|.-+|+|
T Consensus 196 -~~nLaNeF~c 205 (217)
T KOG3350|consen 196 -ERNLANEFRC 205 (217)
T ss_pred -hcccccceeE
Confidence 3334444444
No 140
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=89.33 E-value=1 Score=35.48 Aligned_cols=61 Identities=18% Similarity=0.061 Sum_probs=37.5
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHh-hcccccCCCCCCCCCceEEEEe-ecCCCc-cccccCCCccEEEEeecccCc
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVEL-DWGNED-HIKAVAPPFDYIIGTDVVYAE 76 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N-~~~~~~~~~~~~~~~~v~~~~L-dWg~~~-~~~~~~~~~D~IlasDviY~~ 76 (140)
|+++++||. +..+...++|++.| .. ...+.+..- +=++.. ........||+|++-=-.|..
T Consensus 138 ~~~~~atDId~~Al~~A~~Nv~~Np~l-----------~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 138 GWRFVGSDIDPQALASAQAIISANPGL-----------NGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhccCC-----------cCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCc
Confidence 679999998 78999999999999 43 234444320 101000 000124579999876655543
No 141
>PRK06922 hypothetical protein; Provisional
Probab=89.10 E-value=2.9 Score=36.23 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=51.0
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeeccc---------
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY--------- 74 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY--------- 74 (140)
+++|+..|. +.++..++.|...+.. ++.+..-|=.+.+. ......||+|+.+-++-
T Consensus 442 ~~kVtGIDIS~~MLe~Ararl~~~g~-------------~ie~I~gDa~dLp~-~fedeSFDvVVsn~vLH~L~syIp~~ 507 (677)
T PRK06922 442 DKRIYGIDISENVIDTLKKKKQNEGR-------------SWNVIKGDAINLSS-SFEKESVDTIVYSSILHELFSYIEYE 507 (677)
T ss_pred CCEEEEEECCHHHHHHHHHHhhhcCC-------------CeEEEEcchHhCcc-ccCCCCEEEEEEchHHHhhhhhcccc
Confidence 569999998 6789999888654321 22222212111110 01245799999875542
Q ss_pred ----CccchHHHHHHHHHhcCCCeEEEEEEE
Q 032462 75 ----AEHLLEPLLQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 75 ----~~~~~~~L~~tl~~ll~~~~~~~~~~~ 101 (140)
.......+++.+...++|+|.+++...
T Consensus 508 g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 508 GKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred cccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 123445667777778899999998753
No 142
>PRK04148 hypothetical protein; Provisional
Probab=88.58 E-value=0.64 Score=32.07 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=38.9
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc---
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--- 76 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--- 76 (140)
|+.+|.+|+++|. +..++.+++|. +.+..-|+.++ .+.+-=++|+||.-
T Consensus 35 L~~~G~~ViaIDi~~~aV~~a~~~~-------------------~~~v~dDlf~p--------~~~~y~~a~liysirpp 87 (134)
T PRK04148 35 LKESGFDVIVIDINEKAVEKAKKLG-------------------LNAFVDDLFNP--------NLEIYKNAKLIYSIRPP 87 (134)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHhC-------------------CeEEECcCCCC--------CHHHHhcCCEEEEeCCC
Confidence 4678999999998 77666665441 25556666654 33444467778873
Q ss_pred -cchHHHHHHHHHh
Q 032462 77 -HLLEPLLQTIFAL 89 (140)
Q Consensus 77 -~~~~~L~~tl~~l 89 (140)
++++++++.-+..
T Consensus 88 ~el~~~~~~la~~~ 101 (134)
T PRK04148 88 RDLQPFILELAKKI 101 (134)
T ss_pred HHHHHHHHHHHHHc
Confidence 4555555544443
No 143
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=88.50 E-value=1.5 Score=34.13 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=56.0
Q ss_pred CC-CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEE----EeecCCCccccccCCCccEEEEee------
Q 032462 4 LG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV----ELDWGNEDHIKAVAPPFDYIIGTD------ 71 (140)
Q Consensus 4 lG-a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~----~LdWg~~~~~~~~~~~~D~IlasD------ 71 (140)
++ ++|+++|. +..+.+..+|++++... +.+.+. +-+|.++.. ....++|+|++-=
T Consensus 170 L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-----------g~i~v~~~~me~d~~~~~~--l~~~~~dllvsNPPYI~~d 236 (328)
T KOG2904|consen 170 LPQCTVTAIDVSKAAIKLAKENAQRLKLS-----------GRIEVIHNIMESDASDEHP--LLEGKIDLLVSNPPYIRKD 236 (328)
T ss_pred CCCceEEEEeccHHHHHHHHHHHHHHhhc-----------CceEEEecccccccccccc--cccCceeEEecCCCccccc
Confidence 44 48999998 77899999999999863 566666 456766543 2345666665421
Q ss_pred ---------cccCccc-----------hHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462 72 ---------VVYAEHL-----------LEPLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 72 ---------viY~~~~-----------~~~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
..|++.+ .-.+..-..+++.|++.+++....|.
T Consensus 237 D~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~ 289 (328)
T KOG2904|consen 237 DNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERK 289 (328)
T ss_pred chhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccc
Confidence 2333321 12233334456678999998888554
No 144
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=88.36 E-value=3 Score=30.51 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=39.0
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEP 81 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~ 81 (140)
|.+|+..|. ++.+..+++|+. .+.+..-+-.++ .....||+|++..+++.- +....
T Consensus 67 ~~~v~giDiS~~~l~~A~~~~~-----------------~~~~~~~d~~~~----~~~~sfD~V~~~~vL~hl~p~~~~~ 125 (204)
T TIGR03587 67 FKHIYGVEINEYAVEKAKAYLP-----------------NINIIQGSLFDP----FKDNFFDLVLTKGVLIHINPDNLPT 125 (204)
T ss_pred CCeEEEEECCHHHHHHHHhhCC-----------------CCcEEEeeccCC----CCCCCEEEEEECChhhhCCHHHHHH
Confidence 569999998 789998887641 112222222221 225689999999998743 33344
Q ss_pred HHHHHHHhc
Q 032462 82 LLQTIFALS 90 (140)
Q Consensus 82 L~~tl~~ll 90 (140)
.++.+.+.+
T Consensus 126 ~l~el~r~~ 134 (204)
T TIGR03587 126 AYRELYRCS 134 (204)
T ss_pred HHHHHHhhc
Confidence 444444443
No 145
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=88.34 E-value=5.2 Score=30.97 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=52.6
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEee-cccC--ccch
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTD-VVYA--EHLL 79 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-~~~~~D~IlasD-viY~--~~~~ 79 (140)
|.+|+.-|. +++|...++++....+. -++....-|-.+....+. ......+++.++ .+++ ++-.
T Consensus 88 ~~~~~~iDiS~~mL~~a~~~l~~~~p~-----------~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~ 156 (301)
T TIGR03438 88 PARYVPIDISADALKESAAALAADYPQ-----------LEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEA 156 (301)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhCCC-----------ceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHH
Confidence 579999998 78999998888754321 122211111111111111 011234455444 4554 3456
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRST 105 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~ 105 (140)
..+++-+.+.++|+|.++++...+..
T Consensus 157 ~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 157 VAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred HHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 67888888889999999987766543
No 146
>PRK01581 speE spermidine synthase; Validated
Probab=88.31 E-value=6.3 Score=31.86 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=57.9
Q ss_pred CEEEEecc-hhHHHHHHHHHH---HhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc----
Q 032462 6 CNVITTDQ-IEVLPLLKRNVE---WNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---- 77 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~---~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~---- 77 (140)
.+|++-|. +++++..+..-. .|+... ..+++++..=|--+. .+....+||+|+ +|+ .++.
T Consensus 175 ~~It~VEIDpeVIelAr~~~~L~~~~~~~~--------~DpRV~vvi~Da~~f--L~~~~~~YDVII-vDl-~DP~~~~~ 242 (374)
T PRK01581 175 LHVDLVDLDGSMINMARNVPELVSLNKSAF--------FDNRVNVHVCDAKEF--LSSPSSLYDVII-IDF-PDPATELL 242 (374)
T ss_pred CeEEEEeCCHHHHHHHHhccccchhccccC--------CCCceEEEECcHHHH--HHhcCCCccEEE-EcC-CCccccch
Confidence 48999999 778888885311 232211 134555443222211 122356899999 464 3331
Q ss_pred ---chHHHHHHHHHhcCCCeEEEEEEEecC--hhHHHHHHHHHHh-cCeEE
Q 032462 78 ---LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKS-NFNVK 122 (140)
Q Consensus 78 ---~~~~L~~tl~~ll~~~~~~~~~~~~R~--~~~~~~F~~~~~~-~f~v~ 122 (140)
.-..+++.++..|+|+|.+.+-...-. ...+..+.+.+++ +|.+.
T Consensus 243 ~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 243 STLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred hhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceE
Confidence 125578888899999999765433111 1223445555644 55544
No 147
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.74 E-value=2.2 Score=31.70 Aligned_cols=78 Identities=23% Similarity=0.271 Sum_probs=47.7
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL 79 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~ 79 (140)
||+++.+|+..+. +.+....++|++..+. .+|.+ .+|+...--....+||.|+.+=. -++..
T Consensus 90 la~l~~~V~siEr~~~L~~~A~~~L~~lg~------------~nV~v---~~gDG~~G~~~~aPyD~I~Vtaa--a~~vP 152 (209)
T COG2518 90 LARLVGRVVSIERIEELAEQARRNLETLGY------------ENVTV---RHGDGSKGWPEEAPYDRIIVTAA--APEVP 152 (209)
T ss_pred HHHHhCeEEEEEEcHHHHHHHHHHHHHcCC------------CceEE---EECCcccCCCCCCCcCEEEEeec--cCCCC
Confidence 5677779999997 8889999999888764 23433 34544322123579998875422 12333
Q ss_pred HHHHHHHHHhcCCCeEEEEE
Q 032462 80 EPLLQTIFALSGPKTTILLG 99 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~ 99 (140)
++|+ .-|+++|+.++-
T Consensus 153 ~~Ll----~QL~~gGrlv~P 168 (209)
T COG2518 153 EALL----DQLKPGGRLVIP 168 (209)
T ss_pred HHHH----HhcccCCEEEEE
Confidence 4444 445566665543
No 148
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=87.67 E-value=5.6 Score=31.38 Aligned_cols=73 Identities=18% Similarity=0.107 Sum_probs=44.7
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHHH
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQT 85 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~t 85 (140)
+|+..|. ++.+...++|++.++. .++.+..-|..+.. ....+||+|+.+- ..+.+...
T Consensus 107 ~VvgVDis~~~l~~Ar~~l~~~g~------------~nV~~i~gD~~~~~---~~~~~fD~Ii~~~------g~~~ip~~ 165 (322)
T PRK13943 107 LVVSVEYSRKICEIAKRNVRRLGI------------ENVIFVCGDGYYGV---PEFAPYDVIFVTV------GVDEVPET 165 (322)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCChhhcc---cccCCccEEEECC------chHHhHHH
Confidence 6999997 8899999999988753 23444333322111 1124699998752 22233344
Q ss_pred HHHhcCCCeEEEEEE
Q 032462 86 IFALSGPKTTILLGY 100 (140)
Q Consensus 86 l~~ll~~~~~~~~~~ 100 (140)
+...++|+|.+++..
T Consensus 166 ~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 166 WFTQLKEGGRVIVPI 180 (322)
T ss_pred HHHhcCCCCEEEEEe
Confidence 555677888877643
No 149
>PRK05785 hypothetical protein; Provisional
Probab=87.49 E-value=3.1 Score=30.89 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=44.5
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL 83 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~ 83 (140)
|.+|+..|. ++++...+... ..+ .-+ ....+.....||+|+++..+.+-...+..+
T Consensus 74 ~~~v~gvD~S~~Ml~~a~~~~-----------------~~~---~~d---~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l 130 (226)
T PRK05785 74 KYYVVALDYAENMLKMNLVAD-----------------DKV---VGS---FEALPFRDKSFDVVMSSFALHASDNIEKVI 130 (226)
T ss_pred CCEEEEECCCHHHHHHHHhcc-----------------ceE---Eec---hhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence 579999998 77887665321 001 111 112233357899999999997666677888
Q ss_pred HHHHHhcCCC
Q 032462 84 QTIFALSGPK 93 (140)
Q Consensus 84 ~tl~~ll~~~ 93 (140)
+-+.+.++|.
T Consensus 131 ~e~~RvLkp~ 140 (226)
T PRK05785 131 AEFTRVSRKQ 140 (226)
T ss_pred HHHHHHhcCc
Confidence 8888888884
No 150
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=87.19 E-value=5.2 Score=31.83 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=58.1
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEee-------cCCCcccc------ccCCCccE
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD-------WGNEDHIK------AVAPPFDY 66 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~Ld-------Wg~~~~~~------~~~~~~D~ 66 (140)
||..+.+|+..+. ++.+...++|++.|+. .++++...+ |.....+. .....+|.
T Consensus 214 la~~~~~V~gvE~~~~av~~A~~Na~~N~i------------~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~ 281 (352)
T PF05958_consen 214 LAKKAKKVIGVEIVEEAVEDARENAKLNGI------------DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDA 281 (352)
T ss_dssp HHCCSSEEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESE
T ss_pred HHhhCCeEEEeeCCHHHHHHHHHHHHHcCC------------CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCE
Confidence 4566779999998 8899999999999986 344444322 22111111 11235777
Q ss_pred EEEeecccCcc---chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEee
Q 032462 67 IIGTDVVYAEH---LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV 124 (140)
Q Consensus 67 IlasDviY~~~---~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v 124 (140)
|| -+|. +-+.+++.+.. .+..+||++-.. +..+=+..+.+|+.++.|
T Consensus 282 vi-----lDPPR~G~~~~~~~~~~~---~~~ivYvSCnP~---tlaRDl~~L~~~y~~~~v 331 (352)
T PF05958_consen 282 VI-----LDPPRAGLDEKVIELIKK---LKRIVYVSCNPA---TLARDLKILKEGYKLEKV 331 (352)
T ss_dssp EE-----E---TT-SCHHHHHHHHH---SSEEEEEES-HH---HHHHHHHHHHCCEEEEEE
T ss_pred EE-----EcCCCCCchHHHHHHHhc---CCeEEEEECCHH---HHHHHHHHHhhcCEEEEE
Confidence 63 4542 44556666654 467888887643 333323445568888876
No 151
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=86.54 E-value=1.6 Score=32.47 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=64.5
Q ss_pred CccCCCEEEEecc-hhHHHHH-HHHHH-HhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecc--cC
Q 032462 1 MALLGCNVITTDQ-IEVLPLL-KRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV--YA 75 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l-~~Ni~-~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi--Y~ 75 (140)
||..|.+||.-|. +..+... ++|-. -+....... .....++|++..=|--+... ....+||+|.=.-++ -.
T Consensus 55 La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~--~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alp 130 (218)
T PF05724_consen 55 LAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF--KRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALP 130 (218)
T ss_dssp HHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTE--EEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-
T ss_pred HHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccce--eeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCC
Confidence 5778999999998 6666655 32222 111100000 00012233333333332211 112467776533222 23
Q ss_pred ccchHHHHHHHHHhcCCCeEE-EEEEEecC-----h--hH-HHHHHHHHHhcCeEEeecCCCC
Q 032462 76 EHLLEPLLQTIFALSGPKTTI-LLGYEIRS-----T--SV-HEQMLQMWKSNFNVKLVPKAKE 129 (140)
Q Consensus 76 ~~~~~~L~~tl~~ll~~~~~~-~~~~~~R~-----~--~~-~~~F~~~~~~~f~v~~v~~~~l 129 (140)
++..+.-++.+.++++|+|.+ +++..... + .+ .+...+.+..+|+++.+...+.
T Consensus 131 p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~~~ 193 (218)
T PF05724_consen 131 PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEEDS 193 (218)
T ss_dssp GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTTEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEecccc
Confidence 578889999999999999984 44443221 1 12 3344455588999887765433
No 152
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=85.96 E-value=0.86 Score=32.48 Aligned_cols=59 Identities=22% Similarity=0.036 Sum_probs=36.0
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas 70 (140)
+|+.+.+|++-|. +.-+..+++|++.=+. ..+|.+..=||.+....-.....+|+|.+|
T Consensus 17 FA~~~~~Viaidid~~~~~~a~hNa~vYGv-----------~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 17 FARTFDRVIAIDIDPERLECAKHNAEVYGV-----------ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp HHHTT-EEEEEES-HHHHHHHHHHHHHTT------------GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred HHHhCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3566779999998 7789999999988764 256777777776542211111126777765
No 153
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=85.58 E-value=4.3 Score=31.18 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=54.5
Q ss_pred EEEeecCCCccccccCCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEe-------------cCh-------
Q 032462 46 AVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI-------------RST------- 105 (140)
Q Consensus 46 ~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~-------------R~~------- 105 (140)
.-..+|.+. ..+||+|.+--++=.-+..-.|++.|+..++|+|.+++|-.. +.+
T Consensus 140 l~~~~w~~~------~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~ 213 (265)
T PF05219_consen 140 LDIDDWQQT------DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVK 213 (265)
T ss_pred Eehhhhhcc------CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCC
Confidence 345568753 358999999999988888899999999999999999886431 111
Q ss_pred -----hHHHHHHHHHH-hcCeEEeecC
Q 032462 106 -----SVHEQMLQMWK-SNFNVKLVPK 126 (140)
Q Consensus 106 -----~~~~~F~~~~~-~~f~v~~v~~ 126 (140)
+-...|++-++ .||+++....
T Consensus 214 g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 214 GATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred CCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 12356775554 6999887543
No 154
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=85.23 E-value=6.4 Score=29.40 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=71.7
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEE-eecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL 83 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~-LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~ 83 (140)
+++|..|. ++-....++|++.-+.. .+|.... +||-+.-.. ....+||+|.. | -++...+..+
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~-----------~~i~~~~~gdal~~l~~-~~~~~fDliFI-D--adK~~yp~~l 149 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVD-----------DRIELLLGGDALDVLSR-LLDGSFDLVFI-D--ADKADYPEYL 149 (219)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCc-----------ceEEEEecCcHHHHHHh-ccCCCccEEEE-e--CChhhCHHHH
Confidence 38999998 88999999999987752 3466555 677654321 24689998864 1 1345667777
Q ss_pred HHHHHhcCCCeEEEEEEEecCh------------hH--HHHHHHHHH--hcCeEEeecC
Q 032462 84 QTIFALSGPKTTILLGYEIRST------------SV--HEQMLQMWK--SNFNVKLVPK 126 (140)
Q Consensus 84 ~tl~~ll~~~~~~~~~~~~R~~------------~~--~~~F~~~~~--~~f~v~~v~~ 126 (140)
.-+..+++|+|.+++-.-.+.. .+ .+.|.+... .+++...+|.
T Consensus 150 e~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~ 208 (219)
T COG4122 150 ERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPL 208 (219)
T ss_pred HHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEec
Confidence 7777889999988774443331 11 466777773 3677777773
No 155
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=84.35 E-value=11 Score=30.22 Aligned_cols=103 Identities=20% Similarity=0.189 Sum_probs=61.3
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc---
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--- 77 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--- 77 (140)
+.+|++|+-+|. ..++.-.+.|++.-+.. .-.... -| +....+.....+|-| ++|-=|..+
T Consensus 216 gl~G~~viG~Did~~mv~gak~Nl~~y~i~-----------~~~~~~--~~-Da~~lpl~~~~vdaI-atDPPYGrst~~ 280 (347)
T COG1041 216 GLMGARVIGSDIDERMVRGAKINLEYYGIE-----------DYPVLK--VL-DATNLPLRDNSVDAI-ATDPPYGRSTKI 280 (347)
T ss_pred hhcCceEeecchHHHHHhhhhhhhhhhCcC-----------ceeEEE--ec-ccccCCCCCCccceE-EecCCCCccccc
Confidence 468999999998 56888899999876521 000111 11 111112112246654 567777643
Q ss_pred -------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeec
Q 032462 78 -------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP 125 (140)
Q Consensus 78 -------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~ 125 (140)
+....+.++...+.++|.+.++.. +.. .....+.+|.+...-
T Consensus 281 ~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-~~~-----~~~~~~~~f~v~~~~ 329 (347)
T COG1041 281 KGEGLDELYEEALESASEVLKPGGRIVFAAP-RDP-----RHELEELGFKVLGRF 329 (347)
T ss_pred ccccHHHHHHHHHHHHHHHhhcCcEEEEecC-Ccc-----hhhHhhcCceEEEEE
Confidence 356677777778889998888877 222 112235688876543
No 156
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=84.17 E-value=8.2 Score=28.26 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=50.5
Q ss_pred ceEEEEeecCCCccc-----cccCCCccEEEEeecccCcc-----------chHHHHHHHHHhcCCCeEEEEEEEecChh
Q 032462 43 SIQAVELDWGNEDHI-----KAVAPPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTS 106 (140)
Q Consensus 43 ~v~~~~LdWg~~~~~-----~~~~~~~D~IlasDviY~~~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~ 106 (140)
.+.+...|..+.+.. +.....||+|+..=+.+... .+...++.+.++++|+|.+++.. .+...
