Query 032467
Match_columns 140
No_of_seqs 219 out of 1749
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 23:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k2d_A Ring finger and CHY zin 99.8 2.3E-21 7.7E-26 125.5 2.0 77 55-131 1-77 (79)
2 2ecm_A Ring finger and CHY zin 99.6 2.3E-15 7.9E-20 89.7 4.1 52 10-62 2-53 (55)
3 2kiz_A E3 ubiquitin-protein li 99.5 2.8E-14 9.4E-19 88.9 4.6 53 9-63 10-62 (69)
4 1g25_A CDK-activating kinase a 99.5 2.5E-14 8.7E-19 88.3 4.2 51 13-63 3-54 (65)
5 2ep4_A Ring finger protein 24; 99.5 2.4E-14 8.1E-19 90.4 4.1 58 5-64 7-64 (74)
6 1iym_A EL5; ring-H2 finger, ub 99.5 3E-14 1E-18 84.9 3.8 50 11-62 3-53 (55)
7 2ct2_A Tripartite motif protei 99.5 5E-14 1.7E-18 91.3 4.9 54 10-63 12-67 (88)
8 3ng2_A RNF4, snurf, ring finge 99.5 2.9E-14 1E-18 89.0 3.5 53 10-63 7-62 (71)
9 2ea6_A Ring finger protein 4; 99.4 4E-14 1.4E-18 87.7 3.6 53 10-63 12-67 (69)
10 1t1h_A Gspef-atpub14, armadill 99.4 6.1E-14 2.1E-18 89.3 4.5 51 9-63 4-54 (78)
11 2ysl_A Tripartite motif-contai 99.4 1.3E-13 4.6E-18 86.5 5.6 51 9-63 16-68 (73)
12 1v87_A Deltex protein 2; ring- 99.4 7.2E-14 2.5E-18 95.0 4.7 55 10-64 22-94 (114)
13 1x4j_A Ring finger protein 38; 99.4 3.8E-14 1.3E-18 89.8 3.0 52 11-64 21-72 (75)
14 2xeu_A Ring finger protein 4; 99.4 6.9E-14 2.3E-18 85.4 3.9 51 12-63 2-55 (64)
15 2csy_A Zinc finger protein 183 99.4 8.4E-14 2.9E-18 89.4 4.4 49 10-63 12-60 (81)
16 2ect_A Ring finger protein 126 99.4 6.8E-14 2.3E-18 89.1 3.8 52 11-64 13-64 (78)
17 2d8t_A Dactylidin, ring finger 99.4 8.3E-14 2.8E-18 87.4 4.1 49 10-63 12-60 (71)
18 2l0b_A E3 ubiquitin-protein li 99.4 7.1E-14 2.4E-18 92.0 3.8 51 11-63 38-88 (91)
19 2yur_A Retinoblastoma-binding 99.4 8.3E-14 2.8E-18 88.2 3.8 50 11-64 13-64 (74)
20 2ecy_A TNF receptor-associated 99.4 7.3E-14 2.5E-18 86.4 3.4 49 11-63 13-61 (66)
21 2ecl_A Ring-box protein 2; RNF 99.4 1.4E-13 4.7E-18 88.9 4.8 51 12-63 14-75 (81)
22 1e4u_A Transcriptional repress 99.4 2.2E-14 7.4E-19 92.4 0.6 54 10-65 8-63 (78)
23 2djb_A Polycomb group ring fin 99.4 2.1E-13 7E-18 85.8 4.7 50 9-63 11-61 (72)
24 3hct_A TNF receptor-associated 99.4 4.4E-13 1.5E-17 92.0 6.6 89 11-116 16-107 (118)
25 4ayc_A E3 ubiquitin-protein li 99.4 1.7E-13 5.7E-18 96.6 4.1 47 13-64 53-99 (138)
26 3lrq_A E3 ubiquitin-protein li 99.4 2E-13 7E-18 91.2 3.8 49 12-64 21-70 (100)
27 3ztg_A E3 ubiquitin-protein li 99.4 3.4E-13 1.2E-17 88.4 4.3 49 10-62 10-60 (92)
28 2ysj_A Tripartite motif-contai 99.4 6.1E-13 2.1E-17 81.4 5.1 45 10-58 17-63 (63)
29 3fl2_A E3 ubiquitin-protein li 99.4 3E-13 1E-17 93.4 4.0 49 12-64 51-99 (124)
30 2egp_A Tripartite motif-contai 99.4 1.5E-13 5.1E-18 87.4 1.9 49 11-63 10-64 (79)
31 2ecw_A Tripartite motif-contai 99.3 9.7E-13 3.3E-17 84.3 4.9 49 11-63 17-70 (85)
32 1chc_A Equine herpes virus-1 r 99.3 5.1E-13 1.7E-17 82.8 3.4 50 11-64 3-52 (68)
33 3l11_A E3 ubiquitin-protein li 99.3 3.1E-13 1.1E-17 92.2 2.4 49 11-63 13-61 (115)
34 1rmd_A RAG1; V(D)J recombinati 99.3 7.5E-13 2.6E-17 90.4 4.1 49 12-64 22-70 (116)
35 2ecn_A Ring finger protein 141 99.3 2E-13 6.9E-18 85.2 0.9 49 10-64 12-60 (70)
36 4ap4_A E3 ubiquitin ligase RNF 99.3 9.8E-13 3.4E-17 90.7 3.9 52 11-63 5-59 (133)
37 2ecj_A Tripartite motif-contai 99.3 1.1E-12 3.8E-17 78.6 3.6 45 10-58 12-58 (58)
38 3dpl_R Ring-box protein 1; ubi 99.3 2E-12 6.8E-17 87.7 5.2 50 12-62 36-99 (106)
39 1z6u_A NP95-like ring finger p 99.3 6.4E-13 2.2E-17 95.1 2.8 49 12-64 77-125 (150)
40 2ecv_A Tripartite motif-contai 99.3 1.2E-12 4E-17 83.9 3.4 49 11-63 17-70 (85)
41 2ckl_A Polycomb group ring fin 99.3 2.2E-12 7.7E-17 87.0 4.6 49 11-64 13-62 (108)
42 2y43_A E3 ubiquitin-protein li 99.3 1.9E-12 6.6E-17 86.0 4.1 48 12-64 21-69 (99)
43 2ckl_B Ubiquitin ligase protei 99.2 3.8E-12 1.3E-16 91.9 4.0 48 12-63 53-101 (165)
44 1jm7_A BRCA1, breast cancer ty 99.2 3.3E-12 1.1E-16 86.2 2.9 48 12-63 20-69 (112)
45 3hcs_A TNF receptor-associated 99.2 8.5E-12 2.9E-16 90.3 4.6 50 11-64 16-65 (170)
46 2vje_A E3 ubiquitin-protein li 99.2 3.5E-12 1.2E-16 78.8 1.8 52 8-64 3-57 (64)
47 2kr4_A Ubiquitin conjugation f 99.2 1.2E-11 4E-16 80.5 4.3 49 11-64 12-60 (85)
48 1bor_A Transcription factor PM 99.2 2.7E-12 9.3E-17 77.2 1.1 47 9-63 2-48 (56)
49 3knv_A TNF receptor-associated 99.2 3.6E-12 1.2E-16 90.4 1.3 48 11-62 29-76 (141)
50 2kre_A Ubiquitin conjugation f 99.2 1.9E-11 6.6E-16 81.9 4.4 49 11-64 27-75 (100)
51 4ap4_A E3 ubiquitin ligase RNF 99.2 1.2E-11 4.2E-16 85.1 3.4 54 10-64 69-125 (133)
52 4ic3_A E3 ubiquitin-protein li 99.1 2.1E-11 7.2E-16 77.2 3.2 44 12-64 23-67 (74)
53 2d8s_A Cellular modulator of i 99.1 3.1E-11 1.1E-15 77.9 4.0 52 10-63 12-69 (80)
54 1jm7_B BARD1, BRCA1-associated 99.1 1E-11 3.5E-16 85.0 1.7 45 12-63 21-66 (117)
55 1wgm_A Ubiquitin conjugation f 99.1 4.4E-11 1.5E-15 79.9 4.8 49 11-64 20-69 (98)
56 2vje_B MDM4 protein; proto-onc 99.1 1.4E-11 4.7E-16 75.9 1.7 50 10-64 4-56 (63)
57 4a0k_B E3 ubiquitin-protein li 99.1 7.6E-12 2.6E-16 86.3 0.4 50 12-62 47-110 (117)
58 2c2l_A CHIP, carboxy terminus 99.1 3.8E-11 1.3E-15 92.0 4.3 53 8-64 203-255 (281)
59 2yu4_A E3 SUMO-protein ligase 99.1 9E-11 3.1E-15 77.6 4.1 46 12-61 6-59 (94)
60 2y1n_A E3 ubiquitin-protein li 99.0 1.8E-10 6.3E-15 93.6 4.7 48 13-64 332-379 (389)
61 2ecg_A Baculoviral IAP repeat- 99.0 9E-11 3.1E-15 74.3 1.2 43 13-64 25-68 (75)
62 2f42_A STIP1 homology and U-bo 99.0 5.2E-10 1.8E-14 82.3 4.5 50 11-64 104-153 (179)
63 2yho_A E3 ubiquitin-protein li 98.9 4.2E-10 1.4E-14 72.2 2.7 44 12-64 17-61 (79)
64 2ea5_A Cell growth regulator w 98.9 3.2E-10 1.1E-14 70.8 2.0 46 10-64 12-58 (68)
65 1wim_A KIAA0161 protein; ring 98.9 1.6E-09 5.5E-14 71.2 4.6 49 11-61 3-61 (94)
66 2ct0_A Non-SMC element 1 homol 98.8 3E-09 1E-13 67.6 4.1 47 13-62 15-62 (74)
67 3htk_C E3 SUMO-protein ligase 98.7 4.3E-09 1.5E-13 81.4 3.3 49 11-63 179-231 (267)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.7 1.3E-08 4.5E-13 62.0 3.1 50 9-62 2-57 (60)
69 3t6p_A Baculoviral IAP repeat- 98.6 7.9E-09 2.7E-13 82.9 2.4 43 13-64 295-338 (345)
70 2bay_A PRE-mRNA splicing facto 98.5 4.3E-08 1.5E-12 59.8 3.1 47 12-63 2-49 (61)
71 3k1l_B Fancl; UBC, ring, RWD, 98.5 2.6E-08 8.9E-13 79.8 1.1 54 10-63 305-372 (381)
72 3vk6_A E3 ubiquitin-protein li 98.3 2.7E-07 9.2E-12 61.4 3.1 50 15-67 3-52 (101)
73 3nw0_A Non-structural maintena 97.2 0.00019 6.5E-09 54.6 2.8 47 13-62 180-227 (238)
74 2ko5_A Ring finger protein Z; 96.5 0.00086 2.9E-08 43.9 1.6 44 13-63 28-72 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 96.5 0.0011 3.8E-08 43.3 2.0 33 12-47 2-36 (101)
76 2ysm_A Myeloid/lymphoid or mix 92.9 0.18 6E-06 33.4 4.8 47 11-59 5-55 (111)
77 2lri_C Autoimmune regulator; Z 92.5 0.11 3.7E-06 31.6 3.2 45 12-61 11-59 (66)
78 1weo_A Cellulose synthase, cat 92.4 0.28 9.5E-06 31.7 5.0 58 6-63 9-69 (93)
79 2lbm_A Transcriptional regulat 91.6 0.53 1.8E-05 32.9 6.2 48 9-61 59-117 (142)
80 1f62_A Transcription factor WS 89.3 0.4 1.4E-05 27.1 3.3 44 15-61 2-50 (51)
81 3v43_A Histone acetyltransfera 88.1 1.1 3.8E-05 29.6 5.4 48 12-59 4-62 (112)
82 2l5u_A Chromodomain-helicase-D 87.4 0.29 1E-05 29.0 1.9 47 9-61 7-58 (61)
83 1mm2_A MI2-beta; PHD, zinc fin 85.3 0.25 8.6E-06 29.3 0.8 49 10-62 6-57 (61)
84 3ql9_A Transcriptional regulat 85.0 0.86 3E-05 31.3 3.5 50 8-61 52-111 (129)
85 3m62_A Ubiquitin conjugation f 84.6 1.1 3.7E-05 40.2 4.8 51 9-64 887-938 (968)
86 1we9_A PHD finger family prote 82.9 0.18 6.2E-06 30.0 -0.6 50 10-61 3-58 (64)
87 3asl_A E3 ubiquitin-protein li 82.1 0.67 2.3E-05 28.2 1.8 44 15-61 20-69 (70)
88 2k16_A Transcription initiatio 81.8 1.2 4E-05 27.1 2.9 46 13-61 18-68 (75)
89 3shb_A E3 ubiquitin-protein li 81.5 0.51 1.8E-05 29.4 1.2 43 15-60 28-76 (77)
90 3u5n_A E3 ubiquitin-protein li 81.5 0.37 1.3E-05 35.3 0.6 46 10-61 4-54 (207)
91 2e6s_A E3 ubiquitin-protein li 80.9 0.92 3.1E-05 28.2 2.2 45 13-60 26-76 (77)
92 2kdx_A HYPA, hydrogenase/ureas 80.9 0.85 2.9E-05 30.4 2.2 38 87-126 69-107 (119)
93 1wil_A KIAA1045 protein; ring 80.8 1.5 5.1E-05 28.0 3.1 45 11-60 13-75 (89)
94 3t7l_A Zinc finger FYVE domain 80.0 0.98 3.3E-05 28.8 2.1 40 9-48 16-55 (90)
95 1z2q_A LM5-1; membrane protein 79.8 1 3.4E-05 28.3 2.1 39 8-47 16-55 (84)
96 3o36_A Transcription intermedi 79.7 0.62 2.1E-05 33.3 1.2 45 12-61 3-51 (184)
97 1fp0_A KAP-1 corepressor; PHD 78.6 0.86 2.9E-05 29.2 1.5 47 10-61 22-72 (88)
98 2cs3_A Protein C14ORF4, MY039 78.3 1.7 5.8E-05 27.6 2.8 39 10-50 12-52 (93)
99 2yw8_A RUN and FYVE domain-con 78.0 1.1 3.9E-05 27.9 1.9 39 8-47 14-53 (82)
100 3a43_A HYPD, hydrogenase nicke 77.8 0.89 3E-05 31.4 1.5 39 87-125 66-123 (139)
101 1x4u_A Zinc finger, FYVE domai 77.6 1.2 4E-05 27.9 2.0 38 8-46 9-47 (84)
102 1joc_A EEA1, early endosomal a 76.9 1.3 4.5E-05 30.0 2.1 39 8-47 64-103 (125)
103 3v43_A Histone acetyltransfera 76.6 0.95 3.3E-05 29.9 1.4 44 15-60 63-111 (112)
104 4gne_A Histone-lysine N-methyl 76.6 2.8 9.6E-05 27.7 3.7 42 11-59 13-60 (107)
105 2l43_A N-teminal domain from h 76.5 1.2 4.1E-05 28.3 1.7 49 11-61 23-75 (88)
106 2yql_A PHD finger protein 21A; 76.0 0.24 8.3E-06 28.7 -1.6 46 11-60 7-55 (56)
107 2d8v_A Zinc finger FYVE domain 75.7 1.4 4.8E-05 26.7 1.8 35 9-48 4-39 (67)
108 2ct7_A Ring finger protein 31; 75.4 0.57 1.9E-05 29.5 -0.0 33 15-47 27-61 (86)
109 2yt5_A Metal-response element- 74.3 0.58 2E-05 27.8 -0.2 50 11-61 4-61 (66)
110 2ku3_A Bromodomain-containing 74.0 1.5 5.3E-05 26.7 1.7 50 10-60 13-65 (71)
111 2kwj_A Zinc finger protein DPF 73.9 0.96 3.3E-05 30.0 0.8 46 14-59 2-59 (114)
112 3lqh_A Histone-lysine N-methyl 73.0 1.2 4.1E-05 32.2 1.2 50 14-63 3-65 (183)
113 1xwh_A Autoimmune regulator; P 72.3 0.57 2E-05 28.1 -0.6 47 10-61 5-55 (66)
114 2lv9_A Histone-lysine N-methyl 72.0 6.1 0.00021 25.4 4.4 45 14-62 29-77 (98)
115 3a1b_A DNA (cytosine-5)-methyl 71.5 5.6 0.00019 28.1 4.4 50 7-61 73-134 (159)
116 2puy_A PHD finger protein 21A; 71.5 0.66 2.3E-05 27.2 -0.4 47 11-61 3-52 (60)
117 2ro1_A Transcription intermedi 70.5 1.2 4.2E-05 32.1 0.8 45 13-61 2-49 (189)
118 4fo9_A E3 SUMO-protein ligase 70.0 4.4 0.00015 32.3 4.0 48 13-63 215-265 (360)
119 3i2d_A E3 SUMO-protein ligase 70.0 4.2 0.00014 32.6 3.8 49 12-63 248-299 (371)
120 2jrp_A Putative cytoplasmic pr 69.0 0.66 2.3E-05 29.3 -0.8 41 12-62 1-41 (81)
121 2e6r_A Jumonji/ARID domain-con 67.0 0.81 2.8E-05 29.4 -0.8 45 13-60 16-65 (92)
122 1vfy_A Phosphatidylinositol-3- 66.6 3.1 0.00011 25.2 2.0 34 14-47 12-45 (73)
123 2jne_A Hypothetical protein YF 66.1 0.85 2.9E-05 29.9 -0.8 41 12-62 31-71 (101)
124 1wep_A PHF8; structural genomi 65.4 5.7 0.00019 24.3 3.0 48 12-62 11-64 (79)
125 2jmo_A Parkin; IBR, E3 ligase, 64.3 0.69 2.4E-05 28.8 -1.5 16 34-49 55-70 (80)
126 1wen_A Inhibitor of growth fam 63.9 5.3 0.00018 24.2 2.6 46 12-62 15-66 (71)
127 1y02_A CARP2, FYVE-ring finger 63.8 2.8 9.7E-05 28.2 1.5 49 9-58 15-63 (120)
128 3mjh_B Early endosome antigen 62.5 3.6 0.00012 21.5 1.4 16 52-67 5-20 (34)
129 1weu_A Inhibitor of growth fam 61.8 3.5 0.00012 26.4 1.6 45 12-62 35-86 (91)
130 1wev_A Riken cDNA 1110020M19; 61.6 0.82 2.8E-05 29.1 -1.5 48 12-61 15-72 (88)
131 1wfk_A Zinc finger, FYVE domai 60.4 3.7 0.00013 25.9 1.5 34 13-47 9-43 (88)
132 2kgg_A Histone demethylase jar 60.0 2.4 8.3E-05 24.0 0.5 43 15-59 4-52 (52)
133 3ask_A E3 ubiquitin-protein li 59.6 3 0.0001 31.2 1.1 44 15-61 176-225 (226)
134 2jvx_A NF-kappa-B essential mo 59.6 2.5 8.5E-05 21.2 0.4 16 52-67 3-18 (28)
135 1zbd_B Rabphilin-3A; G protein 59.1 3.1 0.00011 28.5 1.0 50 12-61 54-107 (134)
136 2o35_A Hypothetical protein DU 58.3 3.7 0.00013 26.9 1.2 13 38-50 42-54 (105)
137 3fyb_A Protein of unknown func 57.5 4 0.00014 26.7 1.3 12 38-49 41-52 (104)
