Query 032464
Match_columns 140
No_of_seqs 308 out of 1272
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 14:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1748 Acyl carrier protein/N 99.9 4.6E-22 1E-26 144.9 4.4 82 56-138 48-130 (131)
2 PRK07117 acyl carrier protein; 99.8 5.1E-21 1.1E-25 129.2 6.8 78 57-135 1-79 (79)
3 PRK05828 acyl carrier protein; 99.8 1.2E-20 2.5E-25 128.9 7.9 82 57-139 1-83 (84)
4 PRK05350 acyl carrier protein; 99.8 4.3E-20 9.4E-25 124.7 7.1 79 57-136 2-81 (82)
5 CHL00124 acpP acyl carrier pro 99.8 1.1E-19 2.3E-24 122.3 7.0 81 57-138 1-82 (82)
6 PRK07639 acyl carrier protein; 99.8 2.9E-19 6.2E-24 122.3 8.5 81 57-137 1-84 (86)
7 PRK08172 putative acyl carrier 99.8 1.8E-19 3.9E-24 122.4 7.1 77 60-137 3-80 (82)
8 PRK05883 acyl carrier protein; 99.8 3.1E-19 6.8E-24 123.3 8.0 80 56-136 9-89 (91)
9 PRK12449 acyl carrier protein; 99.8 4.5E-19 9.8E-24 118.7 7.8 78 57-135 1-79 (80)
10 PTZ00171 acyl carrier protein; 99.8 7.3E-19 1.6E-23 131.4 8.2 88 51-139 60-148 (148)
11 TIGR00517 acyl_carrier acyl ca 99.7 7.9E-18 1.7E-22 111.9 6.6 74 60-134 2-76 (77)
12 PRK06508 acyl carrier protein; 99.7 7.9E-18 1.7E-22 116.9 6.5 80 60-140 2-93 (93)
13 COG0236 AcpP Acyl carrier prot 99.7 1.3E-17 2.8E-22 112.1 6.6 77 58-135 2-79 (80)
14 PRK09184 acyl carrier protein; 99.7 4E-17 8.7E-22 112.5 7.8 78 58-136 3-88 (89)
15 PRK07081 acyl carrier protein; 99.7 1.7E-16 3.7E-21 107.8 6.9 76 63-139 2-81 (83)
16 PRK00982 acpP acyl carrier pro 99.7 2.3E-16 4.9E-21 104.9 6.7 75 60-135 2-77 (78)
17 PF00550 PP-binding: Phosphopa 99.6 5.2E-15 1.1E-19 94.8 7.5 67 64-131 1-67 (67)
18 PRK05087 D-alanine--poly(phosp 99.6 5.4E-15 1.2E-19 99.6 6.9 73 61-134 2-77 (78)
19 PF14573 PP-binding_2: Acyl-ca 99.4 2.8E-12 6E-17 87.9 6.8 78 59-138 8-91 (96)
20 TIGR01688 dltC D-alanine--poly 99.3 1.3E-12 2.9E-17 87.0 5.1 68 64-132 2-72 (73)
21 smart00823 PKS_PP Phosphopante 98.9 2E-08 4.4E-13 64.5 8.1 75 60-134 11-85 (86)
22 TIGR02813 omega_3_PfaA polyket 98.8 8E-09 1.7E-13 103.4 6.8 77 58-135 1304-1383(2582)
23 PRK06060 acyl-CoA synthetase; 98.5 3.2E-07 7E-12 81.6 8.3 76 61-136 545-620 (705)
24 TIGR03443 alpha_am_amid L-amin 98.2 2.8E-06 6.1E-11 80.7 7.4 76 59-135 846-921 (1389)
25 PRK10252 entF enterobactin syn 98.1 7E-06 1.5E-10 77.1 7.8 75 57-134 974-1048(1296)
26 PRK12467 peptide synthase; Pro 98.1 1.2E-05 2.5E-10 83.7 8.1 74 57-133 3601-3674(3956)
27 COG3433 Aryl carrier domain [S 98.1 6.7E-06 1.5E-10 54.5 4.2 69 66-136 3-71 (74)
28 TIGR02813 omega_3_PfaA polyket 98.0 6.4E-06 1.4E-10 83.2 5.3 76 58-134 1208-1286(2582)
29 PRK05691 peptide synthase; Val 97.9 5.4E-05 1.2E-09 79.3 8.7 77 57-136 582-658 (4334)
30 PRK12467 peptide synthase; Pro 97.8 5.4E-05 1.2E-09 78.9 7.8 75 57-134 1026-1100(3956)
31 PRK05691 peptide synthase; Val 97.8 5.8E-05 1.3E-09 79.1 7.4 75 57-134 4237-4311(4334)
32 PRK12316 peptide synthase; Pro 97.7 7.1E-05 1.5E-09 79.4 7.4 75 57-134 5068-5142(5163)
33 PRK12316 peptide synthase; Pro 97.7 0.00011 2.3E-09 78.1 7.5 76 57-135 2512-2587(5163)
34 PF07377 DUF1493: Protein of u 97.4 0.00045 9.8E-09 49.0 6.2 58 60-117 2-63 (111)
35 KOG1202 Animal-type fatty acid 96.6 0.001 2.2E-08 63.9 1.7 53 66-118 2009-2061(2376)
36 PF10501 Ribosomal_L50: Riboso 95.6 0.11 2.4E-06 36.8 7.9 75 58-133 5-81 (112)
37 TIGR02372 4_coum_CoA_lig 4-cou 95.2 0.077 1.7E-06 44.8 7.0 79 58-136 4-94 (386)
38 KOG2452 Formyltetrahydrofolate 92.3 0.33 7.2E-06 43.2 5.7 76 59-136 320-396 (881)
39 KOG1178 Non-ribosomal peptide 82.1 1.7 3.8E-05 41.6 4.0 53 81-133 615-667 (1032)
40 PF08766 DEK_C: DEK C terminal 77.7 4.8 0.0001 24.6 3.7 25 92-116 17-41 (54)
41 COG1669 Predicted nucleotidylt 67.4 32 0.00069 24.1 6.3 63 60-122 8-83 (97)
42 PF03471 CorC_HlyC: Transporte 45.2 31 0.00067 22.4 3.1 27 102-131 16-42 (81)
43 smart00151 SWIB SWI complex, B 38.9 63 0.0014 21.0 3.9 55 55-109 18-75 (77)
44 PLN00204 CP12 gene family prot 37.6 51 0.0011 24.1 3.5 18 57-74 52-69 (126)
45 COG1905 NuoE NADH:ubiquinone o 32.5 21 0.00045 27.1 0.8 66 64-137 94-159 (160)
46 PF00874 PRD: PRD domain; Int 32.0 34 0.00073 21.4 1.7 21 98-118 59-79 (89)
47 PRK10696 tRNA 2-thiocytidine b 28.5 1E+02 0.0022 24.4 4.2 46 60-111 10-58 (258)
48 PRK00157 rplL 50S ribosomal pr 28.5 56 0.0012 23.8 2.5 19 95-113 17-35 (123)
49 PF00763 THF_DHG_CYH: Tetrahyd 27.7 1.2E+02 0.0025 21.3 4.0 46 93-138 41-86 (117)
50 TIGR00855 L12 ribosomal protei 27.3 59 0.0013 23.8 2.4 20 94-113 17-36 (126)
51 PF09346 SMI1_KNR4: SMI1 / KNR 24.3 44 0.00095 22.2 1.2 17 100-116 5-21 (130)
52 PF13592 HTH_33: Winged helix- 24.2 51 0.0011 20.3 1.4 19 98-116 7-25 (60)
53 cd01807 GDX_N ubiquitin-like d 24.0 40 0.00087 21.3 0.9 36 58-93 18-61 (74)
54 PF10036 RLL: Putative carniti 23.8 1.5E+02 0.0033 23.8 4.4 49 88-139 124-172 (249)
55 PF05372 Delta_lysin: Delta ly 23.7 86 0.0019 16.4 1.9 17 121-137 6-22 (25)
56 smart00860 SMI1_KNR4 SMI1 / KN 23.2 65 0.0014 20.7 1.9 18 100-117 5-22 (129)
57 COG0222 RplL Ribosomal protein 22.6 85 0.0018 22.9 2.4 17 96-112 18-34 (124)
58 PRK14178 bifunctional 5,10-met 22.6 3.1E+02 0.0067 22.6 6.0 71 60-137 10-82 (279)
59 smart00213 UBQ Ubiquitin homol 22.5 55 0.0012 19.3 1.3 20 59-78 18-37 (64)
60 CHL00083 rpl12 ribosomal prote 21.3 90 0.0019 22.9 2.4 20 95-114 17-36 (131)
61 COG1151 6Fe-6S prismane cluste 21.1 1.1E+02 0.0024 27.9 3.3 28 88-115 464-493 (576)
62 PF08861 DUF1828: Domain of un 20.9 2.4E+02 0.0052 18.6 4.3 42 95-136 44-85 (90)
63 PF10678 DUF2492: Protein of u 20.9 2.1E+02 0.0045 19.2 3.9 38 96-133 20-58 (78)
64 PF00240 ubiquitin: Ubiquitin 20.5 50 0.0011 20.2 0.8 40 57-96 12-59 (69)
No 1
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=4.6e-22 Score=144.87 Aligned_cols=82 Identities=48% Similarity=0.725 Sum_probs=78.4