T Consensus 92 ~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~-~~~~~ 170 (209)
T PRK11188 92 GVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV-FQGEG 170 (209)
T ss_pred CcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE-ecCcC
Confidence 467777777765311 11246899999743232211 12456777778899999998864 34433
Q ss_pred HHHHHHHHHHhcCeEEee
Q 032462 107 VHEQMLQMWKSNFNVKLV 124 (140)
Q Consensus 107 ~~~~F~~~~~~~f~v~~v 124 (140)
+..|+..+++.|.-.++
T Consensus 171 -~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 171 -FDEYLREIRSLFTKVKV 187 (209)
T ss_pred -HHHHHHHHHhCceEEEE
Confidence 67788888888875544
No 157
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=83.73 E-value=16 Score=29.17 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=20.9
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhc
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTS 29 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~ 29 (140)
|..|++-|. +.=+..|++|+++=+.
T Consensus 182 ~~iV~A~D~~~~Rl~~l~~nl~RlG~ 207 (355)
T COG0144 182 GAIVVAVDVSPKRLKRLRENLKRLGV 207 (355)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCC
Confidence 457899998 7789999999998654
No 158
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=82.69 E-value=5.8 Score=29.14 Aligned_cols=112 Identities=14% Similarity=0.173 Sum_probs=60.5
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCC---CCCCCCceEEEEeecCCCccccccCCCccEEEEe--ecccC----
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP---GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT--DVVYA---- 75 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~---~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas--DviY~---- 75 (140)
+.+++||. |..+.--++-+..|+.....-.. .+.....|.+.. .+-+- .+ ..++=|-.. +.-|-
T Consensus 69 ~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLv--fNPPY-Vp---t~~~~i~~~~i~~a~aGG~~ 142 (209)
T KOG3191|consen 69 ALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLV--FNPPY-VP---TSDEEIGDEGIASAWAGGKD 142 (209)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEE--ECCCc-Cc---CCcccchhHHHHHHHhcCcc
Confidence 47899998 88998888889999865321000 000011121111 11110 00 011101000 00022
Q ss_pred -ccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeec
Q 032462 76 -EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP 125 (140)
Q Consensus 76 -~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~ 125 (140)
.+..+-|+..+..+++|.|.+|+..-.|+.. ++.++.+ ++||.+..+-
T Consensus 143 Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 143 GREVTDRLLPQVPDILSPRGVFYLVALRANKP--KEILKILEKKGYGVRIAM 192 (209)
T ss_pred hHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--HHHHHHHhhcccceeEEE
Confidence 2356788888899999999999988877753 4556656 4577655443
No 159
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.01 E-value=8.5 Score=28.75 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=43.3
Q ss_pred EEEEeecccCc----cchHHHHHHHHHhcCCCeEEEEEEEecChhH----HHHHH---HHHH-hcCeE-EeecCCC
Q 032462 66 YIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIRSTSV----HEQML---QMWK-SNFNV-KLVPKAK 128 (140)
Q Consensus 66 ~IlasDviY~~----~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~----~~~F~---~~~~-~~f~v-~~v~~~~ 128 (140)
+|=..||||.+ .+.+-+..-.+.+++++|-++++-+-|+-++ .+-|- ++++ .+|++ +.+..+-
T Consensus 142 ~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LeP 217 (231)
T COG1889 142 LVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEP 217 (231)
T ss_pred hcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCC
Confidence 55567899974 5777788888899999999999999997421 22343 4443 47874 4444443
No 160
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=81.96 E-value=4.4 Score=32.32 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=49.3
Q ss_pred ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceE-EEEeecCCCccccccCCCccEEEEe---ecccCc
Q 032462 2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ-AVELDWGNEDHIKAVAPPFDYIIGT---DVVYAE 76 (140)
Q Consensus 2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~-~~~LdWg~~~~~~~~~~~~D~Ilas---DviY~~ 76 (140)
|+.|| +|++-|..++.+..++.+..|+.. ..|+ ++..-|+- ..| ..+.|+||.- =+++.+
T Consensus 79 akAGA~~V~aVe~S~ia~~a~~iv~~N~~~-----------~ii~vi~gkvEdi--~LP--~eKVDiIvSEWMGy~Ll~E 143 (346)
T KOG1499|consen 79 AKAGARKVYAVEASSIADFARKIVKDNGLE-----------DVITVIKGKVEDI--ELP--VEKVDIIVSEWMGYFLLYE 143 (346)
T ss_pred HHhCcceEEEEechHHHHHHHHHHHhcCcc-----------ceEEEeecceEEE--ecC--ccceeEEeehhhhHHHHHh
Confidence 67898 899999999999999999999863 2233 22233332 122 4789988742 233334
Q ss_pred cchHHHHHHHHHhcCCCeEE
Q 032462 77 HLLEPLLQTIFALSGPKTTI 96 (140)
Q Consensus 77 ~~~~~L~~tl~~ll~~~~~~ 96 (140)
+.++..+-+=.+.|+|+|.+
T Consensus 144 sMldsVl~ARdkwL~~~G~i 163 (346)
T KOG1499|consen 144 SMLDSVLYARDKWLKEGGLI 163 (346)
T ss_pred hhhhhhhhhhhhccCCCceE
Confidence 44444444444556655543
No 161
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=81.74 E-value=7.7 Score=27.60 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=41.5
Q ss_pred eEEEEeecCCCcccc-----ccCCCccEEEEeecc-----cCcc------chHHHHHHHHHhcCCCeEEEEEEEecChhH
Q 032462 44 IQAVELDWGNEDHIK-----AVAPPFDYIIGTDVV-----YAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSV 107 (140)
Q Consensus 44 v~~~~LdWg~~~~~~-----~~~~~~D~IlasDvi-----Y~~~------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~ 107 (140)
+.....+..+..... ....+||+|+..=.. +... ..+.++..+.++++|+|.+++..... ..
T Consensus 74 i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~-~~- 151 (188)
T TIGR00438 74 VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG-EE- 151 (188)
T ss_pred ceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC-cc-
Confidence 455555665432110 124579999962111 1111 12567777778889999998854222 22
Q ss_pred HHHHHHHHHhcCe
Q 032462 108 HEQMLQMWKSNFN 120 (140)
Q Consensus 108 ~~~F~~~~~~~f~ 120 (140)
...++..+++.|.
T Consensus 152 ~~~~l~~l~~~~~ 164 (188)
T TIGR00438 152 IDEYLNELRKLFE 164 (188)
T ss_pred HHHHHHHHHhhhc
Confidence 4567777766664
No 162
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=81.35 E-value=16 Score=27.63 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=60.3
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
++|++.|. +.+|...++=...-.. .. ..+-=++.+..|.....||+|..|=-+=+=...+..++
T Consensus 76 g~v~~~D~s~~ML~~a~~k~~~~~~------------~~---i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~ 140 (238)
T COG2226 76 GEVVGLDISESMLEVAREKLKKKGV------------QN---VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALK 140 (238)
T ss_pred ceEEEEECCHHHHHHHHHHhhccCc------------cc---eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHH
Confidence 58999998 7788877654432111 11 23333455555666789999999999888889999999
Q ss_pred HHHHhcCCCeEEEEEEEec
Q 032462 85 TIFALSGPKTTILLGYEIR 103 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~~~R 103 (140)
-+.+.++|+|++++.--.+
T Consensus 141 E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 141 EMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred HHHHhhcCCeEEEEEEcCC
Confidence 9999999999887655544
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=80.83 E-value=4.5 Score=29.76 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=70.4
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccc--cCCCccEEEEeecccCccchH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--VAPPFDYIIGTDVVYAEHLLE 80 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~--~~~~~D~IlasDviY~~~~~~ 80 (140)
+++|+..|. ++.....++|++..+. ..+|++..=+..+.-. ... ...+||+|.-= . ++....
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~-----------~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiD-a--~K~~y~ 135 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGL-----------DDRIEVIEGDALEVLPELANDGEEGQFDFVFID-A--DKRNYL 135 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTG-----------GGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEE-S--TGGGHH
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCC-----------CCcEEEEEeccHhhHHHHHhccCCCceeEEEEc-c--cccchh
Confidence 579999998 7889999999998765 2466666544332110 001 13589988652 2 456666
Q ss_pred HHHHHHHHhcCCCeEEEEEEEecCh----------h--HHHHHHHHHH--hcCeEEeecCC
Q 032462 81 PLLQTIFALSGPKTTILLGYEIRST----------S--VHEQMLQMWK--SNFNVKLVPKA 127 (140)
Q Consensus 81 ~L~~tl~~ll~~~~~~~~~~~~R~~----------~--~~~~F~~~~~--~~f~v~~v~~~ 127 (140)
..+..+..+++++|.+++=...... . ....|.+.+. ..|+...+|..
T Consensus 136 ~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpig 196 (205)
T PF01596_consen 136 EYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIG 196 (205)
T ss_dssp HHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECST
T ss_pred hHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeC
Confidence 7777777899999988775544321 1 2457888874 36776666653
No 164
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=80.60 E-value=20 Score=26.21 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=64.2
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCccchHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLL 83 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~~~~~L~ 83 (140)
.+|++-|. ++.+.++++|.+..+. .++++.. |+.++ .+. .+.||.|.-. ....++.++
T Consensus 59 ~~v~AIe~~~~a~~~~~~N~~~fg~------------~n~~vv~---g~Ap~~L~~-~~~~daiFIG----Gg~~i~~il 118 (187)
T COG2242 59 GRVIAIERDEEALELIERNAARFGV------------DNLEVVE---GDAPEALPD-LPSPDAIFIG----GGGNIEEIL 118 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCC------------CcEEEEe---ccchHhhcC-CCCCCEEEEC----CCCCHHHHH
Confidence 58999998 8899999999999873 3444443 32222 111 2257755322 235778899
Q ss_pred HHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcC-eEEeecCC
Q 032462 84 QTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNF-NVKLVPKA 127 (140)
Q Consensus 84 ~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f-~v~~v~~~ 127 (140)
.+....++|++++++-. .+-. +...-++.+ +.|+ ++.++--+
T Consensus 119 e~~~~~l~~ggrlV~na-itlE-~~~~a~~~~~~~g~~ei~~v~is 162 (187)
T COG2242 119 EAAWERLKPGGRLVANA-ITLE-TLAKALEALEQLGGREIVQVQIS 162 (187)
T ss_pred HHHHHHcCcCCeEEEEe-ecHH-HHHHHHHHHHHcCCceEEEEEee
Confidence 99999999999886543 3433 345556666 4577 66665443
No 165
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=80.27 E-value=3.8 Score=32.07 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=33.4
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc---ccCCCccEEEEeecccCcc
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK---AVAPPFDYIIGTDVVYAEH 77 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~---~~~~~~D~IlasDviY~~~ 77 (140)
.|++++.||. +..+...++||+.|... ...|++..-.=. ..-+. .....||+.++---.|...
T Consensus 125 ~~W~fvaTdID~~sl~~A~~nv~~N~~L----------~~~I~l~~~~~~-~~i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 125 YGWSFVATDIDPKSLESARENVERNPNL----------ESRIELRKQKNP-DNIFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp H--EEEEEES-HHHHHHHHHHHHHT-T-----------TTTEEEEE--ST--SSTTTSTT--S-EEEEEE-----SS-
T ss_pred cCCeEEEecCCHHHHHHHHHHHHhcccc----------ccceEEEEcCCc-cccchhhhcccceeeEEecCCccccCh
Confidence 3789999999 77999999999999321 356666543211 11111 1235799999877777754
No 166
>PHA03411 putative methyltransferase; Provisional
Probab=79.77 E-value=26 Score=27.21 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=57.5
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--c----
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--H---- 77 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~---- 77 (140)
+.+|+..|. +.++...++|.. + +.+ ..++..... ...+||+||+-...+.. .
T Consensus 88 ~~~V~gVDisp~al~~Ar~n~~-~----------------v~~---v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~ 146 (279)
T PHA03411 88 PEKIVCVELNPEFARIGKRLLP-E----------------AEW---ITSDVFEFE-SNEKFDVVISNPPFGKINTTDTKD 146 (279)
T ss_pred CCEEEEEECCHHHHHHHHHhCc-C----------------CEE---EECchhhhc-ccCCCcEEEEcCCccccCchhhhh
Confidence 469999998 778888887631 1 111 111111111 13579999986666541 1
Q ss_pred ---c-----------hHHHHHHHHHhcCCCeEEEEEEEecCh---h-HHHHHHHHH-HhcCeEEe
Q 032462 78 ---L-----------LEPLLQTIFALSGPKTTILLGYEIRST---S-VHEQMLQMW-KSNFNVKL 123 (140)
Q Consensus 78 ---~-----------~~~L~~tl~~ll~~~~~~~~~~~~R~~---~-~~~~F~~~~-~~~f~v~~ 123 (140)
. +..++.....++.|+|.++++|.-+.- + .-+++.+.+ +.||....
T Consensus 147 ~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 147 VFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred hhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEecC
Confidence 1 345666666777899999888876531 1 123444555 45887653
No 167
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=79.39 E-value=1.8 Score=35.58 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=26.2
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcc
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSR 30 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~ 30 (140)
|+.|++|++-|+ ++.+..|+.|+..|+..
T Consensus 268 ~kK~crV~aNDLNpesik~Lk~ni~lNkv~ 297 (495)
T KOG2078|consen 268 AKKGCRVYANDLNPESIKWLKANIKLNKVD 297 (495)
T ss_pred hhcCcEEEecCCCHHHHHHHHHhccccccc
Confidence 567899999997 99999999999999863
No 168
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=78.67 E-value=16 Score=28.01 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=53.2
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc---ccccCCCccEEEEeecccC--ccch
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---IKAVAPPFDYIIGTDVVYA--EHLL 79 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~---~~~~~~~~D~IlasDviY~--~~~~ 79 (140)
-+|.+-|. |..+++++.|...+... +.+.-|.-..+ .+.....+|+|.+-=|+=. ++-.
T Consensus 98 l~v~acDfsp~Ai~~vk~~~~~~e~~---------------~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~ 162 (264)
T KOG2361|consen 98 LKVYACDFSPRAIELVKKSSGYDESR---------------VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKM 162 (264)
T ss_pred eEEEEcCCChHHHHHHHhccccchhh---------------hcccceeccchhccCCCCcCccceEEEEEEEeccChHHH
Confidence 36888897 88899999888877642 22222322211 1123578999887655543 5566
Q ss_pred HHHHHHHHHhcCCCeEEEEEE
Q 032462 80 EPLLQTIFALSGPKTTILLGY 100 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~ 100 (140)
..-+.-+..+++|+|.+++.-
T Consensus 163 ~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 163 QSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred HHHHHHHHHHhCCCcEEEEee
Confidence 777777888889999998863
No 169
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=78.10 E-value=17 Score=29.61 Aligned_cols=82 Identities=11% Similarity=0.016 Sum_probs=56.1
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccc-----
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL----- 78 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~----- 78 (140)
+.+++..|. +.++..+.+++..++. .++.+..-|...... ......+|.|... .+.-
T Consensus 146 ~~~~iGIEI~~~~i~~a~~ka~~~gL------------~NV~~i~~DA~~ll~-~~~~~s~D~I~ln----FPdPW~Kkr 208 (390)
T PRK14121 146 NKLFIGIEIHTPSIEQVLKQIELLNL------------KNLLIINYDARLLLE-LLPSNSVEKIFVH----FPVPWDKKP 208 (390)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHhhh-hCCCCceeEEEEe----CCCCccccc
Confidence 458999997 7889999999887753 356666655432211 1124578887642 2221
Q ss_pred -----hHHHHHHHHHhcCCCeEEEEEEEec
Q 032462 79 -----LEPLLQTIFALSGPKTTILLGYEIR 103 (140)
Q Consensus 79 -----~~~L~~tl~~ll~~~~~~~~~~~~R 103 (140)
.+.+++.+.++++|+|.+.+..-..
T Consensus 209 HRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 209 HRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred hhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 2689999999999999998887644
No 170
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=77.98 E-value=8 Score=28.42 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=23.3
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHh
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWN 27 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N 27 (140)
+.+|| +|+.-|. ++.++.++.|...+
T Consensus 64 ~~lGa~~V~~vdiD~~a~ei~r~N~~~l 91 (198)
T COG2263 64 ALLGASRVLAVDIDPEALEIARANAEEL 91 (198)
T ss_pred HhcCCcEEEEEecCHHHHHHHHHHHHhh
Confidence 56898 8999998 88999999999984
No 171
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=77.21 E-value=12 Score=29.09 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=41.0
Q ss_pred CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEee
Q 032462 61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLV 124 (140)
Q Consensus 61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v 124 (140)
....|++|.|=-+- -..+..++.-..+.|.++|..|||-..-+-.....|.+.+ +.||.+..+
T Consensus 226 d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 226 DESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred cCcccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 34555555442222 2344566666778899999999996653333356799998 569987754
No 172
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=76.48 E-value=6 Score=30.46 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=68.9
Q ss_pred CCEEEEecc-hhHHHHHHH------HHHHhhcccc-----cCCCC------CCCCCceEEEEeecCCCccccccCCCccE
Q 032462 5 GCNVITTDQ-IEVLPLLKR------NVEWNTSRIS-----QMNPG------SDLLGSIQAVELDWGNEDHIKAVAPPFDY 66 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~------Ni~~N~~~~~-----~~~~~------~~~~~~v~~~~LdWg~~~~~~~~~~~~D~ 66 (140)
..+|++||. ..+|...+. ++..|.+.-- ...++ ..-...|.++.++=..+.. ...+||+
T Consensus 129 ~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~ 205 (268)
T COG1352 129 RVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP---FLGKFDL 205 (268)
T ss_pred ceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc---ccCCCCE
Confidence 348999998 567776653 3322222110 00111 1234567777777766542 4678999
Q ss_pred EEEeecc-cCc-cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHH
Q 032462 67 IIGTDVV-YAE-HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ 113 (140)
Q Consensus 67 IlasDvi-Y~~-~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~ 113 (140)
|++=+|+ |.. +.-..+++.+...++|+|..++++.-.-......|+.
T Consensus 206 IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~~~~~~~~~ 254 (268)
T COG1352 206 IFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIPGTSTEFFE 254 (268)
T ss_pred EEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccCCcccchhc
Confidence 9999975 554 5778999999999999999999988776543334433
No 173
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=76.06 E-value=0.65 Score=35.96 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=38.1
Q ss_pred CCccEEEEeecccCccchHHH-HHHHHHhcCCCeEEEEEEEecChh
Q 032462 62 PPFDYIIGTDVVYAEHLLEPL-LQTIFALSGPKTTILLGYEIRSTS 106 (140)
Q Consensus 62 ~~~D~IlasDviY~~~~~~~L-~~tl~~ll~~~~~~~~~~~~R~~~ 106 (140)
..||+|++|..+|.....+.+ ..+...|..+++++|++.+.-+-.
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~yFg 240 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLYFG 240 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHhhccC
Confidence 489999999999999988888 666667778999999998877643
No 174
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=75.56 E-value=19 Score=27.31 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=41.9
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~ 84 (140)
++|+..|. +..+...+++. +++.+..-+-.+ .+.....||+|+.. +.+. .+.
T Consensus 113 ~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~~---lp~~~~sfD~I~~~---~~~~----~~~ 165 (272)
T PRK11088 113 MQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSHR---LPFADQSLDAIIRI---YAPC----KAE 165 (272)
T ss_pred CeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeeccc---CCCcCCceeEEEEe---cCCC----CHH
Confidence 47899997 77777765431 122332222222 12224689999964 4333 346
Q ss_pred HHHHhcCCCeEEEEEEE
Q 032462 85 TIFALSGPKTTILLGYE 101 (140)
Q Consensus 85 tl~~ll~~~~~~~~~~~ 101 (140)
-+.+.++|+|.+++...
T Consensus 166 e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 166 ELARVVKPGGIVITVTP 182 (272)
T ss_pred HHHhhccCCCEEEEEeC
Confidence 67778999999987654
No 175
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=75.04 E-value=18 Score=25.25 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=34.8
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE 76 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~ 76 (140)
+..+++|++.|. +..++.+++|+..+ .++++..-|..+.. . ....||.|++ +.-|..