138 2pv0_B DNA (cytosine-5)-methyl 55.3 13 0.00046 29.8 4.3 52 5-61 85-148 (386)
139 2xb1_A Pygopus homolog 2, B-ce 54.1 1 3.4E-05 29.6 -2.1 49 13-62 3-62 (105)
140 3j20_Y 30S ribosomal protein S 52.0 6.6 0.00023 22.2 1.5 27 90-116 18-44 (50)
141 1x4v_A Hypothetical protein LO 51.3 13 0.00046 22.0 2.8 28 91-123 12-42 (63)
142 2g45_A Ubiquitin carboxyl-term 51.1 10 0.00034 25.8 2.5 25 92-119 35-61 (129)
143 3zyq_A Hepatocyte growth facto 49.2 6.6 0.00022 29.0 1.5 35 13-47 164-198 (226)
144 1vq8_1 50S ribosomal protein L 49.1 8.5 0.00029 22.5 1.6 27 87-116 13-39 (57)
145 1dvp_A HRS, hepatocyte growth 48.3 6.7 0.00023 28.6 1.4 34 13-47 161-195 (220)
146 2gmg_A Hypothetical protein PF 48.2 10 0.00035 24.9 2.1 33 89-122 65-97 (105)
147 2ri7_A Nucleosome-remodeling f 47.9 3 0.0001 29.3 -0.6 49 10-61 5-59 (174)
148 3mpx_A FYVE, rhogef and PH dom 47.4 3.9 0.00013 32.5 0.0 36 12-47 374-409 (434)
149 3o70_A PHD finger protein 13; 44.5 4.7 0.00016 24.2 -0.0 46 11-60 17-66 (68)
150 3iz5_l 60S ribosomal protein L 42.3 15 0.00052 23.5 2.2 27 87-116 12-38 (94)
151 3v2d_5 50S ribosomal protein L 42.1 8.9 0.0003 22.6 1.0 29 90-123 29-57 (60)
152 3h0g_L DNA-directed RNA polyme 42.1 15 0.00051 21.9 2.0 28 89-117 19-46 (63)
153 2zet_C Melanophilin; complex, 40.6 19 0.00066 25.0 2.7 49 12-61 67-117 (153)
154 4a18_A RPL37, ribosomal protei 40.3 16 0.00054 23.5 2.0 26 88-116 13-38 (94)
155 1zfo_A LAsp-1; LIM domain, zin 40.3 9.8 0.00033 19.0 0.9 29 13-44 3-31 (31)
156 2vpb_A Hpygo1, pygopus homolog 40.1 17 0.00056 21.5 2.0 34 11-45 6-41 (65)
157 1twf_L ABC10-alpha, DNA-direct 39.5 14 0.00047 22.4 1.6 28 89-117 26-53 (70)
158 3ihp_A Ubiquitin carboxyl-term 38.0 16 0.00056 32.1 2.4 68 32-119 173-242 (854)
159 3uk3_C Zinc finger protein 217 37.2 41 0.0014 17.6 3.4 15 52-66 4-18 (57)
160 2k5c_A Uncharacterized protein 36.5 21 0.00072 22.5 2.1 10 53-62 9-18 (95)
161 2zkr_2 60S ribosomal protein L 36.3 23 0.00077 22.9 2.3 27 87-116 12-38 (97)
162 2zjr_Z 50S ribosomal protein L 36.0 23 0.00077 20.7 2.1 29 90-123 29-57 (60)
163 2pk7_A Uncharacterized protein 35.8 14 0.00049 22.2 1.3 11 52-62 8-18 (69)
164 3j21_e 50S ribosomal protein L 33.7 19 0.00066 21.3 1.5 24 90-116 16-39 (62)
165 3c5k_A HD6, histone deacetylas 33.5 21 0.00073 23.3 1.9 30 91-123 24-55 (109)
166 1wem_A Death associated transc 32.8 13 0.00045 22.4 0.7 45 13-61 16-70 (76)
167 1bbo_A Human enhancer-binding 31.4 43 0.0015 17.5 2.8 12 53-64 2-13 (57)
168 2k4x_A 30S ribosomal protein S 30.0 27 0.00091 20.0 1.7 26 91-116 18-43 (55)
169 1pft_A TFIIB, PFTFIIBN; N-term 29.9 37 0.0013 18.5 2.3 14 110-123 25-39 (50)
170 2i50_A Ubiquitin carboxyl-term 29.7 16 0.00055 24.5 0.8 30 32-61 4-37 (126)
171 1wd2_A Ariadne-1 protein homol 29.6 20 0.00068 20.8 1.1 16 47-62 1-16 (60)
172 2fiy_A Protein FDHE homolog; F 29.5 22 0.00074 27.6 1.6 27 88-118 205-231 (309)
173 2kpi_A Uncharacterized protein 29.5 26 0.00088 20.1 1.6 11 14-24 11-21 (56)
174 1wee_A PHD finger family prote 27.9 5.6 0.00019 23.9 -1.6 46 12-60 15-65 (72)
175 2dar_A PDZ and LIM domain prot 27.3 58 0.002 19.7 3.1 40 11-63 23-62 (90)
176 2vnf_A ING 4, P29ING4, inhibit 27.2 5.7 0.00019 23.1 -1.6 42 13-60 10-58 (60)
177 1x68_A FHL5 protein; four-and- 27.2 48 0.0016 19.3 2.6 61 13-100 5-65 (76)
178 2e5r_A Dystrobrevin alpha; ZZ 27.2 25 0.00087 20.5 1.3 28 92-122 12-39 (63)
179 1wfl_A Zinc finger protein 216 26.6 32 0.0011 21.1 1.7 29 91-124 25-54 (74)
180 1wyh_A SLIM 2, skeletal muscle 26.6 73 0.0025 18.0 3.4 40 13-63 5-44 (72)
181 2lce_A B-cell lymphoma 6 prote 26.1 62 0.0021 18.1 3.0 15 52-66 17-31 (74)
182 1x4l_A Skeletal muscle LIM-pro 25.9 66 0.0023 18.3 3.1 41 13-62 5-45 (72)
183 1wfh_A Zinc finger (AN1-like) 25.7 41 0.0014 20.0 2.0 31 90-125 14-45 (64)
184 1wg2_A Zinc finger (AN1-like) 25.6 39 0.0013 20.1 1.9 30 90-124 14-44 (64)
185 1x63_A Skeletal muscle LIM-pro 25.4 98 0.0033 18.0 3.9 40 13-63 15-54 (82)
186 3c6w_A P28ING5, inhibitor of g 25.3 6.8 0.00023 22.8 -1.5 44 12-60 8-57 (59)
187 1g47_A Pinch protein; LIM doma 25.2 54 0.0018 18.9 2.6 42 11-63 9-50 (77)
188 1x4k_A Skeletal muscle LIM-pro 25.1 50 0.0017 18.8 2.4 40 13-63 5-44 (72)
189 4ayb_P DNA-directed RNA polyme 25.1 11 0.00036 21.3 -0.6 27 33-62 7-33 (48)
190 1znf_A 31ST zinc finger from X 24.7 49 0.0017 13.9 1.9 12 53-64 2-13 (27)
191 2e72_A POGO transposable eleme 24.7 38 0.0013 19.0 1.6 14 51-64 11-24 (49)
192 2adr_A ADR1; transcription reg 24.3 55 0.0019 17.3 2.4 12 53-64 3-14 (60)
193 4gzn_C ZFP-57, zinc finger pro 24.1 59 0.002 18.3 2.5 13 53-65 5-17 (60)
194 1z60_A TFIIH basal transcripti 23.9 57 0.002 18.9 2.4 42 15-58 17-58 (59)
195 2lcq_A Putative toxin VAPC6; P 23.6 31 0.0011 23.7 1.4 27 90-118 131-157 (165)
196 4gut_A Lysine-specific histone 23.6 1.7E+02 0.0058 25.3 6.3 90 4-101 4-105 (776)
197 2fc7_A ZZZ3 protein; structure 23.4 38 0.0013 20.9 1.7 25 90-117 20-44 (82)
198 1x64_A Alpha-actinin-2 associa 23.3 70 0.0024 19.2 2.9 39 12-63 24-62 (89)
199 2dip_A Zinc finger SWIM domain 23.1 35 0.0012 21.9 1.5 27 90-119 30-56 (98)
200 2rsd_A E3 SUMO-protein ligase 22.2 9.2 0.00031 22.7 -1.4 45 13-60 10-64 (68)
201 3o7a_A PHD finger protein 13 v 22.1 6.9 0.00024 21.9 -1.9 27 34-60 23-51 (52)
202 1ard_A Yeast transcription fac 22.0 56 0.0019 13.9 1.8 13 53-65 3-15 (29)
203 1x61_A Thyroid receptor intera 21.6 80 0.0027 17.9 2.9 39 13-62 5-43 (72)
204 1vd4_A Transcription initiatio 21.3 51 0.0018 18.1 1.9 13 52-64 14-26 (62)
205 1p7a_A BF3, BKLF, kruppel-like 21.1 60 0.002 15.1 1.9 13 52-64 11-23 (37)
206 1x6e_A Zinc finger protein 24; 21.0 48 0.0016 18.5 1.7 13 52-64 14-26 (72)
207 2m0e_A Zinc finger and BTB dom 20.9 63 0.0022 13.6 2.0 13 53-65 3-15 (29)
208 1wew_A DNA-binding family prot 20.6 8.7 0.0003 23.4 -1.8 46 12-61 15-72 (78)
209 1klr_A Zinc finger Y-chromosom 20.5 64 0.0022 13.7 1.9 14 53-66 3-16 (30)
No 1
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-21 Score=125.47 Aligned_cols=77 Identities=45% Similarity=0.795 Sum_probs=41.9
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhcCCCChhhhcccceecCCCCCCCcccceeeeccccccCCCcccccccCCCCCCC
Q 032467 55 CPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQTRGDTATTC 131 (140)
Q Consensus 55 CP~CR~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~C~~C~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~ 131 (140)
||+|.+++.+|+..|+.|+.+++.++||++|++.+++|+|+||++++.+.+|+++++|+.|+|||++.+.|..+|+.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~~~~~~ 77 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGRRISLD 77 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCCCCCCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998766654
No 2
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.56 E-value=2.3e-15 Score=89.75 Aligned_cols=52 Identities=40% Similarity=0.793 Sum_probs=44.7
Q ss_pred cCcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCC
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~ 62 (140)
++.+..|+||++.+.+....++.++|||.||..||.+|+... ..||+||+.+
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CSCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 356789999999876655678889999999999999999854 8899999886
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=2.8e-14 Score=88.92 Aligned_cols=53 Identities=25% Similarity=0.614 Sum_probs=43.5
Q ss_pred ccCcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
+...+..|+||++.|.. ...++.++|||.||..||.+|+.. +.+||+||..+.
T Consensus 10 ~~~~~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEE-GEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCS-SSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccccC-CCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCcccc
Confidence 44567899999997643 456788999999999999999984 568999999874
No 4
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.48 E-value=2.5e-14 Score=88.26 Aligned_cols=51 Identities=25% Similarity=0.509 Sum_probs=41.8
Q ss_pred ccccccccc-cccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 13 HHNCPICFE-FIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 13 ~~~C~IC~e-~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
+..|+||++ .+.+.....+.++|||+||..||.+|+..+...||+||+.+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 578999999 655444444678999999999999998766678999999974
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.4e-14 Score=90.38 Aligned_cols=58 Identities=24% Similarity=0.605 Sum_probs=46.2
Q ss_pred ccccccCcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 5 HRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 5 h~c~e~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
..-.+...+..|+||++.+.. ....+.++|||.||..||.+|+.. +..||+||+.+..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~-~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 7 GKVKELNLHELCAVCLEDFKP-RDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp SCCCCCCCSCBCSSSCCBCCS-SSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred cccccCCCCCCCcCCCcccCC-CCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 344556678899999998643 345567799999999999999984 4689999999754
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.47 E-value=3e-14 Score=84.91 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=41.1
Q ss_pred CcccccccccccccccCCccEEec-CCCcccHHHHHhhhccccCCCCCCCCCC
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLR-CGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~-CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~ 62 (140)
..+.+|+||++.+.+ ...++.++ |||.||..||.+|+. .+.+||+||+.+
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCS
T ss_pred CCCCcCccCCccccC-CCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEe
Confidence 346789999998654 34467776 999999999999998 467899999886
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5e-14 Score=91.32 Aligned_cols=54 Identities=33% Similarity=0.645 Sum_probs=44.3
Q ss_pred cCcccccccccccccccCCccEEecCCCcccHHHHHhhhccc--cCCCCCCCCCCc
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSLW 63 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~--~~~CP~CR~~~~ 63 (140)
...+..|+||++.+.+....++.++|||+||..||.+|+... ...||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 345689999999876544458899999999999999999853 478999999863
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.46 E-value=2.9e-14 Score=89.02 Aligned_cols=53 Identities=30% Similarity=0.647 Sum_probs=42.9
Q ss_pred cCccccccccccccccc---CCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 10 RAMHHNCPICFEFIFDT---MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~---~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
...+..|+||++.+.+. ...++.++|||+||..||.+|+.. +..||+||..+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccC
Confidence 45678999999986442 233488899999999999999984 578999999874
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4e-14 Score=87.72 Aligned_cols=53 Identities=30% Similarity=0.647 Sum_probs=42.6
Q ss_pred cCccccccccccccccc---CCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 10 RAMHHNCPICFEFIFDT---MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~---~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
...+..|+||++.+.+. ...++.++|||.||..||.+|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 34578999999986542 233478899999999999999984 678999999873
No 10
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.45 E-value=6.1e-14 Score=89.34 Aligned_cols=51 Identities=27% Similarity=0.468 Sum_probs=43.8
Q ss_pred ccCcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
+...+..|+||++. +.+|++++|||+||..||.+|+..+...||+||..+.
