Query 032463
Match_columns 140
No_of_seqs 109 out of 398
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 14:25:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04387 PTPLA: Protein tyrosi 100.0 2.6E-53 5.5E-58 325.5 7.0 134 1-135 25-164 (164)
2 PLN02838 3-hydroxyacyl-CoA deh 100.0 3E-52 6.5E-57 332.6 6.7 132 1-133 79-217 (221)
3 KOG3187 Protein tyrosine phosp 100.0 1.1E-47 2.4E-52 305.3 8.1 138 1-139 80-223 (223)
4 COG5198 Ptpl Protein tyrosine 100.0 1.4E-35 3E-40 228.3 5.3 120 1-132 76-198 (209)
5 PF07297 DPM2: Dolichol phosph 68.4 5.3 0.00011 27.4 2.5 49 79-129 26-76 (78)
6 PF01151 ELO: GNS1/SUR4 family 68.4 32 0.0007 27.6 7.5 22 29-50 150-171 (250)
7 PF11044 TMEMspv1-c74-12: Plec 36.2 61 0.0013 20.1 3.1 13 101-113 9-21 (49)
8 COG3114 CcmD Heme exporter pro 34.0 70 0.0015 21.2 3.4 19 115-133 29-47 (67)
9 PF12669 P12: Virus attachment 33.5 50 0.0011 21.0 2.6 17 113-129 10-26 (58)
10 PRK13454 F0F1 ATP synthase sub 30.4 75 0.0016 24.4 3.6 40 93-132 21-68 (181)
11 PF03814 KdpA: Potassium-trans 28.8 63 0.0014 29.7 3.3 73 53-129 163-275 (552)
12 MTH00169 ATP8 ATP synthase F0 22.6 1.6E+02 0.0035 19.3 3.6 23 115-138 31-53 (67)
13 PF01235 Na_Ala_symp: Sodium:a 22.0 3.3E+02 0.0071 24.0 6.4 104 23-139 310-415 (416)
14 TIGR00597 rad10 DNA repair pro 20.9 9.4 0.0002 27.8 -2.8 17 24-40 95-111 (112)
No 1
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=100.00 E-value=2.6e-53 Score=325.51 Aligned_cols=134 Identities=46% Similarity=0.857 Sum_probs=127.6
Q ss_pred Cceeeeeeeeee---eecccccCchHHHHHHHHHHhhhhhhhhhHHHHhhCCCCCchhhhhcccccccccchhhHHHHHH
Q 032463 1 MQWCGRTLFFLV---TAREIVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPPWLTYLRYTMFIPLYPIGVLGEMLLL 77 (140)
Q Consensus 1 ~QV~sR~~vvw~---~~p~~~~~~~~~~~~~~aWsi~EviRY~yY~~~~~~~~p~~L~WLRYs~FivLYPlGv~~E~~~i 77 (140)
+||+||++++|+ ..|| +++++++++|++|||++|+|||+||+++++|.+|++|+|||||+|+||||+|++||+.++
T Consensus 25 ~Qv~sR~~vv~~v~~~~p~-~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~p~~L~WLRYs~FivLYPlG~~~E~~~~ 103 (164)
T PF04387_consen 25 MQVFSRLFVVWGVIYPFPE-VQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIVPYWLTWLRYSAFIVLYPLGILSELLLI 103 (164)
T ss_pred HHHHHHHHeehhhhccccc-cccccchhhHHHHHHhhhcchhHHHHHHhcCCCchHHHHHHHhhHhhccchHHHHHHHHH
Confidence 699999999998 6788 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccchhhhccchhccc---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccccccch
Q 032463 78 YQAFPYMKEKNIFANFFA---ILPFSYYNVVQVIFVMYPFAWIKLYSHMLKQRGSKLGKRQ 135 (140)
Q Consensus 78 ~~aLp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~y~pg~~~ly~~Ml~QRkk~l~~~~ 135 (140)
++|+|++++++.++.+|| |+++++++++++++++|+||+|++|+||++||||+++|+|
T Consensus 104 ~~al~~~~~~~~~~~~~pn~~n~~~~~~~~~~~~l~~y~pg~~~ly~hM~~qRrK~l~~~~ 164 (164)
T PF04387_consen 104 YRALPYIKETKRYSVRMPNSWNFSFSYYYFLIFVLLLYIPGFPFLYSHMLKQRRKKLGKKK 164 (164)
T ss_pred HHhCcccccCCeeeeecCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999 6666777889999999999999999999999999997653
