BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032464
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AVA|A Chain A, Solution Structure Of Stearoyl-Acyl Carrier Protein
pdb|2FVA|A Chain A, Structure Of 18:0-Acp With Docked Fatty Acid
pdb|2FVE|A Chain A, Structure Of 10:0-Acp (Protein Alone)
pdb|2FVF|A Chain A, Structure Of 10:0-Acp (Protein With Docked Fatty Acid)
Length = 82
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 61/82 (74%)
Query: 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLXXXXXXXXXXXN 117
AK ET+ KV +IV+ +LAL A+ +T++S+FS LGADSLDTVEIVM+L
Sbjct: 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDK 60
Query: 118 SQNITTVQEAADLIEKLVEKKA 139
+Q+I+T+Q+AAD+IE L+EKKA
Sbjct: 61 AQDISTIQQAADVIEGLLEKKA 82
>pdb|2XZ0|D Chain D, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|C Chain C, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|D Chain D, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 82
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%)
Query: 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLXXXXXXXXXXXN 117
AK ET+ KV +IV+ +LAL A+ +T++S+FS LGAD LDTVEIVM+L
Sbjct: 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADXLDTVEIVMNLEEEFGINVDEDK 60
Query: 118 SQNITTVQEAADLIEKLVEKKA 139
+Q+I+T+Q+AAD+IE L+EKKA
Sbjct: 61 AQDISTIQQAADVIEGLLEKKA 82
>pdb|2K92|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K93|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K94|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
Length = 77
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQNIT 122
++V +I+ +QL + E E+T+ + F LGADSLDTVE+VM+L ++ IT
Sbjct: 5 ERVKKIIGQQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKIT 63
Query: 123 TVQEAADLI 131
TVQ A D I
Sbjct: 64 TVQAAIDYI 72
>pdb|3EJB|A Chain A, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|C Chain C, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|E Chain E, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|G Chain G, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|A Chain A, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|C Chain C, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|E Chain E, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|G Chain G, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|A Chain A, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|C Chain C, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|E Chain E, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|G Chain G, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
Length = 97
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQNIT 122
++V +I+ QL + E E+T+ + F LGADSLDTVE+VM+L ++ IT
Sbjct: 25 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKIT 83
Query: 123 TVQEAADLI 131
TVQ A D I
Sbjct: 84 TVQAAIDYI 92
>pdb|1T8K|A Chain A, Crystal Structure Of Apo Acyl Carrier Protein From E. Coli
pdb|2FAC|A Chain A, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAC|B Chain B, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAD|A Chain A, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAD|B Chain B, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAE|A Chain A, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|2FAE|B Chain B, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|1ACP|A Chain A, Refinement Of The Nmr Structures For Acyl Carrier Protein
With Scalar Coupling Data
pdb|4ETW|D Chain D, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|B Chain B, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 77
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQNIT 122
++V +I+ QL + E E+T+ + F LGADSLDTVE+VM+L ++ IT
Sbjct: 5 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKIT 63
Query: 123 TVQEAADLI 131
TVQ A D I
Sbjct: 64 TVQAAIDYI 72
>pdb|1L0H|A Chain A, Crystal Structure Of Butyryl-Acp From E.Coli
pdb|2FHS|C Chain C, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
pdb|3NY7|B Chain B, Stas Domain Of Ychm Bound To Acp
Length = 78
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQNIT 122
++V +I+ QL + E E+T+ + F LGADSLDTVE+VM+L ++ IT