T Consensus 4 ~~~~~~~C~IC~~~----~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 4 EFPEYFRCPISLEL----MKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CCSSSSSCTTTSCC----CSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCcccCCCCCcccc----ccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34568899999986 4568889999999999999999865789999999874
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=86.48 Aligned_cols=51 Identities=25% Similarity=0.775 Sum_probs=42.2
Q ss_pred ccCcccccccccccccccCCccEEecCCCcccHHHHHhhhcc--ccCCCCCCCCCCc
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH--YRYTCPVCSKSLW 63 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~--~~~~CP~CR~~~~ 63 (140)
+...+..|+||++. +.+++.++|||+||..||.+|+.. ....||+||..+.
T Consensus 16 ~~~~~~~C~IC~~~----~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDI----LQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSB----CSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred hCccCCEeccCCcc----cCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34557899999986 456788999999999999999963 4568999999873
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.44 E-value=7.2e-14 Score=95.03 Aligned_cols=55 Identities=27% Similarity=0.489 Sum_probs=41.9
Q ss_pred cCcccccccccccccccC--------------CccEEecCCCcccHHHHHhhhcc----ccCCCCCCCCCCch
Q 032467 10 RAMHHNCPICFEFIFDTM--------------KDITVLRCGHTIHLECLKEMEKH----YRYTCPVCSKSLWD 64 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~--------------~~~~~l~CgH~Fc~~Cl~~~~~~----~~~~CP~CR~~~~~ 64 (140)
...+..|+||++.|.... ...+.++|||.||..||.+|+.. ....||+||+.+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 445679999999874321 23347899999999999999952 35789999998743
No 13
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.8e-14 Score=89.83 Aligned_cols=52 Identities=25% Similarity=0.540 Sum_probs=42.5
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
..+..|+||++.+.. ...++.++|||.||..||.+|+.. +..||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFES-RQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCB-TCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCC-CCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 456789999998643 345678899999999999999984 5789999998743
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.43 E-value=6.9e-14 Score=85.43 Aligned_cols=51 Identities=31% Similarity=0.683 Sum_probs=41.8
Q ss_pred ccccccccccccccc---CCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 12 MHHNCPICFEFIFDT---MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~---~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
.+..|+||++.+.+. ...++.++|||.||..|+.+|+.. +..||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCC
Confidence 467899999986542 234578899999999999999984 678999999874
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=8.4e-14 Score=89.44 Aligned_cols=49 Identities=20% Similarity=0.434 Sum_probs=41.5
Q ss_pred cCcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
...+..|+||++.+ ..+++++|||+||..||.+|+. ....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF----QNPVVTKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC----CSEEECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchh----cCeeEccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 34567899999863 5578899999999999999997 4678999999975
No 16
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=6.8e-14 Score=89.10 Aligned_cols=52 Identities=31% Similarity=0.569 Sum_probs=42.5
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
..+..|+||++.|.. ....+.++|||.||..||.+|+. ....||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYAL-GESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCT-TSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccC-CCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCC
Confidence 446899999998643 34557789999999999999997 45789999999743
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=8.3e-14 Score=87.41 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=41.5
Q ss_pred cCcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
...+..|+||++. +..++.++|||+||..||.+|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~----~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQT----CVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSB----CSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCC
T ss_pred CCCCCCCccCCcc----cCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhC
Confidence 3457899999986 456788999999999999999974 578999999974
No 18
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.43 E-value=7.1e-14 Score=91.99 Aligned_cols=51 Identities=29% Similarity=0.482 Sum_probs=42.2
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
..+..|+||++.+.. ...++.++|||.||..||.+|+. .+..||+||+.+.
T Consensus 38 ~~~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVK-GDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCT-TCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcC-CCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCC
Confidence 456789999987643 34577899999999999999998 4578999999873
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.42 E-value=8.3e-14 Score=88.23 Aligned_cols=50 Identities=28% Similarity=0.581 Sum_probs=41.3
Q ss_pred CcccccccccccccccCCccEEec-CCCcccHHHHHhhhccc-cCCCCCCCCCCch
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLR-CGHTIHLECLKEMEKHY-RYTCPVCSKSLWD 64 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~-CgH~Fc~~Cl~~~~~~~-~~~CP~CR~~~~~ 64 (140)
..+..|+||++. +.+|+.++ |||+||..||.+|+... ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~----~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDI----MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCC----CTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChH----HhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 457899999986 45678899 99999999999999743 3689999998643
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=7.3e-14 Score=86.42 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=41.1
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
..+..|+||++.+ ..++.++|||+||..||.+|+......||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVL----CSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEE----SSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHh----cCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 4478999999864 456668999999999999999656678999999874
No 21
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=88.86 Aligned_cols=51 Identities=25% Similarity=0.599 Sum_probs=38.5
Q ss_pred cccccccccccccc----------cCCccEEe-cCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 12 MHHNCPICFEFIFD----------TMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 12 ~~~~C~IC~e~l~~----------~~~~~~~l-~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
.+..|+||++.|.+ ....++.+ +|||.||..||.+|+.. +.+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence 45678888887643 22334444 69999999999999984 578999999863
No 22
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.41 E-value=2.2e-14 Score=92.41 Aligned_cols=54 Identities=26% Similarity=0.577 Sum_probs=42.1
Q ss_pred cCcccccccccccccccCCccEEec--CCCcccHHHHHhhhccccCCCCCCCCCCchh
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLR--CGHTIHLECLKEMEKHYRYTCPVCSKSLWDM 65 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~--CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~~ 65 (140)
...+..||||++.+. ..+++.++ |||.||..|+.+++......||+||+.+...
T Consensus 8 ~~~~~~CpICle~~~--~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLE--IDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCC--TTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCc--cccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 345789999999753 23344444 9999999999999866678999999998653
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=85.80 Aligned_cols=50 Identities=26% Similarity=0.492 Sum_probs=41.2
Q ss_pred ccCcccccccccccccccCCccEEe-cCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~l-~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
+...+..|+||++.+ .+++.+ +|||+||..||.+|+.. ...||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 61 (72)
T 2djb_A 11 ELTPYILCSICKGYL----IDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVH 61 (72)
T ss_dssp CCCGGGSCTTTSSCC----SSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred hcCCCCCCCCCChHH----HCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccC
Confidence 345578999999864 446776 99999999999999974 578999999974
No 24
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.40 E-value=4.4e-13 Score=92.02 Aligned_cols=89 Identities=19% Similarity=0.449 Sum_probs=60.1
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCchhhhH-HHHHHHHHhcCCCChhhhccc
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKL-WSKIDQEIASTPMPAMYQNKM 89 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 89 (140)
..+..|+||++. +..|+.++|||+||..||.+|+......||+||..+...... ...+...+. .
T Consensus 16 ~~~~~C~IC~~~----~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~-----------~ 80 (118)
T 3hct_A 16 ESKYECPICLMA----LREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL-----------S 80 (118)
T ss_dssp CGGGBCTTTCSB----CSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHH-----------T
T ss_pred CCCCCCCcCChh----hcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHc-----------c
Confidence 446899999986 456788999999999999999986556899999998542111 112222222 2
Q ss_pred ceecC--CCCCCCcccceeeeccccccCC
Q 032467 90 VWILC--NDCGANSHVQFHVIAHKCLSCK 116 (140)
Q Consensus 90 ~~i~C--~~C~~~~~~~~~~~~~~C~~C~ 116 (140)
..+.| .+|++.. .+..+..+-.+|.
T Consensus 81 l~v~C~n~gC~~~~--~~~~l~~H~~~c~ 107 (118)
T 3hct_A 81 LMVKCPNEGCLHKM--ELRHLEDHQAHCE 107 (118)
T ss_dssp SEEECSSTTCCCEE--EGGGSGGGTSSSC
T ss_pred ceeECCCCCCCCEE--eeHHHHHHHHHch
Confidence 46778 5888763 3334555555554
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.39 E-value=1.7e-13 Score=96.58 Aligned_cols=47 Identities=30% Similarity=0.749 Sum_probs=40.5
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
+..|+||++. +.+|++++|||+||..||..|+. ....||+||+.+..
T Consensus 53 ~~~C~iC~~~----~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEY----FIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSB----CSSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC
T ss_pred cCCCcccCcc----cCCceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC
Confidence 5689999986 45688999999999999999998 45789999999853
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.38 E-value=2e-13 Score=91.24 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=41.6
Q ss_pred cccccccccccccccCCccEE-ecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 12 MHHNCPICFEFIFDTMKDITV-LRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~-l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
.+..|+||++. +..|+. ++|||+||..||.+|+......||+||..+..
T Consensus 21 ~~~~C~IC~~~----~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEK----LRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSB----CSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCcc----ccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 36789999986 356788 89999999999999998655789999999743
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.37 E-value=3.4e-13 Score=88.39 Aligned_cols=49 Identities=29% Similarity=0.585 Sum_probs=41.2
Q ss_pred cCcccccccccccccccCCccEEec-CCCcccHHHHHhhhcc-ccCCCCCCCCCC
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLR-CGHTIHLECLKEMEKH-YRYTCPVCSKSL 62 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~-CgH~Fc~~Cl~~~~~~-~~~~CP~CR~~~ 62 (140)
...++.|+||++. +.+|++++ |||+||..||.+|+.. +...||+||..+
T Consensus 10 ~~~~~~C~IC~~~----~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDI----MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEE----CSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChh----hcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3457899999985 45688999 9999999999999864 347899999996
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.1e-13 Score=81.39 Aligned_cols=45 Identities=27% Similarity=0.850 Sum_probs=37.6
Q ss_pred cCcccccccccccccccCCccEEecCCCcccHHHHHhhhcc--ccCCCCCC
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH--YRYTCPVC 58 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~--~~~~CP~C 58 (140)
...+..|+||++. +.+|+.++|||+||..||.+|+.. ....||+|
T Consensus 17 ~~~~~~C~IC~~~----~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDI----LQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSB----CSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCch----hCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3457899999986 456888999999999999999974 45689998
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.37 E-value=3e-13 Score=93.44 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=41.9
Q ss_pred cccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
.+..|+||++. +.+|++++|||+||..||..|+......||+||..+..
T Consensus 51 ~~~~C~IC~~~----~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQEL----VFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSB----CSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChH----HcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 35789999986 45788999999999999999998556689999999854
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-13 Score=87.45 Aligned_cols=49 Identities=33% Similarity=0.783 Sum_probs=41.0
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccc------cCCCCCCCCCCc
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY------RYTCPVCSKSLW 63 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~------~~~CP~CR~~~~ 63 (140)
..+..|+||++.+ .+++.++|||+||..||.+|+... ...||+||..+.
T Consensus 10 ~~~~~C~IC~~~~----~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 10 QEEVTCPICLELL----TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCEETTTTEEC----SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred ccCCCCcCCCccc----CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 4578999999863 456779999999999999998752 578999999974
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=9.7e-13 Score=84.33 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=41.2
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccc-----cCCCCCCCCCCc
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY-----RYTCPVCSKSLW 63 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~-----~~~CP~CR~~~~ 63 (140)
..+..|+||++. +..++.++|||+||..||.+|+... ...||+||..+.
T Consensus 17 ~~~~~C~IC~~~----~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLEL----LKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSC----CSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChh----hCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 347899999986 4567789999999999999998752 678999999974
No 32
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.34 E-value=5.1e-13 Score=82.80 Aligned_cols=50 Identities=26% Similarity=0.559 Sum_probs=40.7
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
..+..|+||++.+. .+++.++|||.||..|+.+|+. .+..||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHh
Confidence 34678999998642 3347889999999999999997 45789999999743
No 33
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.33 E-value=3.1e-13 Score=92.17 Aligned_cols=49 Identities=24% Similarity=0.650 Sum_probs=42.3
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
..+..|+||++. +..|+.++|||+||..||.+|+..+...||+||..+.
T Consensus 13 ~~~~~C~iC~~~----~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEI----LVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSB----CSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcc----cCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 346889999986 4568889999999999999999866789999999975
No 34
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.33 E-value=7.5e-13 Score=90.35 Aligned_cols=49 Identities=22% Similarity=0.454 Sum_probs=41.9
Q ss_pred cccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
.+..|+||++. +.+|+.++|||+||..||.+|+......||+||..+..
T Consensus 22 ~~~~C~IC~~~----~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHI----LADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSB----CSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcH----hcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 36789999986 45678899999999999999998656789999999754
No 35
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2e-13 Score=85.17 Aligned_cols=49 Identities=22% Similarity=0.599 Sum_probs=40.8
Q ss_pred cCcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
...+..|+||++.+. . +.++|||.||..|+.+|+. ....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~----~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRA----D-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCC----S-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCcc----C-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccC
Confidence 345789999998643 3 7899999999999999998 56889999988743
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.31 E-value=9.8e-13 Score=90.73 Aligned_cols=52 Identities=31% Similarity=0.648 Sum_probs=42.4
Q ss_pred Cccccccccccccccc---CCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 11 AMHHNCPICFEFIFDT---MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~---~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
+.+..|+||++.+.+. ...++.++|||+||..||.+|+. .+..||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCc
Confidence 4578999999976432 23348899999999999999998 4568999999974
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=78.64 Aligned_cols=45 Identities=27% Similarity=0.886 Sum_probs=36.8
Q ss_pred cCcccccccccccccccCCccEEecCCCcccHHHHHhhhcc--ccCCCCCC
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH--YRYTCPVC 58 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~--~~~~CP~C 58 (140)
...+..|+||++.+ .+++.++|||+||..||.+|+.. ....||+|
T Consensus 12 ~~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYL----KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBC----SSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCccc----CccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34578999999864 45677999999999999999754 56789998
No 38
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.31 E-value=2e-12 Score=87.73 Aligned_cols=50 Identities=28% Similarity=0.611 Sum_probs=39.9
Q ss_pred ccccccccccccccc--------------CCccEEecCCCcccHHHHHhhhccccCCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDT--------------MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~--------------~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~ 62 (140)
.+..|+||++.|.+. ....+.++|||.||..||.+|+. .+.+||+||+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcc
Confidence 457899999886432 11356689999999999999998 468899999985
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.31 E-value=6.4e-13 Score=95.15 Aligned_cols=49 Identities=24% Similarity=0.556 Sum_probs=42.1
Q ss_pred cccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
.+..|+||++. +.+|++++|||+||..||..|+......||+||..+..
T Consensus 77 ~~~~C~IC~~~----~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQEL----VYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSB----CSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChh----hcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 35789999985 46688899999999999999998666689999999754
No 40
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=83.94 Aligned_cols=49 Identities=35% Similarity=0.747 Sum_probs=40.9
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhcc-----ccCCCCCCCCCCc
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH-----YRYTCPVCSKSLW 63 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~-----~~~~CP~CR~~~~ 63 (140)
..+..|+||++.+ ..++.++|||+||..|+..|+.. ....||+||..+.