T Consensus 32 ~~~~~~v~~vE~~~~~~~~~~~~~~~~--------------~~v~ii~~D~~~~~-~--~~~~~d~vi~-n~Py~~ 89 (169)
T smart00650 32 LERAARVTAIEIDPRLAPRLREKFAAA--------------DNLTVIHGDALKFD-L--PKLQPYKVVG-NLPYNI 89 (169)
T ss_pred HhcCCeEEEEECCHHHHHHHHHHhccC--------------CCEEEEECchhcCC-c--cccCCCEEEE-CCCccc
Confidence 344679999998 77899999888431 23444443333221 1 1235888764 677764
No 176
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=74.28 E-value=27 Score=28.21 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=45.4
Q ss_pred EEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccc---hHHHHHH
Q 032462 9 ITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---LEPLLQT 85 (140)
Q Consensus 9 v~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~---~~~L~~t 85 (140)
.+||.--.-.-++.|++.|+.. ...+. .++=.. .....+|+|| +|.|.. .+.++..
T Consensus 69 ~~~ds~~~~~~~~~n~~~n~~~----------~~~~~--~~~~~~-----~~~~~~d~vl----~~~PK~~~~l~~~l~~ 127 (378)
T PRK15001 69 SIGDSYISELATRENLRLNGID----------ESSVK--FLDSTA-----DYPQQPGVVL----IKVPKTLALLEQQLRA 127 (378)
T ss_pred eeehHHHHHHHHHHHHHHcCCC----------cccce--eecccc-----cccCCCCEEE----EEeCCCHHHHHHHHHH
Confidence 4577644556788999999752 11222 221111 1245688875 677764 4555666
Q ss_pred HHHhcCCCeEEEEEEEecC
Q 032462 86 IFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 86 l~~ll~~~~~~~~~~~~R~ 104 (140)
+...+.+++.++++.+.+.
T Consensus 128 l~~~l~~~~~ii~g~~~k~ 146 (378)
T PRK15001 128 LRKVVTSDTRIIAGAKARD 146 (378)
T ss_pred HHhhCCCCCEEEEEEecCC
Confidence 6666789999877666554
No 177
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=71.04 E-value=5.5 Score=29.13 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=39.1
Q ss_pred CCceEEEEeecCCCccccccCCCccEEEEeecc-cC-ccchHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462 41 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-YA-EHLLEPLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 41 ~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi-Y~-~~~~~~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
...|+...++=-+.. ....+||+|++-.|+ |. ++....+++.+...|+|+|..+++....-
T Consensus 117 r~~V~F~~~NL~~~~---~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l 179 (196)
T PF01739_consen 117 RKMVRFRRHNLLDPD---PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESL 179 (196)
T ss_dssp HTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--S
T ss_pred cCceEEEecccCCCC---cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccC
Confidence 356888888877721 235799999999985 44 46888999999999999999999876543
No 178
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=69.17 E-value=5.2 Score=32.30 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=42.9
Q ss_pred CC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc-cchHH
Q 032462 5 GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-HLLEP 81 (140)
Q Consensus 5 Ga-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~-~~~~~ 81 (140)
|. +|++-|. ++.++++++|+++|+... ..+++..-|=..- .......||+| |+ +| -...|
T Consensus 73 ~~~~v~~NDi~~~a~~~i~~N~~~N~~~~----------~~~~v~~~DAn~l--l~~~~~~fD~I---Dl--DPfGSp~p 135 (377)
T PF02005_consen 73 GVDKVTANDISPEAVELIKRNLELNGLED----------ERIEVSNMDANVL--LYSRQERFDVI---DL--DPFGSPAP 135 (377)
T ss_dssp SECEEEEEES-HHHHHHHHHHHHHCT-SG----------CCEEEEES-HHHH--HCHSTT-EEEE---EE----SS--HH
T ss_pred CCCEEEEecCCHHHHHHHHHhHhhccccC----------ceEEEehhhHHHH--hhhccccCCEE---Ee--CCCCCccH
Confidence 44 8999998 889999999999998742 1333332111100 00124566665 22 22 13446
Q ss_pred HHHHHHHhcCCCeEEEEEEE
Q 032462 82 LLQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 82 L~~tl~~ll~~~~~~~~~~~ 101 (140)
++++.-+..+.+|.+.+..+
T Consensus 136 fldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 136 FLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HHHHHHHHEEEEEEEEEEE-
T ss_pred hHHHHHHHhhcCCEEEEecc
Confidence 66666555555666666555
No 179
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=69.03 E-value=11 Score=26.80 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=40.8
Q ss_pred EEEeecCCCcccc-ccCCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChh
Q 032462 46 AVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 106 (140)
Q Consensus 46 ~~~LdWg~~~~~~-~~~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~ 106 (140)
..-+|-.++...+ ....++|+||+==--..++.......|++.|+++++.++++...+...
T Consensus 68 F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~ 129 (162)
T PF10237_consen 68 FVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEMEE 129 (162)
T ss_pred eEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHHH
Confidence 3344444444333 235788887763334445677788899999999999999988766543
No 180
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=68.75 E-value=22 Score=26.34 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=54.6
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHHH
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLL 83 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L~ 83 (140)
+.--||. +..++-++..++..+...- ...-.+.+..-.|......+.....||.|+++-++--. +..+.|+
T Consensus 51 ~WqPSD~~~~~~~sI~a~~~~~~~~Nv------~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf 124 (204)
T PF06080_consen 51 TWQPSDPDDNLRPSIRAWIAEAGLPNV------RPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLF 124 (204)
T ss_pred EEcCCCCChHHHhhHHHHHHhcCCccc------CCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHH
Confidence 4566888 4455778777776543210 01122333333343321112246789999999998875 4789999
Q ss_pred HHHHHhcCCCeEEEE
Q 032462 84 QTIFALSGPKTTILL 98 (140)
Q Consensus 84 ~tl~~ll~~~~~~~~ 98 (140)
.-..++|.++|.+++
T Consensus 125 ~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 125 AGAARLLKPGGLLFL 139 (204)
T ss_pred HHHHHhCCCCCEEEE
Confidence 999999999888755
No 181
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=68.19 E-value=12 Score=28.27 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=41.6
Q ss_pred EeecccC----ccchHHHHHHHHHhcCCCeEEEEEEEecChh----HHHHHH---HHHH-hcCeE-EeecCCCCCc
Q 032462 69 GTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQML---QMWK-SNFNV-KLVPKAKEST 131 (140)
Q Consensus 69 asDviY~----~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~----~~~~F~---~~~~-~~f~v-~~v~~~~l~~ 131 (140)
..|+||. +++.+-++.-.+.+|+++|.++++.+-|.-+ ...-|- ++++ .+|++ +++..+-.+.
T Consensus 143 ~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~ 218 (229)
T PF01269_consen 143 MVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYER 218 (229)
T ss_dssp -EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTST
T ss_pred cccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCC
Confidence 4556665 4677778888888999999999999988632 133444 4454 48985 6676655543
No 182
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=67.58 E-value=33 Score=26.04 Aligned_cols=78 Identities=14% Similarity=0.028 Sum_probs=50.5
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccccc------CCCccEEEEeecccCcc
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV------APPFDYIIGTDVVYAEH 77 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~------~~~~D~IlasDviY~~~ 77 (140)
+++|+..|. ++.....+.|++..+. ..+|++..=+..+. .+.. ..+||+|.- |. ++.
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~-----------~~~I~~~~G~a~e~--L~~l~~~~~~~~~fD~iFi-Da--dK~ 167 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGV-----------AHKIDFREGPALPV--LDQMIEDGKYHGTFDFIFV-DA--DKD 167 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeccHHHH--HHHHHhccccCCcccEEEe-cC--CHH
Confidence 568999998 7788899999997764 24555443333221 1111 258997754 21 245
Q ss_pred chHHHHHHHHHhcCCCeEEEE
Q 032462 78 LLEPLLQTIFALSGPKTTILL 98 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~ 98 (140)
.....+..+..+++++|.+++
T Consensus 168 ~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 168 NYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HhHHHHHHHHHhcCCCeEEEE
Confidence 566667777788899998775
No 183
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=65.78 E-value=20 Score=27.46 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=29.6
Q ss_pred CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEec
Q 032462 61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 103 (140)
Q Consensus 61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R 103 (140)
....|+|+++-|+-.=+ .+.+.+.+.++|+++|-++...--|
T Consensus 98 e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 98 EESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred CcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 57899999999987644 3578888888888766333333333
No 184
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=64.89 E-value=25 Score=26.29 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=38.9
Q ss_pred CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEee
Q 032462 61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV 124 (140)
Q Consensus 61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v 124 (140)
....|++|.|=-+- ...+..++.--.+.|+++|..+|+-..-+-+..+.|.+.++ -||.+..-
T Consensus 120 ~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 120 DESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEE
T ss_pred CCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEec
Confidence 45566666553222 23445566666678889999999865433334689999995 59997753
No 185
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=64.52 E-value=7.2 Score=31.48 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.3
Q ss_pred CC-EEEEecc-hhHHHHHHHHHHHh
Q 032462 5 GC-NVITTDQ-IEVLPLLKRNVEWN 27 (140)
Q Consensus 5 Ga-~Vv~TD~-~~vl~~l~~Ni~~N 27 (140)
|. +|++.|. |+.++++++|+..|
T Consensus 75 ~~~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 75 GVVKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CccEEEEccCCHHHHHHHHHHHHhc
Confidence 45 8999998 99999999999999
No 186
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=62.57 E-value=41 Score=23.83 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=40.5
Q ss_pred CCCccEEEE-------------eecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEe
Q 032462 61 APPFDYIIG-------------TDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL 123 (140)
Q Consensus 61 ~~~~D~Ila-------------sDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~ 123 (140)
..+||.||- ..+-.+..++..++...+.++.++|.|.|......+-..=...+.+ +.||.+.+
T Consensus 73 ~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 73 NQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVR 149 (166)
T ss_pred CCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEE
Confidence 467888762 2333445677788888888899999999998877551011112344 45887543
No 187
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=58.51 E-value=33 Score=30.00 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=38.3
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE 76 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~ 76 (140)
.+++.+|. +.++...+.|+..++. ...+.+..-|+.+... +.....||+|| ++-=|..
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~-----------~~~i~~~~~D~~~~~~-~~~~~~~d~Iv-tNPPYg~ 315 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGV-----------AELITFEVKDVADLKN-PLPKGPTGLVI-SNPPYGE 315 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCC-----------CcceEEEeCChhhccc-ccccCCCCEEE-ECCCCcC
Confidence 47999998 8899999999999875 2456666666655421 11123578754 5555543
No 188
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=58.39 E-value=22 Score=27.32 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=44.8
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEE
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIG 69 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ila 69 (140)
||+.|.+|+++-. .+-|..|++.++... ...+.+.+.|-.+++.... ...++|++|-
T Consensus 26 lA~~g~~liLvaR~~~kL~~la~~l~~~~------------~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVN 90 (265)
T COG0300 26 LARRGYNLILVARREDKLEALAKELEDKT------------GVEVEVIPADLSDPEALERLEDELKERGGPIDVLVN 90 (265)
T ss_pred HHHCCCEEEEEeCcHHHHHHHHHHHHHhh------------CceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEE
Confidence 5788999999997 789999999998765 3678999999998875432 1247887774
No 189
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=57.34 E-value=8.6 Score=28.82 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=14.6
Q ss_pred CccCCC-EEEEecc-hhHH-HHHHHH
Q 032462 1 MALLGC-NVITTDQ-IEVL-PLLKRN 23 (140)
Q Consensus 1 lA~lGa-~Vv~TD~-~~vl-~~l~~N 23 (140)
|+..|+ +|++-|. +..+ ..++.|
T Consensus 93 l~~~ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 93 ALQKGAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred HHHcCCCEEEEEeCCHHHHHHHHhcC
Confidence 356687 8999997 5333 344444
No 190
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=56.71 E-value=50 Score=27.55 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=19.8
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhh
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNT 28 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~ 28 (140)
..|++-|. +.-+..|++|+++-+
T Consensus 139 g~lvA~D~~~~R~~~L~~nl~r~G 162 (470)
T PRK11933 139 GAIVANEYSASRVKVLHANISRCG 162 (470)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcC
Confidence 38999997 778999999999854
No 191
>PRK10742 putative methyltransferase; Provisional
Probab=56.68 E-value=11 Score=28.74 Aligned_cols=83 Identities=16% Similarity=0.270 Sum_probs=46.8
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCce-EEEEeecCCCccc-cccCCCccEEEEeecccCcc
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSI-QAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAEH 77 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v-~~~~LdWg~~~~~-~~~~~~~D~IlasDviY~~~ 77 (140)
||.+|++|++-+. +.+..++++|++.-..... ....+ .-..+.-++.... ......||+|- .|-+|.+.
T Consensus 106 las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~-------~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY-lDPMfp~~ 177 (250)
T PRK10742 106 LASVGCRVRMLERNPVVAALLDDGLARGYADAE-------IGGWLQERLQLIHASSLTALTDITPRPQVVY-LDPMFPHK 177 (250)
T ss_pred HHHcCCEEEEEECCHHHHHHHHHHHHHhhhccc-------cchhhhceEEEEeCcHHHHHhhCCCCCcEEE-ECCCCCCC
Confidence 4678999999998 7788999999998422100 00100 1112222322111 11234688877 79999864
Q ss_pred c----hHHHHHHHHHhcC
Q 032462 78 L----LEPLLQTIFALSG 91 (140)
Q Consensus 78 ~----~~~L~~tl~~ll~ 91 (140)
. ...=++.+++|.+
T Consensus 178 ~ksa~vkk~mr~~~~l~g 195 (250)
T PRK10742 178 QKSALVKKEMRVFQSLVG 195 (250)
T ss_pred ccccchhhhHHHHHHhcC
Confidence 3 3344555555543
No 192
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=56.13 E-value=1e+02 Score=24.42 Aligned_cols=87 Identities=10% Similarity=0.022 Sum_probs=53.0
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecc--cC-ccchHHH
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV--YA-EHLLEPL 82 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi--Y~-~~~~~~L 82 (140)
+|++-|+ +..+..=+.=|+.++. ...+++..-|=.+........+.++++|.|-+. |. .+++...
T Consensus 163 ~i~LrDys~~Nv~~g~~li~~~gL-----------~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~s 231 (311)
T PF12147_consen 163 SILLRDYSPINVEKGRALIAERGL-----------EDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRS 231 (311)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCC-----------ccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHH
Confidence 5677776 5455555555555543 244577777766655555567889999999764 22 2456666
Q ss_pred HHHHHHhcCCCeEEEEEEEecC
Q 032462 83 LQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 83 ~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
+.-+...+.|+|.++...+...
T Consensus 232 l~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 232 LAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred HHHHHHHhCCCcEEEEcCCCCC
Confidence 6666666777776655444333
No 193
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=54.70 E-value=24 Score=23.48 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=28.2
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 55 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~ 55 (140)
++|++-|. +...+.+++|++.|.. .++.+....+++.+
T Consensus 23 ~~v~~~E~~~~~~~~l~~~~~~n~~------------~~v~~~~~al~~~~ 61 (143)
T TIGR01444 23 GRVIAFEPLPDAYEILEENVKLNNL------------PNVVLLNAAVGDRD 61 (143)
T ss_pred CEEEEEecCHHHHHHHHHHHHHcCC------------CcEEEEEeeeeCCC
Confidence 37999997 8899999999999864 23556666655443
No 194
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=54.43 E-value=25 Score=24.70 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=32.9
Q ss_pred CCccEEEEeecccCccch---HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeecCCC
Q 032462 62 PPFDYIIGTDVVYAEHLL---EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 128 (140)
Q Consensus 62 ~~~D~IlasDviY~~~~~---~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~~~~ 128 (140)
..||.|| +|.|..- .-++..+...+.+++.++|.-+.|.. ++.-.++++..-.+.++...+
T Consensus 68 ~~~D~vv----ly~PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~G--IkSa~K~L~~~~~~~KiDSAR 131 (155)
T PF08468_consen 68 QDFDTVV----LYWPKAKAEAQYLLANLLSHLPPGTEIFVVGENKGG--IKSAEKQLAPYGKINKIDSAR 131 (155)
T ss_dssp TT-SEEE----EE--SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGT--GGGHHHHHTTTS--EEE---T
T ss_pred cCCCEEE----EEccCcHHHHHHHHHHHHHhCCCCCEEEEEecCccc--HHHHHHHHHhhCCcceeeccc
Confidence 5688885 7888654 44555555666789999999999975 344444454433455554433
No 195
>PRK09291 short chain dehydrogenase; Provisional
Probab=54.12 E-value=25 Score=25.66 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=33.8
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccccc-CCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-APPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~-~~~~D~Ilas 70 (140)
|+..|++|++++. ++-...++..... ....+.+...|+.++...... ..++|+|+-+
T Consensus 22 l~~~G~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 22 LARKGHNVIAGVQIAPQVTALRAEAAR-------------RGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-------------cCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 3457899999886 4333333322211 123577888999887644322 3478888875
No 196
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=53.95 E-value=64 Score=23.32 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=36.2
Q ss_pred EEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCcc--EEEEeecccCcc
Q 032462 8 VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFD--YIIGTDVVYAEH 77 (140)
Q Consensus 8 Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D--~IlasDviY~~~ 77 (140)
+++||+++.-...-+++..|.. .+|....+|+|..... ...++| +|+.=|+=+..+
T Consensus 3 IlvTDGD~~A~ravE~aa~~iG--------------gRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~ 67 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIG--------------GRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGE 67 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhC--------------cEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCC
Confidence 6789998776666666666653 2788899999975431 134444 555666655543
No 197
>PRK06139 short chain dehydrogenase; Provisional
Probab=52.60 E-value=23 Score=27.68 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=36.3
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
|+..|++|++++. ++-++.+...+... ...+.+...|..+.+.... ...++|++|-+
T Consensus 27 la~~G~~Vvl~~R~~~~l~~~~~~~~~~-------------g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnn 91 (330)
T PRK06139 27 FARRGARLVLAARDEEALQAVAEECRAL-------------GAEVLVVPTDVTDADQVKALATQAASFGGRIDVWVNN 91 (330)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4567999999996 55565555555432 2356677788887654321 13578987764
No 198
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=51.83 E-value=28 Score=27.07 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=36.0
Q ss_pred cCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC
Q 032462 3 LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA 75 (140)
Q Consensus 3 ~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~ 75 (140)
..+.+|++.|. +.+++.+++|+..+.. ..++++..-|.-+.+ ...||.|+ +.+=|+
T Consensus 56 ~~~~~V~avEiD~~li~~l~~~~~~~~~-----------~~~v~ii~~Dal~~~-----~~~~d~Vv-aNlPY~ 112 (294)
T PTZ00338 56 QLAKKVIAIEIDPRMVAELKKRFQNSPL-----------ASKLEVIEGDALKTE-----FPYFDVCV-ANVPYQ 112 (294)
T ss_pred HhCCcEEEEECCHHHHHHHHHHHHhcCC-----------CCcEEEEECCHhhhc-----ccccCEEE-ecCCcc
Confidence 45678999998 7799999999876542 134555554443321 23567666 456665
No 199
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=51.10 E-value=29 Score=25.42 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=35.5
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|++.|++|+++|. ++-++.+...+... ...+.....|..+.+.... ...++|+||-+=-
T Consensus 29 L~~~G~~vvl~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 95 (254)
T PRK08085 29 LAEYGAEIIINDITAERAELAVAKLRQE-------------GIKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHcCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4567899999997 44344333333211 2345677788887764321 2357898887554
Q ss_pred c
Q 032462 73 V 73 (140)
Q Consensus 73 i 73 (140)
+
T Consensus 96 ~ 96 (254)
T PRK08085 96 I 96 (254)
T ss_pred c
Confidence 3
No 200
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=51.08 E-value=30 Score=26.43 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=37.7
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc--------ccCCCccEEEEee
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--------AVAPPFDYIIGTD 71 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~--------~~~~~~D~IlasD 71 (140)
||++||+|++|+. ++-+...+.-+..... ...++.....|=.+.+... ....+.|+++-..
