Query 032463
Match_columns 140
No_of_seqs 109 out of 398
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 23:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032463.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032463hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 28.8 18 0.0013 17.5 2.0 16 22-37 6-21 (27)
2 d1s99a_ d.58.48.2 (A:) Putativ 16.7 20 0.0015 25.4 1.0 30 62-91 110-139 (189)
3 d2a1ia1 c.52.1.20 (A:99-227) D 12.0 4.2 0.00031 27.5 -3.9 26 24-50 95-120 (129)
4 d1k1va_ a.37.1.1 (A:) Mafg {Mo 11.7 27 0.002 18.8 0.3 11 124-134 29-39 (41)
5 d2db7a1 a.273.1.1 (A:3-57) Hai 9.8 40 0.0029 19.2 0.6 14 27-40 15-28 (55)
6 d1l8na2 d.92.2.2 (A:4-142) alp 4.4 79 0.0058 20.2 -0.1 6 55-60 5-10 (139)
7 d1h41a2 d.92.2.2 (A:5-151) alp 3.3 1.2E+02 0.0087 19.5 -0.0 6 55-60 6-11 (147)
8 d1mw5a_ d.259.1.1 (A:) Hypothe 3.2 1.9E+02 0.014 18.7 0.9 42 45-87 105-148 (162)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.0 5.4E+02 0.039 15.1 3.4 25 106-130 40-64 (107)
10 d2d81a1 c.69.1.37 (A:21-338) P 2.9 1.6E+02 0.012 21.4 0.4 20 52-71 246-265 (318)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.83 E-value=18 Score=17.53 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHhhhhh
Q 032463 22 PSLFITFLAWCLIEVI 37 (140)
Q Consensus 22 ~~~~~~~~aWsi~Evi 37 (140)
|...+.++.||++-++
T Consensus 6 wv~llvvftwsiamvv 21 (27)
T d2e74h1 6 WVALLVVFTWSIAMVV 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhheeeeEE
Confidence 4456778999998664
No 2
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=16.70 E-value=20 Score=25.43 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=25.3
Q ss_pred ccccccchhhHHHHHHHHhccchhhhccch
Q 032463 62 FIPLYPIGVLGEMLLLYQAFPYMKEKNIFA 91 (140)
Q Consensus 62 FivLYPlGv~~E~~~i~~aLp~~~~~~~~s 91 (140)
=+-|||+|..--|--||..+...++.+.|.
T Consensus 110 qfsLYpmg~~d~m~~Iy~~id~~k~~G~~~ 139 (189)
T d1s99a_ 110 QFALYPMNEPDYMGLIMEAVDIAKAQGTFV 139 (189)
T ss_dssp EEEEEETTCTTHHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEecCCccHHHHHHHHHHHHHHcCCCc
Confidence 356999999989999999999999976543
No 3
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.98 E-value=4.2 Score=27.52 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhhCCC
Q 032463 24 LFITFLAWCLIEVIRYPFYALNTIGAC 50 (140)
Q Consensus 24 ~~~~~~aWsi~EviRY~yY~~~~~~~~ 50 (140)
=+++++|||.-|.-||. -.++.....
T Consensus 95 ~~TLilaws~eEaa~Yl-E~~k~~e~~ 120 (129)
T d2a1ia1 95 DCTLILAWSPEEAGRYL-ETYKAYEQK 120 (129)
T ss_dssp TCEEEEESSHHHHHHHH-HHHHTCCSS
T ss_pred CCEEEEEcCHHHHHHHH-HHHHHhcCC
Confidence 34578899999999995 233444333
No 4
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.74 E-value=27 Score=18.79 Aligned_cols=11 Identities=55% Similarity=0.664 Sum_probs=7.9
Q ss_pred HHHHccccccc
Q 032463 124 LKQRGSKLGKR 134 (140)
Q Consensus 124 l~QRkk~l~~~ 134 (140)
+|||++.|+.|
T Consensus 29 lKqrRRTLKNR 39 (41)
T d1k1va_ 29 LKQRRRTLKNR 39 (41)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHhhhcC
Confidence 58888877654
No 5
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.82 E-value=40 Score=19.17 Aligned_cols=14 Identities=43% Similarity=0.517 Sum_probs=10.6
Q ss_pred HHHHHHhhhhhhhh
Q 032463 27 TFLAWCLIEVIRYP 40 (140)
Q Consensus 27 ~~~aWsi~EviRY~ 40 (140)
+-+.=|.+||-||.