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHH
Q 032464 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 56 ~m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
|.+++++.++|..+++.+..+++ +.++++++|. |||+||||.|||+|+|||||||+||+++.+++.|++++++||+++
T Consensus 48 ~l~k~~v~~RVl~VVk~~dki~~-~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~ 126 (131)
T KOG1748|consen 48 CLAKKEVVDRVLDVVKKFDKIDP-SKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIADK 126 (131)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCc-cccchhhHHHHhcCCcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhc
Confidence 89999999999999999999999 6899999998 999999999999999999999999999999999999999999988
Q ss_pred HHhh
Q 032464 135 VEKK 138 (140)
Q Consensus 135 ~~~k 138 (140)
...+
T Consensus 127 ~d~k 130 (131)
T KOG1748|consen 127 PDVK 130 (131)
T ss_pred cccc
Confidence 7654
No 2
>PRK07117 acyl carrier protein; Validated
Probab=99.84 E-value=5.1e-21 Score=129.23 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=74.5
Q ss_pred CChHHHHHHHHHHHHHHh-CCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQL-ALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l-~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
|+++++.++|+++|++++ ++++ ++|+++++|.|||+|||+++|+++.+|++|||+||++++.++.||+++++||.+++
T Consensus 1 M~~~ei~~~v~~ii~e~~p~i~~-~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~~ 79 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLPDLDQ-HQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAKL 79 (79)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCH-HHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence 788999999999999999 7988 69999999999999999999999999999999999999999999999999998763
No 3
>PRK05828 acyl carrier protein; Validated
Probab=99.83 E-value=1.2e-20 Score=128.89 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=77.5
Q ss_pred CChHHHHHHHHHHHHH-HhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRR-QLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~V~~il~~-~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
|++++|.++|++++++ +++++. +.++++++|.+||+|||++++|+++||++|||++|++++.++.||+++++||.+++
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~~~-d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~ 79 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAVTL-DESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELK 79 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCCCc-ccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 7899999999999998 688887 68999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhc
Q 032464 136 EKKA 139 (140)
Q Consensus 136 ~~k~ 139 (140)
++++
T Consensus 80 ~~~~ 83 (84)
T PRK05828 80 KQKG 83 (84)
T ss_pred hccC
Confidence 8775
No 4
>PRK05350 acyl carrier protein; Provisional
Probab=99.81 E-value=4.3e-20 Score=124.73 Aligned_cols=79 Identities=24% Similarity=0.465 Sum_probs=75.6
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
|+++++.++|+++|++.+++++ ..++++++|. +||||||++++|+++||++|||+++++++..+.||+++++||.+++
T Consensus 2 m~~~~i~~~v~~ii~~~~~~~~-~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~ 80 (82)
T PRK05350 2 MTREEILERLRAILVELFEIDP-EDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLL 80 (82)
T ss_pred CCHHHHHHHHHHHHHHHhCCCH-HHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHh
Confidence 7899999999999999999998 6999999985 9999999999999999999999999999999999999999999987
Q ss_pred H
Q 032464 136 E 136 (140)
Q Consensus 136 ~ 136 (140)
+
T Consensus 81 ~ 81 (82)
T PRK05350 81 K 81 (82)
T ss_pred c
Confidence 5
No 5
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.80 E-value=1.1e-19 Score=122.31 Aligned_cols=81 Identities=43% Similarity=0.695 Sum_probs=76.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
|+++++.++|++++++.+++++ ..++++++|. +|||||+++++|++.+|++|||+++++++.++.|++++++||.+++
T Consensus 1 M~~~~i~~~l~~ii~~~~~~~~-~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 79 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGIEK-SEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKI 79 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHh
Confidence 7899999999999999999988 6899999998 6999999999999999999999999999999999999999999988
Q ss_pred Hhh
Q 032464 136 EKK 138 (140)
Q Consensus 136 ~~k 138 (140)
++|
T Consensus 80 ~~~ 82 (82)
T CHL00124 80 NKK 82 (82)
T ss_pred ccC
Confidence 764
No 6
>PRK07639 acyl carrier protein; Provisional
Probab=99.80 E-value=2.9e-19 Score=122.32 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCcccc--ccCCCHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENS--QNITTVQEAADLIEK 133 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l--~~~~TV~dl~~~I~~ 133 (140)
|+++++.++|+++|++++++++.++++++++|. +||+||+++++|+++||++|||+||++++ .++.||+++++||.+
T Consensus 1 M~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~ 80 (86)
T PRK07639 1 MRREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEE 80 (86)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHH
Confidence 789999999999999999987535899999997 89999999999999999999999999987 699999999999998
Q ss_pred HHHh
Q 032464 134 LVEK 137 (140)
Q Consensus 134 ~~~~ 137 (140)
+.+.
T Consensus 81 ~~~~ 84 (86)
T PRK07639 81 LQPL 84 (86)
T ss_pred hhcc
Confidence 7654
No 7
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.79 E-value=1.8e-19 Score=122.35 Aligned_cols=77 Identities=26% Similarity=0.455 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHHHh
Q 032464 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVEK 137 (140)
Q Consensus 60 ~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~ 137 (140)
.++.+++++++++++++++ ..|+++++|. +||||||++++|++.||++|||+|+++++.++.||+++++||.++++.