T Consensus 17 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELL----TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCC----SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCccc----CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4578999999864 45677899999999999999875 2678999999974
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.29 E-value=2.2e-12 Score=87.00 Aligned_cols=49 Identities=22% Similarity=0.571 Sum_probs=41.2
Q ss_pred CcccccccccccccccCCccEEe-cCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 11 AMHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l-~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
..+..|+||++.+ .+++.+ +|||+||..||.+|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYF----IDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBC----SSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred CCcCCCccCChHH----hCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 4578999999863 457777 99999999999999984 4889999999753
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=85.98 Aligned_cols=48 Identities=25% Similarity=0.745 Sum_probs=40.2
Q ss_pred cccccccccccccccCCccEEe-cCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 12 MHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l-~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
.+..|+||++.+ .+++.+ +|||+||..||.+|+. .+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYF----NIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCCcccCChhh----CCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 357899999863 457777 9999999999999998 45789999998753
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.24 E-value=3.8e-12 Score=91.89 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=40.5
Q ss_pred cccccccccccccccCCccEEe-cCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 12 MHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l-~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
.+..|+||++.| .+++.+ +|||+||..||.+|+..+...||+||..+.
T Consensus 53 ~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDML----KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBC----SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHh----hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 356999999864 446666 999999999999999865788999999974
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=3.3e-12 Score=86.19 Aligned_cols=48 Identities=25% Similarity=0.681 Sum_probs=39.6
Q ss_pred cccccccccccccccCCccEEecCCCcccHHHHHhhhccc--cCCCCCCCCCCc
Q 032467 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSLW 63 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~--~~~CP~CR~~~~ 63 (140)
....|+||++. +..++.++|||+||..||.+|+... ...||+||..+.
T Consensus 20 ~~~~C~IC~~~----~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLEL----IKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCC----CSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCCcccChh----hcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 35789999986 3556778999999999999999743 358999999874
No 45
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.21 E-value=8.5e-12 Score=90.34 Aligned_cols=50 Identities=24% Similarity=0.588 Sum_probs=42.6
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
..++.|+||++. +.+|+.++|||+||..||.+|+..+...||+||..+..
T Consensus 16 ~~~~~C~IC~~~----~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMA----LREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSB----CSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChh----hcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 457899999986 45678899999999999999998655689999999754
No 46
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.20 E-value=3.5e-12 Score=78.81 Aligned_cols=52 Identities=25% Similarity=0.522 Sum_probs=41.7
Q ss_pred cccCcccccccccccccccCCccEEe--cCCCc-ccHHHHHhhhccccCCCCCCCCCCch
Q 032467 8 VERAMHHNCPICFEFIFDTMKDITVL--RCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 8 ~e~~~~~~C~IC~e~l~~~~~~~~~l--~CgH~-Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
++...+..|+||++. ..+++.+ ||||. ||..|+.+|+. .+..||+||..+..
T Consensus 3 l~~~~~~~C~IC~~~----~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 3 LPLNAIEPCVICQGR----PKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQM 57 (64)
T ss_dssp --CGGGSCCTTTSSS----CSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCE
T ss_pred CCCCCcCCCCcCCCC----CCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhc
Confidence 456778899999975 4556666 99999 89999999987 45789999999754
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.20 E-value=1.2e-11 Score=80.53 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=42.8
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
..++.||||++. +.+|++++|||+||+.||.+|+. ...+||+||..+..
T Consensus 12 p~~~~CpI~~~~----m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTL----MTDPVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSB----CSSEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred chheECcccCch----hcCCeECCCCCEECHHHHHHHHh-cCCCCCCCcCCCCh
Confidence 457899999975 57899999999999999999998 46899999998753
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=2.7e-12 Score=77.17 Aligned_cols=47 Identities=28% Similarity=0.508 Sum_probs=38.2
Q ss_pred ccCcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
|...+..|+||++.+ ..|+.|+|||+||..|+.+| ...||+||+.+.
T Consensus 2 ee~~~~~C~IC~~~~----~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 2 EEFQFLRCQQCQAEA----KCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CSCCCSSCSSSCSSC----BCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred CcccCCCceEeCCcc----CCeEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 345678999999863 45788999999999999884 357999999863
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.18 E-value=3.6e-12 Score=90.38 Aligned_cols=48 Identities=19% Similarity=0.402 Sum_probs=41.2
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCC
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~ 62 (140)
..++.|+||++. +.+|+.++|||+||..||.+|+..+...||+||..+
T Consensus 29 ~~~~~C~IC~~~----~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNV----LRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSB----CSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChh----hcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 457899999985 456788999999999999999986666899999874
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.17 E-value=1.9e-11 Score=81.92 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=42.8
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
..++.||||++. +.+|++++|||+||+.||.+|+. ...+||+||..+..
T Consensus 27 p~~~~CpI~~~~----m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTL----MTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSB----CSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCc----ccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCCh
Confidence 347899999975 67899999999999999999998 56899999998753
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.17 E-value=1.2e-11 Score=85.15 Aligned_cols=54 Identities=30% Similarity=0.637 Sum_probs=42.9
Q ss_pred cCccccccccccccccc---CCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 10 RAMHHNCPICFEFIFDT---MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~---~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
+.....|+||++.+.+. ...++.++|||+||..||.+|+.. ..+||+||..+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 34578899999876432 234478899999999999999984 5799999999743
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.14 E-value=2.1e-11 Score=77.20 Aligned_cols=44 Identities=25% Similarity=0.599 Sum_probs=37.6
Q ss_pred cccccccccccccccCCccEEecCCCc-ccHHHHHhhhccccCCCCCCCCCCch
Q 032467 12 MHHNCPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~CgH~-Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
.+..|+||++. ..+++.++|||. ||..|+.+| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDR----NIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSS----BCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCC----CCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 35789999975 466888999999 999999998 469999999754
No 53
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.1e-11 Score=77.89 Aligned_cols=52 Identities=23% Similarity=0.442 Sum_probs=41.2
Q ss_pred cCcccccccccccccccCCccEEecCC-----CcccHHHHHhhhccc-cCCCCCCCCCCc
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLRCG-----HTIHLECLKEMEKHY-RYTCPVCSKSLW 63 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~Cg-----H~Fc~~Cl~~~~~~~-~~~CP~CR~~~~ 63 (140)
.+.+..|.||++++.+ ..+.++||+ |.||..||.+|+... ..+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~--~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDD--ESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCS--SSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccC--CCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3456789999987543 345678996 999999999999864 368999999973
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=1e-11 Score=84.98 Aligned_cols=45 Identities=24% Similarity=0.689 Sum_probs=38.8
Q ss_pred cccccccccccccccCCccEEe-cCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 12 MHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l-~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
.+..|+||++. +..|+++ +|||+||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~----~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNI----LREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSC----CSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred hCCCCCCCChH----hhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 46899999986 4567788 9999999999999987 67999999874
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.13 E-value=4.4e-11 Score=79.86 Aligned_cols=49 Identities=20% Similarity=0.076 Sum_probs=42.6
Q ss_pred CcccccccccccccccCCccEEecCC-CcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCG-HTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~Cg-H~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
..++.||||++. +.+|++++|| |+||+.||.+|+.. ..+||+||..+..
T Consensus 20 p~~~~CpI~~~~----m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTL----MCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSB----CSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred cHhcCCcCcccc----ccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 457899999975 6789999999 99999999999984 6789999998753
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.12 E-value=1.4e-11 Score=75.90 Aligned_cols=50 Identities=24% Similarity=0.643 Sum_probs=40.3
Q ss_pred cCcccccccccccccccCCccEEe--cCCCc-ccHHHHHhhhccccCCCCCCCCCCch
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVL--RCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l--~CgH~-Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
++.+..|+||++. ..+++++ ||||. ||..|+.+|+.. +..||+||..+..
T Consensus 4 ~~~~~~C~IC~~~----~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 4 QNLLKPCSLCEKR----PRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGGGSBCTTTSSS----BSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CCcCCCCcccCCc----CCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 3457799999974 4555666 99998 999999999873 4789999999754
No 57
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.11 E-value=7.6e-12 Score=86.27 Aligned_cols=50 Identities=28% Similarity=0.622 Sum_probs=0.9
Q ss_pred ccccccccccccccc--------------CCccEEecCCCcccHHHHHhhhccccCCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDT--------------MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~--------------~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~ 62 (140)
.+..|+||++.|.+. ...++.++|||.||..||.+|+.. +.+||+||+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 110 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCee
Confidence 356899999986431 112344699999999999999984 67899999985
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=3.8e-11 Score=92.04 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=44.8
Q ss_pred cccCcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 8 VERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 8 ~e~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
.+...+..||||++. +.+|++++|||+||..||.+|+..+..+||+||.++..
T Consensus 203 ~~~~~~~~c~i~~~~----~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 203 RDIPDYLCGKISFEL----MREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCCSTTBCTTTCSB----CSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCCcccCCcCcCCH----hcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 345568899999975 67899999999999999999998655669999999853
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=9e-11 Score=77.57 Aligned_cols=46 Identities=33% Similarity=0.587 Sum_probs=39.1
Q ss_pred cccccccccccccccCCccEEec-CCCcccHHHHHhhhccc-----cCCCCC--CCCC
Q 032467 12 MHHNCPICFEFIFDTMKDITVLR-CGHTIHLECLKEMEKHY-----RYTCPV--CSKS 61 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~-CgH~Fc~~Cl~~~~~~~-----~~~CP~--CR~~ 61 (140)
.++.||||++. +.+|++++ |||+||..||.+|+... ...||+ |++.
T Consensus 6 ~~~~CPI~~~~----~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEE----MKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSB----CSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCch----hcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46899999975 56789995 99999999999999753 368999 9866
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.02 E-value=1.8e-10 Score=93.56 Aligned_cols=48 Identities=29% Similarity=0.635 Sum_probs=40.9
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
...|+||++. ...++.++|||.||..|+..|+......||+||..+..
T Consensus 332 ~~~C~ICle~----~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSS----BCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcC----CCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3689999985 46688999999999999999997556789999998743
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=9e-11 Score=74.33 Aligned_cols=43 Identities=26% Similarity=0.628 Sum_probs=35.8
Q ss_pred ccccccccccccccCCccEEecCCCc-ccHHHHHhhhccccCCCCCCCCCCch
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~-Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
+..|+||++. ..+++.++|||. ||..|+.++ ..||+||..+..
T Consensus 25 ~~~C~IC~~~----~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDR----NIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSS----CCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCcCCCC----CCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 5689999975 466788999999 999999754 569999998754
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.95 E-value=5.2e-10 Score=82.26 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=42.6
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
..++.||||++. +.+|++++|||+||..||..|+...+.+||+||..+..
T Consensus 104 p~~f~CPI~~el----m~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFEL----MREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSB----CSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCcccc----CCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 457899999975 56899999999999999999998644479999998753
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.92 E-value=4.2e-10 Score=72.21 Aligned_cols=44 Identities=30% Similarity=0.628 Sum_probs=37.3
Q ss_pred cccccccccccccccCCccEEecCCCc-ccHHHHHhhhccccCCCCCCCCCCch
Q 032467 12 MHHNCPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~CgH~-Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
.+..|+||++. ..+++.+||||. ||..|+..|. .||+||..+..
T Consensus 17 ~~~~C~IC~~~----~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEE----EINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSS----BCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCEeEEeCcc----cCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 35689999975 567889999999 9999999874 69999999754
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=3.2e-10 Score=70.77 Aligned_cols=46 Identities=24% Similarity=0.603 Sum_probs=37.9
Q ss_pred cCcccccccccccccccCCccEEecCCCc-ccHHHHHhhhccccCCCCCCCCCCch
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~CgH~-Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
+..+..|+||++. ..+++.+||||. ||..|+... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~----~~~~v~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNG----TVNWVLLPCRHTCLCDGCVKYF-----QQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSS----CCCCEETTTTBCCSCTTHHHHC-----SSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcC----CCCEEEECCCChhhhHHHHhcC-----CCCCCCCcchhc
Confidence 3457899999974 567889999999 999999842 579999999754
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=1.6e-09 Score=71.22 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=36.7
Q ss_pred CcccccccccccccccCCccEE-ecCCCcccHHHHHhhhcc----c---cCCCCC--CCCC
Q 032467 11 AMHHNCPICFEFIFDTMKDITV-LRCGHTIHLECLKEMEKH----Y---RYTCPV--CSKS 61 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~-l~CgH~Fc~~Cl~~~~~~----~---~~~CP~--CR~~ 61 (140)
+....|+||++++.. ..... .+|||.||..|+.+++.. + ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPV--EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBG--GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCccccc--ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 457899999987432 22223 379999999999998863 1 357999 9998
No 66
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=3e-09 Score=67.62 Aligned_cols=47 Identities=23% Similarity=0.612 Sum_probs=37.1
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhhhccc-cCCCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY-RYTCPVCSKSL 62 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~-~~~CP~CR~~~ 62 (140)
..+|+||++.+... ..-..|+|.||..||.+|+... ..+||+||...
T Consensus 15 i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 15 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred CCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 46899999976432 2333999999999999999753 37899999885
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.74 E-value=4.3e-09 Score=81.44 Aligned_cols=49 Identities=18% Similarity=0.459 Sum_probs=40.6
Q ss_pred CcccccccccccccccCCccEEe-cCCCcccHHHHHhhhcc-ccCCCCC--CCCCCc
Q 032467 11 AMHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKH-YRYTCPV--CSKSLW 63 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l-~CgH~Fc~~Cl~~~~~~-~~~~CP~--CR~~~~ 63 (140)
..+..||||++. +.+|++. .|||+||..||.+|+.. +...||+ ||+.+.
T Consensus 179 ~~el~CPIcl~~----f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKP----YEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSB----CSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCc----ccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 457899999986 5677775 99999999999999975 3468999 999864
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.66 E-value=1.3e-08 Score=61.99 Aligned_cols=50 Identities=24% Similarity=0.445 Sum_probs=39.0
Q ss_pred ccCcccccccccccccccCCccEEecCC--C---cccHHHHHhhhcc-ccCCCCCCCCCC
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITVLRCG--H---TIHLECLKEMEKH-YRYTCPVCSKSL 62 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~l~Cg--H---~Fc~~Cl~~~~~~-~~~~CP~CR~~~ 62 (140)
|++....|.||+++. ..+.++||. | .||..||.+|+.. ++.+||+|+..+
T Consensus 2 e~~~~~~CrIC~~~~----~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL----GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TTCSCCEETTTTEEC----SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCEeEEeecCC----CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 566778999999862 223457865 4 9999999999975 467899999886
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.65 E-value=7.9e-09 Score=82.92 Aligned_cols=43 Identities=23% Similarity=0.756 Sum_probs=37.1
Q ss_pred ccccccccccccccCCccEEecCCCc-ccHHHHHhhhccccCCCCCCCCCCch
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~-Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
+..|+||++. ...++.+||||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~----~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDK----EVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSS----BCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCc----CCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 5789999975 567889999999 999999988 469999999754
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.54 E-value=4.3e-08 Score=59.85 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=38.9
Q ss_pred cccccccccccccccCCccEEe-cCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 12 MHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l-~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
+.+.|||+++. +.+|+++ ++||+|.+.+|.+|+.. +.+||+.+..+.
T Consensus 2 ~~~~CpIs~~~----m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~ 49 (61)
T 2bay_A 2 SHMLCAISGKV----PRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLS 49 (61)
T ss_dssp --CCCTTTCSC----CSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCC
T ss_pred CeEEecCCCCC----CCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCC
Confidence 45789999986 4578888 99999999999999984 457999999874
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.48 E-value=2.6e-08 Score=79.78 Aligned_cols=54 Identities=28% Similarity=0.492 Sum_probs=39.9
Q ss_pred cCcccccccccccccccCCcc----EEecCCCcccHHHHHhhhccc----------cCCCCCCCCCCc
Q 032467 10 RAMHHNCPICFEFIFDTMKDI----TVLRCGHTIHLECLKEMEKHY----------RYTCPVCSKSLW 63 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~----~~l~CgH~Fc~~Cl~~~~~~~----------~~~CP~CR~~~~ 63 (140)
.....+|+||++.+.+...-| ..++|||.||..||.+|+.+. ...||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 345678999999865423333 135899999999999999742 146999999874
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.33 E-value=2.7e-07 Score=61.40 Aligned_cols=50 Identities=24% Similarity=0.394 Sum_probs=38.5
Q ss_pred ccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCchhhh
Q 032467 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSK 67 (140)
Q Consensus 15 ~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 67 (140)
-|++|--.+ ....+++||+|+||.+|+..|...+...||.|+..+.+++.