T Consensus 28 la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~~GkidiLvnna 97 (270)
T KOG0725|consen 28 LAKAGAKVVITGRSEERLEETAQELGGLGY----------TGGKVLAIVCDVSKEVDVEKLVEFAVEKFFGKIDILVNNA 97 (270)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----------CCCeeEEEECcCCCHHHHHHHHHHHHHHhCCCCCEEEEcC
Confidence 5789999999997 6666555544444332 1356666677666554321 1257788877543
No 201
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=50.67 E-value=82 Score=21.84 Aligned_cols=23 Identities=17% Similarity=0.071 Sum_probs=18.9
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhc
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTS 29 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~ 29 (140)
+|+.-|. ++.+...++.++.+..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~ 24 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL 24 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC
Confidence 6889996 8899999999888754
No 202
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=49.95 E-value=32 Score=24.91 Aligned_cols=59 Identities=22% Similarity=0.166 Sum_probs=35.2
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc-------ccCCCccEEEEeecc
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-------AVAPPFDYIIGTDVV 73 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~-------~~~~~~D~IlasDvi 73 (140)
+..|++|++++. ++-...+..-+..+ ..++.....|+.+.+... ....+.|+|+.+=-.
T Consensus 22 ~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 22 AAAGANVVVNDLGEAGAEAAAKVATDA-------------GGSVIYLVADVTKEDEIADMIAAAAAEFGGLDILVNNAGI 88 (255)
T ss_pred HHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 457899999997 44444444333221 245778888998876321 123567887765433
No 203
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=49.71 E-value=32 Score=24.96 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=33.8
Q ss_pred CccCCC-EEEEecchhH-HHHHHHHHHHhhcccccCCC------CCCCCCceEEEEeecCCCccccccCCCccEEEEe
Q 032462 1 MALLGC-NVITTDQIEV-LPLLKRNVEWNTSRISQMNP------GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa-~Vv~TD~~~v-l~~l~~Ni~~N~~~~~~~~~------~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas 70 (140)
||+.|. ++++-|.+.+ ..++.+|.-.+...++.... -..-.+.+++....+.-.+..+.....||+||.+
T Consensus 40 La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 40 LVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred HHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEEC
Confidence 577897 8999997543 34444433222211110000 0012244555555553322222234689999965
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=49.49 E-value=1.1e+02 Score=22.98 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=60.0
Q ss_pred CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCC-CccEEEEeeccc---Cc--c
Q 032462 6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAP-PFDYIIGTDVVY---AE--H 77 (140)
Q Consensus 6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~-~~D~IlasDviY---~~--~ 77 (140)
.+|++-|. +.+++..++-........ ..+++++.. ++.-. ...... +||+||. |+.- .. -
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~--------~d~r~~i~~---~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~l 168 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGL--------DDPRVRIII---GDGRKFLKETQEEKYDVIIV-DLTDPDGPAPNL 168 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTG--------GSTTEEEEE---STHHHHHHTSSST-EEEEEE-ESSSTTSCGGGG
T ss_pred ceEEEEecChHHHHHHHHhchhhcccc--------CCCceEEEE---hhhHHHHHhccCCcccEEEE-eCCCCCCCcccc
Confidence 38999999 779999988766554321 134454422 22211 112334 8999987 4332 11 1
Q ss_pred chHHHHHHHHHhcCCCeEEEEEEEecC--hhHHHHHHHHHHhcCe
Q 032462 78 LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKSNFN 120 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~--~~~~~~F~~~~~~~f~ 120 (140)
.-..+.+.+++.|+|+|.+.+-..... ........+.++..|.
T Consensus 169 ~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 169 FTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp SSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred cCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 346788999999999999876443332 2234444455666665
No 205
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=48.92 E-value=69 Score=23.57 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=43.6
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHHH
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQT 85 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~t 85 (140)
+|+.-|. +++....++|++..+. .+|.+..=| .........+||.|+.+=.+ ++....
T Consensus 99 ~Vv~vE~~~~l~~~A~~~l~~~~~------------~nv~~~~gd---g~~g~~~~apfD~I~v~~a~--~~ip~~---- 157 (209)
T PF01135_consen 99 RVVSVERDPELAERARRNLARLGI------------DNVEVVVGD---GSEGWPEEAPFDRIIVTAAV--PEIPEA---- 157 (209)
T ss_dssp EEEEEESBHHHHHHHHHHHHHHTT------------HSEEEEES----GGGTTGGG-SEEEEEESSBB--SS--HH----
T ss_pred eEEEECccHHHHHHHHHHHHHhcc------------CceeEEEcc---hhhccccCCCcCEEEEeecc--chHHHH----
Confidence 6888886 8899999999998764 345544433 11111124689998876444 222233
Q ss_pred HHHhcCCCeEEEEEEE
Q 032462 86 IFALSGPKTTILLGYE 101 (140)
Q Consensus 86 l~~ll~~~~~~~~~~~ 101 (140)
+-..|+++|++++-..
T Consensus 158 l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 158 LLEQLKPGGRLVAPIG 173 (209)
T ss_dssp HHHTEEEEEEEEEEES
T ss_pred HHHhcCCCcEEEEEEc
Confidence 4444667777766544
No 206
>PRK08223 hypothetical protein; Validated
Probab=48.43 E-value=5.4 Score=31.05 Aligned_cols=70 Identities=20% Similarity=0.151 Sum_probs=40.5
Q ss_pred CccCCC-EEEEecchhH-HHHHHHHHHHhhcccccCCC--------CCCCCCceEEEEeecCCCccccccCCCccEEEEe
Q 032462 1 MALLGC-NVITTDQIEV-LPLLKRNVEWNTSRISQMNP--------GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa-~Vv~TD~~~v-l~~l~~Ni~~N~~~~~~~~~--------~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas 70 (140)
||+.|. ++++-|.+.+ +.+|.+++-.+...++.... .-.+..+|++..-.|.... .......+|+||
T Consensus 46 LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n-~~~ll~~~DlVv-- 122 (287)
T PRK08223 46 LARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKEN-ADAFLDGVDVYV-- 122 (287)
T ss_pred HHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccC-HHHHHhCCCEEE--
Confidence 678897 9999998654 56777776554443321100 0012345555555665433 222346899998
Q ss_pred ecc
Q 032462 71 DVV 73 (140)
Q Consensus 71 Dvi 73 (140)
|++
T Consensus 123 D~~ 125 (287)
T PRK08223 123 DGL 125 (287)
T ss_pred ECC
Confidence 666
No 207
>PRK09242 tropinone reductase; Provisional
Probab=47.86 E-value=38 Score=24.80 Aligned_cols=59 Identities=8% Similarity=0.170 Sum_probs=34.7
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc-------ccCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-------AVAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~-------~~~~~~D~Ilas 70 (140)
|+..|++|++++. ++-+..+..++.... ....+.....|..+.+... ....++|+|+-+
T Consensus 29 l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ 95 (257)
T PRK09242 29 FLGLGADVLIVARDADALAQARDELAEEF-----------PEREVHGLAADVSDDEDRRAILDWVEDHWDGLHILVNN 95 (257)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhhC-----------CCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3567899999986 445555555554331 1245666777777654322 123578876544
No 208
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=47.64 E-value=49 Score=25.57 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=64.1
Q ss_pred CccCCCEEEEecchhHHHHHHHHHHHhhcccccC-----------C-------------CC---CCCCCceEEEEeecCC
Q 032462 1 MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQM-----------N-------------PG---SDLLGSIQAVELDWGN 53 (140)
Q Consensus 1 lA~lGa~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~-----------~-------------~~---~~~~~~v~~~~LdWg~ 53 (140)
+|++|..|...+.. ...++-.|.-+|...-..+ + |+ ......-.-..+.+|+
T Consensus 74 ia~~G~~~~gnE~S-~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGD 152 (270)
T PF07942_consen 74 IAKLGYAVQGNEFS-YFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGD 152 (270)
T ss_pred HhhccceEEEEEch-HHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCc
Confidence 47788888887765 3446777777775321110 0 00 0000111223344454
Q ss_pred Cccccc---cCCCccEEEEeecccCc---cchHHHHHHHHHhcCCCeEEEEEEE-----ecCh---------hHHHHHHH
Q 032462 54 EDHIKA---VAPPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILLGYE-----IRST---------SVHEQMLQ 113 (140)
Q Consensus 54 ~~~~~~---~~~~~D~IlasDviY~~---~~~~~L~~tl~~ll~~~~~~~~~~~-----~R~~---------~~~~~F~~ 113 (140)
..+.-. ....||.|+-+ |.= ..+-..+.||.++++|+| +||-.. .... -+.++...
T Consensus 153 F~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~ 228 (270)
T PF07942_consen 153 FLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGG-YWINFGPLLYHFEPMSIPNEMSVELSLEEIKE 228 (270)
T ss_pred cEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCC-EEEecCCccccCCCCCCCCCcccCCCHHHHHH
Confidence 432211 24789999998 442 346678889999999988 444221 1111 12455566
Q ss_pred HHH-hcCeEEe
Q 032462 114 MWK-SNFNVKL 123 (140)
Q Consensus 114 ~~~-~~f~v~~ 123 (140)
.++ .||+++.
T Consensus 229 l~~~~GF~~~~ 239 (270)
T PF07942_consen 229 LIEKLGFEIEK 239 (270)
T ss_pred HHHHCCCEEEE
Confidence 664 5999765
No 209
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=47.03 E-value=24 Score=27.97 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=24.1
Q ss_pred cCCC-EEEEecc-hhHHHHHHHHHHHhhc
Q 032462 3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTS 29 (140)
Q Consensus 3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~ 29 (140)
..|| .|.+-|. |..++-||+|++.|..
T Consensus 215 ~agAk~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 215 TAGAKTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred ccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence 5788 7999997 9999999999999965
No 210
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=46.89 E-value=37 Score=24.80 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=35.3
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
+..|++|++++. ++.+..+...++.+ ...+.+...|..+...... ...++|.||.+=-
T Consensus 32 ~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 32 AGAGAHVLVNGRNAATLEAAVAALRAA-------------GGAAEALAFDIADEEAVAAAFARIDAEHGRLDILVNNVG 97 (256)
T ss_pred HHcCCeEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 457899999997 44444444444322 2356788888887654321 1356888886543
No 211
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N-terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins [].; PDB: 2ZSH_B 2ZSI_B.
Probab=46.53 E-value=5.6 Score=24.44 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=15.3
Q ss_pred CccCCCEEEEecchhHHHHHH
Q 032462 1 MALLGCNVITTDQIEVLPLLK 21 (140)
Q Consensus 1 lA~lGa~Vv~TD~~~vl~~l~ 21 (140)
||-+|.+|--+|+.++.+.|+
T Consensus 4 lA~lGYkVrsSdmadVAQkLE 24 (73)
T PF12041_consen 4 LAVLGYKVRSSDMADVAQKLE 24 (73)
T ss_dssp HHTTT-B-BGGGHHHHHHHHH
T ss_pred hhhhcccccchHHHHHHHHHH
Confidence 578999999999988766554
No 212
>PRK06125 short chain dehydrogenase; Provisional
Probab=45.06 E-value=44 Score=24.53 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=34.7
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc---cCCCccEEEEeecc
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA---VAPPFDYIIGTDVV 73 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~---~~~~~D~IlasDvi 73 (140)
|+..|++|++++. ++-+..+...+.... ...+.+...|..+...... ...+.|++|-+=-+
T Consensus 27 l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~~~~~~~~~g~id~lv~~ag~ 91 (259)
T PRK06125 27 FAAEGCHLHLVARDADALEALAADLRAAH------------GVDVAVHALDLSSPEAREQLAAEAGDIDILVNNAGA 91 (259)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence 3567899999996 444444444443211 2356677777776543321 13567877765433
No 213
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=45.01 E-value=15 Score=26.16 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=32.2
Q ss_pred ceEEEEe-ecCCCcc----ccccCCCccEEEEeecccCccchHHHHHHHHHhc
Q 032462 43 SIQAVEL-DWGNEDH----IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS 90 (140)
Q Consensus 43 ~v~~~~L-dWg~~~~----~~~~~~~~D~IlasDviY~~~~~~~L~~tl~~ll 90 (140)
.+.+... +|++.++ ....-..-|+|+|| .||.++++.++...|...-
T Consensus 32 ~l~~~~~~el~~~~~~~~~~~~aia~ADii~~s-mlF~ed~v~~l~~~L~~~r 83 (164)
T PF11965_consen 32 ELSVFAAAELERDPEALEECEAAIARADIIFGS-MLFIEDHVRPLLPALEARR 83 (164)
T ss_pred EEEEEeHHHhhcChHHHHHHHHHHHhCCEEEee-hhhhHHHHHHHHHHHHHHH
Confidence 4444443 4955532 12234678999998 7899999999999998664
No 214
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=43.78 E-value=1.6e+02 Score=23.06 Aligned_cols=80 Identities=11% Similarity=0.137 Sum_probs=51.2
Q ss_pred CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecC--CCccccccCCCccEEEEeecccCccchHH
Q 032462 5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG--NEDHIKAVAPPFDYIIGTDVVYAEHLLEP 81 (140)
Q Consensus 5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg--~~~~~~~~~~~~D~IlasDviY~~~~~~~ 81 (140)
+.+|++.|. ++.|.--++-... .. +. ..+ .+.|- +.+..|.....||...-|==|=+=..++.
T Consensus 130 ~~~V~v~Dinp~mL~vgkqRa~~-~~-l~-------~~~-----~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k 195 (296)
T KOG1540|consen 130 ESKVTVLDINPHMLAVGKQRAKK-RP-LK-------ASS-----RVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK 195 (296)
T ss_pred CceEEEEeCCHHHHHHHHHHHhh-cC-CC-------cCC-----ceEEEeCCcccCCCCCCcceeEEEecceecCCCHHH
Confidence 368999998 8887655433332 11 10 111 23443 34444555678897777666666667777
Q ss_pred HHHHHHHhcCCCeEEEE
Q 032462 82 LLQTIFALSGPKTTILL 98 (140)
Q Consensus 82 L~~tl~~ll~~~~~~~~ 98 (140)
-++...+.|+|+|++++
T Consensus 196 ~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 196 ALREAYRVLKPGGRFSC 212 (296)
T ss_pred HHHHHHHhcCCCcEEEE
Confidence 88888889999998863
No 215
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=43.71 E-value=28 Score=25.15 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=34.7
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeecc
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV 73 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDvi 73 (140)
+..|++|++++. ++-+..+...+... ...+.+...|+.+.+.... ...++|+|+-+=-.
T Consensus 27 ~~~g~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 27 AADGAEVIVVDICGDDAAATAELVEAA-------------GGKARARQVDVRDRAALKAAVAAGVEDFGRLDILVANAGI 93 (251)
T ss_pred HHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 456888888886 33333333333211 2347788889988754321 12478887766544
Q ss_pred cC
Q 032462 74 YA 75 (140)
Q Consensus 74 Y~ 75 (140)
+.
T Consensus 94 ~~ 95 (251)
T PRK12826 94 FP 95 (251)
T ss_pred CC
Confidence 43
No 216
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=43.55 E-value=66 Score=26.17 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=54.5
Q ss_pred ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEee---cccCcc
Q 032462 2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD---VVYAEH 77 (140)
Q Consensus 2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasD---viY~~~ 77 (140)
|..|| +|.+-.-.++-+..|.=|+-|.. ..++.+.+ |+.++. .++.+.|+||--- .+|++.
T Consensus 196 aqAGA~~vYAvEAS~MAqyA~~Lv~~N~~-----------~~rItVI~---GKiEdi-eLPEk~DviISEPMG~mL~NER 260 (517)
T KOG1500|consen 196 AQAGAKKVYAVEASEMAQYARKLVASNNL-----------ADRITVIP---GKIEDI-ELPEKVDVIISEPMGYMLVNER 260 (517)
T ss_pred HHhCcceEEEEehhHHHHHHHHHHhcCCc-----------cceEEEcc---Cccccc-cCchhccEEEeccchhhhhhHH
Confidence 45788 89999888888888877777743 34566655 333333 2467899998543 566777
Q ss_pred chHHHHHHHHHhcCCCeEEE
Q 032462 78 LLEPLLQTIFALSGPKTTIL 97 (140)
Q Consensus 78 ~~~~L~~tl~~ll~~~~~~~ 97 (140)
..+.-+.+= +.++|+|..+
T Consensus 261 MLEsYl~Ar-k~l~P~GkMf 279 (517)
T KOG1500|consen 261 MLESYLHAR-KWLKPNGKMF 279 (517)
T ss_pred HHHHHHHHH-hhcCCCCccc
Confidence 777766654 6778888775
No 217
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=42.48 E-value=11 Score=26.26 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=12.5
Q ss_pred CCCccEEEEeeccc
Q 032462 61 APPFDYIIGTDVVY 74 (140)
Q Consensus 61 ~~~~D~IlasDviY 74 (140)
..++|++||+|..|
T Consensus 113 ~~~iDiLIG~D~~~ 126 (164)
T PF05585_consen 113 SSPIDILIGADYFW 126 (164)
T ss_pred CCCCeEEEccchHH
Confidence 57899999999987
No 218
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=41.96 E-value=99 Score=25.64 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=44.1
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecc----cCccchHH
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV----YAEHLLEP 81 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi----Y~~~~~~~ 81 (140)
+|++-+. +.....+++-+..|+- ...|++..=|=.+-+ ...++|+|| |.++ +++ +.+.
T Consensus 216 ~VyAVEkn~~A~~~l~~~v~~n~w-----------~~~V~vi~~d~r~v~----lpekvDIIV-SElLGsfg~nE-l~pE 278 (448)
T PF05185_consen 216 KVYAVEKNPNAVVTLQKRVNANGW-----------GDKVTVIHGDMREVE----LPEKVDIIV-SELLGSFGDNE-LSPE 278 (448)
T ss_dssp EEEEEESSTHHHHHHHHHHHHTTT-----------TTTEEEEES-TTTSC----HSS-EEEEE-E---BTTBTTT-SHHH
T ss_pred EEEEEcCCHhHHHHHHHHHHhcCC-----------CCeEEEEeCcccCCC----CCCceeEEE-EeccCCccccc-cCHH
Confidence 8999997 6667777766677764 356777663333222 245899886 3333 444 6666
Q ss_pred HHHHHHHhcCCCeEE
Q 032462 82 LLQTIFALSGPKTTI 96 (140)
Q Consensus 82 L~~tl~~ll~~~~~~ 96 (140)
.+...+++++|+|.+
T Consensus 279 ~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 279 CLDAADRFLKPDGIM 293 (448)
T ss_dssp HHHHGGGGEEEEEEE
T ss_pred HHHHHHhhcCCCCEE
Confidence 677788888866543
No 219
>PRK08251 short chain dehydrogenase; Provisional
Probab=41.71 E-value=55 Score=23.68 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=35.7
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
|+..|++|++++. ++-++.+...+.... ....+.+...|..+.+.... ...+.|+|+-+
T Consensus 22 l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ 88 (248)
T PRK08251 22 FAAKGRDLALCARRTDRLEELKAELLARY-----------PGIKVAVAALDVNDHDQVFEVFAEFRDELGGLDRVIVN 88 (248)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhhC-----------CCceEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4567899999986 555554544443221 13567888889887754321 23567877654
No 220
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=41.36 E-value=18 Score=24.16 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=27.0
Q ss_pred CccEEEEeecccC------ccchHHHHHHHHHhcCCCeEEEEEEE
Q 032462 63 PFDYIIGTDVVYA------EHLLEPLLQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 63 ~~D~IlasDviY~------~~~~~~L~~tl~~ll~~~~~~~~~~~ 101 (140)
+||+|+|=-|.=. ++-+..+++.+..++.|+|.+++-.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 4788888777533 44566788888888999999988554
No 221
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=41.19 E-value=83 Score=24.87 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=50.8
Q ss_pred EEEEecchh-HHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH-
Q 032462 7 NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ- 84 (140)
Q Consensus 7 ~Vv~TD~~~-vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~- 84 (140)
+|.+-|.++ ++.++.+=++.-+ -.++++..+|-.++-+ .....+||+++. |-.| -++.|-.
T Consensus 177 ~iaVvDIDERli~fi~k~aee~g------------~~~ie~~~~Dlr~plp-e~~~~kFDvfiT-DPpe---Ti~alk~F 239 (354)
T COG1568 177 RIAVVDIDERLIKFIEKVAEELG------------YNNIEAFVFDLRNPLP-EDLKRKFDVFIT-DPPE---TIKALKLF 239 (354)
T ss_pred eEEEEechHHHHHHHHHHHHHhC------------ccchhheeehhcccCh-HHHHhhCCeeec-Cchh---hHHHHHHH
Confidence 899999965 7788777665533 2567777777777632 235689998763 4333 3333322
Q ss_pred ---HHHHhcCCCeEEEEEEEecChh
Q 032462 85 ---TIFALSGPKTTILLGYEIRSTS 106 (140)
Q Consensus 85 ---tl~~ll~~~~~~~~~~~~R~~~ 106 (140)
-|..|-++++.=|++-+.|...