T Consensus 3 m~i~~~v~~iiae~l~v~~-~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~~~ 80 (82)
T PRK08172 3 MDIEARVKKVITSCIAVDV-DSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSLES 80 (82)
T ss_pred ccHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3899999999999999998 6999999996 999999999999999999999999999999999999999999998764
No 8
>PRK05883 acyl carrier protein; Validated
Probab=99.79 E-value=3.1e-19 Score=123.35 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=76.2
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHH
Q 032464 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 56 ~m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
++++.+|.++|+++|++.+++++ ..|+++++|. +||||||+++++++.||++|||+|+++++.++.||+++++||.++
T Consensus 9 ~~~~~~I~~~l~~iia~~l~v~~-~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~ 87 (91)
T PRK05883 9 TSSPSTVSATLLSILRDDLNVDL-TRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAK 87 (91)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCh-hhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 67899999999999999999998 6999999996 899999999999999999999999999999999999999999987
Q ss_pred HH
Q 032464 135 VE 136 (140)
Q Consensus 135 ~~ 136 (140)
+.
T Consensus 88 ~~ 89 (91)
T PRK05883 88 VR 89 (91)
T ss_pred cc
Confidence 64
No 9
>PRK12449 acyl carrier protein; Provisional
Probab=99.79 E-value=4.5e-19 Score=118.71 Aligned_cols=78 Identities=18% Similarity=0.464 Sum_probs=74.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
|+++++.++|++++++.+++++ ..++++++|. +|||||+++++|++++|++|||+++++++.++.|++++++||.+++
T Consensus 1 m~~~~i~~~l~~il~~~~~~~~-~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 79 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSYLS-LAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQRL 79 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCCCc-cccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence 7889999999999999999988 5899999996 9999999999999999999999999999999999999999998764
No 10
>PTZ00171 acyl carrier protein; Provisional
Probab=99.78 E-value=7.3e-19 Score=131.36 Aligned_cols=88 Identities=33% Similarity=0.508 Sum_probs=81.8
Q ss_pred cccccCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHH
Q 032464 51 RFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAAD 129 (140)
Q Consensus 51 r~~~~~m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~ 129 (140)
|-..+.|+++++.++|++++++.+++++ ++|+++++|. |||||||+++||++.||++|||+||++++.++.||+++++
T Consensus 60 ~~~~~~~~~~~v~~~l~eiiae~l~vd~-~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd 138 (148)
T PTZ00171 60 KSKQYLLSKEDVLTRVKKVVKNFEKVDA-SKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAID 138 (148)
T ss_pred cccccccCHHHHHHHHHHHHHHHhCCCH-hhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHH
Confidence 4455679999999999999999999988 6999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 032464 130 LIEKLVEKKA 139 (140)
Q Consensus 130 ~I~~~~~~k~ 139 (140)
||.++.++|.
T Consensus 139 ~V~~~~~~~~ 148 (148)
T PTZ00171 139 YIEQNNMAKT 148 (148)
T ss_pred HHHHHHhccC
Confidence 9999887763
No 11
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.73 E-value=7.9e-18 Score=111.92 Aligned_cols=74 Identities=46% Similarity=0.701 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHH
Q 032464 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 60 ~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
+++.++|++++++.+++++ ..++++++|. +|||||+++++|++.+|++|||++|++++.++.|++++++||.++
T Consensus 2 ~~i~~~l~~il~~~~~~~~-~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 76 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDE-DQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEEN 76 (77)
T ss_pred hHHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhc
Confidence 5789999999999999988 6899999996 899999999999999999999999999999999999999999864
No 12
>PRK06508 acyl carrier protein; Provisional
Probab=99.73 E-value=7.9e-18 Score=116.94 Aligned_cols=80 Identities=33% Similarity=0.494 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCccccc-----------cCCCHHHH
Q 032464 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQ-----------NITTVQEA 127 (140)
Q Consensus 60 ~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l~-----------~~~TV~dl 127 (140)
..+.++|+++|++.+++++ ..|+++++|. +||||||++++|++.||++|||+|+++++. .+.|++++
T Consensus 2 ~~i~ekv~~Ilae~~~vd~-~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~ 80 (93)
T PRK06508 2 SSTFDKVADIIAETSDIPR-DTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNL 80 (93)
T ss_pred hHHHHHHHHHHHHHhCCCH-HHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHH
Confidence 4688999999999999998 6999999986 999999999999999999999999999864 55688999
Q ss_pred HHHHHHHHHhhcC
Q 032464 128 ADLIEKLVEKKAA 140 (140)
Q Consensus 128 ~~~I~~~~~~k~a 140 (140)
+++|.+++++|+|
T Consensus 81 ~~~i~~~~~~~~~ 93 (93)
T PRK06508 81 CAKIDELVAAKAA 93 (93)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999876
No 13
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=1.3e-17 Score=112.14 Aligned_cols=77 Identities=44% Similarity=0.676 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHH
Q 032464 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 58 ~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
..+.+.++|++++.+.++.+. ..+++++.|. +||+|||++++|++.||++|||++|++++.++.|++++++||.++.
T Consensus 2 ~~~~~~~~i~~ii~e~l~~~~-~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~~ 79 (80)
T COG0236 2 QMEAIEERVKDIIAEQLGVDE-EEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEELL 79 (80)
T ss_pred chHHHHHHHHHHHHHHhCCch-hhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHhc
Confidence 356799999999999999996 6899999998 7999999999999999999999999999999999999999998864
No 14
>PRK09184 acyl carrier protein; Provisional
Probab=99.71 E-value=4e-17 Score=112.51 Aligned_cols=78 Identities=17% Similarity=0.402 Sum_probs=68.6
Q ss_pred ChHHHHHHHHHHHHHHhCC---CCCCCCCCCCCc-c-ccCCChHHHHHHHHHHHHHhCCCcCcccc---ccCCCHHHHHH
Q 032464 58 AKPETVQKVCEIVRRQLAL---PAETELTSESKF-S-ALGADSLDTVEIVMSLEEEFGIGVEEENS---QNITTVQEAAD 129 (140)
Q Consensus 58 ~~~ei~~~V~~il~~~l~i---~~~~eI~~ds~l-~-dLGlDSLd~vELv~~LEeeFgI~i~~~~l---~~~~TV~dl~~ 129 (140)
+.+++.++|+++|++.+++ ++ ++|+++++| . +||+||+++++|++.+|++|||+|++++. ..+.||+++++
T Consensus 3 ~~~~l~~~l~~~I~e~l~~~~i~~-~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~ 81 (89)
T PRK09184 3 SMTALERELAELIVEELNLEDVQP-ESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAA 81 (89)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCCH-HHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHH
Confidence 3468999999999999985 66 699999998 3 79999999999999999999999987654 45899999999
Q ss_pred HHHHHHH
Q 032464 130 LIEKLVE 136 (140)
Q Consensus 130 ~I~~~~~ 136 (140)
||.++..