T Consensus 3 fC~~C~~Pi---~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPI---KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBC---SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCe---EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 377776432 23457789999999999999987667899999999866443
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.16 E-value=0.00019 Score=54.62 Aligned_cols=47 Identities=23% Similarity=0.621 Sum_probs=35.7
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhhhccc-cCCCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY-RYTCPVCSKSL 62 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~-~~~CP~CR~~~ 62 (140)
-..|.||.+.+.. ..+-..|+|.||..|+.+|+... ...||.|+...
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 5689999987542 22223599999999999998753 46899999874
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.52 E-value=0.00086 Score=43.95 Aligned_cols=44 Identities=25% Similarity=0.611 Sum_probs=34.4
Q ss_pred ccccccccccccccCCccEEecCC-CcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCG-HTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~Cg-H~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
.+.|-.|+-. .-..+.|. |.+|..||...+. ...+||+|.+.+.
T Consensus 28 ~~nCKsCWf~------~k~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFE------NKGLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSC------CSSEEECSSCEEEHHHHHHTCS-SSSEETTTTEECC
T ss_pred cccChhhccc------cCCeeeecchhhHHHHHHHHHh-hccCCcccCCcCC
Confidence 4679999842 22456787 9999999999887 4578999999873
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.48 E-value=0.0011 Score=43.27 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=25.8
Q ss_pred cccccccccccccccCCccEE--ecCCCcccHHHHHhh
Q 032467 12 MHHNCPICFEFIFDTMKDITV--LRCGHTIHLECLKEM 47 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~--l~CgH~Fc~~Cl~~~ 47 (140)
.+..|+||.+.+ ..+++. +.|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~---~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDP---AQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSS---CCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCC---CCCceEECCcCChHHhHHHCHHH
Confidence 357899999742 244555 899999999999984
No 76
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.86 E-value=0.18 Score=33.35 Aligned_cols=47 Identities=26% Similarity=0.546 Sum_probs=31.7
Q ss_pred CcccccccccccccccCCccEE-ecCCCcccHHHHHhhhcc---ccCCCCCCC
Q 032467 11 AMHHNCPICFEFIFDTMKDITV-LRCGHTIHLECLKEMEKH---YRYTCPVCS 59 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~-l~CgH~Fc~~Cl~~~~~~---~~~~CP~CR 59 (140)
..+..|.||.+. ....+.+. -.|+..||..|+...+.. ..+.||.|+
T Consensus 5 ~~~~~C~~C~~~--g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSP--GDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCC--CCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCC--CCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 457789999864 11122222 389999999999876542 457788775
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.55 E-value=0.11 Score=31.57 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=32.3
Q ss_pred cccccccccccccccCCccEE-ecCCCcccHHHHHhhhcc---ccCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDTMKDITV-LRCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~-l~CgH~Fc~~Cl~~~~~~---~~~~CP~CR~~ 61 (140)
....|.||.+. .. .+. -.|...||..|+...+.. +.+.||.|+..
T Consensus 11 ~~~~C~vC~~~----~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG----TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC----TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC----Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 35679999853 22 222 288899999999877653 46889999765
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=92.40 E-value=0.28 Score=31.68 Aligned_cols=58 Identities=19% Similarity=0.362 Sum_probs=41.0
Q ss_pred cccccCcccccccccccccccCCc-c--EEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 6 RCVERAMHHNCPICFEFIFDTMKD-I--TVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 6 ~c~e~~~~~~C~IC~e~l~~~~~~-~--~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
+=+.......|.||-+.+-....- + .--.|+--.|+.|++.-...++..||.|+..+.
T Consensus 9 kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 9 KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 334555667999999874221111 1 123788899999999877768889999999874
No 79
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=91.62 E-value=0.53 Score=32.87 Aligned_cols=48 Identities=17% Similarity=0.420 Sum_probs=34.6
Q ss_pred ccCcccccccccccccccCCccEE-ecCCCcccHHHHHhhh----------ccccCCCCCCCCC
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITV-LRCGHTIHLECLKEME----------KHYRYTCPVCSKS 61 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~-l~CgH~Fc~~Cl~~~~----------~~~~~~CP~CR~~ 61 (140)
++..+..|.||.+. .. ... =.|--+||..||..-+ ..+.+.||+|+..
T Consensus 59 ~Dg~~d~C~vC~~G----G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG----GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCC----SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCC----Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 45668899999963 22 221 1888999999999654 2357899999865
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.29 E-value=0.4 Score=27.08 Aligned_cols=44 Identities=27% Similarity=0.701 Sum_probs=28.9
Q ss_pred ccccccccccccCCccEEe--cCCCcccHHHHHhhhcc---ccCCCCCCCCC
Q 032467 15 NCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (140)
Q Consensus 15 ~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~~---~~~~CP~CR~~ 61 (140)
.|.||... . ....+++ .|...||..|+..-+.. +.+.||.|+..
T Consensus 2 ~C~vC~~~--~-~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK--G-EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS--S-CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC--C-CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 48888853 1 1122223 88899999999754332 46789999753
No 81
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=88.14 E-value=1.1 Score=29.55 Aligned_cols=48 Identities=25% Similarity=0.483 Sum_probs=29.5
Q ss_pred cccccccccccccc---cCCccEE--ecCCCcccHHHHHh------hhccccCCCCCCC
Q 032467 12 MHHNCPICFEFIFD---TMKDITV--LRCGHTIHLECLKE------MEKHYRYTCPVCS 59 (140)
Q Consensus 12 ~~~~C~IC~e~l~~---~~~~~~~--l~CgH~Fc~~Cl~~------~~~~~~~~CP~CR 59 (140)
....|.+|+..=.. ......+ -.|+..||..||.. .+....+.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 35679999863100 0111222 28999999999953 2333567888886
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.43 E-value=0.29 Score=28.98 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=33.2
Q ss_pred ccCcccccccccccccccCCccEEe--cCCCcccHHHHHhhhc---cccCCCCCCCCC
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEK---HYRYTCPVCSKS 61 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~---~~~~~CP~CR~~ 61 (140)
+...+..|.||.+. .. +++ .|.-.||..|+..-+. .+.+.||.|+..
T Consensus 7 ~~~~~~~C~vC~~~----g~--ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG----GE--IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC----SS--EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC----Cc--EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 44567789999863 11 222 7888999999987543 256889999653
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.29 E-value=0.25 Score=29.28 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=32.6
Q ss_pred cCcccccccccccccccCCccEEecCCCcccHHHHHhhhcc---ccCCCCCCCCCC
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH---YRYTCPVCSKSL 62 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~---~~~~CP~CR~~~ 62 (140)
+..+..|.||.+. ..-..--.|.-.||..|+..-+.. +.+.||.|+...
T Consensus 6 d~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456779999853 121111178889999999864432 468899998663
No 84
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=84.99 E-value=0.86 Score=31.26 Aligned_cols=50 Identities=18% Similarity=0.366 Sum_probs=34.1
Q ss_pred cccCcccccccccccccccCCccEEecCCCcccHHHHHhhh----------ccccCCCCCCCCC
Q 032467 8 VERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEME----------KHYRYTCPVCSKS 61 (140)
Q Consensus 8 ~e~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~----------~~~~~~CP~CR~~ 61 (140)
.++..+..|.||.+. .+-..-=.|-..||..||..-+ ..+.+.|++|+-.
T Consensus 52 d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345667889999963 2211111788999999999642 2356899999765
No 85
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.60 E-value=1.1 Score=40.25 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=42.7
Q ss_pred ccCcccccccccccccccCCccEEecCC-CcccHHHHHhhhccccCCCCCCCCCCch
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITVLRCG-HTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~l~Cg-H~Fc~~Cl~~~~~~~~~~CP~CR~~~~~ 64 (140)
+...+..|||-++. +.+|++++-| ++|=+..|.+|+.. +.+||+=|.++..
T Consensus 887 ~iP~~F~cPIs~~l----M~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTI----MKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSB----CSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhH----HhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc
Confidence 34557889999975 6789999998 69999999999985 6789999998753
No 86
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.87 E-value=0.18 Score=29.97 Aligned_cols=50 Identities=24% Similarity=0.470 Sum_probs=31.4
Q ss_pred cCcccccccccccccccCCccEEe--cCCCcccHHHHHhhhc----cccCCCCCCCCC
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEK----HYRYTCPVCSKS 61 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~----~~~~~CP~CR~~ 61 (140)
+.....|+||.....+. ...+- .|..-||..|+.--.. ...+.||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~--~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAAD--EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSS--SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCC--CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 34567899998764221 22222 7778899999864322 145789988654
No 87
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=82.11 E-value=0.67 Score=28.23 Aligned_cols=44 Identities=23% Similarity=0.591 Sum_probs=28.5
Q ss_pred ccccccccccccCCccEEe--cCCCcccHHHHHhhhcc---c-cCCCCCCCCC
Q 032467 15 NCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---Y-RYTCPVCSKS 61 (140)
Q Consensus 15 ~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~~---~-~~~CP~CR~~ 61 (140)
.|.||... + ....+++ .|...||..|+..-+.. + .+.||.|+..
T Consensus 20 ~C~~C~~~--~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGR--Q-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCC--S-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCc--C-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 45677742 1 1222333 78899999999864432 4 6789999754
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=81.84 E-value=1.2 Score=27.13 Aligned_cols=46 Identities=22% Similarity=0.446 Sum_probs=31.0
Q ss_pred ccccccccccccccCCccEEe--cCCCcccHHHHHhhhcc---ccCCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~~---~~~~CP~CR~~ 61 (140)
...|+||...- .....++ .|.-.||..|+..-... ..+.||.|+..
T Consensus 18 ~~~C~~C~~~~---~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 18 IWICPGCNKPD---DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EECBTTTTBCC---SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CcCCCCCCCCC---CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 45699998642 1222333 78889999999765432 46889999654
No 89
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=81.55 E-value=0.51 Score=29.42 Aligned_cols=43 Identities=23% Similarity=0.589 Sum_probs=27.9
Q ss_pred ccccccccccccCCccEEe--cCCCcccHHHHHhhhcc---cc-CCCCCCCC
Q 032467 15 NCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---YR-YTCPVCSK 60 (140)
Q Consensus 15 ~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~~---~~-~~CP~CR~ 60 (140)
.|.||... ......++ .|...||..|+..-+.. +. +.||.|+.
T Consensus 28 ~C~vC~~~---~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGR---QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCC---SCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCC---CCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46677653 12223333 78899999999875543 34 78999975
No 90
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.54 E-value=0.37 Score=35.26 Aligned_cols=46 Identities=17% Similarity=0.416 Sum_probs=33.0
Q ss_pred cCcccccccccccccccCCccEEe--cCCCcccHHHHHhhhcc---ccCCCCCCCCC
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~~---~~~~CP~CR~~ 61 (140)
...+..|.||.+. .. .++ .|...||..|+..-+.. +.+.||.|+..
T Consensus 4 d~~~~~C~~C~~~----g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----GD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSCSSBTTTCCC----EE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCC----Cc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 3456779999853 11 222 78899999999775542 56889999875
No 91
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.87 E-value=0.92 Score=28.19 Aligned_cols=45 Identities=22% Similarity=0.586 Sum_probs=29.7
Q ss_pred ccccccccccccccCCccEEe--cCCCcccHHHHHhhhcc---c-cCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---Y-RYTCPVCSK 60 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~~---~-~~~CP~CR~ 60 (140)
+-.|.||... + .....++ .|...||..|+..-+.. + .+.||.|..
T Consensus 26 ~c~C~vC~~~--~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGK--H-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCC--C-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCc--C-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3368888853 1 1222333 88899999999864432 4 678999974
No 92
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=80.86 E-value=0.85 Score=30.44 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=28.5
Q ss_pred cccceecCCCCCCCcccceeeecc-ccccCCCcccccccCC
Q 032467 87 NKMVWILCNDCGANSHVQFHVIAH-KCLSCKSYNTRQTRGD 126 (140)
Q Consensus 87 ~~~~~i~C~~C~~~~~~~~~~~~~-~C~~C~~~~~~~~~~~ 126 (140)
.......|.+|+...... .... .||.|++.+.+.+.|.
T Consensus 69 ~~p~~~~C~~CG~~~e~~--~~~~~~CP~Cgs~~~~i~~G~ 107 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKPN--ALDYGVCEKCHSKNVIITQGN 107 (119)
T ss_dssp EECCEEECSSSSCEECSC--CSTTCCCSSSSSCCCEEEESS
T ss_pred eccceEEcCCCCCEEeCC--CCCCCcCccccCCCcEEecCC
Confidence 345689999999876553 3456 8999999988877654
No 93
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=80.84 E-value=1.5 Score=27.98 Aligned_cols=45 Identities=20% Similarity=0.620 Sum_probs=30.0
Q ss_pred CcccccccccccccccCCccEEe---cCCCcccHHHHHhhh--c-------------cccCCCCCCCC
Q 032467 11 AMHHNCPICFEFIFDTMKDITVL---RCGHTIHLECLKEME--K-------------HYRYTCPVCSK 60 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l---~CgH~Fc~~Cl~~~~--~-------------~~~~~CP~CR~ 60 (140)
..|..|.||-.. ... ..+ -|+-+||..||++.- . ...++||-|..
T Consensus 13 ~~D~~C~VC~~~--t~~---~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 13 VNDEMCDVCEVW--TAE---SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCSCCCTTTCCC--CSS---CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCcccCccccc--ccc---ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 357889999742 111 223 578999999999951 1 13578999943
No 94
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=79.96 E-value=0.98 Score=28.78 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=26.7
Q ss_pred ccCcccccccccccccccCCccEEecCCCcccHHHHHhhh
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEME 48 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~ 48 (140)
++.....|.+|...|....+.-.--.||.+||..|.....
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3444567999998754322323334999999999977654
No 95
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=79.77 E-value=1 Score=28.29 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=26.5
Q ss_pred cccCcccccccccccccccCCccE-EecCCCcccHHHHHhh
Q 032467 8 VERAMHHNCPICFEFIFDTMKDIT-VLRCGHTIHLECLKEM 47 (140)
Q Consensus 8 ~e~~~~~~C~IC~e~l~~~~~~~~-~l~CgH~Fc~~Cl~~~ 47 (140)
++++....|.+|...|. .+.... --.||.+||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFT-TTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCC-TTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccc-cchhcccccCCCcEEChHHhCCe
Confidence 34556678999998753 333222 2389999999997653
No 96
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.65 E-value=0.62 Score=33.33 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=31.8
Q ss_pred cccccccccccccccCCccEE-ecCCCcccHHHHHhhhcc---ccCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDTMKDITV-LRCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~-l~CgH~Fc~~Cl~~~~~~---~~~~CP~CR~~ 61 (140)
.+..|.||.+. .. ... =.|.-.||..|+..-+.. +.+.||.|+..
T Consensus 3 ~~~~C~~C~~~----g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG----GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC----SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC----Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 35679999853 22 211 178899999998775543 46889999875
No 97
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.63 E-value=0.86 Score=29.21 Aligned_cols=47 Identities=17% Similarity=0.481 Sum_probs=32.6
Q ss_pred cCcccccccccccccccCCccEE-ecCCCcccHHHHHhhhcc---ccCCCCCCCCC
Q 032467 10 RAMHHNCPICFEFIFDTMKDITV-LRCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~-l~CgH~Fc~~Cl~~~~~~---~~~~CP~CR~~ 61 (140)
...+..|.||.+. .. .+. -.|.-.||..|+..-+.. +.+.||.|+..
T Consensus 22 d~n~~~C~vC~~~----g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP----GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS----SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC----CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3446789999963 22 221 178889999999775543 56889999855
No 98
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=78.27 E-value=1.7 Score=27.55 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=27.7
Q ss_pred cCcccccccccccccccCCccEEe--cCCCcccHHHHHhhhcc
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH 50 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~~ 50 (140)
.+..+.|.+|.|.|.+ ..-+.- .=+|.||..|-+..++.
T Consensus 12 ~~a~l~CtlC~erLEd--tHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLED--THFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSS--TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhcc--CceeeCCCccCCeeeccccHHHHHh
Confidence 5677899999997643 222222 22699999999998864
No 99
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=77.96 E-value=1.1 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=25.7
Q ss_pred cccCcccccccccccccccCCcc-EEecCCCcccHHHHHhh
Q 032467 8 VERAMHHNCPICFEFIFDTMKDI-TVLRCGHTIHLECLKEM 47 (140)
Q Consensus 8 ~e~~~~~~C~IC~e~l~~~~~~~-~~l~CgH~Fc~~Cl~~~ 47 (140)
++++....|.+|...|. .+... ---.||.+||..|....