No 2
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=100.00 E-value=3e-52 Score=332.56 Aligned_cols=132 Identities=32% Similarity=0.623 Sum_probs=122.8
Q ss_pred Cceeeeeeeeee---eecccccCchHHHHHHHHHHhhhhhhhhhHHHH-hhCCCCCchhhhhcccccccccchhhHHHHH
Q 032463 1 MQWCGRTLFFLV---TAREIVQDHPSLFITFLAWCLIEVIRYPFYALN-TIGACPPWLTYLRYTMFIPLYPIGVLGEMLL 76 (140)
Q Consensus 1 ~QV~sR~~vvw~---~~p~~~~~~~~~~~~~~aWsi~EviRY~yY~~~-~~~~~p~~L~WLRYs~FivLYPlGv~~E~~~ 76 (140)
+||+||++++|+ ..|| +++++.++.|++|||++|+||||||+++ ++|.+|++|+|||||+|+||||+|+.||+.+
T Consensus 79 ~QV~sR~~iv~~v~~~~p~-~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~~~~p~~L~WLRYt~FivLYPlGi~~E~~~ 157 (221)
T PLN02838 79 PQIGSRLFLTWGILWSFPE-VRSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFLLLYPTGITSEVGL 157 (221)
T ss_pred HHHHHHHHHHHHHhhcCcc-hhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhccceecchHHHHHHHH
Confidence 699999999998 7799 8999999999999999999999999887 5599999999999999999999999999999
Q ss_pred HHHhccchhhhccchhccc---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcccccc
Q 032463 77 LYQAFPYMKEKNIFANFFA---ILPFSYYNVVQVIFVMYPFAWIKLYSHMLKQRGSKLGK 133 (140)
Q Consensus 77 i~~aLp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~y~pg~~~ly~~Ml~QRkk~l~~ 133 (140)
|++|+|++++++.|+.+|| |++|++.+++++++++|+||+|+||+||++||||+++|
T Consensus 158 i~~al~~~~~~~~~s~~~Pn~~n~sf~~~~~l~~~l~~YiPg~~~ly~hM~~QRkK~l~~ 217 (221)
T PLN02838 158 IYIALPYMKASEKYCLRMPNKWNFSFDYFYASILVLAIYVPGSPHMYSYMLGQRKKALSK 217 (221)
T ss_pred HHHhchhhhcccccchhcCcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999 44555556688999999999999999999999999964
No 3
>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=1.1e-47 Score=305.31 Aligned_cols=138 Identities=39% Similarity=0.742 Sum_probs=129.4
Q ss_pred Cceeeeeeeeee---eecccccCchHHHHHHHHHHhhhhhhhhhHHHHhhCCCCCchhhhhcccccccccchhhHHHHHH
Q 032463 1 MQWCGRTLFFLV---TAREIVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPPWLTYLRYTMFIPLYPIGVLGEMLLL 77 (140)
Q Consensus 1 ~QV~sR~~vvw~---~~p~~~~~~~~~~~~~~aWsi~EviRY~yY~~~~~~~~p~~L~WLRYs~FivLYPlGv~~E~~~i 77 (140)
+||.||++++|+ .+++ ++.++++..++.||+++|+|||+||+++++|..|++++|||||+|++|||+|++||+.++
T Consensus 80 ~Qv~sRl~il~~i~~~~~~-~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~~p~~l~wlRYt~Fi~LYP~Gi~~E~l~i 158 (223)
T KOG3187|consen 80 FQVSSRLFILWGIFHMCSI-IQASAVVFFLLIAWSLTEIIRYSFYAFNLLGVLPKLLTWLRYTLFILLYPIGITSELLTL 158 (223)
T ss_pred eeecccceehhhhhhccch-hhccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHhhhhhheeeecceehhhHHHH
Confidence 599999999999 7777 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccchhhhccchhccc---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccccccchhhhc
Q 032463 78 YQAFPYMKEKNIFANFFA---ILPFSYYNVVQVIFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 139 (140)
Q Consensus 78 ~~aLp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~y~pg~~~ly~~Ml~QRkk~l~~~~~kkk 139 (140)
