BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032463
         (140 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
          Length = 897

 Score = 26.9 bits (58), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 70  VLGEMLLLYQAFPYMKEKNIFANFFAILPFS-YYNVVQVIFVMYPFAWIKLYSHMLKQRG 128
           ++ + LLL++ +     K++F N   I     ++N   VIF M     + LY+ M   RG
Sbjct: 56  MITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRG 115

Query: 129 S 129
           S
Sbjct: 116 S 116


>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
           P
          Length = 917

 Score = 26.9 bits (58), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 70  VLGEMLLLYQAFPYMKEKNIFANFFAILPFS-YYNVVQVIFVMYPFAWIKLYSHMLKQRG 128
           ++ + LLL++ +     K++F N   I     ++N   VIF M     + LY+ M   RG
Sbjct: 56  MITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRG 115

Query: 129 S 129
           S
Sbjct: 116 S 116


>pdb|2HR7|A Chain A, Insulin Receptor (Domains 1-3)
 pdb|2HR7|B Chain B, Insulin Receptor (Domains 1-3)
          Length = 486

 Score = 26.9 bits (58), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 70  VLGEMLLLYQAFPYMKEKNIFANFFAILPFS-YYNVVQVIFVMYPFAWIKLYSHMLKQRG 128
           ++ + LLL++ +     K++F N   I     ++N   VIF M     + LY+ M   RG
Sbjct: 56  MITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRG 115

Query: 129 S 129
           S
Sbjct: 116 S 116


>pdb|3W14|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
           L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
           Bovine Insulin And Fab 83-14
 pdb|3W14|F Chain F, Insulin Receptor Ectodomain Construct Comprising Domains
           L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
           Bovine Insulin And Fab 83-14
          Length = 609

 Score = 26.6 bits (57), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 70  VLGEMLLLYQAFPYMKEKNIFANFFAILPFS-YYNVVQVIFVMYPFAWIKLYSHMLKQRG 128
           ++ + LLL++ +     K++F N   I     ++N   VIF M     + LY+ M   RG
Sbjct: 56  MITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRG 115

Query: 129 S 129
           S
Sbjct: 116 S 116


>pdb|3W11|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
           L1-cr In Complex With Human Insulin, Alpha-ct
           Peptide(704-719) And Fab 83-7
 pdb|3W12|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
           L1-cr In Complex With High-affinity Insulin Analogue
           [d-pro-b26]-dti-nh2, Alpha-ct Peptide(704-719) And Fab
           83-7
 pdb|3W13|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
           L1-cr In Complex With High-affinity Insulin Analogue
           [d-pro-b26]-dti-nh2, Alphact Peptide(693-719) And Fab
           83-7
          Length = 310

 Score = 26.2 bits (56), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 70  VLGEMLLLYQAFPYMKEKNIFANFFAILPFS-YYNVVQVIFVMYPFAWIKLYSHMLKQRG 128
           ++ + LLL++ +     K++F N   I     ++N   VIF M     + LY+ M   RG
Sbjct: 56  MITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRG 115

Query: 129 S-KLGKRQE 136
           S ++ K  E
Sbjct: 116 SVRIEKNNE 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.333    0.146    0.488 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,060,602
Number of Sequences: 62578
Number of extensions: 144091
Number of successful extensions: 223
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 6
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 46 (22.3 bits)