T Consensus 14 ~~d~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 14 LKDDEATHCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp -CCCCCCBCTTTCCBCB-TTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCccCCcccCcCCccc-CccccccCCCCCCEEChHHhCCe
Confidence 44555668999998753 23322 22389999999997653
No 100
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=77.76 E-value=0.89 Score=31.38 Aligned_cols=39 Identities=21% Similarity=0.475 Sum_probs=27.7
Q ss_pred cccceecCCCCCCCccc-------------ceeee------ccccccCCCcccccccC
Q 032467 87 NKMVWILCNDCGANSHV-------------QFHVI------AHKCLSCKSYNTRQTRG 125 (140)
Q Consensus 87 ~~~~~i~C~~C~~~~~~-------------~~~~~------~~~C~~C~~~~~~~~~~ 125 (140)
.......|.+|+..... .+|++ ...||.|++.+...+.|
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G 123 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKG 123 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEES
T ss_pred ecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecC
Confidence 33468899999976432 23444 67899999998876554
No 101
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.63 E-value=1.2 Score=27.92 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=26.1
Q ss_pred cccCcccccccccccccccCCccE-EecCCCcccHHHHHh
Q 032467 8 VERAMHHNCPICFEFIFDTMKDIT-VLRCGHTIHLECLKE 46 (140)
Q Consensus 8 ~e~~~~~~C~IC~e~l~~~~~~~~-~l~CgH~Fc~~Cl~~ 46 (140)
++++.-..|.+|...|. .+...- --.||.+||..|...
T Consensus 9 ~pd~~~~~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFS-VLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSCCCCSSCSSSCCCCC-SSSCCEECSSSCCEECTTTSCE
T ss_pred ccCCCCCcCcCcCCccc-cchhhhhhcCCCcEEChhhcCC
Confidence 45666678999998753 333222 238999999999554
No 102
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=76.86 E-value=1.3 Score=29.95 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=25.6
Q ss_pred cccCcccccccccccccccCCcc-EEecCCCcccHHHHHhh
Q 032467 8 VERAMHHNCPICFEFIFDTMKDI-TVLRCGHTIHLECLKEM 47 (140)
Q Consensus 8 ~e~~~~~~C~IC~e~l~~~~~~~-~~l~CgH~Fc~~Cl~~~ 47 (140)
++++.-..|.+|...|. .+... .--.||++||..|....
T Consensus 64 ~~d~~~~~C~~C~~~Fs-~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 64 AEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCGGGCCBCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEE
T ss_pred ccCCCCCCCcCcCCccc-cccccccCCCCCeEEChHHhCCc
Confidence 34445568999998753 23322 22389999999996543
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=76.65 E-value=0.95 Score=29.89 Aligned_cols=44 Identities=20% Similarity=0.564 Sum_probs=28.3
Q ss_pred ccccccccccccCCccEEe--cCCCcccHHHHHhhhcc---ccCCCCCCCC
Q 032467 15 NCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---YRYTCPVCSK 60 (140)
Q Consensus 15 ~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~~---~~~~CP~CR~ 60 (140)
.|.||.+. .......++ .|...||..|+..-+.. +.+.||.|+.
T Consensus 63 ~C~vC~~~--~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQ--GKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCC--CCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCc--CCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57788753 111112222 78899999999765442 4678999985
No 104
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=76.60 E-value=2.8 Score=27.66 Aligned_cols=42 Identities=21% Similarity=0.490 Sum_probs=26.2
Q ss_pred CcccccccccccccccCCccEEe---cCCCcccHHHHHhhhcc---ccCCCCCCC
Q 032467 11 AMHHNCPICFEFIFDTMKDITVL---RCGHTIHLECLKEMEKH---YRYTCPVCS 59 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l---~CgH~Fc~~Cl~~~~~~---~~~~CP~CR 59 (140)
..+..|.+|.+. ...+.- .|--.||..|+. +.. +.+.||.|+
T Consensus 13 ~~~~~C~~C~~~-----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCGDG-----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTCCC-----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCcCCCC-----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 346779999842 222222 366899999987 332 456788664
No 105
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=76.47 E-value=1.2 Score=28.33 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=32.1
Q ss_pred CcccccccccccccccCCccEEe---cCCCcccHHHHHhhh-ccccCCCCCCCCC
Q 032467 11 AMHHNCPICFEFIFDTMKDITVL---RCGHTIHLECLKEME-KHYRYTCPVCSKS 61 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l---~CgH~Fc~~Cl~~~~-~~~~~~CP~CR~~ 61 (140)
..+..|.||.+. .+...-.+| .|.-.||..|+..-. ..+.+.||.|...
T Consensus 23 ~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 346789999964 111222233 788899999998542 3357889999644
No 106
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.00 E-value=0.24 Score=28.74 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=30.3
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhcc---ccCCCCCCCC
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH---YRYTCPVCSK 60 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~---~~~~CP~CR~ 60 (140)
..+..|.||.+. ..-..--.|.-.||..|+..-+.. +.+.||.|..
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 446789999863 121111288899999999864432 4577988854
No 107
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=75.72 E-value=1.4 Score=26.75 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=26.4
Q ss_pred ccCcccccccccccccccCCccEEecC-CCcccHHHHHhhh
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITVLRC-GHTIHLECLKEME 48 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~l~C-gH~Fc~~Cl~~~~ 48 (140)
++....-|.||.++ ...+-+.| |-.||.+|+.+.-
T Consensus 4 ~~ee~pWC~ICneD-----AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 4 GSSGLPWCCICNED-----ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SCCCCSSCTTTCSC-----CCEEETTTTSEEECSSHHHHHT
T ss_pred cCcCCCeeEEeCCC-----CeEEecCCCCceehHHHHHHHc
Confidence 34556789999974 34566789 8899999987754
No 108
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=75.38 E-value=0.57 Score=29.55 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=21.4
Q ss_pred cccccccccccc-CCccEEec-CCCcccHHHHHhh
Q 032467 15 NCPICFEFIFDT-MKDITVLR-CGHTIHLECLKEM 47 (140)
Q Consensus 15 ~C~IC~e~l~~~-~~~~~~l~-CgH~Fc~~Cl~~~ 47 (140)
-||=|...+... ....+.-+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 377676543221 22234444 9999999999998
No 109
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=74.33 E-value=0.58 Score=27.79 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=32.6
Q ss_pred CcccccccccccccccCCccEEe--cCCCcccHHHHHhhh------ccccCCCCCCCCC
Q 032467 11 AMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEME------KHYRYTCPVCSKS 61 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~------~~~~~~CP~CR~~ 61 (140)
..+..|.||..... ......++ .|.-.||..|+..-+ ..+.+.||.|...
T Consensus 4 ~~~~~C~vC~~~~~-~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYS-EAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCC-BTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCC-CCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999996411 11123333 888999999998633 2356889988644
No 110
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=73.95 E-value=1.5 Score=26.71 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=32.7
Q ss_pred cCcccccccccccccccCCccEEe--cCCCcccHHHHHhh-hccccCCCCCCCC
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEM-EKHYRYTCPVCSK 60 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~-~~~~~~~CP~CR~ 60 (140)
...+..|.||.+.-. ......++ .|.-.||..|+..- +..+.+.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s-~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGES-QNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCC-CSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCC-CCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 445778999986410 11223333 88899999999753 2335688998853
No 111
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=73.94 E-value=0.96 Score=30.01 Aligned_cols=46 Identities=24% Similarity=0.566 Sum_probs=27.7
Q ss_pred ccccccccccccc-----CCccEE-ecCCCcccHHHHHhh------hccccCCCCCCC
Q 032467 14 HNCPICFEFIFDT-----MKDITV-LRCGHTIHLECLKEM------EKHYRYTCPVCS 59 (140)
Q Consensus 14 ~~C~IC~e~l~~~-----~~~~~~-l~CgH~Fc~~Cl~~~------~~~~~~~CP~CR 59 (140)
..|.||+..-... ....+. -.|+..||..|+... +....+.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 4689998742110 011122 289999999999753 223467777774
No 112
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=73.02 E-value=1.2 Score=32.24 Aligned_cols=50 Identities=22% Similarity=0.520 Sum_probs=32.3
Q ss_pred cccccccccccccCCccEEe---cCCCcccHHHHHhhh------c----cccCCCCCCCCCCc
Q 032467 14 HNCPICFEFIFDTMKDITVL---RCGHTIHLECLKEME------K----HYRYTCPVCSKSLW 63 (140)
Q Consensus 14 ~~C~IC~e~l~~~~~~~~~l---~CgH~Fc~~Cl~~~~------~----~~~~~CP~CR~~~~ 63 (140)
..||||...+.+......++ .|..-||..|..--- . ...+.||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 46999987654432111233 677899999984321 1 12589999998754
No 113
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.26 E-value=0.57 Score=28.06 Aligned_cols=47 Identities=19% Similarity=0.531 Sum_probs=32.0
Q ss_pred cCcccccccccccccccCCccEE-ecCCCcccHHHHHhhhc---cccCCCCCCCCC
Q 032467 10 RAMHHNCPICFEFIFDTMKDITV-LRCGHTIHLECLKEMEK---HYRYTCPVCSKS 61 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~-l~CgH~Fc~~Cl~~~~~---~~~~~CP~CR~~ 61 (140)
...+..|.||.+. . ..+. -.|.-.||..|+..-+. .+.+.||.|...
T Consensus 5 ~~~~~~C~vC~~~----g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG----G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC----S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC----C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4567889999963 1 2222 27888999999986443 256789999643
No 114
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=71.98 E-value=6.1 Score=25.36 Aligned_cols=45 Identities=22% Similarity=0.489 Sum_probs=28.8
Q ss_pred cccccccccccccCCccEEe--cCCCcccHHHHHhhhcc--ccCCCCCCCCCC
Q 032467 14 HNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH--YRYTCPVCSKSL 62 (140)
Q Consensus 14 ~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~~--~~~~CP~CR~~~ 62 (140)
..| ||.... ....++. .|.-.||..|+..-... ..+.||.|+..-
T Consensus 29 vrC-iC~~~~---~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 29 TRC-ICGFTH---DDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRN 77 (98)
T ss_dssp CCC-TTSCCS---CSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSC
T ss_pred EEe-ECCCcc---CCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCC
Confidence 346 787541 1223333 88899999998753322 358899998653
No 115
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=71.46 E-value=5.6 Score=28.14 Aligned_cols=50 Identities=16% Similarity=0.499 Sum_probs=35.9
Q ss_pred ccccCcccccccccccccccCCccEEe---cCCCcccHHHHHhhhcc---------ccCCCCCCCCC
Q 032467 7 CVERAMHHNCPICFEFIFDTMKDITVL---RCGHTIHLECLKEMEKH---------YRYTCPVCSKS 61 (140)
Q Consensus 7 c~e~~~~~~C~IC~e~l~~~~~~~~~l---~CgH~Fc~~Cl~~~~~~---------~~~~CP~CR~~ 61 (140)
-.++..+..|.||-+. .....- .|...||..||..++.. ..+.|=+|.-.
T Consensus 73 ~DeDG~~~yC~wC~~G-----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 73 YDDDGYQSYCTICCGG-----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp BCTTSSBSSCTTTSCC-----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred cCCCCCcceeeEecCC-----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 4567888999999963 222222 47789999999988653 25779898755
No 116
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=71.45 E-value=0.66 Score=27.16 Aligned_cols=47 Identities=23% Similarity=0.534 Sum_probs=31.2
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhc---cccCCCCCCCCC
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK---HYRYTCPVCSKS 61 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~---~~~~~CP~CR~~ 61 (140)
..+..|.||... ..-..--.|.-.||..|+..-+. .+.+.||.|...
T Consensus 3 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 346789999863 12111128889999999986443 246789999543
No 117
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=70.47 E-value=1.2 Score=32.12 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=30.7
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhhhc---cccCCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK---HYRYTCPVCSKS 61 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~---~~~~~CP~CR~~ 61 (140)
+..|.+|.+. ..-..--.|.-.||..|+..-+. .+.+.||.|+..
T Consensus 2 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC----SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC----CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4569999853 22112227888999999976443 256889999865
No 118
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=70.01 E-value=4.4 Score=32.35 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=31.2
Q ss_pred ccccccccccccccCCccEEecCCCcccH--HHHHhhhc-cccCCCCCCCCCCc
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHL--ECLKEMEK-HYRYTCPVCSKSLW 63 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~--~Cl~~~~~-~~~~~CP~CR~~~~ 63 (140)
.+.|||=+..| ..+.+...|.|.-|. .=+..+.. ...+.||+|.+.+.
T Consensus 215 SL~CPlS~~ri---~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRL---TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBC---SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCcccee---ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 56799887543 245566799999444 33333322 24689999999874
No 119
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=69.97 E-value=4.2 Score=32.63 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=31.5
Q ss_pred cccccccccccccccCCccEEecCCCcccHH--HHHhhhc-cccCCCCCCCCCCc
Q 032467 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLE--CLKEMEK-HYRYTCPVCSKSLW 63 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~--Cl~~~~~-~~~~~CP~CR~~~~ 63 (140)
..+.||+=+..| ..+.+...|.|.-|.+ -+..+.. ...+.||+|.+.+.
T Consensus 248 vSL~CPlS~~ri---~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRM---KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBC---SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccc---cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 357889887643 2455667999985443 3333322 24689999998863
No 120
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=68.98 E-value=0.66 Score=29.34 Aligned_cols=41 Identities=24% Similarity=0.583 Sum_probs=26.3
Q ss_pred cccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~ 62 (140)
|+..||.|..+|.... ++.+|..|-..+.. ...||-|..++
T Consensus 1 M~~~CP~C~~~l~~~~--------~~~~C~~C~~~~~~--~afCPeCgq~L 41 (81)
T 2jrp_A 1 MEITCPVCHHALERNG--------DTAHCETCAKDFSL--QALCPDCRQPL 41 (81)
T ss_dssp CCCCCSSSCSCCEECS--------SEEECTTTCCEEEE--EEECSSSCSCC
T ss_pred CCCCCCCCCCccccCC--------CceECccccccCCC--cccCcchhhHH
Confidence 4578999998753211 14457777555443 23799998886
No 121
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.96 E-value=0.81 Score=29.36 Aligned_cols=45 Identities=24% Similarity=0.499 Sum_probs=30.2
Q ss_pred ccccccccccccccCCccEEe--cCCCcccHHHHHhhhc---cccCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEK---HYRYTCPVCSK 60 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~---~~~~~CP~CR~ 60 (140)
+..|.||... . ....+++ .|...||..|+..-+. .+.+.||.|+.
T Consensus 16 ~~~C~vC~~~--~-~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 16 SYICQVCSRG--D-EDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCSSSCCS--G-GGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCccCCCc--C-CCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 4679999864 1 1222333 8889999999975433 24678999953
No 122
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=66.60 E-value=3.1 Score=25.20 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=22.6
Q ss_pred cccccccccccccCCccEEecCCCcccHHHHHhh
Q 032467 14 HNCPICFEFIFDTMKDITVLRCGHTIHLECLKEM 47 (140)
Q Consensus 14 ~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~ 47 (140)
..|.+|...|.-..+.----.||.+||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 5799999875322222222389999999997543
No 123
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=66.14 E-value=0.85 Score=29.85 Aligned_cols=41 Identities=29% Similarity=0.626 Sum_probs=27.4
Q ss_pred cccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~ 62 (140)
|+..||+|..+|.- .=|+.+|..|-..+.. ...||-|..++
T Consensus 31 M~~~CP~Cq~eL~~--------~g~~~hC~~C~~~f~~--~a~CPdC~q~L 71 (101)
T 2jne_A 31 MELHCPQCQHVLDQ--------DNGHARCRSCGEFIEM--KALCPDCHQPL 71 (101)
T ss_dssp CCCBCSSSCSBEEE--------ETTEEEETTTCCEEEE--EEECTTTCSBC
T ss_pred ccccCccCCCccee--------cCCEEECccccchhhc--cccCcchhhHH
Confidence 57899999976531 1134457777665543 35699998886
No 124
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.43 E-value=5.7 Score=24.33 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=29.4
Q ss_pred cccccccccccccccCCccEEe--cCCCcccHHHHHhhhc----cccCCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEK----HYRYTCPVCSKSL 62 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~----~~~~~CP~CR~~~ 62 (140)
....| ||...... ...++- .|.--||..|+.--.. ...+.||.|+...