T Consensus 82 ~I~~~~~ 88 (89)
T PRK09184 82 YVAAHRT 88 (89)
T ss_pred HHHHhhc
Confidence 9988653
No 15
>PRK07081 acyl carrier protein; Provisional
Probab=99.67 E-value=1.7e-16 Score=107.83 Aligned_cols=76 Identities=18% Similarity=0.408 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhCC--CCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccc--cCCCHHHHHHHHHHHHHhh
Q 032464 63 VQKVCEIVRRQLAL--PAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQ--NITTVQEAADLIEKLVEKK 138 (140)
Q Consensus 63 ~~~V~~il~~~l~i--~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~--~~~TV~dl~~~I~~~~~~k 138 (140)
.++|+++|.+.++. ++ ++++++++|.+||+||+++++|++.||++|||+||++++. ++.||++++++|.++++++
T Consensus 2 ~~~i~~ii~~~~~~~~~~-~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~~~ 80 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPI-DSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQDAE 80 (83)
T ss_pred hHHHHHHHHHHHcCCCCH-HhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHhhh
Confidence 57899999998555 44 5899999999999999999999999999999999999985 5999999999999998776
Q ss_pred c
Q 032464 139 A 139 (140)
Q Consensus 139 ~ 139 (140)
+
T Consensus 81 ~ 81 (83)
T PRK07081 81 K 81 (83)
T ss_pred c
Confidence 5
No 16
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.66 E-value=2.3e-16 Score=104.88 Aligned_cols=75 Identities=51% Similarity=0.740 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHH
Q 032464 60 PETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 60 ~ei~~~V~~il~~~l~i~~~~eI~~ds~l-~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
.++.++|++++++.+++++ ..++++++| .++|+||+++++|+..+|++||++++++++.++.|+++++++|.++.
T Consensus 2 ~~i~~~l~~~l~~~l~~~~-~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 77 (78)
T PRK00982 2 SEIFEKVKKIIVEQLGVDE-EEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQ 77 (78)
T ss_pred hHHHHHHHHHHHHHHCCCH-HHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHhc
Confidence 4688999999999999987 699999999 59999999999999999999999999999999999999999998753
No 17
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.59 E-value=5.2e-15 Score=94.83 Aligned_cols=67 Identities=34% Similarity=0.587 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHH
Q 032464 64 QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLI 131 (140)
Q Consensus 64 ~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I 131 (140)
++|++++++.+++++ .+++++++|.++|+||+..++++..||++||++++..++.+.+|+++++++|
T Consensus 1 e~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDP-EEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSG-GCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCH-hhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 579999999999887 6999999999999999999999999999999999999999999999999986
No 18
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=99.58 E-value=5.4e-15 Score=99.58 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCccccC-CChHHHHHHHHHHHHHhCCCcCccccc--cCCCHHHHHHHHHHH
Q 032464 61 ETVQKVCEIVRRQLALPAETELTSESKFSALG-ADSLDTVEIVMSLEEEFGIGVEEENSQ--NITTVQEAADLIEKL 134 (140)
Q Consensus 61 ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLG-lDSLd~vELv~~LEeeFgI~i~~~~l~--~~~TV~dl~~~I~~~ 134 (140)
++.++|+++|.+.++.+. ..++++++|.+.| +||+++++|++.||++|||+||++++. ++.||+.+++||+++
T Consensus 2 ~i~~~I~~iL~~~~~~~~-~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~l 77 (78)
T PRK05087 2 DFKEQVLDILEELTGEDI-VSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEEL 77 (78)
T ss_pred cHHHHHHHHHHHHhCCCh-hccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHHc
Confidence 478999999999998876 5789999999555 899999999999999999999999986 499999999999875
No 19
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=99.35 E-value=2.8e-12 Score=87.87 Aligned_cols=78 Identities=33% Similarity=0.465 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc------ccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHH
Q 032464 59 KPETVQKVCEIVRRQLALPAETELTSESKFS------ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIE 132 (140)
Q Consensus 59 ~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~------dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~ 132 (140)
-..+.++|..++++++.-. .++++.++|. ++-|||||.||+++.+|++|+|.||++.+.+++|++++++||.
T Consensus 8 ~nav~~~i~g~~kkyl~~~--~~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadfvv 85 (96)
T PF14573_consen 8 INAVTEYILGMLKKYLSEG--EEITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADFVV 85 (96)
T ss_dssp HHHHHHHHHHHHHTTB-TT------TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC--CccChhhhhHHhccccccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHHHH
Confidence 3568889999999988654 3688887774 5779999999999999999999999999999999999999998
Q ss_pred HHHHhh
Q 032464 133 KLVEKK 138 (140)
Q Consensus 133 ~~~~~k 138 (140)
+..+..
T Consensus 86 ~~r~~~ 91 (96)
T PF14573_consen 86 QERQSA 91 (96)
T ss_dssp HHHHS-
T ss_pred HHHHhh
Confidence 876543
No 20
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=99.35 E-value=1.3e-12 Score=86.99 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCccccCC-ChHHHHHHHHHHHHHhCCCcCcccc--ccCCCHHHHHHHHH
Q 032464 64 QKVCEIVRRQLALPAETELTSESKFSALGA-DSLDTVEIVMSLEEEFGIGVEEENS--QNITTVQEAADLIE 132 (140)
Q Consensus 64 ~~V~~il~~~l~i~~~~eI~~ds~l~dLGl-DSLd~vELv~~LEeeFgI~i~~~~l--~~~~TV~dl~~~I~ 132 (140)
++|++||.+..+.+. ....++++|.+.|+ ||+++|+|+..||++|||++|++++ .++.|++.++++|+
T Consensus 2 e~i~eIL~~i~~~~~-~~~~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v~ 72 (73)
T TIGR01688 2 NGVLDILAEVTGSDD-VKENPDLELFEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLE 72 (73)
T ss_pred hHHHHHHHHHhcCcc-cccCccHHHHHccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHHh
Confidence 678999999987654 35689999999996 9999999999999999999999997 59999999999986
No 21
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=98.86 E-value=2e-08 Score=64.53 Aligned_cols=75 Identities=24% Similarity=0.237 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHH
Q 032464 60 PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 60 ~ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
..+.+.+...+...++......++.+++|.++|+||+..+++...++++||++++..++....|+..+++++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 11 RLLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 346777888888888877632358999999999999999999999999999999999988899999999998764
No 22
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.80 E-value=8e-09 Score=103.39 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhC--CCcCccccccCCCHHHHHHHHHHH
Q 032464 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFG--IGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 58 ~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFg--I~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
+..++.++|+++++++++++. +.++++++|. |||+||++.+||++.+|++|+ ++++++++.+++|++++++|+...
T Consensus 1304 ~~~~v~~~vl~vvae~tgyp~-e~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~~~ 1382 (2582)
T TIGR02813 1304 DLIQIQNVMLEVVADKTGYPT-EMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQSK 1382 (2582)
T ss_pred cHHHHHHHHHHHHHHHhCCCH-HHcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHhhc
Confidence 457999999999999999998 6999999998 999999999999999999999 899999999999999999999875
Q ss_pred H
Q 032464 135 V 135 (140)
Q Consensus 135 ~ 135 (140)
.
T Consensus 1383 ~ 1383 (2582)
T TIGR02813 1383 V 1383 (2582)
T ss_pred c
Confidence 4
No 23
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.53 E-value=3.2e-07 Score=81.62 Aligned_cols=76 Identities=24% Similarity=0.303 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHHH
Q 032464 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVE 136 (140)
Q Consensus 61 ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~ 136 (140)
.+.+.|++.+++.++.+....|+++.+|.+||+|||..+++...|++.||++++...+.+..|+.++++++.+.+.
T Consensus 545 ~~~~~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~~ 620 (705)
T PRK06060 545 LVVDAVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAELA 620 (705)
T ss_pred HHHHHHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHhc
Confidence 3566788999999998643579999999999999999999999999999999999999999999999999988763
No 24
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.23 E-value=2.8e-06 Score=80.66 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHH
Q 032464 59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 59 ~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
..++.+.|.+++.+.++.+. ..++.+++|.++|.|||..++++..|+++||+.++..++.+..|+.+++++|....