T Consensus 240 lgRGI~tLkg~~~aGyfgiT~ress 264 (354)
T COG1568 240 LGRGIATLKGEGCAGYFGITRRESS 264 (354)
T ss_pred HhccHHHhcCCCccceEeeeecccc
Confidence 2334445665567777766543
No 222
>PRK05854 short chain dehydrogenase; Provisional
Probab=40.86 E-value=66 Score=24.72 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=34.7
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc-------ccCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-------AVAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~-------~~~~~~D~Ilas 70 (140)
|++.|++|++++. ++-.......+.... ....+.+..+|-.+.+... ....+.|++|..
T Consensus 34 La~~G~~Vil~~R~~~~~~~~~~~l~~~~-----------~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~iD~li~n 100 (313)
T PRK05854 34 LAAAGAEVILPVRNRAKGEAAVAAIRTAV-----------PDAKLSLRALDLSSLASVAALGEQLRAEGRPIHLLINN 100 (313)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHHhC-----------CCCceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEEC
Confidence 5678999999986 433333333333211 1245777888888765432 124578887743
No 223
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=40.41 E-value=54 Score=24.18 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=36.3
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|++++. ++-++.+..++... ...+.....|..+.+.... ...++|+||-+=-
T Consensus 30 l~~~G~~vv~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag 96 (265)
T PRK07097 30 YAKAGATIVFNDINQELVDKGLAAYREL-------------GIEAHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAG 96 (265)
T ss_pred HHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 3567889999886 44444444443321 2356777888877654321 1356898886655
Q ss_pred cc
Q 032462 73 VY 74 (140)
Q Consensus 73 iY 74 (140)
+.
T Consensus 97 ~~ 98 (265)
T PRK07097 97 II 98 (265)
T ss_pred CC
Confidence 43
No 224
>PRK05876 short chain dehydrogenase; Provisional
Probab=39.93 E-value=47 Score=24.95 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=32.3
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
|++.|++|+++|. ++-++.+...+... ...+.+...|..+.+.... ...+.|+||-.
T Consensus 26 La~~G~~Vv~~~r~~~~l~~~~~~l~~~-------------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~li~n 90 (275)
T PRK05876 26 FARRGARVVLGDVDKPGLRQAVNHLRAE-------------GFDVHGVMCDVRHREEVTHLADEAFRLLGHVDVVFSN 90 (275)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4678999999997 33333332222211 2346667778877654321 13467877753
No 225
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=39.69 E-value=51 Score=24.34 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCeEEEEEEEe-cChhHHHHHHHHH-HhcCeEEee
Q 032462 82 LLQTIFALSGPKTTILLGYEI-RSTSVHEQMLQMW-KSNFNVKLV 124 (140)
Q Consensus 82 L~~tl~~ll~~~~~~~~~~~~-R~~~~~~~F~~~~-~~~f~v~~v 124 (140)
.+..|..+++.++.++++... +-.+ ....++.+ ++||.|++|
T Consensus 216 ~~~~i~~~l~~~~~~fvvVGa~HL~G-~~gvl~lLr~~Gy~V~~v 259 (259)
T PF01963_consen 216 WAEKIEELLKEGGTVFVVVGAGHLPG-EDGVLDLLRKKGYTVEPV 259 (259)
T ss_pred HHHHHHHHHhcCCCEEEEEcchhccc-hhhHHHHHHhCCceeecC
Confidence 455565556555333333333 3333 46778888 579999976
No 226
>PRK05867 short chain dehydrogenase; Provisional
Probab=39.52 E-value=52 Score=24.03 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=34.6
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|++++. ++-++.+...+... ..++.....|-.+++.... ...+.|++|-+--
T Consensus 29 l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~ag 95 (253)
T PRK05867 29 YVEAGAQVAIAARHLDALEKLADEIGTS-------------GGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAG 95 (253)
T ss_pred HHHCCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4567999999997 44444444333321 1345666777776654321 1357888876543
Q ss_pred c
Q 032462 73 V 73 (140)
Q Consensus 73 i 73 (140)
+
T Consensus 96 ~ 96 (253)
T PRK05867 96 I 96 (253)
T ss_pred C
Confidence 3
No 227
>PRK07063 short chain dehydrogenase; Provisional
Probab=39.52 E-value=58 Score=23.85 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=35.8
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|+++|. ++-++.+...+.... ...++.+...|-.+.+.... ...++|++|-+--
T Consensus 27 l~~~G~~vv~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 27 FAREGAAVALADLDAALAERAAAAIARDV-----------AGARVLAVPADVTDAASVAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhcc-----------CCceEEEEEccCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence 4667999999997 444444444333210 12456777788877654321 1357888886543
No 228
>PRK06172 short chain dehydrogenase; Provisional
Probab=39.07 E-value=57 Score=23.76 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=35.3
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|++++. ++-++.+...+... ..++.+...|..+.+.... ...++|+|+-+=-
T Consensus 27 l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 27 FAREGAKVVVADRDAAGGEETVALIREA-------------GGEALFVACDVTRDAEVKALVEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3567899999997 44444444444321 2456777888877654321 1357788886543
No 229
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=38.62 E-value=1.7e+02 Score=21.98 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=42.0
Q ss_pred CCCccEEEEeeccc-Cc--cchHHHHHHHHHhcCCCeE-----EEEEEEe------cChhHHHHHHHHHH-hcCeEEe
Q 032462 61 APPFDYIIGTDVVY-AE--HLLEPLLQTIFALSGPKTT-----ILLGYEI------RSTSVHEQMLQMWK-SNFNVKL 123 (140)
Q Consensus 61 ~~~~D~IlasDviY-~~--~~~~~L~~tl~~ll~~~~~-----~~~~~~~------R~~~~~~~F~~~~~-~~f~v~~ 123 (140)
..+||+|..|=|+= -| ......++-..++|.|++. +++.-+. |+. +.+.|.+.++ -||...+
T Consensus 102 ~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~-~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 102 SEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYM-TEERLREIMESLGFTRVK 178 (219)
T ss_pred ccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccccc-CHHHHHHHHHhCCcEEEE
Confidence 57899999998873 34 4556667777778877777 6665553 333 3567777775 5998443
No 230
>PRK07062 short chain dehydrogenase; Provisional
Probab=38.29 E-value=68 Score=23.56 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=35.0
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|++++. ++-+..+...+.... ....+.+...|..+.+.... ...+.|++|-+=-
T Consensus 28 l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 28 LLEAGASVAICGRDEERLASAEARLREKF-----------PGARLLAARCDVLDEADVAAFAAAVEARFGGVDMLVNNAG 96 (265)
T ss_pred HHHCCCeEEEEeCCHHHHHHHHHHHHhhC-----------CCceEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3567999999997 444443333332211 12456777888887654321 2356888776543
No 231
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=38.22 E-value=28 Score=25.23 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=33.7
Q ss_pred CccCCC-EEEEecchhH-HHHHHHHHHHhh--cccccCC------CCCCCCCceEEEEeecCCC---ccccccCCCccEE
Q 032462 1 MALLGC-NVITTDQIEV-LPLLKRNVEWNT--SRISQMN------PGSDLLGSIQAVELDWGNE---DHIKAVAPPFDYI 67 (140)
Q Consensus 1 lA~lGa-~Vv~TD~~~v-l~~l~~Ni~~N~--~~~~~~~------~~~~~~~~v~~~~LdWg~~---~~~~~~~~~~D~I 67 (140)
|++.|. ++++-|.+.+ ..++.+|.-... ...+... .-..-.+.+++....+.-. +..+.....||+|
T Consensus 38 L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvV 117 (198)
T cd01485 38 LVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLV 117 (198)
T ss_pred HHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEE
Confidence 567887 7999997543 334443321111 0000000 0001234566666665432 1112234689999
Q ss_pred EEee
Q 032462 68 IGTD 71 (140)
Q Consensus 68 lasD 71 (140)
|.|+
T Consensus 118 i~~~ 121 (198)
T cd01485 118 IATE 121 (198)
T ss_pred EECC
Confidence 9663
No 232
>PRK07035 short chain dehydrogenase; Provisional
Probab=38.17 E-value=64 Score=23.46 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=32.2
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
|++.|++|+++|. ++-++.+...+... ...+.....|.++...... ...++|+||.+
T Consensus 28 l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ 92 (252)
T PRK07035 28 LAQQGAHVIVSSRKLDGCQAVADAIVAA-------------GGKAEALACHIGEMEQIDALFAHIRERHGRLDILVNN 92 (252)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3567999999997 44444433333211 1345566677776654321 13568988843
No 233
>PRK08643 acetoin reductase; Validated
Probab=37.97 E-value=60 Score=23.65 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=34.6
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEee
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTD 71 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasD 71 (140)
|+..|++|+++|. ++-+.-+...+... ...+.+...|..+++.... ...++|+||-+=
T Consensus 22 l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 87 (256)
T PRK08643 22 LVEDGFKVAIVDYNEETAQAAADKLSKD-------------GGKAIAVKADVSDRDQVFAAVRQVVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4567999999997 44444444444321 1356667778877654221 135688877654
No 234
>PHA01634 hypothetical protein
Probab=37.64 E-value=42 Score=23.37 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=23.5
Q ss_pred ccCCC-EEEEecc-hhHHHHHHHHHHHhhc
Q 032462 2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTS 29 (140)
Q Consensus 2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~ 29 (140)
+..|| +|++-.- +...+.+++|++.|..
T Consensus 47 ~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 47 LLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred hhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 56799 7999887 6788999999999964
No 235
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.12 E-value=67 Score=25.25 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=40.8
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc-------ccCCCccE-EEEee
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-------AVAPPFDY-IIGTD 71 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~-------~~~~~~D~-IlasD 71 (140)
||..|++|+++-. .+-.....+-|... ....++.+..+|=....... ....+.|+ |.-|-
T Consensus 55 La~~Ga~Vv~~~R~~~~~~~~~~~i~~~-----------~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~~ldvLInNAG 123 (314)
T KOG1208|consen 55 LALRGAHVVLACRNEERGEEAKEQIQKG-----------KANQKIRVIQLDLSSLKSVRKFAEEFKKKEGPLDVLINNAG 123 (314)
T ss_pred HHhCCCEEEEEeCCHHHHHHHHHHHHhc-----------CCCCceEEEECCCCCHHHHHHHHHHHHhcCCCccEEEeCcc
Confidence 6889999999997 33322222222221 13578889999988775432 23567774 44567
Q ss_pred cccCcc
Q 032462 72 VVYAEH 77 (140)
Q Consensus 72 viY~~~ 77 (140)
|++.+.
T Consensus 124 V~~~~~ 129 (314)
T KOG1208|consen 124 VMAPPF 129 (314)
T ss_pred cccCCc
Confidence 776654
No 236
>PRK05650 short chain dehydrogenase; Provisional
Probab=36.85 E-value=42 Score=24.84 Aligned_cols=57 Identities=16% Similarity=-0.043 Sum_probs=33.2
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
|+..|++|++++. ++-++.+...+... ...+.+...|..+...... ...++|+||-+
T Consensus 20 l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~lI~~ 84 (270)
T PRK05650 20 WAREGWRLALADVNEEGGEETLKLLREA-------------GGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVIVNN 84 (270)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4567999999997 33343333333221 2345677778877654321 13578877765
No 237
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.59 E-value=35 Score=25.85 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=35.8
Q ss_pred CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462 61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 105 (140)
Q Consensus 61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~ 105 (140)
..-||.-++-| |.++.+...+..|.+++..++.||.....|..
T Consensus 37 GDifd~w~g~~--~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Df 79 (237)
T COG2908 37 GDIFDGWIGDD--EPPQLHRQVAQKLLRLARKGTRVYYIHGNHDF 79 (237)
T ss_pred chhhhhhhcCC--cccHHHHHHHHHHHHHHhcCCeEEEecCchHH
Confidence 34566667777 88889999999999999999999999888874
No 238
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=35.56 E-value=1.1e+02 Score=22.69 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=29.3
Q ss_pred cEEEEee----cc----cCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHH
Q 032462 65 DYIIGTD----VV----YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM 114 (140)
Q Consensus 65 D~IlasD----vi----Y~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~ 114 (140)
+++|++| ++ ++....+.+..+++++-+.+..+.++ +-|.......+.+.
T Consensus 1 ~~li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~a-TGR~~~~~~~~~~~ 57 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYS-TGRSPHSYKELQKQ 57 (249)
T ss_pred CeEEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEE-cCCCHHHHHHHHhc
Confidence 3688888 55 45455677777777766555455455 44665444455443
No 239
>PRK07102 short chain dehydrogenase; Provisional
Probab=35.51 E-value=75 Score=22.96 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=30.6
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc----cCCCccEEEE
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA----VAPPFDYIIG 69 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~----~~~~~D~Ila 69 (140)
|+..|++|+++|. ++-.+.+..++..+. ..++.+...|=.+...... ...++|+++.
T Consensus 21 l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~ 82 (243)
T PRK07102 21 YAAAGARLYLAARDVERLERLADDLRARG------------AVAVSTHELDILDTASHAAFLDSLPALPDIVLI 82 (243)
T ss_pred HHhcCCEEEEEeCCHHHHHHHHHHHHHhc------------CCeEEEEecCCCChHHHHHHHHHHhhcCCEEEE
Confidence 3567999999996 443333333333221 2356666666655443221 1235687774
No 240
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=34.84 E-value=44 Score=25.32 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=46.8
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcc-cccC------------CC-----------------CCCCCCceEEEEeecCCCc
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSR-ISQM------------NP-----------------GSDLLGSIQAVELDWGNED 55 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~-~~~~------------~~-----------------~~~~~~~v~~~~LdWg~~~ 55 (140)
+|+.||. ++.|++.++|+.+=... +... .| .........++.-|-.++.
T Consensus 79 ~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~ 158 (246)
T PF11599_consen 79 RVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPS 158 (246)
T ss_dssp EEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HH
T ss_pred hHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCc
Confidence 7999998 78999999999753221 1110 00 0012233556664333322
Q ss_pred ccc--ccCCCccEEEEeecccCcc-------c---hHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462 56 HIK--AVAPPFDYIIGTDVVYAEH-------L---LEPLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 56 ~~~--~~~~~~D~IlasDviY~~~-------~---~~~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
... .....+|+|| +|+=|.+- . +..+++.|...+.++++|-++.+.|.
T Consensus 159 ~~~~~~~~~~~diVi-TDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~~k~~K 218 (246)
T PF11599_consen 159 PLAVLDAGFTPDIVI-TDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVSDKGRK 218 (246)
T ss_dssp HHHHHHTT---SEEE-EE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEEEESSSS
T ss_pred hhhhhccCCCCCEEE-ecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEEecCCcc
Confidence 211 1234457665 79999752 2 34466666666755666666555554
No 241
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=34.77 E-value=64 Score=24.15 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=35.0
Q ss_pred CccCCC-EEEEecchhH-HHHHHHHHHHhhcccccCC--------CCCCCCCceEEEEeecCCCccccccCCCccEEEEe
Q 032462 1 MALLGC-NVITTDQIEV-LPLLKRNVEWNTSRISQMN--------PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa-~Vv~TD~~~v-l~~l~~Ni~~N~~~~~~~~--------~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas 70 (140)
||+.|. ++++-|.+.+ ..++-+++-.....++... ..-.+..++.+..-.|............||+||.|
T Consensus 30 Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~~~~~~~l~~~~~D~Vvda 109 (231)
T cd00755 30 LARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDA 109 (231)
T ss_pred HHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeecCHhHHHHHhcCCCCEEEEc
Confidence 578897 9999998553 3455444432211111000 00012345555555565322112224569999877
No 242
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=34.38 E-value=1.7e+02 Score=20.72 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=46.5
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--------
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------- 77 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-------- 77 (140)
+++.+|. +..+...+.|++..+. ...+.+...|..+-+ .....+|+| .+|.=|...
T Consensus 63 ~~~g~Di~~~~v~~a~~N~~~ag~-----------~~~i~~~~~D~~~l~---~~~~~~d~I-vtnPPyG~r~~~~~~~~ 127 (179)
T PF01170_consen 63 KIIGSDIDPKAVRGARENLKAAGV-----------EDYIDFIQWDARELP---LPDGSVDAI-VTNPPYGRRLGSKKDLE 127 (179)
T ss_dssp -EEEEESSHHHHHHHHHHHHHTT------------CGGEEEEE--GGGGG---GTTSBSCEE-EEE--STTSHCHHHHHH
T ss_pred cEEecCCCHHHHHHHHHHHHhccc-----------CCceEEEecchhhcc---cccCCCCEE-EECcchhhhccCHHHHH
Confidence 4789998 7899999999987654 244555554444332 224567755 468878742
Q ss_pred -chHHHHHHHHHhcCCCeEEEEEEEec
Q 032462 78 -LLEPLLQTIFALSGPKTTILLGYEIR 103 (140)
Q Consensus 78 -~~~~L~~tl~~ll~~~~~~~~~~~~R 103 (140)
+...+++.+++.+.+ ..+++....+
T Consensus 128 ~ly~~~~~~~~~~l~~-~~v~l~~~~~ 153 (179)
T PF01170_consen 128 KLYRQFLRELKRVLKP-RAVFLTTSNR 153 (179)
T ss_dssp HHHHHHHHHHHCHSTT-CEEEEEESCC
T ss_pred HHHHHHHHHHHHHCCC-CEEEEEECCH
Confidence 334455555666666 5555554444
No 243
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=33.98 E-value=23 Score=28.64 Aligned_cols=31 Identities=23% Similarity=0.135 Sum_probs=22.0
Q ss_pred ccCCCEEEEecchh-HHH---HHHHHHHHhhcccc
Q 032462 2 ALLGCNVITTDQIE-VLP---LLKRNVEWNTSRIS 32 (140)
Q Consensus 2 A~lGa~Vv~TD~~~-vl~---~l~~Ni~~N~~~~~ 32 (140)
|..||-|+=||.+- ++- -...||..|..+.+
T Consensus 227 a~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg 261 (421)
T KOG2671|consen 227 AHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYG 261 (421)
T ss_pred hhhcceeeccccchheeecccCCCcchhHhHHHhC
Confidence 56899999999854 332 44567888877664
No 244
>PRK08339 short chain dehydrogenase; Provisional
Probab=33.94 E-value=86 Score=23.24 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=32.5
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~------~~~~~D~Ilas 70 (140)
|+..|++|+++|. ++-+..+...+.... ..++.+...|=.+++.... ...++|+++.+
T Consensus 28 l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~lv~n 92 (263)
T PRK08339 28 LARAGADVILLSRNEENLKKAREKIKSES------------NVDVSYIVADLTKREDLERTVKELKNIGEPDIFFFS 92 (263)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 4668999999997 444444444443211 1345666666666543221 12467877654
No 245
>PRK07831 short chain dehydrogenase; Provisional
Probab=33.04 E-value=86 Score=23.00 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=34.9
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|+++|. ++-++.....++.+.. ..++.....|-.+.+.... ...+.|++|.+=-
T Consensus 38 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 38 ALEEGARVVISDIHERRLGETADELAAELG-----------LGRVEAVVCDVTSEAQVDALIDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHHhcC-----------CceEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3567999999986 4444433333332211 1356667777776543321 1257888776665
Q ss_pred c
Q 032462 73 V 73 (140)
Q Consensus 73 i 73 (140)
+
T Consensus 107 ~ 107 (262)
T PRK07831 107 L 107 (262)
T ss_pred C
Confidence 4
No 246
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=32.83 E-value=58 Score=20.56 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=25.4
Q ss_pred CCeEEEEEEEecChhHHHHHHHHHH-hcCeEEeecC
Q 032462 92 PKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 126 (140)
Q Consensus 92 ~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v~~ 126 (140)
..+.|+++.+....+..+.|.+.++ .|+.+..+..
T Consensus 48 ~~a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dls~ 83 (91)
T PF00585_consen 48 DFARVLVGIEVPDAEDLEELIERLKALGYPYEDLSD 83 (91)
T ss_dssp SCSEEEEEEE-SSTHHHHHHHHHHTSSS-EEECTTT
T ss_pred CeeeEEEEEEeCCHHHHHHHHHHHHHcCCCeEECCC
Confidence 4688999999887765688999994 6888876654
No 247
>PRK06949 short chain dehydrogenase; Provisional
Probab=32.57 E-value=65 Score=23.41 Aligned_cols=60 Identities=28% Similarity=0.379 Sum_probs=35.3
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|++.|++|++++. ++-++.+...++.. ...+.+...|..+.+.... ...++|+||-+--
T Consensus 29 l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 29 LAQAGAKVVLASRRVERLKELRAEIEAE-------------GGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3567999999986 55455444443221 1346677778776543321 1346888877554
Q ss_pred c
Q 032462 73 V 73 (140)
Q Consensus 73 i 73 (140)
+
T Consensus 96 ~ 96 (258)
T PRK06949 96 V 96 (258)
T ss_pred C
Confidence 3
No 248
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.41 E-value=93 Score=23.68 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=18.9
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHH
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEW 26 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~ 26 (140)
||..|.+|++-|. ++.++.++.+++.