T Consensus 11 ~~~~C-~C~~~~d~--~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNV--NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCS--SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCC--CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34556 89875321 122222 7888999999853221 2468899998763
No 125
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=64.31 E-value=0.69 Score=28.81 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=13.8
Q ss_pred cCCCcccHHHHHhhhc
Q 032467 34 RCGHTIHLECLKEMEK 49 (140)
Q Consensus 34 ~CgH~Fc~~Cl~~~~~ 49 (140)
.||+.||..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5999999999998843
No 126
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=63.87 E-value=5.3 Score=24.21 Aligned_cols=46 Identities=22% Similarity=0.556 Sum_probs=28.2
Q ss_pred cccccccccccccccCCccEEe--c--CC-CcccHHHHHhhhc-cccCCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDTMKDITVL--R--CG-HTIHLECLKEMEK-HYRYTCPVCSKSL 62 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l--~--Cg-H~Fc~~Cl~~~~~-~~~~~CP~CR~~~ 62 (140)
....| ||...- .. .++. . |. ..||..|+.--.. .+.+.||.|+...
T Consensus 15 ~~~~C-~C~~~~---~g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVS---YG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCS---CS-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCC---CC-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 34567 898742 12 2332 4 65 6899999972211 1568899998653
No 127
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=63.75 E-value=2.8 Score=28.24 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=26.6
Q ss_pred ccCcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCC
Q 032467 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 58 (140)
Q Consensus 9 e~~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~C 58 (140)
+++....|..|...|....+.-.--.||.+||..|...... ....|-.|
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C 63 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLC 63 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHH
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHH
Confidence 34556689999987532222223349999999999766543 22345555
No 128
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=62.50 E-value=3.6 Score=21.54 Aligned_cols=16 Identities=38% Similarity=0.794 Sum_probs=11.7
Q ss_pred cCCCCCCCCCCchhhh
Q 032467 52 RYTCPVCSKSLWDMSK 67 (140)
Q Consensus 52 ~~~CP~CR~~~~~~~~ 67 (140)
.+.||+|++.+.....
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 4789999988765443
No 129
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.78 E-value=3.5 Score=26.40 Aligned_cols=45 Identities=22% Similarity=0.673 Sum_probs=27.7
Q ss_pred cccccccccccccccCCccEEe---c--CC-CcccHHHHHhhhc-cccCCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDTMKDITVL---R--CG-HTIHLECLKEMEK-HYRYTCPVCSKSL 62 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l---~--Cg-H~Fc~~Cl~~~~~-~~~~~CP~CR~~~ 62 (140)
....| ||....+ . .++ . |. ..||..|+.--.. .+.+.||.|+...
T Consensus 35 e~~yC-iC~~~~~---g--~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY---G--EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC---S--CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC---C--CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 34567 9987522 1 133 3 55 5799999872211 1468899998653
No 130
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.61 E-value=0.82 Score=29.05 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=32.7
Q ss_pred cccccccccccccccC-CccEEe--cCCCcccHHHHHhhhc-------cccCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDTM-KDITVL--RCGHTIHLECLKEMEK-------HYRYTCPVCSKS 61 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~-~~~~~l--~CgH~Fc~~Cl~~~~~-------~~~~~CP~CR~~ 61 (140)
.+..|.||... +.. ...+++ .|...||..|+..-+. .+.+.|+.|+..
T Consensus 15 ~~~~C~vC~~~--~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQM--TVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCC--CCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCC--CCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 46689999964 111 123444 8899999999987543 256889999644
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=60.42 E-value=3.7 Score=25.94 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=23.2
Q ss_pred ccccccccccccccCCcc-EEecCCCcccHHHHHhh
Q 032467 13 HHNCPICFEFIFDTMKDI-TVLRCGHTIHLECLKEM 47 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~-~~l~CgH~Fc~~Cl~~~ 47 (140)
...|.+|...|.. +... ---.||.+||..|....
T Consensus 9 ~~~C~~C~~~F~~-~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 9 ESRCYGCAVKFTL-FKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CSBCTTTCCBCCS-SSCEEECSSSCCEEETTTSCEE
T ss_pred CCCCcCcCCcccC-ccccccCCCCCCEEChhHcCCc
Confidence 4579999987532 3222 22389999999997654
No 132
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=60.05 E-value=2.4 Score=23.95 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=25.4
Q ss_pred ccccccccccccCCccEEe---cCCCcccHHHHHhhhc---cccCCCCCCC
Q 032467 15 NCPICFEFIFDTMKDITVL---RCGHTIHLECLKEMEK---HYRYTCPVCS 59 (140)
Q Consensus 15 ~C~IC~e~l~~~~~~~~~l---~CgH~Fc~~Cl~~~~~---~~~~~CP~CR 59 (140)
.|.||.....+ ....+. .|.--||..|+.--.. ...+.||.|+
T Consensus 4 ~cc~C~~p~~~--~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD--KVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT--TCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCC--CCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47888876422 122222 4777899999754221 2568899885
No 133
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=59.64 E-value=3 Score=31.19 Aligned_cols=44 Identities=20% Similarity=0.569 Sum_probs=25.9
Q ss_pred ccccccccccccCCccEEe--cCCCcccHHHHHhhhcc---c-cCCCCCCCCC
Q 032467 15 NCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---Y-RYTCPVCSKS 61 (140)
Q Consensus 15 ~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~~---~-~~~CP~CR~~ 61 (140)
.|.+|... .... ..++ .|...||..|+..-+.. + .+.||.|+..
T Consensus 176 ~C~vC~~~--~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGR--QDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCC--CC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCC--CCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 58888752 1112 2222 88899999999965442 4 5789999753
No 134
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=59.63 E-value=2.5 Score=21.22 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=11.9
Q ss_pred cCCCCCCCCCCchhhh
Q 032467 52 RYTCPVCSKSLWDMSK 67 (140)
Q Consensus 52 ~~~CP~CR~~~~~~~~ 67 (140)
.+.||+|+..+.+...
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 4679999988776544
No 135
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=59.07 E-value=3.1 Score=28.51 Aligned_cols=50 Identities=18% Similarity=0.428 Sum_probs=32.8
Q ss_pred cccccccccccc-cccCCccEEecCCCcccHHHHHhhhc---cccCCCCCCCCC
Q 032467 12 MHHNCPICFEFI-FDTMKDITVLRCGHTIHLECLKEMEK---HYRYTCPVCSKS 61 (140)
Q Consensus 12 ~~~~C~IC~e~l-~~~~~~~~~l~CgH~Fc~~Cl~~~~~---~~~~~CP~CR~~ 61 (140)
.+..|.+|...| +.......-..|.|.+|..|-..... ...+.|-+|++.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 467899999987 33223334459999999999654311 124668888654
No 136
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=58.34 E-value=3.7 Score=26.91 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=11.1
Q ss_pred cccHHHHHhhhcc
Q 032467 38 TIHLECLKEMEKH 50 (140)
Q Consensus 38 ~Fc~~Cl~~~~~~ 50 (140)
-||+.||.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 137
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=57.55 E-value=4 Score=26.70 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=10.8
Q ss_pred cccHHHHHhhhc
Q 032467 38 TIHLECLKEMEK 49 (140)
Q Consensus 38 ~Fc~~Cl~~~~~ 49 (140)
-||+.||.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 138
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=55.34 E-value=13 Score=29.85 Aligned_cols=52 Identities=17% Similarity=0.429 Sum_probs=37.9
Q ss_pred ccccccCcccccccccccccccCCccEE-e--cCCCcccHHHHHhhhcc---------ccCCCCCCCCC
Q 032467 5 HRCVERAMHHNCPICFEFIFDTMKDITV-L--RCGHTIHLECLKEMEKH---------YRYTCPVCSKS 61 (140)
Q Consensus 5 h~c~e~~~~~~C~IC~e~l~~~~~~~~~-l--~CgH~Fc~~Cl~~~~~~---------~~~~CP~CR~~ 61 (140)
....++..+..|.+|-+. .. .+. = .|...||..||...+-. ..+.|=+|.-.
T Consensus 85 f~~D~DG~~~yCr~C~~G----g~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 85 FLYDDDGYQSYCSICCSG----ET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp TCBCSSSSBCSCTTTCCC----SS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccCCCCCcccceEcCCC----Ce-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 344577889999999963 22 222 1 78899999999998732 35889999866
No 139
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=54.08 E-value=1 Score=29.62 Aligned_cols=49 Identities=24% Similarity=0.469 Sum_probs=31.1
Q ss_pred ccccccccccccccCCccEEe--cCCCcccHHHHHhhh---------ccccCCCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEME---------KHYRYTCPVCSKSL 62 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~---------~~~~~~CP~CR~~~ 62 (140)
...|+||...+.+. ...+.- .|.--||..|+.--. ....+.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~-~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDD-QDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTT-SCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCC-CCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46799999875432 222222 567889999985321 11458899998653
No 140
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.02 E-value=6.6 Score=22.18 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=17.6
Q ss_pred ceecCCCCCCCcccceeeeccccccCC
Q 032467 90 VWILCNDCGANSHVQFHVIAHKCLSCK 116 (140)
Q Consensus 90 ~~i~C~~C~~~~~~~~~~~~~~C~~C~ 116 (140)
..-+|..|+...-...|.-++.|+.|+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCC
Confidence 345677777654455566677777776
No 141
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.28 E-value=13 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.522 Sum_probs=19.7
Q ss_pred eecCCC--CCCCcccceeeeccccccCC-Ccccccc
Q 032467 91 WILCND--CGANSHVQFHVIAHKCLSCK-SYNTRQT 123 (140)
Q Consensus 91 ~i~C~~--C~~~~~~~~~~~~~~C~~C~-~~~~~~~ 123 (140)
...|.. |.+.. ++..+|..|+ .|...|+
T Consensus 12 ~~~Cs~~~Ck~~~-----ll~f~C~~C~~~FC~~HR 42 (63)
T 1x4v_A 12 TNKCERAGCRQRE-----MMKLTCERCSRNFCIKHR 42 (63)
T ss_dssp CCCCCSTTCCCCC-----SSCCBCSSSCCBCCHHHH
T ss_pred CCCCCccCCCCCC-----ccceECCCCCcccCcccC
Confidence 345666 87662 3566899998 8888887
No 142
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=51.10 E-value=10 Score=25.78 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=18.8
Q ss_pred ecCCCCCCCcccceeeecccccc--CCCcc
Q 032467 92 ILCNDCGANSHVQFHVIAHKCLS--CKSYN 119 (140)
Q Consensus 92 i~C~~C~~~~~~~~~~~~~~C~~--C~~~~ 119 (140)
..|.+|....+. |+.+.|.. |++|.
T Consensus 35 ~~C~~C~~~~~L---wlCL~CG~vgCgr~~ 61 (129)
T 2g45_A 35 WKCSKCDMRENL---WLNLTDGSILCGRRY 61 (129)
T ss_dssp CCCSSSSCCSSE---EEETTTCCEEECCBC
T ss_pred CcCccccCcCce---EEeccCCccccCccc
Confidence 469999987554 78888886 77664
No 143
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=49.23 E-value=6.6 Score=28.95 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=23.3
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhh
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEM 47 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~ 47 (140)
+..|.+|...|.-..+.-.--.||.+||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45899999875422222233489999999996653
No 144
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=49.09 E-value=8.5 Score=22.52 Aligned_cols=27 Identities=30% Similarity=0.709 Sum_probs=21.8
Q ss_pred cccceecCCCCCCCcccceeeeccccccCC
Q 032467 87 NKMVWILCNDCGANSHVQFHVIAHKCLSCK 116 (140)
Q Consensus 87 ~~~~~i~C~~C~~~~~~~~~~~~~~C~~C~ 116 (140)
..+..++|..|+. ..||.--..|..|+
T Consensus 13 ~~ktH~~CrRCG~---~syH~qK~~Ca~CG 39 (57)
T 1vq8_1 13 NTTTHTKCRRCGE---KSYHTKKKVCSSCG 39 (57)
T ss_dssp CCCCEEECTTTCS---EEEETTTTEETTTC
T ss_pred CCCccccccccCC---hhhhcccccccccc
Confidence 3467899999997 56777788888888
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=48.26 E-value=6.7 Score=28.63 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=22.9
Q ss_pred ccccccccccccccCCccEE-ecCCCcccHHHHHhh
Q 032467 13 HHNCPICFEFIFDTMKDITV-LRCGHTIHLECLKEM 47 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~-l~CgH~Fc~~Cl~~~ 47 (140)
+..|.+|...|. .+..... -.||+.||..|....
T Consensus 161 ~~~C~~C~~~F~-~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFT-FTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCC-SSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccC-CcccccccCCcCCEEChHHhCCe
Confidence 468999988753 2332222 389999999986543
No 146
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=48.22 E-value=10 Score=24.93 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=23.7
Q ss_pred cceecCCCCCCCcccceeeeccccccCCCccccc
Q 032467 89 MVWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQ 122 (140)
Q Consensus 89 ~~~i~C~~C~~~~~~~~~~~~~~C~~C~~~~~~~ 122 (140)
.....|.+|+-.+ ..--....+|+.|+|-|.+.
T Consensus 65 v~p~~C~~CG~~F-~~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 65 IKPAQCRKCGFVF-KAEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp ECCCBBTTTCCBC-CCCSSCCSSCSSSCCCCBCC
T ss_pred EECcChhhCcCee-cccCCCCCCCcCCCCCccCC
Confidence 4678899999876 11123557999999987654
No 147
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=47.89 E-value=3 Score=29.28 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=29.7
Q ss_pred cCcccccccccccccccCCccEEe--cCCCcccHHHHHhhhc----cccCCCCCCCCC
Q 032467 10 RAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEK----HYRYTCPVCSKS 61 (140)
Q Consensus 10 ~~~~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~----~~~~~CP~CR~~ 61 (140)
......| ||.....+ ....+- .|.-.||..|+.-... ...+.||.|+..
T Consensus 5 ~~~~~~C-~C~~~~~~--~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDE--SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCT--TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCC--CCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 3456678 99864211 111222 7888999999953211 246889999864
No 148
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=47.42 E-value=3.9 Score=32.47 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred cccccccccccccccCCccEEecCCCcccHHHHHhh
Q 032467 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEM 47 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~ 47 (140)
....|.+|...|.-..+.-.--.||++||..|....
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp ------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 346799998765322222233489999999997654
No 149
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=44.50 E-value=4.7 Score=24.20 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=28.0
Q ss_pred CcccccccccccccccCCccEEe--cCCCcccHHHHHhhhc--cccCCCCCCCC
Q 032467 11 AMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEK--HYRYTCPVCSK 60 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~--~~~~~CP~CR~ 60 (140)
.....| ||..... ...++. .|.--||..|+.--.. ...+.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~---~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA---GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT---TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC---CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345567 8986422 222222 6788899999864332 14578888864
No 150
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=42.25 E-value=15 Score=23.55 Aligned_cols=27 Identities=33% Similarity=0.758 Sum_probs=22.4
Q ss_pred cccceecCCCCCCCcccceeeeccccccCC
Q 032467 87 NKMVWILCNDCGANSHVQFHVIAHKCLSCK 116 (140)
Q Consensus 87 ~~~~~i~C~~C~~~~~~~~~~~~~~C~~C~ 116 (140)
..+..++|..|+. ..||.--..|..|+
T Consensus 12 ~~KtHtlCrRCG~---~syH~qK~~Ca~CG 38 (94)
T 3iz5_l 12 RNKTHTLCVRCGR---RSFHLQKSTCSSCG 38 (94)
T ss_dssp CCCSEEECTTTCS---EEEEGGGTEETTTC
T ss_pred CCCccceecCcCc---hhhhcccccccccC
Confidence 3457899999997 56788888999998
No 151
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=42.12 E-value=8.9 Score=22.58 Aligned_cols=29 Identities=24% Similarity=0.543 Sum_probs=21.2
Q ss_pred ceecCCCCCCCcccceeeeccccccCCCcccccc
Q 032467 90 VWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQT 123 (140)
Q Consensus 90 ~~i~C~~C~~~~~~~~~~~~~~C~~C~~~~~~~~ 123 (140)
....|..|++. .. -...|++||-|.-++.