T Consensus 846 ~~~~~~~l~~~~~~vl~~~~-~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~ 921 (1389)
T TIGR03443 846 FTETEREIRDLWLELLPNRP-ATISPDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLK 921 (1389)
T ss_pred CCHHHHHHHHHHHHHhCCCc-cccCcCcchhhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhh
Confidence 35678889999999999876 57999999999999999999999999999999999999999999999999997654
No 25
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.13 E-value=7e-06 Score=77.12 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=68.6
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
....++...|.+++++.++++ .++.+++|+++|.|||..++|...|++.||++++..++....|+.+++++|.+.
T Consensus 974 ~~~~~~e~~l~~~~~~~l~~~---~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252 974 APKTGTETIIAAAFSSLLGCD---VVDADADFFALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---CCCCCcCHHHcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence 345678889999999999985 588999999999999999999999999999999999999999999999999764
No 26
>PRK12467 peptide synthase; Provisional
Probab=98.05 E-value=1.2e-05 Score=83.72 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEK 133 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~ 133 (140)
....++++.+.+++++.|+++ .|..+++|++||.|||..++|+..|+++||++++..++.+..|+.++++++..
T Consensus 3601 ~p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3601 APRSEVEQQLAAIWADVLGVE---QVGVTDNFFELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---CCCCCcchhcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 456688999999999999985 48899999999999999999999999999999999999999999999999865
No 27
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.05 E-value=6.7e-06 Score=54.49 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHHH
Q 032464 66 VCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVE 136 (140)
Q Consensus 66 V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~ 136 (140)
+++.+.+.++..+ .+++++.+|.+.|+||+-++.++....+. |..|+..++..-.|++...+++.....
T Consensus 3 Lr~~~~~Ll~e~~-~~l~dqeNLi~~GLDSiR~M~L~~~wR~~-G~~i~F~~La~~PTl~aW~qLl~~~~~ 71 (74)
T COG3433 3 LREQIAELLGESV-EELDDQENLIDYGLDSIRMMALLERWRKR-GADIDFAQLAANPTLAAWWQLLSTRSK 71 (74)
T ss_pred HHHHHHHHHcCCh-hhcCchhhHHHhchhHHHHHHHHHHHHHc-CCcccHHHHHhCccHHHHHHHHHhccc
Confidence 4566777777666 68999999999999999999999999887 999999999999999999999876543
No 28
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.02 E-value=6.4e-06 Score=83.16 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=69.8
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhC--CCcCccccccCCCHHHHHHHHHHH
Q 032464 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFG--IGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 58 ~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFg--I~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
...++.+.+.+++++++|.+. +.++++.++. |||+||+..+||+..++++|+ .+++++++.+++|++++++|+...
T Consensus 1208 ~~~~~~~~~l~vvae~tgyp~-e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~~~~e~~pe~l~~~rTl~~iv~~~~~~ 1286 (2582)
T TIGR02813 1208 NDSAIQQVMMEVVAEKTGYPT-EMLELEMDMEADLGIDSIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQSK 1286 (2582)
T ss_pred chhHHHHHHHHHHHhhccCCh-HhcccccccccccCcchhhhHHhhhhhhhhccCCCCCChhhhcccccHHHHHHhhccc
Confidence 456799999999999999998 6899999999 999999999999999999998 788999999999999999998543
No 29
>PRK05691 peptide synthase; Validated
Probab=97.85 E-value=5.4e-05 Score=79.32 Aligned_cols=77 Identities=18% Similarity=0.346 Sum_probs=69.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVE 136 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~ 136 (140)
....++.+.++++++++|+++ .|..+.+|.+||.|||..++++..++++||+.++..++....|+.++++++.....
T Consensus 582 ~~~~~~e~~l~~~~~~vL~~~---~i~~~~~ff~lGgdSL~a~~l~~~l~~~~g~~l~v~~i~~~~ti~~la~~l~~~~~ 658 (4334)
T PRK05691 582 ASGDELQARIAAIWCEQLKVE---QVAADDHFFLLGGNSIAATQVVARLRDELGIDLNLRQLFEAPTLAAFSAAVARQLA 658 (4334)
T ss_pred CCcchHHHHHHHHHHHHhCCC---CCCcCCchhhcccchHHHHHHHHHHHHHhCCcCchhhhhcccchHHHHHHHHHhhc
Confidence 445678889999999999974 58899999999999999999999999999999999999999999999999976543
No 30
>PRK12467 peptide synthase; Provisional
Probab=97.80 E-value=5.4e-05 Score=78.93 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=68.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
....++...+.+++++.|+++ .|..+++|++||.|||..++++..++++||+.++..++.+..|+.++++++...
T Consensus 1026 ~p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467 1026 APQTELEKRLAAIWADVLKVE---RVGLTDNFFELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---CCCCCCCchhccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence 455678899999999999974 588999999999999999999999999999999999999999999999998754
No 31
>PRK05691 peptide synthase; Validated
Probab=97.77 E-value=5.8e-05 Score=79.08 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=69.3
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
....+++.+|.+++++.|+++ .|..+++|++||.|||..++++..+++.||++++..++.+..|+.+++++|+..
T Consensus 4237 ~p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691 4237 APRNELEQTLATIWADVLKVE---RVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---cCCCCCchhhcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence 456789999999999999974 588999999999999999999999999999999999999999999999999753
No 32
>PRK12316 peptide synthase; Provisional
Probab=97.73 E-value=7.1e-05 Score=79.44 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
....++..++.+++++.|+++ .|..+++|++||.|||..+.|+..|+++||++++..++....|+++++++|...
T Consensus 5068 ~~~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~~ 5142 (5163)
T PRK12316 5068 APRSELEQQVAAIWAEVLQLE---RVGLDDNFFELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAA 5142 (5163)
T ss_pred CCCcHHHHHHHHHHHHHhCCC---CCCCCCChhhccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHhc
Confidence 345678899999999999875 588999999999999999999999999999999999999999999999999653
No 33
>PRK12316 peptide synthase; Provisional
Probab=97.66 E-value=0.00011 Score=78.13 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=68.8
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
....++.+++.+++++.++++ .|..+.+|.+||.|||..++++..++++||+.++..++.+..|+.+++..+....