T Consensus 22 la~~G~~V~l~d~~~~~l~~~~~~~~~ 48 (287)
T PRK08293 22 TAFHGFDVTIYDISDEALEKAKERIAK 48 (287)
T ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3567889999997 6677776666543
No 249
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=32.30 E-value=1.1e+02 Score=23.42 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=40.6
Q ss_pred CCccEEEEeecccCc----cchHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHH--HhcCeEEe
Q 032462 62 PPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMW--KSNFNVKL 123 (140)
Q Consensus 62 ~~~D~IlasDviY~~----~~~~~L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~--~~~f~v~~ 123 (140)
.+||+|+.+=|+=.- +....-++-+..|++|+|.++++.-.+.. ...+.|++.+ +.||.++.
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIED 236 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEe
Confidence 359999988776432 33444555555667899988776655432 1245777665 46999887
Q ss_pred ec
Q 032462 124 VP 125 (140)
Q Consensus 124 v~ 125 (140)
..
T Consensus 237 ~~ 238 (256)
T PF01234_consen 237 LE 238 (256)
T ss_dssp EE
T ss_pred cc
Confidence 66
No 250
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=32.19 E-value=83 Score=23.30 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=31.6
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
|+..|++|+++|. ++-++.+...+... ..++.....|..+...... ...++|+||.+
T Consensus 30 l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~ 94 (278)
T PRK08277 30 LARAGAKVAILDRNQEKAEAVVAEIKAA-------------GGEALAVKADVLDKESLEQARQQILEDFGPCDILING 94 (278)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4567899999997 44343333333211 1345666777766543221 13578887753
No 251
>PRK07478 short chain dehydrogenase; Provisional
Probab=31.99 E-value=56 Score=23.82 Aligned_cols=57 Identities=21% Similarity=0.140 Sum_probs=32.3
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
|++.|++|++++. ++-++.+...+... ...+.+...|-.+++.... ...++|++|-+
T Consensus 26 l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ 90 (254)
T PRK07478 26 FAREGAKVVVGARRQAELDQLVAEIRAE-------------GGEAVALAGDVRDEAYAKALVALAVERFGGLDIAFNN 90 (254)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4567999999996 44444443333321 1345666777776653321 13478877643
No 252
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=31.12 E-value=74 Score=24.45 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=10.0
Q ss_pred CccCCC-EEEEecc
Q 032462 1 MALLGC-NVITTDQ 13 (140)
Q Consensus 1 lA~lGa-~Vv~TD~ 13 (140)
|+..|+ +|++.+.
T Consensus 145 La~~G~~~V~I~~R 158 (289)
T PRK12548 145 CALDGAKEITIFNI 158 (289)
T ss_pred HHHCCCCEEEEEeC
Confidence 456898 5999986
No 253
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=30.83 E-value=87 Score=22.97 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=31.9
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEE
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIG 69 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ila 69 (140)
|+..|++|++++. ++-++.+...+... +.+.....|..+.+.... ...++|+||-
T Consensus 20 l~~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~ 82 (259)
T PRK08340 20 LLKKGARVVISSRNEENLEKALKELKEY--------------GEVYAVKADLSDKDDLKNLVKEAWELLGGIDALVW 82 (259)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhc--------------CCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4567999999997 44444333333211 245566777776553321 2357888774
No 254
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=30.69 E-value=51 Score=23.46 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=20.3
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhc
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTS 29 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~ 29 (140)
|+.|.+|++.|. ++.++..++.++.+..
T Consensus 19 a~~G~~V~l~d~~~~~l~~~~~~i~~~l~ 47 (180)
T PF02737_consen 19 ARAGYEVTLYDRSPEALERARKRIERLLD 47 (180)
T ss_dssp HHTTSEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred HhCCCcEEEEECChHHHHhhhhHHHHHHh
Confidence 567999999997 7777777777666443
No 255
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.49 E-value=61 Score=23.27 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=32.9
Q ss_pred ccCCCEEEEe-cc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEee
Q 032462 2 ALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTD 71 (140)
Q Consensus 2 A~lGa~Vv~T-D~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasD 71 (140)
+..|++|+++ +. ++-+..+...+... ...+.+...|..++..... ...++|+||-+-
T Consensus 26 ~~~g~~v~~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 91 (247)
T PRK05565 26 AKEGAKVVIAYDINEEAAQELLEEIKEE-------------GGDAIAVKADVSSEEDVENLVEQIVEKFGKIDILVNNA 91 (247)
T ss_pred HHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 4568888887 75 43333333333221 2457788888887764321 124788887654
No 256
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=30.27 E-value=1.1e+02 Score=24.11 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=32.8
Q ss_pred CCccEEEEeecccCccchHHHHHHHHHh---cCCCeEEEEEEEecChhHHHHHHHHHHhcC
Q 032462 62 PPFDYIIGTDVVYAEHLLEPLLQTIFAL---SGPKTTILLGYEIRSTSVHEQMLQMWKSNF 119 (140)
Q Consensus 62 ~~~D~IlasDviY~~~~~~~L~~tl~~l---l~~~~~~~~~~~~R~~~~~~~F~~~~~~~f 119 (140)
..+|.|| +|.+..-.-+-..|.++ +.|++.++++-+.|.. ..+..+++++..
T Consensus 36 ~~~d~~l----~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g--~~s~~k~l~~~~ 90 (300)
T COG2813 36 DDFDAVL----LYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKRDG--VRSAEKMLEKYG 90 (300)
T ss_pred CCCCEEE----EEccCchHHHHHHHHHHHhhCCCCCeEEEEecccch--HHHHHHHHHHhc
Confidence 3677775 67776555544444444 4689999999888874 345555554433
No 257
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=30.23 E-value=54 Score=23.30 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=18.6
Q ss_pred CCCccEEEEeecccCccchHHHHHHHHHh
Q 032462 61 APPFDYIIGTDVVYAEHLLEPLLQTIFAL 89 (140)
Q Consensus 61 ~~~~D~IlasDviY~~~~~~~L~~tl~~l 89 (140)
...||+|+++.++..-.....+++.+.+.
T Consensus 73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~ 101 (194)
T TIGR02081 73 DKSFDYVILSQTLQATRNPEEILDEMLRV 101 (194)
T ss_pred CCCcCEEEEhhHhHcCcCHHHHHHHHHHh
Confidence 46799999999986544444444444333
No 258
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=29.99 E-value=1.4e+02 Score=23.78 Aligned_cols=40 Identities=25% Similarity=0.169 Sum_probs=28.0
Q ss_pred CCccEEEEeecccCccc---hHHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462 62 PPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRST 105 (140)
Q Consensus 62 ~~~D~IlasDviY~~~~---~~~L~~tl~~ll~~~~~~~~~~~~R~~ 105 (140)
..+|.|| +|.|.. .+.++..+...+.|++.++++-+.|..
T Consensus 75 ~~~d~~~----~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g 117 (342)
T PRK09489 75 ADCDTLI----YYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRSG 117 (342)
T ss_pred CCCCEEE----EECCCCHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 3567664 677764 445555555667899999999888864
No 259
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=29.87 E-value=88 Score=22.96 Aligned_cols=27 Identities=22% Similarity=0.057 Sum_probs=22.0
Q ss_pred cCCC--EEEEecc-hhHHHHHHHHHHHhhc
Q 032462 3 LLGC--NVITTDQ-IEVLPLLKRNVEWNTS 29 (140)
Q Consensus 3 ~lGa--~Vv~TD~-~~vl~~l~~Ni~~N~~ 29 (140)
..|. +|+++|. +.-+...+.|++.++.
T Consensus 17 ~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l 46 (205)
T PF04816_consen 17 KNGKAPKAIAVDINPGPLEKAKENIAKYGL 46 (205)
T ss_dssp HTTSEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 4564 7999997 7789999999998764
No 260
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=29.79 E-value=86 Score=23.06 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=31.7
Q ss_pred CCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEe
Q 032462 62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 102 (140)
Q Consensus 62 ~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~ 102 (140)
.+-++||.||. |.....+++...++.+......++...+.
T Consensus 149 ~~t~vvIiSDg-~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 149 RRTTVVIISDG-WDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred cCcEEEEEecc-cccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 46789999997 68888999999999998776666554454
No 261
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=29.61 E-value=1.3e+02 Score=22.67 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=19.1
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHH
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVE 25 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~ 25 (140)
+..+.+|++-|. +.+++.+++|+.
T Consensus 48 ~~~~~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 48 AKRAKKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred HHhCCEEEEEECCHHHHHHHHHHhc
Confidence 445679999998 678899888874
No 262
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=29.36 E-value=94 Score=21.09 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=28.1
Q ss_pred CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEE
Q 032462 61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 100 (140)
Q Consensus 61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~ 100 (140)
..+|++||..++.... +...+.|+...+.+|.+++++
T Consensus 51 l~~y~~vi~P~~~~~~---~~~~~~l~~~v~~GG~li~~~ 87 (154)
T cd03143 51 LSGYKLVVLPDLYLLS---DATAAALRAYVENGGTLVAGP 87 (154)
T ss_pred cccCCEEEECchhcCC---HHHHHHHHHHHHCCCEEEEec
Confidence 3589999999998765 467777777777888666644
No 263
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=29.31 E-value=1.6e+02 Score=23.90 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=47.5
Q ss_pred eecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCCCCCcc
Q 032462 70 TDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKESTM 132 (140)
Q Consensus 70 sDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~~l~~~ 132 (140)
-|=.=+|.+.++|.+.++.+..-+++-+++.+.+.....+...+++ +.|++--.++-..|||.
T Consensus 165 lDGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk 228 (414)
T COG2100 165 LDGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPK 228 (414)
T ss_pred ecCCCCCccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHH
Confidence 3445566778888998888887788888999988764456677777 56888777777777764
No 264
>PRK07024 short chain dehydrogenase; Provisional
Probab=29.24 E-value=70 Score=23.44 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=33.5
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEee
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTD 71 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasD 71 (140)
|++.|++|+++|. ++-+..+...+. ...++....+|..+.+.... ...++|+|+.+=
T Consensus 22 l~~~G~~v~~~~r~~~~~~~~~~~~~--------------~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~a 86 (257)
T PRK07024 22 YARQGATLGLVARRTDALQAFAARLP--------------KAARVSVYAADVRDADALAAAAADFIAAHGLPDVVIANA 86 (257)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHhcc--------------cCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 4567999999997 443332222110 01267788888887654321 134679888653
No 265
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.11 E-value=1.4e+02 Score=18.22 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCeEEEEEEEecC-hhHHHHHHHHH-HhcCeEEeecCC
Q 032462 92 PKTTILLGYEIRS-TSVHEQMLQMW-KSNFNVKLVPKA 127 (140)
Q Consensus 92 ~~~~~~~~~~~R~-~~~~~~F~~~~-~~~f~v~~v~~~ 127 (140)
..+.+.+..+.++ .+-.+.+.+.+ +.||.+..+...
T Consensus 38 ~~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~~ 75 (85)
T cd04906 38 KDAHIFVGVSVANGAEELAELLEDLKSAGYEVVDLSDD 75 (85)
T ss_pred CeeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEECCCC
Confidence 3566777777777 65567778888 468888765543
No 266
>PRK05866 short chain dehydrogenase; Provisional
Probab=28.83 E-value=71 Score=24.26 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=34.0
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|++++. ++-++.+...+... ...+.+...|-.+.+.... ...++|+||-+=-
T Consensus 60 La~~G~~Vi~~~R~~~~l~~~~~~l~~~-------------~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG 126 (293)
T PRK05866 60 FARRGATVVAVARREDLLDAVADRITRA-------------GGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAG 126 (293)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3567899999997 44454444444211 1345666777776543221 1347888886543
No 267
>PRK07890 short chain dehydrogenase; Provisional
Probab=28.70 E-value=1.1e+02 Score=22.16 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=34.6
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|+++|. ++-++.+..-+... ..++.....|..+.+.... ...++|+||-+--
T Consensus 25 l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 25 AARAGADVVLAARTAERLDEVAAEIDDL-------------GRRALAVPTDITDEDQCANLVALALERFGRVDALVNNAF 91 (258)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEecCCCCHHHHHHHHHHHHHHcCCccEEEECCc
Confidence 4567999999997 43333333333211 2346777888776654321 1256888877654
Q ss_pred c
Q 032462 73 V 73 (140)
Q Consensus 73 i 73 (140)
.
T Consensus 92 ~ 92 (258)
T PRK07890 92 R 92 (258)
T ss_pred c
Confidence 4
No 268
>PRK07109 short chain dehydrogenase; Provisional
Probab=28.31 E-value=1e+02 Score=23.93 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=35.1
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEee
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTD 71 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasD 71 (140)
|++.|++|++++. ++-++.+...+..- ..++.+...|-.+.+.... ...++|++|-+=
T Consensus 28 la~~G~~Vvl~~R~~~~l~~~~~~l~~~-------------g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD~lInnA 93 (334)
T PRK07109 28 FARRGAKVVLLARGEEGLEALAAEIRAA-------------GGEALAVVADVADAEAVQAAADRAEEELGPIDTWVNNA 93 (334)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHc-------------CCcEEEEEecCCCHHHHHHHHHHHHHHCCCCCEEEECC
Confidence 4568999999997 55555555444321 2356667777776654321 135789887543
No 269
>PRK05875 short chain dehydrogenase; Provisional
Probab=28.26 E-value=69 Score=23.67 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=32.1
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
+..|++|++++. ++-+..+...+..-. ...++.+...|..+++.... ...++|+||-+
T Consensus 28 ~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~li~~ 93 (276)
T PRK05875 28 VAAGAAVMIVGRNPDKLAAAAEEIEALK-----------GAGAVRYEPADVTDEDQVARAVDAATAWHGRLHGVVHC 93 (276)
T ss_pred HHCCCeEEEEeCCHHHHHHHHHHHHhcc-----------CCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 457889999986 333333333222100 12456777788877654321 12467888754
No 270
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.13 E-value=1e+02 Score=24.09 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=19.1
Q ss_pred ccCCCEEEEecc-hh-------HHHHHHHHHHHhhc
Q 032462 2 ALLGCNVITTDQ-IE-------VLPLLKRNVEWNTS 29 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~-------vl~~l~~Ni~~N~~ 29 (140)
|..|.+|++-|. ++ .++..+.++..+..
T Consensus 10 a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (314)
T PRK08269 10 AFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLA 45 (314)
T ss_pred HhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHH
Confidence 567999999997 53 45556666665543
No 271
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=28.02 E-value=3.1e+02 Score=22.17 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=26.7
Q ss_pred CCCccEEEEeecccCccchHHHHHHHHHhcC-CCeEEEEEEE----ecChhHHHHHHHHH
Q 032462 61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSG-PKTTILLGYE----IRSTSVHEQMLQMW 115 (140)
Q Consensus 61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~-~~~~~~~~~~----~R~~~~~~~F~~~~ 115 (140)
..++|+|+ ||++-.|.-+..|+... +.+ -...+++.-+ .|..+ ...+++.+
T Consensus 268 ~~~vDwvV-cDmve~P~rva~lm~~W--l~~g~cr~aIfnLKlpmk~r~~~-v~~~l~~i 323 (357)
T PRK11760 268 RKNVDWLV-CDMVEKPARVAELMAQW--LVNGWCREAIFNLKLPMKKRYEE-VRQCLELI 323 (357)
T ss_pred CCCCCEEE-EecccCHHHHHHHHHHH--HhcCcccEEEEEEEcCCCCCHHH-HHHHHHHH
Confidence 45788765 79998777555444432 222 1233444333 34443 45666544
No 272
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=28.01 E-value=1.1e+02 Score=22.24 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=30.8
Q ss_pred CccCCCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEE
Q 032462 1 MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIG 69 (140)
Q Consensus 1 lA~lGa~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ila 69 (140)
|+..|++|+++|..+....+...+.. ....+.....|-.+.+.... ...++|+++-
T Consensus 28 l~~~G~~v~~~~r~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~ 90 (260)
T PRK12823 28 AAAEGARVVLVDRSELVHEVAAELRA-------------AGGEALALTADLETYAGAQAAMAAAVEAFGRIDVLIN 90 (260)
T ss_pred HHHCCCEEEEEeCchHHHHHHHHHHh-------------cCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 45679999999974333333333321 12345666777776543221 1356887774
No 273
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.98 E-value=22 Score=24.08 Aligned_cols=28 Identities=18% Similarity=0.314 Sum_probs=17.1
Q ss_pred CccEEEEeecccCccchHHHHHHHHHhc
Q 032462 63 PFDYIIGTDVVYAEHLLEPLLQTIFALS 90 (140)
Q Consensus 63 ~~D~IlasDviY~~~~~~~L~~tl~~ll 90 (140)
..-+=-|+|.||.=...+.|...|-.+.
T Consensus 64 ~~~iY~~A~lIYSiRpppEl~~~ildva 91 (129)
T COG1255 64 NISIYEGADLIYSIRPPPELQSAILDVA 91 (129)
T ss_pred cHHHhhCccceeecCCCHHHHHHHHHHH
Confidence 3445568999998555555555554444
No 274
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=27.75 E-value=31 Score=26.15 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.5
Q ss_pred cEEEEeecccCccchHHHHHH
Q 032462 65 DYIIGTDVVYAEHLLEPLLQT 85 (140)
Q Consensus 65 D~IlasDviY~~~~~~~L~~t 85 (140)
=+|+-||.+|.++.++-|+++
T Consensus 100 fii~~sD~vye~~~~e~l~~a 120 (239)
T COG1213 100 FILVMSDHVYEPSILERLLEA 120 (239)
T ss_pred EEEEeCCEeecHHHHHHHHhC
Confidence 478899999999999998884
No 275
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.30 E-value=99 Score=22.24 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=34.4
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeecc
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV 73 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDvi 73 (140)
+..|++|++++. ++-+..+..++.. ...+.+...|..+.+.... ...++|+||-+--+
T Consensus 26 ~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 26 AAEGARVVVTDRNEEAAERVAAEILA--------------GGRAIAVAADVSDEADVEAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred HHCCCEEEEEeCCHHHHHHHHHHHhc--------------CCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 456889999997 4444444443322 1346677778777654321 13468988876543
No 276
>PRK06138 short chain dehydrogenase; Provisional
Probab=27.17 E-value=70 Score=23.09 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=34.0
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|++++. ++-+.....++. . ..++.....|..+++.... ...++|+|+-+=-
T Consensus 25 l~~~G~~v~~~~r~~~~~~~~~~~~~---~-----------~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~vi~~ag 90 (252)
T PRK06138 25 FAREGARVVVADRDAEAAERVAAAIA---A-----------GGRAFARQGDVGSAEAVEALVDFVAARWGRLDVLVNNAG 90 (252)
T ss_pred HHHCCCeEEEecCCHHHHHHHHHHHh---c-----------CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3456888888886 433333333332 1 2456778888887654321 1257888776544
Q ss_pred c
Q 032462 73 V 73 (140)
Q Consensus 73 i 73 (140)
.
T Consensus 91 ~ 91 (252)
T PRK06138 91 F 91 (252)
T ss_pred C
Confidence 3
No 277
>PRK07576 short chain dehydrogenase; Provisional
Probab=27.10 E-value=1.2e+02 Score=22.46 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=31.1
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEE
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIG 69 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ila 69 (140)
|+..|++|+++|. ++-+.-+...+.. ....+.+..+|..+.+.... ...++|++|.