Sbjct: 6 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKIT 64
Query: 123 TVQEAADLI 131
TVQ A D I
Sbjct: 65 TVQAAIDYI 73
>pdb|2L0Q|A Chain A, Nmr Solution Structure Of Vibrio Harveyi Acyl Carrier
Protein (Acp)
Length = 80
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQNIT 122
++V +I+ QL + E E+ +E+ F LGADSLDTVE+VM+L ++ IT
Sbjct: 9 ERVKKIIVEQLGVD-EAEVKNEASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKIT 67
Query: 123 TVQEAADLI 131
TVQ A D +
Sbjct: 68 TVQAAIDYV 76
>pdb|1L0I|A Chain A, Crystal Structure Of Butyryl-Acp I62m Mutant
Length = 78
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQNIT 122
++V +I+ QL + E E+T+ + F LGADSLDTVE+VM+L ++ +T
Sbjct: 6 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMT 64
Query: 123 TVQEAADLI 131
TVQ A D I
Sbjct: 65 TVQAAIDYI 73
>pdb|2FQ0|A Chain A, Solution Structure Of Major Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
pdb|2FQ2|A Chain A, Solution Structure Of Minor Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
Length = 79
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 62 TVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVEIVMSLXXXXXXXXXXXNSQN 120
T + +I+ +QL++ E ++ S F+ LGADSLD VE++M+L ++
Sbjct: 4 TFDDIKKIISKQLSVE-EDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALK 62
Query: 121 ITTVQEAADLIEK 133
I TVQ+A D IEK
Sbjct: 63 INTVQDAIDYIEK 75
>pdb|3GZL|A Chain A, Crystal Structure Of Holo Pfacp Disulfide-Linked Dimer
pdb|3GZM|A Chain A, Crystal Structure Of Holo Pfacp Reduced Monomer
pdb|3GZM|B Chain B, Crystal Structure Of Holo Pfacp Reduced Monomer
Length = 81
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 62 TVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVEIVMSLXXXXXXXXXXXNSQN 120
T + +I+ +QL++ E ++ S F+ LGADSLD VE++M+L ++
Sbjct: 6 TFDDIKKIISKQLSVE-EDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALK 64
Query: 121 ITTVQEAADLIEK 133
I TVQ+A D IEK
Sbjct: 65 INTVQDAIDYIEK 77
>pdb|2EHS|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 1)
pdb|2EHT|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 2)
Length = 77
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQNIT 122
++V EI+ QL + E +T E+KF LGADSLD VE++M+ +++ I
Sbjct: 4 ERVKEIIAEQLGVEKEK-ITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQ 62
Query: 123 TVQEAADLIEKLVEK 137
TV D+I L EK
Sbjct: 63 TV---GDVINYLKEK 74
>pdb|2L3V|A Chain A, Nmr Structure Of Acyl Carrier Protein From Brucella
Melitensis
Length = 79
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLXXXXXXXXXXXNSQN 120
+T ++V +IV L + A+ S LGADSLDTVE+VM+ ++
Sbjct: 4 DTAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAET 63
Query: 121 ITTVQEAADLIEK 133
I TV +A I+K
Sbjct: 64 ILTVGDAVKFIDK 76
>pdb|1X3O|A Chain A, Crystal Structure Of The Acyl Carrier Protein From Thermus
Thermophilus Hb8
Length = 80
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQ 119
E +KV ++ +L + E +T E++F LGADSLDTVE++M L ++
Sbjct: 5 EIFEKVKAVIADKLQVEPEK-VTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAE 63
Query: 120 NITTVQEAADLI 131
I TV++A + I
Sbjct: 64 KIRTVKDAVEYI 75
>pdb|2X2B|A Chain A, Crystal Structure Of Malonyl-Acp (Acyl Carrier Protein)
From Bacillus Subtilis
Length = 78
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 60 PETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNS 118
+T+++V +I+ +L + E ++ E+ F LGADSLD VE+VM L ++
Sbjct: 3 ADTLERVTKIIVDRLGVD-EADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDA 61
Query: 119 QNITTVQEAADLIE 132
+ I TV +A + I+
Sbjct: 62 EKIATVGDAVNYIQ 75
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQ 119
+T+++V +I+ +L + E ++ E+ F LGADSLD VE+VM L +++
Sbjct: 2 DTLERVTKIIVDRLGVD-EADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAE 60
Query: 120 NITTVQEAADLIE 132
I TV +A + I+
Sbjct: 61 KIATVGDAVNYIQ 73
>pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|F Chain F, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
Length = 81
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQ 119
+T+++V +I+ +L + E ++ E+ F LGAD LD VE+VM L +++
Sbjct: 7 DTLERVTKIIVDRLGVD-EADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAE 65