++|+|++++++.++++|| |.+||+.+|+++++++|+||+|++|+||.+||||+++++++|||
T Consensus 159 ~~al~~~~~~~~~sv~~pn~~n~~f~~~~fL~i~ml~Yipgf~~l~~hm~~QRkk~l~~~r~~~~ 223 (223)
T KOG3187|consen 159 YAALPAAGETERFSVVMPNKLNISFDFFSFLWIVMLLYIPGFYQLYSHMLKQRKKILKKKRKKKK 223 (223)
T ss_pred HHHHHHhcccceeEEEcCccccchhHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhcccccccCC
Confidence 999999999999999999 66666667788889999999999999999999999988777664
No 4
>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=228.27 Aligned_cols=120 Identities=32% Similarity=0.513 Sum_probs=101.5
Q ss_pred Cceeeeeeeeee-eeccc-ccCchHHHHHHHHHHhhhhhhhhhHHHHhhCCCCCchhhhhcccccccccchhhHHHHHHH
Q 032463 1 MQWCGRTLFFLV-TAREI-VQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPPWLTYLRYTMFIPLYPIGVLGEMLLLY 78 (140)
Q Consensus 1 ~QV~sR~~vvw~-~~p~~-~~~~~~~~~~~~aWsi~EviRY~yY~~~~~~~~p~~L~WLRYs~FivLYPlGv~~E~~~i~ 78 (140)
|||.||++++|+ ..|-. .-++|.+..+.+|||+||++||.||++++-| .|..|+|+|||+|.+|||+|+++|+.|+.
T Consensus 76 ~Qv~SRl~ivwgvf~p~~~~i~s~~y~s~~~aWsiteivRYafY~F~lng-~p~~l~~lRYNlFlilyPiG~~sE~~~~~ 154 (209)
T COG5198 76 MQVISRLFIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRLNG-IPNTLRVLRYNLFLILYPIGFVSEMYCLR 154 (209)
T ss_pred HHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhhhhhhhhcchHHHHHHHHHH
Confidence 699999999999 33541 2248999999999999999999999999866 89999999999999999999999999999
Q ss_pred HhccchhhhccchhcccCccchHH-HHHHHHHHHhhhhHHHHHHHHHHHHccccc
Q 032463 79 QAFPYMKEKNIFANFFAILPFSYY-NVVQVIFVMYPFAWIKLYSHMLKQRGSKLG 132 (140)
Q Consensus 79 ~aLp~~~~~~~~s~~mP~~~f~~~-~~~~~~l~~y~pg~~~ly~~Ml~QRkk~l~ 132 (140)
.+.--.+. .| |+. ..+.+++++|+|||++||+||++||||..+
T Consensus 155 ~~~naa~~--~~---------Sllk~vl~~~ml~YiPGf~~lf~HMlaQRkk~~K 198 (209)
T COG5198 155 ALYNAAGK--IF---------SLLKVVLPIVMLLYIPGFIFLFSHMLAQRKKSRK 198 (209)
T ss_pred HHHHHHHH--HH---------HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 88654333 22 222 335678889999999999999999999885
No 5
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=68.43 E-value=5.3 Score=27.35 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=26.9
Q ss_pred Hhccchhhhcc-chhccc-CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Q 032463 79 QAFPYMKEKNI-FANFFA-ILPFSYYNVVQVIFVMYPFAWIKLYSHMLKQRGS 129 (140)
Q Consensus 79 ~aLp~~~~~~~-~s~~mP-~~~f~~~~~~~~~l~~y~pg~~~ly~~Ml~QRkk 129 (140)
.-+|++++++. +++..| .++...+-++.......+ |. ++-..|+|++||
T Consensus 26 lllPFvd~d~~i~~~F~Pr~yAi~lP~~lll~~~~~v-g~-f~g~vmik~~~k 76 (78)
T PF07297_consen 26 LLLPFVDEDHPIHSFFPPREYAIILPIFLLLLGLSGV-GT-FLGYVMIKSKKK 76 (78)
T ss_pred HHhcccCCCchHHHcCCCHHHHHHHHHHHHHHHHHHH-HH-HHHHHHhhcccc
Confidence 35788887653 555666 555555544333332222 22 345578887764
No 6
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=68.40 E-value=32 Score=27.61 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=18.2
Q ss_pred HHHHhhhhhhhhhHHHHhhCCC
Q 032463 29 LAWCLIEVIRYPFYALNTIGAC 50 (140)
Q Consensus 29 ~aWsi~EviRY~yY~~~~~~~~ 50 (140)
+.=+..-++-|+||+++.+|..