T Consensus 29 l~~~G~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD~vi~ 92 (264)
T PRK07576 29 FARAGANVAVASRSQEKVDAAVAQLQQ-------------AGPEGLGVSADVRDYAAVEAAFAQIADEFGPIDVLVS 92 (264)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHH-------------hCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3567999999996 4433322222221 01345677778776553321 1356898874
No 278
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=26.99 E-value=1.2e+02 Score=22.08 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=33.8
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|++++. ++-++.+...+..+ ..++.....|..+++.... ...++|.||-+--
T Consensus 32 l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------------~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 32 LGEAGARVVLSARKAEELEEAAAHLEAL-------------GIDALWIAADVADEADIERLAEETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3457888988886 43334333333221 2356677888887654321 1356887776543
No 279
>PRK09186 flagellin modification protein A; Provisional
Probab=26.91 E-value=1.4e+02 Score=21.64 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=33.1
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
|+..|++|++++. ++-++.+...+..... ...+.+...|..+++.... ...+.|+||-+
T Consensus 24 l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~id~vi~~ 90 (256)
T PRK09186 24 ILEAGGIVIAADIDKEALNELLESLGKEFK-----------SKKLSLVELDITDQESLEEFLSKSAEKYGKIDGAVNC 90 (256)
T ss_pred HHHCCCEEEEEecChHHHHHHHHHHHhhcC-----------CCceeEEEecCCCHHHHHHHHHHHHHHcCCccEEEEC
Confidence 3567889999986 4444444444432211 2345556778877654321 13568988854
No 280
>PRK08265 short chain dehydrogenase; Provisional
Probab=26.77 E-value=1.1e+02 Score=22.48 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=32.1
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEee
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTD 71 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasD 71 (140)
|+..|++|+++|. ++-++.+.+-+ ...+.+...|..+.+.... ...+.|++|-+=
T Consensus 26 l~~~G~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~a 88 (261)
T PRK08265 26 LVAAGARVAIVDIDADNGAAVAASL----------------GERARFIATDITDDAAIERAVATVVARFGRVDILVNLA 88 (261)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHh----------------CCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 4567999999997 33222221111 1346677888887764321 135788887653
No 281
>PRK06181 short chain dehydrogenase; Provisional
Probab=26.74 E-value=83 Score=22.99 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=34.1
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeecc
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV 73 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDvi 73 (140)
+..|++|++++. +.-.+.+...+... ...+.+...|-.+.+.... ...++|+||-+=-+
T Consensus 22 ~~~g~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 22 ARAGAQLVLAARNETRLASLAQELADH-------------GGEALVVPTDVSDAEACERLIEAAVARFGGIDILVNNAGI 88 (263)
T ss_pred HHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 457899999997 43333333333221 2356677788877654221 12468888866433
No 282
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=26.62 E-value=1.6e+02 Score=19.58 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=33.5
Q ss_pred CccCCC-EEEEecchhH-HHHHHHHHHHhhcccccCC--------CCCCCCCceEEEEeecCCCccccccCCCccEEEEe
Q 032462 1 MALLGC-NVITTDQIEV-LPLLKRNVEWNTSRISQMN--------PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa-~Vv~TD~~~v-l~~l~~Ni~~N~~~~~~~~--------~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas 70 (140)
|++.|. ++++.|.+.+ ..++.++.-.+...++... ..-.+..+++.....+..... .....++|+||.|
T Consensus 18 L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~~-~~~~~~~diVi~~ 96 (143)
T cd01483 18 LARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISEDNL-DDFLDGVDLVIDA 96 (143)
T ss_pred HHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecChhhH-HHHhcCCCEEEEC
Confidence 567887 8999997543 3455444433222221100 000112344444445543321 2235689988865
No 283
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.44 E-value=32 Score=24.70 Aligned_cols=69 Identities=23% Similarity=0.300 Sum_probs=38.1
Q ss_pred eecccCccchHHH-----HHHHH---HhcCCCeEEEEEEEe---------c----C-------h-----hHHHHHHHHH-
Q 032462 70 TDVVYAEHLLEPL-----LQTIF---ALSGPKTTILLGYEI---------R----S-------T-----SVHEQMLQMW- 115 (140)
Q Consensus 70 sDviY~~~~~~~L-----~~tl~---~ll~~~~~~~~~~~~---------R----~-------~-----~~~~~F~~~~- 115 (140)
+|+||.+..++.| ..+++ .+|+|+|.+-+|.+. + + + .+.+..+..+
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~r~m~n~~m 127 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTMRMMFNGFM 127 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4666766555543 34443 467899988877652 1 1 0 0122222333
Q ss_pred HhcCeEEeecCCCCCcccCCCCC
Q 032462 116 KSNFNVKLVPKAKESTMWGNPLG 138 (140)
Q Consensus 116 ~~~f~v~~v~~~~l~~~~~~~~~ 138 (140)
..+|.+.-...++....|-+++.
T Consensus 128 ~~~~~~kl~e~ee~~g~fle~~~ 150 (185)
T COG4627 128 DAGFVVKLLEYEEELGMFLEEDW 150 (185)
T ss_pred hhhheehhhhHHHHhhhhhhhcc
Confidence 35787777666666666655543
No 284
>PRK06194 hypothetical protein; Provisional
Probab=26.38 E-value=74 Score=23.66 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=31.9
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|+++|. ++.+..+...+.. ....+.+...|-.+.+.... ...++|+|+-+=-
T Consensus 26 l~~~G~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 26 GAALGMKLVLADVQQDALDRAVAELRA-------------QGAEVLGVRTDVSDAAQVEALADAALERFGAVHLLFNNAG 92 (287)
T ss_pred HHHCCCEEEEEeCChHHHHHHHHHHHh-------------cCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3567999999996 3333322222211 12356667777766543321 1346787776543
Q ss_pred c
Q 032462 73 V 73 (140)
Q Consensus 73 i 73 (140)
+
T Consensus 93 ~ 93 (287)
T PRK06194 93 V 93 (287)
T ss_pred C
Confidence 3
No 285
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=26.31 E-value=71 Score=21.52 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecC
Q 032462 80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK 126 (140)
Q Consensus 80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~ 126 (140)
+.+++.|..++++++++ ..|..... .-+.+ +.||.|+++|.
T Consensus 70 ~e~~~~l~~~~~~~~~l-~Tys~a~~-----Vr~~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTL-ATYSSAGA-----VRRALQQAGFEVEKVPG 111 (124)
T ss_dssp HHHHHHHHHHEEEEEEE-EES--BHH-----HHHHHHHCTEEEEEEE-
T ss_pred HHHHHHHHHHhCCCcEE-EEeechHH-----HHHHHHHcCCEEEEcCC
Confidence 67999999999887654 55543321 22334 56999999875
No 286
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.26 E-value=1.6e+02 Score=24.54 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=25.4
Q ss_pred ceEEEEeecCCCcccc----------ccCCCccEEEEeecccCccchHH
Q 032462 43 SIQAVELDWGNEDHIK----------AVAPPFDYIIGTDVVYAEHLLEP 81 (140)
Q Consensus 43 ~v~~~~LdWg~~~~~~----------~~~~~~D~IlasDviY~~~~~~~ 81 (140)
+=+...+||.+..... ..-..+|.||.|| |..-...+
T Consensus 113 nQQllRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSD--Y~KG~L~~ 159 (467)
T COG2870 113 NQQLLRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSD--YAKGVLTN 159 (467)
T ss_pred cceEEEecccccCcchhHHHHHHHHHHHhhcCCEEEEec--cccccchh
Confidence 4456789998765421 1257899999999 77754444
No 287
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=26.22 E-value=83 Score=22.74 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=31.8
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
+..|++|++++. ++-.+.+...+... ..++.....|..+...... ...++|+||.+
T Consensus 25 ~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ 88 (258)
T PRK12429 25 AKEGAKVVIADLNDEAAAAAAEALQKA-------------GGKAIGVAMDVTDEEAINAGIDYAVETFGGVDILVNN 88 (258)
T ss_pred HHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 456888888886 44344333333221 2456777778876654321 12468887753
No 288
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=26.16 E-value=76 Score=26.81 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=37.7
Q ss_pred EEeecCCCccccccCCCccEEEEeecccC---ccchHHHHHHHHHhcCCCeEEEE
Q 032462 47 VELDWGNEDHIKAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILL 98 (140)
Q Consensus 47 ~~LdWg~~~~~~~~~~~~D~IlasDviY~---~~~~~~L~~tl~~ll~~~~~~~~ 98 (140)
..+||.+. ++.-...||+|=|+.+.=. .-.+..++--++++|+|+|.++|
T Consensus 413 ~yhDWCE~--fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 413 VYHDWCEA--FSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred hccchhhc--cCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 45789865 5566788999988876433 23677888888999999999876
No 289
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=26.07 E-value=26 Score=27.33 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=36.4
Q ss_pred CccCCC-EEEEecchhH-HHHHHHHHHHhhcccccCC--------CCCCCCCceEEEEeecCCCccccccCCCccEEEEe
Q 032462 1 MALLGC-NVITTDQIEV-LPLLKRNVEWNTSRISQMN--------PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa-~Vv~TD~~~v-l~~l~~Ni~~N~~~~~~~~--------~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas 70 (140)
||+.|. ++++.|.+.+ +.+|.++.-.....++... ..-.+..++.+..-++.+.. ......||+||.+
T Consensus 18 Lal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~~~--~~f~~~fdvVi~a 95 (291)
T cd01488 18 LALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQDKD--EEFYRQFNIIICG 95 (291)
T ss_pred HHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCchh--HHHhcCCCEEEEC
Confidence 578897 9999998543 4555555433222221100 00012344555555554321 2235689999876
Q ss_pred -ec
Q 032462 71 -DV 72 (140)
Q Consensus 71 -Dv 72 (140)
|=
T Consensus 96 lDn 98 (291)
T cd01488 96 LDS 98 (291)
T ss_pred CCC
Confidence 53
No 290
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=25.98 E-value=74 Score=22.92 Aligned_cols=44 Identities=20% Similarity=0.109 Sum_probs=24.8
Q ss_pred CCCccEEEEeecccCccc----hHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462 61 APPFDYIIGTDVVYAEHL----LEPLLQTIFALSGPKTTILLGYEIRS 104 (140)
Q Consensus 61 ~~~~D~IlasDviY~~~~----~~~L~~tl~~ll~~~~~~~~~~~~R~ 104 (140)
..+||+||-+|+=.+.-+ -+.-++.|+...+.+|-+++.-..+.
T Consensus 65 L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmigG~~s 112 (177)
T PF07090_consen 65 LNRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMIGGPRS 112 (177)
T ss_dssp HCT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE-STTS
T ss_pred HhcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEEeChhh
Confidence 479999999998766543 55666677665544555555544443
No 291
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=25.96 E-value=1.3e+02 Score=21.81 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=33.1
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|+++|. ++-+..+...+... ..++.....|-.+.+.... ...++|+||-+=-
T Consensus 30 l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag 96 (255)
T PRK07523 30 LAQAGAEVILNGRDPAKLAAAAESLKGQ-------------GLSAHALAFDVTDHDAVRAAIDAFEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CceEEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3457899999987 33333333333211 1345666777776653321 1356787776544
Q ss_pred c
Q 032462 73 V 73 (140)
Q Consensus 73 i 73 (140)
+
T Consensus 97 ~ 97 (255)
T PRK07523 97 M 97 (255)
T ss_pred C
Confidence 3
No 292
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=25.74 E-value=34 Score=26.95 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=34.9
Q ss_pred CccCCC-EEEEecchhH-HHHHHHHHHHhhcccccCCC------CCCCCCceEEEEe--ecCCCccccccCCCccEEEEe
Q 032462 1 MALLGC-NVITTDQIEV-LPLLKRNVEWNTSRISQMNP------GSDLLGSIQAVEL--DWGNEDHIKAVAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa-~Vv~TD~~~v-l~~l~~Ni~~N~~~~~~~~~------~~~~~~~v~~~~L--dWg~~~~~~~~~~~~D~Ilas 70 (140)
||+.|. ++++.|.+.+ ..+|.++.-.+...++.... ...-.+.+++..+ ..++..........||+|+.|
T Consensus 18 Lal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~~~~~~~f~~~~DvVv~a 97 (312)
T cd01489 18 LVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNA 97 (312)
T ss_pred HHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCCccchHHHHhcCCEEEEC
Confidence 577897 8999998543 45665554333222211000 0011233444444 444321111234689999988
Q ss_pred e
Q 032462 71 D 71 (140)
Q Consensus 71 D 71 (140)
.
T Consensus 98 ~ 98 (312)
T cd01489 98 L 98 (312)
T ss_pred C
Confidence 5
No 293
>PRK07814 short chain dehydrogenase; Provisional
Probab=25.47 E-value=83 Score=23.18 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=33.5
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
|+..|++|++++. ++-++.+...+.. ....+.+...|..+++.... ...++|+|+-+
T Consensus 30 l~~~G~~Vi~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ 94 (263)
T PRK07814 30 FAEAGADVLIAARTESQLDEVAEQIRA-------------AGRRAHVVAADLAHPEATAGLAGQAVEAFGRLDIVVNN 94 (263)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-------------cCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3567999999997 4444444333321 12356777788877654321 12578988754
No 294
>PHA00911 21 prohead core scaffolding protein and protease
Probab=25.06 E-value=48 Score=24.57 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=19.8
Q ss_pred CCccEEEEeecccCccchHHHHHHHH
Q 032462 62 PPFDYIIGTDVVYAEHLLEPLLQTIF 87 (140)
Q Consensus 62 ~~~D~IlasDviY~~~~~~~L~~tl~ 87 (140)
..|-++.|.|++.+|+.....++-|.
T Consensus 151 d~F~L~~a~DvV~~PSap~AyV~~i~ 176 (212)
T PHA00911 151 EGFKLTVAVDVVWGPSAPDAYVKPIM 176 (212)
T ss_pred CCeEEeeeeeeeeCCCCcceeeehhh
Confidence 45667899999999987766666544
No 295
>PRK06720 hypothetical protein; Provisional
Probab=25.06 E-value=1.6e+02 Score=20.62 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=30.1
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
+..|++|+++|. ++-+......+. .. ...+.+..+|..+...... ...+.|+++.+
T Consensus 37 ~~~G~~V~l~~r~~~~~~~~~~~l~--~~-----------~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~iDilVnn 100 (169)
T PRK06720 37 AKQGAKVIVTDIDQESGQATVEEIT--NL-----------GGEALFVSYDMEKQGDWQRVISITLNAFSRIDMLFQN 100 (169)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHH--hc-----------CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 457889999996 333332222222 10 1345566777776543221 13567877765
No 296
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=25.06 E-value=1.6e+02 Score=22.79 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=30.0
Q ss_pred CCCccEEEEeecccC------ccchHHHHHHHHHhcCCCeEEEEE
Q 032462 61 APPFDYIIGTDVVYA------EHLLEPLLQTIFALSGPKTTILLG 99 (140)
Q Consensus 61 ~~~~D~IlasDviY~------~~~~~~L~~tl~~ll~~~~~~~~~ 99 (140)
.+.||+|+|--+.=+ ++-.--+++-|..|+.|+|..++-
T Consensus 164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 578999999776533 445667888888899999988773
No 297
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=25.01 E-value=1.3e+02 Score=23.08 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=37.8
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-------cccCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-------KAVAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-------~~~~~~~D~Ilas 70 (140)
|+..|++|+++.. .+-|+.|...+.. ..+.+..+|=.+.... +....++|+++--
T Consensus 26 l~~~G~~vvl~aRR~drL~~la~~~~~---------------~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLvNN 88 (246)
T COG4221 26 LAEAGAKVVLAARREERLEALADEIGA---------------GAALALALDVTDRAAVEAAIEALPEEFGRIDILVNN 88 (246)
T ss_pred HHHCCCeEEEEeccHHHHHHHHHhhcc---------------CceEEEeeccCCHHHHHHHHHHHHHhhCcccEEEec
Confidence 4678999999997 7788877655532 3567888888877542 2235677877643
No 298
>PRK12939 short chain dehydrogenase; Provisional
Probab=24.77 E-value=1.2e+02 Score=21.85 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=32.1
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEee
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTD 71 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasD 71 (140)
++.|++|++++. ++-+..+...++. ...++.+...|..+.+.... ...++|.||-+=
T Consensus 28 ~~~G~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 92 (250)
T PRK12939 28 AEAGATVAFNDGLAAEARELAAALEA-------------AGGRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNNA 92 (250)
T ss_pred HHcCCEEEEEeCCHHHHHHHHHHHHh-------------cCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 456888888886 4434433333321 12456777778876654321 125788877553
No 299
>PRK12743 oxidoreductase; Provisional
Probab=24.68 E-value=1.5e+02 Score=21.70 Aligned_cols=58 Identities=14% Similarity=0.005 Sum_probs=33.4
Q ss_pred CccCCCEEEEecc--hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEee
Q 032462 1 MALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTD 71 (140)
Q Consensus 1 lA~lGa~Vv~TD~--~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasD 71 (140)
|+..|++|++++. .+-++.+...+..+ ..++.....|..+...... ...+.|.||.+=
T Consensus 22 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~a 88 (256)
T PRK12743 22 LAQQGFDIGITWHSDEEGAKETAEEVRSH-------------GVRAEIRQLDLSDLPEGAQALDKLIQRLGRIDVLVNNA 88 (256)
T ss_pred HHHCCCEEEEEeCCChHHHHHHHHHHHhc-------------CCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3567999988753 33344443333322 2456777888877654321 235789887654
No 300
>PRK08589 short chain dehydrogenase; Validated
Probab=24.59 E-value=1.5e+02 Score=21.96 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=31.6
Q ss_pred CccCCCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEee
Q 032462 1 MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTD 71 (140)
Q Consensus 1 lA~lGa~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasD 71 (140)
|+..|++|++++..+-+..+...+... ..++.+..+|=.+.+.... ...+.|++|.+=
T Consensus 26 l~~~G~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~A 90 (272)
T PRK08589 26 LAQEGAYVLAVDIAEAVSETVDKIKSN-------------GGKAKAYHVDISDEQQVKDFASEIKEQFGRVDVLFNNA 90 (272)
T ss_pred HHHCCCEEEEEeCcHHHHHHHHHHHhc-------------CCeEEEEEeecCCHHHHHHHHHHHHHHcCCcCEEEECC
Confidence 456799999998753333333333211 1345666777666543221 135678777553
No 301
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=24.08 E-value=3.1e+02 Score=20.42 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=23.1
Q ss_pred CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEE
Q 032462 61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 98 (140)
Q Consensus 61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~ 98 (140)
..++|+||-|==-| ..+..+..++.++++++.++.
T Consensus 57 ~~~~D~iiv~vKs~---~~~~~l~~l~~~l~~~~~iv~ 91 (293)
T TIGR00745 57 LPPADLVIITVKAY---QTEEAAALLLPLIGKNTKVLF 91 (293)
T ss_pred cCCCCEEEEeccch---hHHHHHHHhHhhcCCCCEEEE
Confidence 35789887664333 466777778777777766554
No 302
>PRK06914 short chain dehydrogenase; Provisional
Probab=24.01 E-value=1.5e+02 Score=21.85 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=34.0
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc------cCCCccEEEEee
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA------VAPPFDYIIGTD 71 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~------~~~~~D~IlasD 71 (140)
|+..|++|++++. ++.++.+...+.... ....+.+...|..+++.... ...++|+|+-+=
T Consensus 23 l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~vv~~a 89 (280)
T PRK06914 23 LAKKGYLVIATMRNPEKQENLLSQATQLN-----------LQQNIKVQQLDVTDQNSIHNFQLVLKEIGRIDLLVNNA 89 (280)
T ss_pred HHhCCCEEEEEeCCHHHHHHHHHHHHhcC-----------CCCceeEEecCCCCHHHHHHHHHHHHhcCCeeEEEECC
Confidence 3557899999886 544444433332211 12457777788887654321 124678776653
No 303
>PRK07832 short chain dehydrogenase; Provisional
Probab=23.94 E-value=1.5e+02 Score=21.88 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=31.6
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEee
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTD 71 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasD 71 (140)
|+..|++|++++. ++-++.+...+..- ....+.....|-.+++.... ...+.|+||-+=
T Consensus 20 la~~G~~vv~~~r~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~a 86 (272)
T PRK07832 20 LAAQGAELFLTDRDADGLAQTVADARAL------------GGTVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNIA 86 (272)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhc------------CCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4667999999986 44333333333211 11234455677776543221 135678877544
No 304
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=23.90 E-value=2.4e+02 Score=21.72 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=20.4
Q ss_pred CCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEE
Q 032462 62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 99 (140)
Q Consensus 62 ~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~ 99 (140)
.++|+||-|==-| ..+..+..++.++++++.++..