T Consensus 2512 ~p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~~ 2587 (5163)
T PRK12316 2512 APQEGLEQRLAAIWQAVLKVE---QVGLDDHFFELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESGQ 2587 (5163)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---ccCCCCchhhhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhhhh
Confidence 455678899999999999984 5889999999999999999999999999999999999999999999999887543
No 34
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=97.45 E-value=0.00045 Score=49.01 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhCCC---CCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCCcCccc
Q 032464 60 PETVQKVCEIVRRQLALP---AETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEEN 117 (140)
Q Consensus 60 ~ei~~~V~~il~~~l~i~---~~~eI~~ds~l~-dLGlDSLd~vELv~~LEeeFgI~i~~~~ 117 (140)
+++.++|.+.|.+..+.. ....+++++.|. |||++--+..+++....++|+|.+..=+
T Consensus 2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~~f~ 63 (111)
T PF07377_consen 2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLSDFD 63 (111)
T ss_pred chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcCccC
Confidence 688999999999999873 236899999997 9999999999999999999999876544
No 35
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=96.59 E-value=0.001 Score=63.86 Aligned_cols=53 Identities=26% Similarity=0.410 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCcccc
Q 032464 66 VCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENS 118 (140)
Q Consensus 66 V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l 118 (140)
+.+-|+..+|+.+...++.+++|.|||+|||+-+||--.||.+|++-+...++
T Consensus 2009 LiatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlVLS~qEi 2061 (2376)
T KOG1202|consen 2009 LIATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLVLSAQEI 2061 (2376)
T ss_pred HHHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhceeeeHHHH
Confidence 67778888998765689999999999999999999999999999999887665
No 36
>PF10501 Ribosomal_L50: Ribosomal subunit 39S; InterPro: IPR018305 This entry represents the L50 protein from the mitochondrial 39S ribosomal subunit. L50 appears to be a secondary RNA-binding protein []. The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units []. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [].; GO: 0005739 mitochondrion
Probab=95.57 E-value=0.11 Score=36.78 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCC-CCCCCccccCC-ChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHH
Q 032464 58 AKPETVQKVCEIVRRQLALPAETEL-TSESKFSALGA-DSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEK 133 (140)
Q Consensus 58 ~~~ei~~~V~~il~~~l~i~~~~eI-~~ds~l~dLGl-DSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~ 133 (140)
..+++.+.|.+..++.++.+. ... ..+..+.++-+ |--.-..++..+.+.+|..||+..+..+.|++++++++.+
T Consensus 5 ~~e~l~~~i~e~~~e~~~~~~-~~~~~~~~~~~~~~l~D~~~KF~~lKrl~~~tGh~ipD~~L~~~~T~~dl~~~~~~ 81 (112)
T PF10501_consen 5 PPEDLEEIIEESAKEVLGAEG-FGSQSWNNDWLDISLEDLQLKFAFLKRLQQLTGHRIPDSKLHSIHTVGDLLNFYEK 81 (112)
T ss_pred CHHHHHHHHHHHHHHHhcccc-cccccCCccccccccCCHHHHHHHHHHHHHHHCCCCCcHHHHhcCCHHHHHHHHHH
Confidence 457788889999999888654 222 34455555555 4446789999999999999999999999999999999965
No 37
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=95.16 E-value=0.077 Score=44.83 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHHHhCCC--------CCCCCCCCCCcc--ccCCChHHHHHHHHHHHHHhCCCc-Cccc-cccCCCHH
Q 032464 58 AKPETVQKVCEIVRRQLALP--------AETELTSESKFS--ALGADSLDTVEIVMSLEEEFGIGV-EEEN-SQNITTVQ 125 (140)
Q Consensus 58 ~~~ei~~~V~~il~~~l~i~--------~~~eI~~ds~l~--dLGlDSLd~vELv~~LEeeFgI~i-~~~~-l~~~~TV~ 125 (140)
+.+.|...+..+|+..+.-- ....+..|+.+. .+|+|||..++|..++-+-|++.= ..++ +..-++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (386)
T TIGR02372 4 DAEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSDTGTEDYLLVRRRIG 83 (386)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcccccchhhhhhhhccHH
Confidence 46778888888888887421 112378888885 799999999999999999999942 2222 45667999
Q ss_pred HHHHHHHHHHH
Q 032464 126 EAADLIEKLVE 136 (140)
Q Consensus 126 dl~~~I~~~~~ 136 (140)
+.+++|.+.-+
T Consensus 84 ~~~~~~~~~~~ 94 (386)
T TIGR02372 84 EWVDLIAHHST 94 (386)
T ss_pred HHHHHHHhcCC
Confidence 99999976543
No 38
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=92.30 E-value=0.33 Score=43.18 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhC-CCcCccccccCCCHHHHHHHHHHHHH
Q 032464 59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFG-IGVEEENSQNITTVQEAADLIEKLVE 136 (140)
Q Consensus 59 ~~ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFg-I~i~~~~l~~~~TV~dl~~~I~~~~~ 136 (140)
...+.++++.+....|..- .++..+++|+.-|..|.|.+.|+..+.+..| .+++.+++..-.|+++.++.+.+++.
T Consensus 320 e~~t~~~~~~iw~~il~kv--~~v~~~tdff~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~i~~~ir~lr 396 (881)
T KOG2452|consen 320 ELVTAEAVRSVWQRILPKV--LEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKLR 396 (881)
T ss_pred HHHHHHHHHHHHHHhcchh--eeecccchHhhcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhHHHHHHHHhc
Confidence 3457788888888877533 3688999999999999999999999998887 89999998888999999999987764
No 39
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.09 E-value=1.7 Score=41.64 Aligned_cols=53 Identities=19% Similarity=0.148 Sum_probs=46.9
Q ss_pred CCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHH
Q 032464 81 ELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEK 133 (140)
Q Consensus 81 eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~ 133 (140)
.++++++|+++|.||+..+-++..+...+.++.|..-.....|+..+..-+..
T Consensus 615 ~~s~d~~fF~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~ 667 (1032)
T KOG1178|consen 615 IVSPDSSFFQLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIR 667 (1032)
T ss_pred ccCCCcchhhhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhh
Confidence 57899999999999999999999999999999999888888888777665544
No 40
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=77.69 E-value=4.8 Score=24.63 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=16.2
Q ss_pred CCChHHHHHHHHHHHHHhCCCcCcc
Q 032464 92 GADSLDTVEIVMSLEEEFGIGVEEE 116 (140)
Q Consensus 92 GlDSLd~vELv~~LEeeFgI~i~~~ 116 (140)
+++++..-.+...||++||+++.+.
T Consensus 17 dl~~vT~k~vr~~Le~~~~~dL~~~ 41 (54)
T PF08766_consen 17 DLDTVTKKQVREQLEERFGVDLSSR 41 (54)
T ss_dssp -GGG--HHHHHHHHHHH-SS--SHH
T ss_pred CHhHhhHHHHHHHHHHHHCCCcHHH
Confidence 3567888999999999999988753
No 41
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=67.43 E-value=32 Score=24.05 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhCCCC--------CCCCCCCCCcc-----ccCCChHHHHHHHHHHHHHhCCCcCccccccCC
Q 032464 60 PETVQKVCEIVRRQLALPA--------ETELTSESKFS-----ALGADSLDTVEIVMSLEEEFGIGVEEENSQNIT 122 (140)
Q Consensus 60 ~ei~~~V~~il~~~l~i~~--------~~eI~~ds~l~-----dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~ 122 (140)
.++..++...+++..|+.. -++-+|++++. .-|..-++++++...|++-||+.++--.-..+.
T Consensus 8 ~~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~~~ll~~~~l~~~L~~llg~~VDL~t~~ai~ 83 (97)
T COG1669 8 KKILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPGKTLLDLVRLEDELSDLLGRKVDLVTKDAIH 83 (97)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCCccHHHHHHHHHHHHHHhCCeeeeecccccC
Confidence 3456778888887765532 13556777764 347899999999999999999998764433333
No 42
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=45.18 E-value=31 Score=22.36 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCcCccccccCCCHHHHHHHH
Q 032464 102 VMSLEEEFGIGVEEENSQNITTVQEAADLI 131 (140)
Q Consensus 102 v~~LEeeFgI~i~~~~l~~~~TV~dl~~~I 131 (140)
+..+++.||++++.+ +..|++.++-..