Query: 120 NITTVQEAADLIE 132
I TV +A + I+
Sbjct: 66 KIATVGDAVNYIQ 78
>pdb|4DXE|H Chain H, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|L Chain L, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|K Chain K, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|G Chain G, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|J Chain J, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|I Chain I, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
Length = 101
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQ 119
E KV +I+ +L + A+ ++T ++ F LGADSLD E+VM L ++
Sbjct: 26 ENFDKVKDIIVDRLGVDAD-KVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAE 84
Query: 120 NITTVQEAADLIEKL 134
I TV +A I L
Sbjct: 85 KINTVGDAVKFINSL 99
>pdb|2QNW|A Chain A, Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein
Length = 82
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 63 VQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLXXXXXXXXXXXNSQNI 121
+++V ++V QL + + ES F L ADSLD+VE+VM+ + I
Sbjct: 9 LERVKDVVADQLGVD-RARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKI 67
Query: 122 TTVQEAADLIEK 133
TVQ+A IEK
Sbjct: 68 ATVQDALSYIEK 79
>pdb|2LOL|A Chain A, Nmr Structure Of An Acyl-Carrier Protein From Rickettsia
Prowazekii, Seattle Structural Genomics Center For
Infectious Disease (Ssgcid)
Length = 81
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSL 105
QKV E+V +L +T++S+F L ADSLDTVE++M++
Sbjct: 9 QKVIEMVAEKLNKDKAI-ITTDSRFIEDLKADSLDTVELMMAI 50
>pdb|2DNW|A Chain A, Solution Structure Of Rsgi Ruh-059, An Acp Domain Of Acyl
Carrier Protein, Mitochondrial [precursor] From Human
Cdna
Length = 99
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 55 SCSAKPETVQKVCEIVRRQLALPAETE---LTSESKF-SALGADSLDTVEIVMSLXXXXX 110
S P T++ + + V L L + + L+ S F LG DSLD VEI+M++
Sbjct: 5 SSGMPPLTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFG 64
Query: 111 XXXXXXNSQNITTVQEAADLI 131
+++ + QE D I
Sbjct: 65 FEIPDIDAEKLMCPQEIVDYI 85
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 54 VSCSAKPETVQKVCEIVRRQLALPAETELT 83
++C PE V+ +C VR+ + +P +LT
Sbjct: 682 LACGQDPELVRNICRWVRQAVQIPFFAKLT 711
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 54 VSCSAKPETVQKVCEIVRRQLALPAETELT 83
++C PE V+ +C VR+ + +P +LT
Sbjct: 682 LACGQDPELVRNICRWVRQAVQIPFFAKLT 711
>pdb|3CE7|A Chain A, Crystal Structure Of Toxoplasma Specific Mitochodrial Acyl
Carrier Protein, 59.M03510
Length = 107
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 94 DSLDTVEIVMSLXXXXXXXXXXXNSQNITTVQEAADLI 131
D LDTVE V+ + + N T+QE AD +
Sbjct: 56 DCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADFV 93
>pdb|2KOO|A Chain A, Nmr Solution Structures Of Hexanoyl-Acp From The
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOP|A Chain A, Nmr Solution Structures Of 3-Oxooctanyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOQ|A Chain A, Nmr Solution Structures Of 3-Hydroxyoctanoyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOR|A Chain A, Nmr Solution Structures Of 2-Octenoyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOS|A Chain A, Nmr Solution Structures Of Octanoyl-Acp From Streptomyces
Coelicolor Fatty Acid Synthase
Length = 81
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLXXXXXXXXXX 115
+ + E V + EIV +P E +S L DSL VE+V++
Sbjct: 1 AATQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPD 60
Query: 116 XNSQNITTVQEA 127
+ +N+ TV +A
Sbjct: 61 DDVKNLKTVGDA 72
>pdb|2CNR|A Chain A, Structural Studies On The Interaction Of Scfas Acp With
Acps
Length = 82
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLXXXXXXXXXX 115
+ + E V + EIV +P E +S L DSL VE+V++
Sbjct: 2 AATQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPD 61
Query: 116 XNSQNITTVQEA 127
+ +N+ TV +A
Sbjct: 62 DDVKNLKTVGDA 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.125 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,882,066
Number of Sequences: 62578
Number of extensions: 85521
Number of successful extensions: 217
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 30
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)