Query 032463
Match_columns 140
No_of_seqs 109 out of 398
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 23:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kpa_A ARNO(375-400); hydrolas 13.2 27 0.00093 18.3 -0.7 13 121-133 7-19 (26)
2 2a1i_A DNA excision repair pro 12.5 8.7 0.0003 28.2 -3.9 16 25-40 113-128 (146)
3 4b19_A PEPA1; toxin, toxin apo 10.4 1.4E+02 0.0049 16.0 1.6 14 117-130 17-30 (30)
4 3im4_C Dual specificity A kina 9.0 1.2E+02 0.0041 17.7 1.0 9 29-37 17-25 (45)
5 1s99_A YKOF; thiamin-binding p 7.1 1.4E+02 0.0048 22.6 1.0 29 63-91 119-147 (200)
6 2db7_A Hairy/enhancer-OF-split 6.3 1.6E+02 0.0054 18.2 0.7 13 28-40 23-35 (64)
7 1vf5_H Protein PET N; photosyn 5.2 4.5E+02 0.015 13.8 2.0 18 21-38 7-24 (29)
8 3rfr_C PMOC; membrane, oxidore 5.1 1.1E+03 0.036 18.5 5.0 56 78-133 35-94 (256)
9 1q90_N Cytochrome B6F complex 5.1 4.6E+02 0.016 14.0 2.0 18 21-38 9-26 (31)
10 3si5_X Protein CASC5; BUBR1-bl 5.0 1.6E+02 0.0053 14.9 0.1 8 67-74 2-9 (24)
No 1
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=13.16 E-value=27 Score=18.30 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=10.4
Q ss_pred HHHHHHHcccccc
Q 032463 121 SHMLKQRGSKLGK 133 (140)
Q Consensus 121 ~~Ml~QRkk~l~~ 133 (140)
-+|++.|||+...
T Consensus 7 Ydml~~RKkKi~~ 19 (26)
T 2kpa_A 7 YEMLAARKKRISV 19 (26)
T ss_dssp HHHHTCTHHHHHC
T ss_pred HHHHHHHHHHhcc
Confidence 3899999998854
No 2
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=12.47 E-value=8.7 Score=28.15 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhhhhh
Q 032463 25 FITFLAWCLIEVIRYP 40 (140)
Q Consensus 25 ~~~~~aWsi~EviRY~ 40 (140)
+++++|||.-|.-||.
T Consensus 113 ~TLiLawS~eEaa~Yl 128 (146)
T 2a1i_A 113 CTLILAWSPEEAGRYL 128 (146)
T ss_dssp CEEEEESSHHHHHHHH
T ss_pred CEEEEECCHHHHHHHH
Confidence 4578899999999996
No 3
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=10.43 E-value=1.4e+02 Score=15.97 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHccc
Q 032463 117 IKLYSHMLKQRGSK 130 (140)
Q Consensus 117 ~~ly~~Ml~QRkk~ 130 (140)
.-+|+|-++.|.|+
T Consensus 17 valF~hWL~~r~~k 30 (30)
T 4b19_A 17 IAFFSYWLSRRNTK 30 (30)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccCC
Confidence 45789999999863
No 4
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=9.04 E-value=1.2e+02 Score=17.72 Aligned_cols=9 Identities=44% Similarity=0.984 Sum_probs=6.8
Q ss_pred HHHHhhhhh
Q 032463 29 LAWCLIEVI 37 (140)
Q Consensus 29 ~aWsi~Evi 37 (140)
+||-++|+|
T Consensus 17 MAWqIA~MI 25 (45)
T 3im4_C 17 LAWKIAKMI 25 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578888776
No 5
>1s99_A YKOF; thiamin-binding protein, ACT-domain family, ligand binding protein; 1.65A {Bacillus subtilis} SCOP: d.58.48.2 PDB: 1sbr_A* 1s7h_A
Probab=7.13 E-value=1.4e+02 Score=22.62 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.1
Q ss_pred cccccchhhHHHHHHHHhccchhhhccch
Q 032463 63 IPLYPIGVLGEMLLLYQAFPYMKEKNIFA 91 (140)
Q Consensus 63 ivLYPlGv~~E~~~i~~aLp~~~~~~~~s 91 (140)
+-|||+|..-=|-.|+..+...++.+.+.