T Consensus 16 l~~l~~~~~~~l~~~---~~~Tl~G~i~~~ 42 (81)
T PF03471_consen 16 LDDLNELLGLDLPEE---DYDTLGGLILEQ 42 (81)
T ss_dssp HHHHHHHHTS-TTTT---TTSBHHHHHHHH
T ss_pred HHHHHHHHCcCCCcc---chhhHHHHHHHH
Confidence 356789999999985 456988876543
No 43
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=38.92 E-value=63 Score=20.99 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=41.4
Q ss_pred cCCChHHHHHHHHHHHHHHhCCCCC--CCCCCCCCcc-ccCCChHHHHHHHHHHHHHh
Q 032464 55 SCSAKPETVQKVCEIVRRQLALPAE--TELTSESKFS-ALGADSLDTVEIVMSLEEEF 109 (140)
Q Consensus 55 ~~m~~~ei~~~V~~il~~~l~i~~~--~eI~~ds~l~-dLGlDSLd~vELv~~LEeeF 109 (140)
..+++.++...+.+.|++.-=.++. ..|..|..|. -+|-|.+.+.++...|...|
T Consensus 18 ~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl 75 (77)
T smart00151 18 PEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHL 75 (77)
T ss_pred CcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHc
Confidence 4588999999999999966222321 2477888887 46889999999888887664
No 44
>PLN00204 CP12 gene family protein; Provisional
Probab=37.64 E-value=51 Score=24.10 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=13.1
Q ss_pred CChHHHHHHHHHHHHHHh
Q 032464 57 SAKPETVQKVCEIVRRQL 74 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l 74 (140)
++.+.+.++|.+-|++--
T Consensus 52 a~~~~L~e~Ie~aI~eAr 69 (126)
T PLN00204 52 AAPEGISEKVEKSIKEAE 69 (126)
T ss_pred cCCccHHHHHHHHHHHHH
Confidence 556678888888887753
No 45
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=32.46 E-value=21 Score=27.15 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHHHh
Q 032464 64 QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVEK 137 (140)
Q Consensus 64 ~~V~~il~~~l~i~~~~eI~~ds~l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~ 137 (140)
+.|.+.+.+.+++.+ .+.++|-.|. |.-++=+......=-+-|+++.+.. .|.+.+.+.+++..++
T Consensus 94 ~~l~~~l~~~lgi~~-gett~DG~ft------l~~v~ClGaC~~AP~vmind~~~~~-lt~e~l~eil~~~~~~ 159 (160)
T COG1905 94 EALLKALEKKLGIKP-GETTADGKFT------LEPVECLGACGQAPVVMINDDVYGR-LTPEKLEEILEKLKAK 159 (160)
T ss_pred HHHHHHHHHHhCCCC-CCcCCCCeEE------EeeeeeecccccCCEEEECCchhcc-CCHHHHHHHHHHHhcC
Confidence 557788888899998 6899998884 2222222222222223345554444 7777777777776554
No 46
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=31.96 E-value=34 Score=21.36 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCCCcCcccc
Q 032464 98 TVEIVMSLEEEFGIGVEEENS 118 (140)
Q Consensus 98 ~vELv~~LEeeFgI~i~~~~l 118 (140)
+-++...+++.||++++++++
T Consensus 59 a~~~~~~l~~~~~i~~~~~Ei 79 (89)
T PF00874_consen 59 AKEICERLEKRYGITLPDDEI 79 (89)
T ss_dssp HHHHHHHHHHHHTS-S-HHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHH
Confidence 456888899999999999875
No 47
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=28.51 E-value=1e+02 Score=24.38 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCcc---ccCCChHHHHHHHHHHHHHhCC
Q 032464 60 PETVQKVCEIVRRQLALPAETELTSESKFS---ALGADSLDTVEIVMSLEEEFGI 111 (140)
Q Consensus 60 ~ei~~~V~~il~~~l~i~~~~eI~~ds~l~---dLGlDSLd~vELv~~LEeeFgI 111 (140)
..+..++.+.|.++- -+.+..++. .-|.||+.++-++..+.+++++
T Consensus 10 ~~~~~~v~~~i~~~~------li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~ 58 (258)
T PRK10696 10 KRLRRQVGQAIADFN------MIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPI 58 (258)
T ss_pred HHHHHHHHHHHHHcC------CCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCC
Confidence 345666666666542 233344443 7799999999999988877654
No 48
>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed
Probab=28.49 E-value=56 Score=23.76 Aligned_cols=19 Identities=42% Similarity=0.746 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHhCCCc
Q 032464 95 SLDTVEIVMSLEEEFGIGV 113 (140)
Q Consensus 95 SLd~vELv~~LEeeFgI~i 113 (140)
=+...||+-.||++|||.-
T Consensus 17 llE~~eLv~~lee~fgv~a 35 (123)
T PRK00157 17 VLELSELVKALEEKFGVSA 35 (123)
T ss_pred HHHHHHHHHHHHHHcCCCc
Confidence 4677899999999999974
No 49
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=27.68 E-value=1.2e+02 Score=21.28 Aligned_cols=46 Identities=28% Similarity=0.270 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHHHhh
Q 032464 93 ADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVEKK 138 (140)
Q Consensus 93 lDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~k 138 (140)
-+|..++......=+++||++..-.+..-.|-+++.+.|.++-+.+
T Consensus 41 ~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~ 86 (117)
T PF00763_consen 41 PASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDP 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-T
T ss_pred hhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 4789999999999999999999988888889999999998876543
No 50
>TIGR00855 L12 ribosomal protein L7/L12. THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.
Probab=27.28 E-value=59 Score=23.75 Aligned_cols=20 Identities=40% Similarity=0.708 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHHHhCCCc
Q 032464 94 DSLDTVEIVMSLEEEFGIGV 113 (140)
Q Consensus 94 DSLd~vELv~~LEeeFgI~i 113 (140)
.=|...||+-.||++|||.-
T Consensus 17 TllE~~eLv~~lee~fgV~a 36 (126)
T TIGR00855 17 TVLELSELVKALEEKFGVSA 36 (126)
T ss_pred CHHHHHHHHHHHHHhcCCCc
Confidence 34678899999999999974
No 51
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=24.26 E-value=44 Score=22.22 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=11.6
Q ss_pred HHHHHHHHHhCCCcCcc
Q 032464 100 EIVMSLEEEFGIGVEEE 116 (140)
Q Consensus 100 ELv~~LEeeFgI~i~~~ 116 (140)
+=+..+|+++|+.+|++
T Consensus 5 ~~I~~~E~~lg~~LP~~ 21 (130)
T PF09346_consen 5 EEIQELEEKLGVRLPDD 21 (130)
T ss_dssp HHHHHHHHHHTS---HH
T ss_pred HHHHHHHHHhCCCCcHH
Confidence 45788999999999976
No 52
>PF13592 HTH_33: Winged helix-turn helix
Probab=24.23 E-value=51 Score=20.26 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhCCCcCcc
Q 032464 98 TVEIVMSLEEEFGIGVEEE 116 (140)
Q Consensus 98 ~vELv~~LEeeFgI~i~~~ 116 (140)
.-+|...|+++|||.+...