T Consensus 150 ~~N~~VH~iMY~YY~l~a~g~~ 171 (250)
T PF01151_consen 150 ALNSFVHVIMYSYYFLSALGIR 171 (250)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 4447789999999999988864
No 7
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=36.21 E-value=61 Score=20.06 Aligned_cols=13 Identities=8% Similarity=0.125 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHhh
Q 032463 101 YYNVVQVIFVMYP 113 (140)
Q Consensus 101 ~~~~~~~~l~~y~ 113 (140)
|+-..++.+..|+
T Consensus 9 FsvvIil~If~~i 21 (49)
T PF11044_consen 9 FSVVIILGIFAWI 21 (49)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444444
No 8
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=33.99 E-value=70 Score=21.25 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHcccccc
Q 032463 115 AWIKLYSHMLKQRGSKLGK 133 (140)
Q Consensus 115 g~~~ly~~Ml~QRkk~l~~ 133 (140)
....+..|-++|||+.|..
T Consensus 29 ~l~~l~v~sv~qrr~iL~~ 47 (67)
T COG3114 29 PLAVLVVHSVLQRRAILRG 47 (67)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3446778999999999943
No 9
>PF12669 P12: Virus attachment protein p12 family
Probab=33.46 E-value=50 Score=21.03 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHcc
Q 032463 113 PFAWIKLYSHMLKQRGS 129 (140)
Q Consensus 113 ~pg~~~ly~~Ml~QRkk 129 (140)
..+++.+..+++|++|+
T Consensus 10 ~~~~~v~~r~~~k~~K~ 26 (58)
T PF12669_consen 10 AAVAYVAIRKFIKDKKK 26 (58)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33445567899999886
No 10
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=30.40 E-value=75 Score=24.36 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=21.7
Q ss_pred cccCccch-H----HHHHHHHHHHhhhhHHH---HHHHHHHHHccccc
Q 032463 93 FFAILPFS-Y----YNVVQVIFVMYPFAWIK---LYSHMLKQRGSKLG 132 (140)
Q Consensus 93 ~mP~~~f~-~----~~~~~~~l~~y~pg~~~---ly~~Ml~QRkk~l~ 132 (140)
.||.++++ | -++++.++++|+....+ =...++.+|++...
T Consensus 21 gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~ 68 (181)
T PRK13454 21 GMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTIT 68 (181)
T ss_pred CCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57755543 2 23344444444433222 25688899998873
No 11
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=28.84 E-value=63 Score=29.66 Aligned_cols=73 Identities=15% Similarity=0.306 Sum_probs=49.0
Q ss_pred chhhhhcccccccccchhhHHHHHHHHhcc---------------------------------------chhhhccchhc
Q 032463 53 WLTYLRYTMFIPLYPIGVLGEMLLLYQAFP---------------------------------------YMKEKNIFANF 93 (140)
Q Consensus 53 ~L~WLRYs~FivLYPlGv~~E~~~i~~aLp---------------------------------------~~~~~~~~s~~ 93 (140)
|.+..| +...+|-|+.+..-++++.+..| ++..+..|++|
T Consensus 163 wvDl~R-~~l~vLLPlS~v~AliLv~qGVpQtf~~~~~v~tleg~~Q~i~~GPvAs~eaIK~LGTNGGGff~aNSAhPfE 241 (552)
T PF03814_consen 163 WVDLVR-STLRVLLPLSFVFALILVSQGVPQTFSGYVTVTTLEGATQTIPLGPVASQEAIKQLGTNGGGFFGANSAHPFE 241 (552)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhcCccccccCCceeeeeccceeeeccCccHHHHHHHHhccCCCcccCCCCCCCCC