T Consensus 119 fslYpmg~~~ym~~I~~~i~~a~~~g~~~ 147 (200)
T 1s99_A 119 FALYPMNEPDYMGLIMEAVDIAKAQGTFV 147 (200)
T ss_dssp EEEEETTCTTHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCccHHHHHHHHHHHHHHcCccc
Confidence 45999999988999999999888876543
No 6
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=6.33 E-value=1.6e+02 Score=18.21 Aligned_cols=13 Identities=46% Similarity=0.590 Sum_probs=9.9
Q ss_pred HHHHHhhhhhhhh
Q 032463 28 FLAWCLIEVIRYP 40 (140)
Q Consensus 28 ~~aWsi~EviRY~ 40 (140)
-+.=|+.||.||.
T Consensus 23 Gf~eC~~EV~rfL 35 (64)
T 2db7_A 23 GFRECLAEVARYL 35 (64)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4455889999985
No 7
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=5.21 E-value=4.5e+02 Score=13.83 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=11.9
Q ss_pred chHHHHHHHHHHhhhhhh
Q 032463 21 HPSLFITFLAWCLIEVIR 38 (140)
Q Consensus 21 ~~~~~~~~~aWsi~EviR 38 (140)
.|+....++.+|++-|++
T Consensus 7 ~WaalmvvftfSlslVVW 24 (29)
T 1vf5_H 7 GWVALLVVFTWSIAMVVW 24 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhheeeeEEEE
Confidence 355666677788876653
No 8
>3rfr_C PMOC; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_C
Probab=5.14 E-value=1.1e+03 Score=18.52 Aligned_cols=56 Identities=7% Similarity=0.007 Sum_probs=33.3
Q ss_pred HHhccchhhhccchhcccCccchHHHH----HHHHHHHhhhhHHHHHHHHHHHHcccccc
Q 032463 78 YQAFPYMKEKNIFANFFAILPFSYYNV----VQVIFVMYPFAWIKLYSHMLKQRGSKLGK 133 (140)
Q Consensus 78 ~~aLp~~~~~~~~s~~mP~~~f~~~~~----~~~~l~~y~pg~~~ly~~Ml~QRkk~l~~ 133 (140)
+..+-..+..-.++..|-..+..|..+ +..-+++-+..+-.+++++.|-|.+.+.+
T Consensus 35 y~~~r~Yqq~faw~~GLDs~~PeF~~yWm~ll~~e~~l~~~~~~~~~g~lWkTRdr~~~~ 94 (256)
T 3rfr_C 35 YLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVDA 94 (256)
T ss_dssp HHHHHHHHHHHHTTTSSCTTSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCTT
T ss_pred HHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHheeecCcchhh
Confidence 344444444433443343344455543 34445555667788999999999999843
No 9
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=5.10 E-value=4.6e+02 Score=14.03 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHhhhhhh
Q 032463 21 HPSLFITFLAWCLIEVIR 38 (140)
Q Consensus 21 ~~~~~~~~~aWsi~EviR 38 (140)
.|+....++.+|++-|++
T Consensus 9 ~WaalmvvfTfSlslVVW 26 (31)
T 1q90_N 9 GWAATCVMFSFSLSLVVW 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhheeeEEEEE
Confidence 355566677777776653
No 10
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=5.03 E-value=1.6e+02 Score=14.94 Aligned_cols=8 Identities=38% Similarity=0.655 Sum_probs=4.3
Q ss_pred cchhhHHH
Q 032463 67 PIGVLGEM 74 (140)
Q Consensus 67 PlGv~~E~ 74 (140)
|+|..+|-
T Consensus 2 ~~~~ssek 9 (24)
T 3si5_X 2 PLGSSSEN 9 (26)
T ss_pred CCccchhh
Confidence 55555553
Done!