T Consensus 7 ~~~i~~~I~~~fgv~ys~~ 25 (60)
T PF13592_consen 7 LKEIAAYIEEEFGVKYSPS 25 (60)
T ss_pred HHHHHHHHHHHHCCEEcHH
Confidence 4578889999999988654
No 53
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=23.98 E-value=40 Score=21.32 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHHHHHhCCCCC--------CCCCCCCCccccCC
Q 032464 58 AKPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGA 93 (140)
Q Consensus 58 ~~~ei~~~V~~il~~~l~i~~~--------~eI~~ds~l~dLGl 93 (140)
...+++..|++.|++..|++++ ..+.++..|.++|+
T Consensus 18 ~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i 61 (74)
T cd01807 18 SEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSI 61 (74)
T ss_pred CCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCC
Confidence 4567888899999999888762 24667777777776
No 54
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=23.83 E-value=1.5e+02 Score=23.77 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=41.1
Q ss_pred ccccCCChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHHHhhc
Q 032464 88 FSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVEKKA 139 (140)
Q Consensus 88 l~dLGlDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~k~ 139 (140)
+..+.++|-++.+-+..|-..+||...+ ..+.++..++.+|.+++..++
T Consensus 124 l~~ld~~s~~f~~gv~~La~lL~i~~h~---d~~v~l~a~~~~i~~~l~~~~ 172 (249)
T PF10036_consen 124 LDNLDFNSPEFKAGVRALASLLQIPRHP---DHLVTLKAACKLIKEKLSPEA 172 (249)
T ss_pred ccccCCCCHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHhchhh
Confidence 4478999999999999999999999877 446788899999988876543
No 55
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=23.67 E-value=86 Score=16.39 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHHHHh
Q 032464 121 ITTVQEAADLIEKLVEK 137 (140)
Q Consensus 121 ~~TV~dl~~~I~~~~~~ 137 (140)
+.|++|++.+|.+-+++
T Consensus 6 isTIgdfvKlI~~TV~K 22 (25)
T PF05372_consen 6 ISTIGDFVKLIIETVKK 22 (25)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46889999998876654
No 56
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=23.20 E-value=65 Score=20.68 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCCcCccc
Q 032464 100 EIVMSLEEEFGIGVEEEN 117 (140)
Q Consensus 100 ELv~~LEeeFgI~i~~~~ 117 (140)
+-+..+|+++|+.+|.+-
T Consensus 5 ~~i~~~e~~lg~~LP~~y 22 (129)
T smart00860 5 EEIAELEKKLGIKLPEDY 22 (129)
T ss_pred HHHHHHHHHHCCCCCHHH
Confidence 567889999999999764
No 57
>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]
Probab=22.61 E-value=85 Score=22.92 Aligned_cols=17 Identities=47% Similarity=0.821 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhCCC
Q 032464 96 LDTVEIVMSLEEEFGIG 112 (140)
Q Consensus 96 Ld~vELv~~LEeeFgI~ 112 (140)
|.+.+|+..+|+.|||.
T Consensus 18 lel~eLvk~~eekfgVs 34 (124)
T COG0222 18 LELSELVKALEEKFGVT 34 (124)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 56788999999999997
No 58
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.57 E-value=3.1e+02 Score=22.55 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccC--CChHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHHHh
Q 032464 60 PETVQKVCEIVRRQLALPAETELTSESKFSALG--ADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVEK 137 (140)
Q Consensus 60 ~ei~~~V~~il~~~l~i~~~~eI~~ds~l~dLG--lDSLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~~ 137 (140)
+++.+++++-+++. +..+ .--..-.| -+|..+++.....-+++||+...-.+..-.|-+++.+.|.++-+.
T Consensus 10 ~~i~~~~~~~v~~l-g~~P------~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 10 EKRLELLKEEIIES-GLYP------RLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred HHHHHHHHHHHHHh-CCCC------eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45666666666553 4433 11111222 479999999999999999999888888888999999999887544
No 59
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=22.51 E-value=55 Score=19.27 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHhCCCC
Q 032464 59 KPETVQKVCEIVRRQLALPA 78 (140)
Q Consensus 59 ~~ei~~~V~~il~~~l~i~~ 78 (140)
...+...+++.|.+.+++++
T Consensus 18 ~~~tv~~lk~~i~~~~~~~~ 37 (64)
T smart00213 18 PSDTVSELKEKIAELTGIPV 37 (64)
T ss_pred CCCcHHHHHHHHHHHHCCCH
Confidence 34578888888988888765
No 60
>CHL00083 rpl12 ribosomal protein L12
Probab=21.34 E-value=90 Score=22.94 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHhCCCcC
Q 032464 95 SLDTVEIVMSLEEEFGIGVE 114 (140)
Q Consensus 95 SLd~vELv~~LEeeFgI~i~ 114 (140)
=+...||+..||++|||.-.
T Consensus 17 llE~~eLv~~le~~fgv~~~ 36 (131)
T CHL00083 17 LLEAAELVKQIEETFGVDAS 36 (131)
T ss_pred HHHHHHHHHHHHHHcCCCcc
Confidence 36778999999999999643
No 61
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=21.10 E-value=1.1e+02 Score=27.86 Aligned_cols=28 Identities=18% Similarity=0.476 Sum_probs=24.2
Q ss_pred ccccC--CChHHHHHHHHHHHHHhCCCcCc
Q 032464 88 FSALG--ADSLDTVEIVMSLEEEFGIGVEE 115 (140)
Q Consensus 88 l~dLG--lDSLd~vELv~~LEeeFgI~i~~ 115 (140)
+.|.| .|+-.++.|..+|-+.||+.|++
T Consensus 464 VLd~GqCnD~~r~~~la~aLae~lgvdI~d 493 (576)
T COG1151 464 VLDFGQCNDIYRIIVLALALAEVLGLDIND 493 (576)
T ss_pred cccccccchHHHHHHHHHHHHHHhCCCCcc
Confidence 34666 79999999999999999997776
No 62
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=20.94 E-value=2.4e+02 Score=18.62 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHhCCCcCccccccCCCHHHHHHHHHHHHH
Q 032464 95 SLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVE 136 (140)
Q Consensus 95 SLd~vELv~~LEeeFgI~i~~~~l~~~~TV~dl~~~I~~~~~ 136 (140)
|=..-+++..+=..||+++.+.++.-..+.+++...+...++
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~liq 85 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHRLIQ 85 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHHHHH
Confidence 677789999999999999999888767777888777776654
No 63
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=20.93 E-value=2.1e+02 Score=19.17 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhCCCcCccc-cccCCCHHHHHHHHHH
Q 032464 96 LDTVEIVMSLEEEFGIGVEEEN-SQNITTVQEAADLIEK 133 (140)
Q Consensus 96 Ld~vELv~~LEeeFgI~i~~~~-l~~~~TV~dl~~~I~~ 133 (140)
+..-+|..+|.++||-+.-.-- -.+-.|..+|++++.+
T Consensus 20 ~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~ 58 (78)
T PF10678_consen 20 YTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEE 58 (78)
T ss_pred cCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHH
Confidence 3445666666777776543321 0233466666666654
No 64
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=20.47 E-value=50 Score=20.21 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCC--------CCCCCCCCccccCCChH
Q 032464 57 SAKPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADSL 96 (140)
Q Consensus 57 m~~~ei~~~V~~il~~~l~i~~~--------~eI~~ds~l~dLGlDSL 96 (140)
+...+++..+++.|.+..+++++ ..+.++..|.++|+..-
T Consensus 12 v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~ 59 (69)
T PF00240_consen 12 VDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDG 59 (69)
T ss_dssp EETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTT
T ss_pred ECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCC
Confidence 44577888999999999998762 23667777888887643
Done!