T Consensus 69 ~~~D~viv~vK~~---~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 69 EPIHRLLLACKAY---DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred cccCEEEEECCHH---hHHHHHHHHHhhCCCCCEEEEE
Confidence 5889886653223 2344555666667777765443
No 305
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=23.59 E-value=91 Score=20.08 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=38.0
Q ss_pred cCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc---c-cC-CCccEEEEeecccCc
Q 032462 3 LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK---A-VA-PPFDYIIGTDVVYAE 76 (140)
Q Consensus 3 ~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~---~-~~-~~~D~IlasDviY~~ 76 (140)
.+|++|++||. ++-++.+++ .+ -...+++.+.+..+ . .. .++|+|+ +-
T Consensus 12 ~~G~~vi~~~~~~~k~~~~~~----~G----------------a~~~~~~~~~~~~~~i~~~~~~~~~d~vi------d~ 65 (130)
T PF00107_consen 12 AMGAKVIATDRSEEKLELAKE----LG----------------ADHVIDYSDDDFVEQIRELTGGRGVDVVI------DC 65 (130)
T ss_dssp HTTSEEEEEESSHHHHHHHHH----TT----------------ESEEEETTTSSHHHHHHHHTTTSSEEEEE------ES
T ss_pred HcCCEEEEEECCHHHHHHHHh----hc----------------ccccccccccccccccccccccccceEEE------Ee
Confidence 36899999998 556666553 11 11235555443111 1 12 3566665 33
Q ss_pred cchHHHHHHHHHhcCCCeEEEE
Q 032462 77 HLLEPLLQTIFALSGPKTTILL 98 (140)
Q Consensus 77 ~~~~~L~~tl~~ll~~~~~~~~ 98 (140)
.-.+..++..-.+++++|++.+
T Consensus 66 ~g~~~~~~~~~~~l~~~G~~v~ 87 (130)
T PF00107_consen 66 VGSGDTLQEAIKLLRPGGRIVV 87 (130)
T ss_dssp SSSHHHHHHHHHHEEEEEEEEE
T ss_pred cCcHHHHHHHHHHhccCCEEEE
Confidence 3335556666667777766654
No 306
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.48 E-value=1.6e+02 Score=16.97 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=20.3
Q ss_pred CeEEEEEEEecChhHHHHHHHHH-HhcCeE
Q 032462 93 KTTILLGYEIRSTSVHEQMLQMW-KSNFNV 121 (140)
Q Consensus 93 ~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v 121 (140)
.+.+.+..+.++.+-.+...+.+ +.||.+
T Consensus 37 ~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 37 EARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 45677777777766567778777 457764
No 307
>PRK08226 short chain dehydrogenase; Provisional
Probab=22.69 E-value=1.5e+02 Score=21.55 Aligned_cols=60 Identities=20% Similarity=0.127 Sum_probs=32.3
Q ss_pred CccCCCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeecc
Q 032462 1 MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV 73 (140)
Q Consensus 1 lA~lGa~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDvi 73 (140)
|+..|++|++++..+-.......+... ...+.....|..+...... ...+.|+||.+=-+
T Consensus 26 l~~~G~~Vv~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 26 FARHGANLILLDISPEIEKLADELCGR-------------GHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHCCCEEEEecCCHHHHHHHHHHHHh-------------CCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 355789999999743221111122111 1345666777777654321 13567887775544
No 308
>PLN02780 ketoreductase/ oxidoreductase
Probab=22.68 E-value=1.5e+02 Score=23.03 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=18.6
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHH
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEW 26 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~ 26 (140)
||+.|++|++++. ++-++.+...++.
T Consensus 73 La~~G~~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 73 LARKGLNLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred HHHCCCCEEEEECCHHHHHHHHHHHHH
Confidence 4678999999997 5556666555543
No 309
>PF12163 HobA: DNA replication regulator; InterPro: IPR021011 This family of proteins is found exclusively in epsilon-proteobacteria. Proteins in this family are approximately 180 amino acids in length. The crystal structure of HobA from Helicobacter pylori has been reported at 1.7A resolution; HobA represents a modified Rossmann fold consisting of a five-stranded parallel beta-sheet (beta1-5) flanked on one side by alpha-2, alpha-3 and alpha-6 helices and alpha-4 and alpha-5 on the other. The alpha-1 helix is extended away from and has minimal interaction with the globular part of the protein. Four monomers interact to form a tetrameric molecule. Four calcium atoms bind to the tetramer and these binding sites may have functional relevance. The closest structural homologue of HobA is a sugar isomerase (SIS) domain containing protein, the phosphoheptose isomerase from Pseudomonas aeruginosa. The SIS proteins share strong sequence homology with DiaA from Escherichia coli; yet, HobA and DiaA share no sequence homology []. HobA is a novel protein essential for initiation of H. pylori chromosome replication. It interacts specifically via DnaA with the oriC-DnaA complex. It is possible that HobA is essential for the correct formation and stabilisation of the orisome by facilitating the spatial positioning of DnaA at oriC [].; PDB: 2UVP_D 2WP0_A.
Probab=22.43 E-value=97 Score=22.51 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH
Q 032462 79 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW 115 (140)
Q Consensus 79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~ 115 (140)
.+.+.++|+++++.++.++++-..|.-= .+-++..+
T Consensus 30 ~pl~a~~l~~il~G~s~iliTD~~R~WF-~~Yil~~I 65 (180)
T PF12163_consen 30 TPLIASALSHILNGGSFILITDEEREWF-EEYILSNI 65 (180)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-GGGHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEeCchhHHH-HHHHHHhc
Confidence 4456689999999878888887777641 23455666
No 310
>PRK08267 short chain dehydrogenase; Provisional
Probab=22.32 E-value=1.5e+02 Score=21.65 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=33.0
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc--------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA--------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~--------~~~~~D~Ilas 70 (140)
|+..|++|++++. ++-++.+...+. ...+.+...|..+...... ...++|+||-+
T Consensus 21 l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ 84 (260)
T PRK08267 21 FAAEGWRVGAYDINEAGLAALAAELG---------------AGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNN 84 (260)
T ss_pred HHHCCCeEEEEeCCHHHHHHHHHHhc---------------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEEC
Confidence 4567999999986 444444433322 1356777888877654321 14578977754
No 311
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=22.14 E-value=77 Score=24.37 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=37.6
Q ss_pred CccCCC-EEEEecchhH-HHHHHHHHHH-------hhcccccC-CCCCCCCCceEEEEeecCCCccccccCCCccEEE
Q 032462 1 MALLGC-NVITTDQIEV-LPLLKRNVEW-------NTSRISQM-NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYII 68 (140)
Q Consensus 1 lA~lGa-~Vv~TD~~~v-l~~l~~Ni~~-------N~~~~~~~-~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Il 68 (140)
||+-|. ++++-|.+++ +.++.+-+-. .+...-.. -..-.+.++|.+...-|..+.........||+||
T Consensus 49 LaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvI 126 (263)
T COG1179 49 LARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVI 126 (263)
T ss_pred HHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEE
Confidence 678887 8999998664 3343332222 21111000 0000235677777778876653334466899998
No 312
>PRK05872 short chain dehydrogenase; Provisional
Probab=21.99 E-value=1.8e+02 Score=22.01 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=33.2
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|++++. ++-++.+.+.+. ....+.....|..+.+.... ...++|+||.+=-
T Consensus 29 l~~~G~~V~~~~r~~~~l~~~~~~l~--------------~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~vI~nAG 94 (296)
T PRK05872 29 LHARGAKLALVDLEEAELAALAAELG--------------GDDRVLTVVADVTDLAAMQAAAEEAVERFGGIDVVVANAG 94 (296)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHhc--------------CCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3567899999986 443333322221 01345556688887654321 1357898886544
Q ss_pred c
Q 032462 73 V 73 (140)
Q Consensus 73 i 73 (140)
+
T Consensus 95 ~ 95 (296)
T PRK05872 95 I 95 (296)
T ss_pred c
Confidence 3
No 313
>PRK07454 short chain dehydrogenase; Provisional
Probab=21.64 E-value=1.9e+02 Score=20.71 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=35.4
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|++++. ++-...+..-+.. ....+.+...|..+.+.... ...+.|+|+-+--
T Consensus 26 l~~~G~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag 92 (241)
T PRK07454 26 FAKAGWDLALVARSQDALEALAAELRS-------------TGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-------------CCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3567899999997 4333333333321 12456777788877654321 1356898887654
Q ss_pred cc
Q 032462 73 VY 74 (140)
Q Consensus 73 iY 74 (140)
+.
T Consensus 93 ~~ 94 (241)
T PRK07454 93 MA 94 (241)
T ss_pred cc
Confidence 43
No 314
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=21.40 E-value=1.3e+02 Score=20.71 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=17.6
Q ss_pred CCCccEEEEee-cccCccchHHHHHHHHHhcCC
Q 032462 61 APPFDYIIGTD-VVYAEHLLEPLLQTIFALSGP 92 (140)
Q Consensus 61 ~~~~D~IlasD-viY~~~~~~~L~~tl~~ll~~ 92 (140)
.+.+|+|||.| .++.. .+.|.+.+..-.+.
T Consensus 62 ~p~~DyIig~~~~~l~~--~~~l~~~v~~~~~~ 92 (138)
T PF04495_consen 62 EPFFDYIIGIDGGLLDD--EDDLFELVEANENK 92 (138)
T ss_dssp -TTTEEEEEETTCE--S--TCHHHHHHHHTTTS
T ss_pred cccccEEEEccceecCC--HHHHHHHHHHcCCC
Confidence 45689999999 45552 35666666554433
No 315
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.27 E-value=1.1e+02 Score=22.56 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=29.8
Q ss_pred CccCCCEEEEecch---hHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462 1 MALLGCNVITTDQI---EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT 70 (140)
Q Consensus 1 lA~lGa~Vv~TD~~---~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas 70 (140)
|++.|++|+++|.. +.++.+...+ ...+.+..+|-.+.+.... ...++|++|.+
T Consensus 29 la~~G~~v~l~~r~~~~~~~~~~~~~~----------------~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~iD~li~n 92 (256)
T PRK07889 29 AQEQGAEVVLTGFGRALRLTERIAKRL----------------PEPAPVLELDVTNEEHLASLADRVREHVDGLDGVVHS 92 (256)
T ss_pred HHHCCCEEEEecCccchhHHHHHHHhc----------------CCCCcEEeCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 45679999999852 2333222211 1134556677776654321 23578877754
No 316
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=21.19 E-value=81 Score=23.16 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=35.0
Q ss_pred CceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEE
Q 032462 42 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 101 (140)
Q Consensus 42 ~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~ 101 (140)
.-+.+.+.|..+.-. ......||+||.|+.+=.-...+.+++- +++-+..++|+++
T Consensus 55 rGv~Viq~Dld~gL~-~f~d~sFD~VIlsqtLQ~~~~P~~vL~E---mlRVgr~~IVsFP 110 (193)
T PF07021_consen 55 RGVSVIQGDLDEGLA-DFPDQSFDYVILSQTLQAVRRPDEVLEE---MLRVGRRAIVSFP 110 (193)
T ss_pred cCCCEEECCHHHhHh-hCCCCCccEEehHhHHHhHhHHHHHHHH---HHHhcCeEEEEec
Confidence 456788888876532 1236899999999998665444444443 3433445556555
No 317
>PRK07774 short chain dehydrogenase; Provisional
Probab=21.02 E-value=1.8e+02 Score=20.91 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=33.4
Q ss_pred CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEeec
Q 032462 1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV 72 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasDv 72 (140)
|+..|++|+++|. ++-+..+...+... ...+.....|..+.+.... ...++|+||-+=-
T Consensus 26 l~~~g~~vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 92 (250)
T PRK07774 26 LAREGASVVVADINAEGAERVAKQIVAD-------------GGTAIAVQVDVSDPDSAKAMADATVSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3567899999997 33334443333211 1244556677766543211 1246898886554
Q ss_pred cc
Q 032462 73 VY 74 (140)
Q Consensus 73 iY 74 (140)
++
T Consensus 93 ~~ 94 (250)
T PRK07774 93 IY 94 (250)
T ss_pred Cc
Confidence 43
No 318
>PRK06114 short chain dehydrogenase; Provisional
Probab=20.89 E-value=1.8e+02 Score=21.20 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=34.6
Q ss_pred CccCCCEEEEecc-h-hHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEee
Q 032462 1 MALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTD 71 (140)
Q Consensus 1 lA~lGa~Vv~TD~-~-~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasD 71 (140)
|+..|++|+++|. + ..+..+...+..- ..++.....|-.+.+.... ...+.|+||-+-
T Consensus 28 l~~~G~~v~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~a 94 (254)
T PRK06114 28 LAQAGADVALFDLRTDDGLAETAEHIEAA-------------GRRAIQIAADVTSKADLRAAVARTEAELGALTLAVNAA 94 (254)
T ss_pred HHHCCCEEEEEeCCcchHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3567899999986 2 2344343333221 1345666777776653321 235689888765
Q ss_pred ccc
Q 032462 72 VVY 74 (140)
Q Consensus 72 viY 74 (140)
-+.
T Consensus 95 g~~ 97 (254)
T PRK06114 95 GIA 97 (254)
T ss_pred CCC
Confidence 544
No 319
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=84 Score=23.60 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcC------------CCeEEEEEEEecChhHHHHHHHHHHhcCeEEeecCC
Q 032462 79 LEPLLQTIFALSG------------PKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA 127 (140)
Q Consensus 79 ~~~L~~tl~~ll~------------~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~~~ 127 (140)
+..|+.++.+-++ .+-++.+....|-+..+.+|.-.+++-|+-.+||..
T Consensus 66 H~~LL~~lDSplnk~~~L~vYIHT~~~~vI~v~p~~R~Prny~RFiGLmeqLlk~~~i~~~ 126 (223)
T COG1756 66 HQCLLTLLDSPLNKEGKLRVYIHTRNDYVIEVNPETRLPRNYNRFIGLMEQLLKKGRIPSN 126 (223)
T ss_pred HHHHHHHhhcccccccceeEEEEecCCEEEEECCCccCCCCHHHHHHHHHHHHhcCCcCCC
Confidence 5667777776653 456677888888887789999888777776666654
No 320
>PRK06940 short chain dehydrogenase; Provisional
Probab=20.64 E-value=2.7e+02 Score=20.76 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=31.3
Q ss_pred CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc------cCCCccEEEEee
Q 032462 4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA------VAPPFDYIIGTD 71 (140)
Q Consensus 4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~------~~~~~D~IlasD 71 (140)
.|++|+++|. ++-++.+...+.. ...++.+..+|-.+.+.... ...++|+||.+=
T Consensus 23 ~G~~Vv~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nA 84 (275)
T PRK06940 23 AGKKVLLADYNEENLEAAAKTLRE-------------AGFDVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTA 84 (275)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHh-------------cCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 5899999997 4433333322221 02356677788877654321 125789877643
No 321
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=20.52 E-value=49 Score=24.85 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=35.7
Q ss_pred CccCCC-EEEEecchhH-HHHHHHHHHHhhcccccCC--------CCCCCCCceEEEEeecCCCccc-cccCCCccEEEE
Q 032462 1 MALLGC-NVITTDQIEV-LPLLKRNVEWNTSRISQMN--------PGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIG 69 (140)
Q Consensus 1 lA~lGa-~Vv~TD~~~v-l~~l~~Ni~~N~~~~~~~~--------~~~~~~~~v~~~~LdWg~~~~~-~~~~~~~D~Ila 69 (140)
||+.|. ++++.|.+.+ ..+|.++.-.+...++... ..-.+..++....-.++..... .....+||+|+.
T Consensus 18 La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~f~~~~DvVi~ 97 (234)
T cd01484 18 LALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVN 97 (234)
T ss_pred HHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCChhhhchHHHHhCCCEEEE
Confidence 577887 8999998653 4566555433222221100 0001223444444455432221 123578999887
Q ss_pred e-ec
Q 032462 70 T-DV 72 (140)
Q Consensus 70 s-Dv 72 (140)
+ |=
T Consensus 98 a~Dn 101 (234)
T cd01484 98 ALDN 101 (234)
T ss_pred CCCC
Confidence 6 53
No 322
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=20.44 E-value=4.1e+02 Score=20.56 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=45.5
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--c--c-chH
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--E--H-LLE 80 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~--~-~~~ 80 (140)
++++-|. +.|+.+.++=+..-... ...+++++..=|=.+- ......+||+||. |+.-. + . .-.
T Consensus 102 ~i~~VEID~~Vi~~ar~~l~~~~~~--------~~dpRv~i~i~Dg~~~--v~~~~~~fDvIi~-D~tdp~gp~~~Lft~ 170 (282)
T COG0421 102 RITMVEIDPAVIELARKYLPEPSGG--------ADDPRVEIIIDDGVEF--LRDCEEKFDVIIV-DSTDPVGPAEALFTE 170 (282)
T ss_pred eEEEEEcCHHHHHHHHHhccCcccc--------cCCCceEEEeccHHHH--HHhCCCcCCEEEE-cCCCCCCcccccCCH
Confidence 7888888 67877776533221110 0123444332111100 1123458999884 44433 2 1 237
Q ss_pred HHHHHHHHhcCCCeEEEEE
Q 032462 81 PLLQTIFALSGPKTTILLG 99 (140)
Q Consensus 81 ~L~~tl~~ll~~~~~~~~~ 99 (140)
.+.+.+++.|+++|.+..=
T Consensus 171 eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 171 EFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHHHhcCCCcEEEEe
Confidence 7889999999999987543
No 323
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=20.35 E-value=1.3e+02 Score=21.58 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=32.1
Q ss_pred ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEee
Q 032462 2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTD 71 (140)
Q Consensus 2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~IlasD 71 (140)
+..|++|++++. .+-...+...+... ..++.....|..+.+.... ...+.|+||-+=
T Consensus 24 ~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~vi~~a 88 (250)
T TIGR03206 24 AEEGAKVAVFDLNREAAEKVAADIRAK-------------GGNAQAFACDITDRDSVDTAVAAAEQALGPVDVLVNNA 88 (250)
T ss_pred HHCCCEEEEecCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 456889999986 44444444444321 2356677777776553321 134678666554
No 324
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=20.12 E-value=1.7e+02 Score=21.35 Aligned_cols=23 Identities=30% Similarity=0.216 Sum_probs=14.8
Q ss_pred CccCCC-EEEEecchhH-HHHHHHH
Q 032462 1 MALLGC-NVITTDQIEV-LPLLKRN 23 (140)
Q Consensus 1 lA~lGa-~Vv~TD~~~v-l~~l~~N 23 (140)
||+.|. ++++-|.+.+ ..+|.++
T Consensus 47 La~~Gvg~i~lvD~D~ve~sNL~Rq 71 (212)
T PRK08644 47 LARSGVGNLKLVDFDVVEPSNLNRQ 71 (212)
T ss_pred HHHcCCCeEEEEeCCEecccccccc
Confidence 567887 7999998543 3344433
No 325
>PRK09248 putative hydrolase; Validated
Probab=20.10 E-value=3.7e+02 Score=19.84 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=33.1
Q ss_pred CCCccEEEEe--ecccCccchH-HHHHHHHHhcCCCeEEEEEEEecCh--hHHHHHHHHH-HhcCeEE
Q 032462 61 APPFDYIIGT--DVVYAEHLLE-PLLQTIFALSGPKTTILLGYEIRST--SVHEQMLQMW-KSNFNVK 122 (140)
Q Consensus 61 ~~~~D~Ilas--DviY~~~~~~-~L~~tl~~ll~~~~~~~~~~~~R~~--~~~~~F~~~~-~~~f~v~ 122 (140)
..++|+||+| ...|.+.... .+-..++.+ ..+...+++++.|.. ......++.+ +.|.-+|
T Consensus 91 ~~~~D~vi~svH~~~~~~~~~~~~~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~~lE 157 (246)
T PRK09248 91 LKKLDIVIAGFHEPVFAPGDKETNTQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNVALE 157 (246)
T ss_pred hhhCCEEEEecccCccCCcCHHHHHHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCCEEE
Confidence 3579999998 2333333322 233333334 556677899998753 1234445555 4465444
No 326
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=20.10 E-value=1.6e+02 Score=20.77 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=12.6
Q ss_pred EEEEeecccCccchHHHHH
Q 032462 66 YIIGTDVVYAEHLLEPLLQ 84 (140)
Q Consensus 66 ~IlasDviY~~~~~~~L~~ 84 (140)
..+..|+.|.+..-+....
T Consensus 122 ~~vv~D~~~~~~~~~~~~~ 140 (194)
T cd01078 122 LAVAADVNAVPPVGIEGID 140 (194)
T ss_pred eeEEEEccCCCCCCccccc
Confidence 5678888888875444333
No 327
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.02 E-value=62 Score=27.38 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEecc-hhHHHHHHHHHHHhhc
Q 032462 7 NVITTDQ-IEVLPLLKRNVEWNTS 29 (140)
Q Consensus 7 ~Vv~TD~-~~vl~~l~~Ni~~N~~ 29 (140)
+|++-|. +..+..+++|+++|+.
T Consensus 136 ~v~AnD~~~~aV~~i~~Nv~~N~v 159 (525)
T KOG1253|consen 136 QVVANDLNENAVTSIQRNVELNGV 159 (525)
T ss_pred hhcccCCCHHHHHHHHhhhhhcCc
Confidence 7999997 7899999999999954
Done!