Confidence 888888 45667889999999999987776 22223334444
Q ss_pred ccCccchHHHHHHHHHHHhhh-hHHHHHHHHHHHHcc
Q 032463 94 FAILPFSYYNVVQVIFVMYPF-AWIKLYSHMLKQRGS 129 (140)
Q Consensus 94 mP~~~f~~~~~~~~~l~~y~p-g~~~ly~~Ml~QRkk 129 (140)
-|+ .+.-++-.+.++-+| +.++.|.+|.+.||+
T Consensus 242 NPt---~~sN~~e~~~illIP~al~~~fG~~~~~~rq 275 (552)
T PF03814_consen 242 NPT---PLSNFLEMLSILLIPAALPFTFGRMVGDRRQ 275 (552)
T ss_pred CCh---HHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 441 123345455555555 669999999998875
No 12
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=22.56 E-value=1.6e+02 Score=19.27 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHccccccchhhh
Q 032463 115 AWIKLYSHMLKQRGSKLGKRQEKK 138 (140)
Q Consensus 115 g~~~ly~~Ml~QRkk~l~~~~~kk 138 (140)
+.|. ....++-|.+..+..+.+|
T Consensus 31 iLPr-i~~~l~~R~~~~~~~~~~k 53 (67)
T MTH00169 31 ILPK-IQQQLVIRTKGVNSVEGKK 53 (67)
T ss_pred HHHH-HHHHHHHHHHHhhhccccc
Confidence 3454 6678899998886543333
No 13
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=21.97 E-value=3.3e+02 Score=24.03 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhhCC--CCCchhhhhcccccccccchhhHHHHHHHHhccchhhhccchhcccCccch
Q 032463 23 SLFITFLAWCLIEVIRYPFYALNTIGA--CPPWLTYLRYTMFIPLYPIGVLGEMLLLYQAFPYMKEKNIFANFFAILPFS 100 (140)
Q Consensus 23 ~~~~~~~aWsi~EviRY~yY~~~~~~~--~p~~L~WLRYs~FivLYPlGv~~E~~~i~~aLp~~~~~~~~s~~mP~~~f~ 100 (140)
.+...++.-+.|-++=+.||.-+.... ......++---.|++.-++|...+.-.+++--+.... -
T Consensus 310 ~v~i~l~lFafTTilg~~~yge~~~~yl~~~~~~~~~~ri~~i~~~~~G~~~~~~~vW~~~Di~~~-------------l 376 (416)
T PF01235_consen 310 FVAIALFLFAFTTILGWYYYGEKCAEYLFGGKKAIWIYRILFIAMVFIGAVIDLDLVWDLADIANG-------------L 376 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEeeeehhhhhhhhhhcccchhHHHHHHHHHH-------------H
Confidence 466777778888999999998853322 1223333333456777778887776666543221111 0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHccccccchhhhc
Q 032463 101 YYNVVQVIFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 139 (140)
Q Consensus 101 ~~~~~~~~l~~y~pg~~~ly~~Ml~QRkk~l~~~~~kkk 139 (140)
.-..=.+.+++.-+-......+-.+|||+-.+..-+++|
T Consensus 377 mai~Nlial~lL~~~v~~~~~dy~~~~k~g~~P~f~~~~ 415 (416)
T PF01235_consen 377 MAIPNLIALLLLSKEVIKELKDYFKQRKEGKDPVFNPDK 415 (416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCccCCCC
Confidence 000112333334444555666667777765544444444
No 14
>TIGR00597 rad10 DNA repair protein rad10. All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.93 E-value=9.4 Score=27.82 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhhhhhh
Q 032463 24 LFITFLAWCLIEVIRYP 40 (140)
Q Consensus 24 ~~~~~~aWsi~EviRY~ 40 (140)
=+++++|||.-|.-||.
T Consensus 95 ~~TLilaws~eEaa~Yl 111 (112)
T TIGR00597 95 DCTLILAWSFEEAARYL 111 (112)
T ss_pred CcEEEEECCHHHHHHhh
Confidence 34678999999999984
Done!