T Consensus 15 ~GF~ECa~EV~RyL 28 (55)
T d2db7a1 15 LGFRECLAEVARYL 28 (55)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 34556899999984
No 6
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.43 E-value=79 Score=20.16 Aligned_cols=6 Identities=50% Similarity=1.110 Sum_probs=4.1
Q ss_pred hhhhcc
Q 032463 55 TYLRYT 60 (140)
Q Consensus 55 ~WLRYs 60 (140)
-||||.
T Consensus 5 ~WLrY~ 10 (139)
T d1l8na2 5 CWLRYE 10 (139)
T ss_dssp TTCCCC
T ss_pred hhcCCC
Confidence 477775
No 7
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=3.25 E-value=1.2e+02 Score=19.49 Aligned_cols=6 Identities=50% Similarity=1.110 Sum_probs=4.1
Q ss_pred hhhhcc
Q 032463 55 TYLRYT 60 (140)
Q Consensus 55 ~WLRYs 60 (140)
.||||.
T Consensus 6 ~WLrY~ 11 (147)
T d1h41a2 6 MWLRYQ 11 (147)
T ss_dssp TTCCCC
T ss_pred HhhCCC
Confidence 577874
No 8
>d1mw5a_ d.259.1.1 (A:) Hypothetical protein HI1480 {Haemophilus influenzae [TaxId: 727]}
Probab=3.16 E-value=1.9e+02 Score=18.74 Aligned_cols=42 Identities=33% Similarity=0.505 Sum_probs=31.0
Q ss_pred HhhCCCCCchhhhhcccccccccchhhHHHHHHH--Hhccchhhh
Q 032463 45 NTIGACPPWLTYLRYTMFIPLYPIGVLGEMLLLY--QAFPYMKEK 87 (140)
Q Consensus 45 ~~~~~~p~~L~WLRYs~FivLYPlGv~~E~~~i~--~aLp~~~~~ 87 (140)
+.+|.+|--|.-|- .-|+||-|-+....+.+.. .||||++-+
T Consensus 105 nkigsepldlsnlp-apfyvllpesfaaritllvqdkalpyvrvs 148 (162)
T d1mw5a_ 105 NKIGSEPLDLSNLP-APFYVLLPESFAARITLLVQDKALPYVRVS 148 (162)
T ss_dssp HHHHHSCCEETTEE-CCEEEEEESSHHHHHHHHHHCSEEEEEEEE
T ss_pred hccCCCCcccccCC-CceeEeccHHhhhHhhheeccccCceeeee
Confidence 56677776555543 4689999999999888776 478887653
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.01 E-value=5.4e+02 Score=15.12 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=13.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHccc
Q 032463 106 QVIFVMYPFAWIKLYSHMLKQRGSK 130 (140)
Q Consensus 106 ~~~l~~y~pg~~~ly~~Ml~QRkk~ 130 (140)
.+...+.+-....+..-|.+.|+|.
T Consensus 40 ~i~~~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 40 YIITAVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccC
Confidence 3333334444445555677777764
No 10
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]}
Probab=2.94 E-value=1.6e+02 Score=21.37 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.2
Q ss_pred Cchhhhhcccccccccchhh
Q 032463 52 PWLTYLRYTMFIPLYPIGVL 71 (140)
Q Consensus 52 ~~L~WLRYs~FivLYPlGv~ 71 (140)
.+-.|.--+-||||||=+..
T Consensus 246 g~~~~ad~~~~ivlyPq~~~ 265 (318)
T d2d81a1 246 GYNKWADTNNMIILYPQAIP 265 (318)
T ss_dssp CHHHHHTTTTEEEEECCBCC
T ss_pred CHHHHHHhCCeEEEeCCccc
Confidence 46688888999999997653
Done!