T Consensus 29 ~l~~c~~cGe~--~~---~H~vc~~CG~Y~gr~V 57 (60)
T 3v2d_5 29 TLVPCPECKAM--KP---PHTVCPECGYYAGRKV 57 (60)
T ss_dssp CCEECTTTCCE--EC---TTSCCTTTCEETTEEC
T ss_pred ceeECCCCCCe--ec---ceEEcCCCCcCCCEEe
Confidence 47889999874 22 3456999998887654
No 152
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=42.07 E-value=15 Score=21.88 Aligned_cols=28 Identities=32% Similarity=0.705 Sum_probs=20.2
Q ss_pred cceecCCCCCCCcccceeeeccccccCCC
Q 032467 89 MVWILCNDCGANSHVQFHVIAHKCLSCKS 117 (140)
Q Consensus 89 ~~~i~C~~C~~~~~~~~~~~~~~C~~C~~ 117 (140)
.+..+|.+|+....... ....+|+.|+.
T Consensus 19 ~v~Y~C~~Cg~~~~l~~-~~~iRC~~CG~ 46 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQA-KEVIRCRECGH 46 (63)
T ss_dssp CCCCBCSSSCCBCCCCS-SSCCCCSSSCC
T ss_pred CeEEECCCCCCeeecCC-CCceECCCCCc
Confidence 36788999988765543 45678988883
No 153
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=40.64 E-value=19 Score=25.02 Aligned_cols=49 Identities=14% Similarity=0.320 Sum_probs=33.1
Q ss_pred ccccccccccccccc-CCccEEecCCCcccHHHHHhhhc-cccCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDT-MKDITVLRCGHTIHLECLKEMEK-HYRYTCPVCSKS 61 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~-~~~~~~l~CgH~Fc~~Cl~~~~~-~~~~~CP~CR~~ 61 (140)
.+..|.+|...|.-. .....-..|.|.+|..|-. |.. ...+.|-+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 478999999875221 2233445999999999973 332 245778888765
No 154
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=40.32 E-value=16 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.791 Sum_probs=22.1
Q ss_pred ccceecCCCCCCCcccceeeeccccccCC
Q 032467 88 KMVWILCNDCGANSHVQFHVIAHKCLSCK 116 (140)
Q Consensus 88 ~~~~i~C~~C~~~~~~~~~~~~~~C~~C~ 116 (140)
.+..++|..|+. ..||.--..|..|+
T Consensus 13 ~KtHtlCrRCG~---~syH~qK~~Ca~CG 38 (94)
T 4a18_A 13 QKTHTLCRRCGK---ATYHKQKLRCAACG 38 (94)
T ss_dssp CCCEEECTTTCS---EEEETTTTEESSSC
T ss_pred CCccceecCcCc---hhhhhccccccccC
Confidence 457899999997 56788888999998
No 155
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=40.29 E-value=9.8 Score=19.00 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=16.4
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHH
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECL 44 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl 44 (140)
...|+.|...++... .+..=|..||..|+
T Consensus 3 ~~~C~~C~k~Vy~~E---k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE---KVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG---CCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecce---eEEECCeEecccCC
Confidence 456777876654321 22344677777663
No 156
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=40.07 E-value=17 Score=21.52 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=20.5
Q ss_pred CcccccccccccccccCCccEE-e-cCCCcccHHHHH
Q 032467 11 AMHHNCPICFEFIFDTMKDITV-L-RCGHTIHLECLK 45 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~-l-~CgH~Fc~~Cl~ 45 (140)
.....|++|...+.+. ...+. - .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~-~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDD-QDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTT-SCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCC-CCeEecccCccccCchhccC
Confidence 3456899999875432 22222 2 677889999974
No 157
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=39.49 E-value=14 Score=22.43 Aligned_cols=28 Identities=18% Similarity=0.517 Sum_probs=19.2
Q ss_pred cceecCCCCCCCcccceeeeccccccCCC
Q 032467 89 MVWILCNDCGANSHVQFHVIAHKCLSCKS 117 (140)
Q Consensus 89 ~~~i~C~~C~~~~~~~~~~~~~~C~~C~~ 117 (140)
.+...|.+|+..+.... .-..+|+.||.
T Consensus 26 ~v~Y~C~~CG~~~e~~~-~d~irCp~CG~ 53 (70)
T 1twf_L 26 TLKYICAECSSKLSLSR-TDAVRCKDCGH 53 (70)
T ss_dssp CCCEECSSSCCEECCCT-TSTTCCSSSCC
T ss_pred eEEEECCCCCCcceeCC-CCCccCCCCCc
Confidence 46788999998744431 23457888885
No 158
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=37.98 E-value=16 Score=32.11 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=28.3
Q ss_pred EecCCCcccHHHHHhhhccccCCCCCCCCCCchhhhHHHHHHHHHhcCCCChhhhcccceecCCCCCCCcccceeeeccc
Q 032467 32 VLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHK 111 (140)
Q Consensus 32 ~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~C~~C~~~~~~~~~~~~~~ 111 (140)
+|...+.+...++..|-. ..||+|+.... +.+......++ .....|.+|....+. |+++.
T Consensus 173 i~~~~~~~~~~~~~~w~~---~~~~~c~h~~~--------~~~~~~~~~~~------~~~~~C~~c~~~~~l---w~CL~ 232 (854)
T 3ihp_A 173 LLSADSASRKQEVQAWDG---EVRQVSKHAFS--------LKQLDNPARIP------PCGWKCSKCDMRENL---WLNLT 232 (854)
T ss_dssp HTC-------------------CCCBCTTTTT--------CCCCSSCCCCC------SSCCCCSSSCCCSSE---EEETT
T ss_pred HHhcCCHHHHHHHHhhcC---ccCCCCcCccc--------cccccccccCC------CCCCcCcCcCCcCce---EEEec
Confidence 345667888999999865 34999987731 10000001111 123569999987654 68888
Q ss_pred ccc--CCCcc
Q 032467 112 CLS--CKSYN 119 (140)
Q Consensus 112 C~~--C~~~~ 119 (140)
|+. |+++.
T Consensus 233 Cg~vgC~r~~ 242 (854)
T 3ihp_A 233 DGSILCGRRY 242 (854)
T ss_dssp TCCEEECCBC
T ss_pred CCCccccccc
Confidence 884 76443
No 159
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=37.23 E-value=41 Score=17.59 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=9.9
Q ss_pred cCCCCCCCCCCchhh
Q 032467 52 RYTCPVCSKSLWDMS 66 (140)
Q Consensus 52 ~~~CP~CR~~~~~~~ 66 (140)
.+.|+.|.+.+....
T Consensus 4 ~~~C~~C~~~f~~~~ 18 (57)
T 3uk3_C 4 SRECSYCGKFFRSNY 18 (57)
T ss_dssp -CBCTTTCCBCSCHH
T ss_pred CccCCCCcchhCChH
Confidence 367888888875533
No 160
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=36.46 E-value=21 Score=22.51 Aligned_cols=10 Identities=40% Similarity=1.215 Sum_probs=8.5
Q ss_pred CCCCCCCCCC
Q 032467 53 YTCPVCSKSL 62 (140)
Q Consensus 53 ~~CP~CR~~~ 62 (140)
..||+|..++
T Consensus 9 ~~~PlCG~~L 18 (95)
T 2k5c_A 9 AKCPICGSPL 18 (95)
T ss_dssp EECSSSCCEE
T ss_pred ccCCcCCCcc
Confidence 4699999987
No 161
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=36.32 E-value=23 Score=22.93 Aligned_cols=27 Identities=26% Similarity=0.762 Sum_probs=21.6
Q ss_pred cccceecCCCCCCCcccceeeeccccccCC
Q 032467 87 NKMVWILCNDCGANSHVQFHVIAHKCLSCK 116 (140)
Q Consensus 87 ~~~~~i~C~~C~~~~~~~~~~~~~~C~~C~ 116 (140)
..+..++|..|+.. .||.-...|..|+
T Consensus 12 ~~KtH~lCrRCG~~---sfH~qK~~CgkCG 38 (97)
T 2zkr_2 12 RNKTHTLCRRCGSK---AYHLQKSTCGKCG 38 (97)
T ss_dssp CCCCEECCTTTCSS---CEETTSCCBTTTC
T ss_pred cCCCCCcCCCCCCc---cCcCccccCcccC
Confidence 34578999999974 5688888899998
No 162
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=35.97 E-value=23 Score=20.75 Aligned_cols=29 Identities=28% Similarity=0.635 Sum_probs=21.8
Q ss_pred ceecCCCCCCCcccceeeeccccccCCCcccccc
Q 032467 90 VWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQT 123 (140)
Q Consensus 90 ~~i~C~~C~~~~~~~~~~~~~~C~~C~~~~~~~~ 123 (140)
....|..|++. +.-...|++||-|.-++.
T Consensus 29 ~l~~c~~cG~~-----~~pH~vc~~CG~Y~gr~v 57 (60)
T 2zjr_Z 29 NLTECPQCHGK-----KLSHHICPNCGYYDGRQV 57 (60)
T ss_dssp CCEECTTTCCE-----ECTTBCCTTTCBSSSBCS
T ss_pred CceECCCCCCE-----eCCceEcCCCCcCCCEEe
Confidence 56789999975 234567999999987664
No 163
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=35.79 E-value=14 Score=22.21 Aligned_cols=11 Identities=36% Similarity=1.068 Sum_probs=8.7
Q ss_pred cCCCCCCCCCC
Q 032467 52 RYTCPVCSKSL 62 (140)
Q Consensus 52 ~~~CP~CR~~~ 62 (140)
-..||+|+..+
T Consensus 8 iL~CP~ck~~L 18 (69)
T 2pk7_A 8 ILACPICKGPL 18 (69)
T ss_dssp TCCCTTTCCCC
T ss_pred heeCCCCCCcC
Confidence 36799999876
No 164
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.74 E-value=19 Score=21.33 Aligned_cols=24 Identities=33% Similarity=0.820 Sum_probs=20.2
Q ss_pred ceecCCCCCCCcccceeeeccccccCC
Q 032467 90 VWILCNDCGANSHVQFHVIAHKCLSCK 116 (140)
Q Consensus 90 ~~i~C~~C~~~~~~~~~~~~~~C~~C~ 116 (140)
..++|..|+. ..||.--..|..|+
T Consensus 16 tH~lCrRCG~---~syH~qK~~Ca~CG 39 (62)
T 3j21_e 16 THIRCRRCGR---VSYNVKKGYCAACG 39 (62)
T ss_dssp CCCBCSSSCS---BCEETTTTEETTTC
T ss_pred ceeeecccCc---chhccccccccccC
Confidence 6899999997 46777888898888
No 165
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=33.51 E-value=21 Score=23.33 Aligned_cols=30 Identities=23% Similarity=0.550 Sum_probs=21.4
Q ss_pred eecCCCCCCCcccceeeecccccc--CCCcccccc
Q 032467 91 WILCNDCGANSHVQFHVIAHKCLS--CKSYNTRQT 123 (140)
Q Consensus 91 ~i~C~~C~~~~~~~~~~~~~~C~~--C~~~~~~~~ 123 (140)
...|.+|....+. |+.+.|.. |+++...++
T Consensus 24 ~~~C~~C~~~~~~---W~CL~CG~vgCgr~~~~HA 55 (109)
T 3c5k_A 24 TQPCGDCGTIQEN---WVCLSCYQVYCGRYINGHM 55 (109)
T ss_dssp TCCCTTTCCCSSE---EEETTTCCEEECTTTTCHH
T ss_pred CCcCccccCCCCe---eeeeecCccccCCCcChHH
Confidence 4569999987654 68888885 777765553
No 166
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.81 E-value=13 Score=22.36 Aligned_cols=45 Identities=27% Similarity=0.535 Sum_probs=27.5
Q ss_pred ccccccccccccccCCccEEe--cCCCcccHHHHHhhhc--------cccCCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEK--------HYRYTCPVCSKS 61 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~--------~~~~~CP~CR~~ 61 (140)
...| ||..... ...++. .|.--||..|+.--.. ...+.||.|+..
T Consensus 16 ~~~C-~C~~~~~---~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHN---NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCC---SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccC---CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4566 8987532 112222 7888999999853211 246889988643
No 167
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=31.37 E-value=43 Score=17.48 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=8.1
Q ss_pred CCCCCCCCCCch
Q 032467 53 YTCPVCSKSLWD 64 (140)
Q Consensus 53 ~~CP~CR~~~~~ 64 (140)
+.|+.|.+.+..
T Consensus 2 ~~C~~C~~~f~~ 13 (57)
T 1bbo_A 2 YICEECGIRXKK 13 (57)
T ss_dssp CBCTTTCCBCSS
T ss_pred CcCCCCcCcCCC
Confidence 457778777654
No 168
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=30.04 E-value=27 Score=19.98 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=15.9
Q ss_pred eecCCCCCCCcccceeeeccccccCC
Q 032467 91 WILCNDCGANSHVQFHVIAHKCLSCK 116 (140)
Q Consensus 91 ~i~C~~C~~~~~~~~~~~~~~C~~C~ 116 (140)
...|..|+...-...|+-++.|..|+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCg 43 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCG 43 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTC
T ss_pred cccCcCCCCceeEeccCCEEECCCCC
Confidence 35677777543344556667777776
No 169
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=29.92 E-value=37 Score=18.50 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=7.3
Q ss_pred cccccCC-Ccccccc
Q 032467 110 HKCLSCK-SYNTRQT 123 (140)
Q Consensus 110 ~~C~~C~-~~~~~~~ 123 (140)
+.|..|| .|....+
T Consensus 25 lvC~~CG~v~~e~~i 39 (50)
T 1pft_A 25 IVCAKCGYVIEENII 39 (50)
T ss_dssp EEESSSCCBCCCCCC
T ss_pred EECcccCCccccccc
Confidence 4666666 3444444
No 170
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=29.66 E-value=16 Score=24.55 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=20.2
Q ss_pred EecCCCcccHHHHHhhhcc----ccCCCCCCCCC
Q 032467 32 VLRCGHTIHLECLKEMEKH----YRYTCPVCSKS 61 (140)
Q Consensus 32 ~l~CgH~Fc~~Cl~~~~~~----~~~~CP~CR~~ 61 (140)
...|-|.+...++..|... ....|+.|++.
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~ 37 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTD 37 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTC
T ss_pred CCCCcChhhccccccccccccCCCCCcCcccccc
Confidence 4679999988877766432 13568888765
No 171
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.55 E-value=20 Score=20.81 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=11.8
Q ss_pred hhccccCCCCCCCCCC
Q 032467 47 MEKHYRYTCPVCSKSL 62 (140)
Q Consensus 47 ~~~~~~~~CP~CR~~~ 62 (140)
|+......||.|+..+
T Consensus 1 wi~~~~k~CP~C~~~I 16 (60)
T 1wd2_A 1 WIAANTKECPKCHVTI 16 (60)
T ss_dssp CCCCCCCCCTTTCCCC
T ss_pred CccccceECcCCCCee
Confidence 4444557899999887
No 172
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.53 E-value=22 Score=27.62 Aligned_cols=27 Identities=22% Similarity=0.726 Sum_probs=22.4
Q ss_pred ccceecCCCCCCCcccceeeeccccccCCCc
Q 032467 88 KMVWILCNDCGANSHVQFHVIAHKCLSCKSY 118 (140)
Q Consensus 88 ~~~~i~C~~C~~~~~~~~~~~~~~C~~C~~~ 118 (140)
......|.-|+ ..||+.+.+|++|+.-
T Consensus 205 G~R~l~Cs~C~----t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 205 GLRYLSCSLCA----CEWHYVRIKCSHCEES 231 (309)
T ss_dssp CEEEEEETTTC----CEEECCTTSCSSSCCC
T ss_pred CcEEEEeCCCC----CEEeecCcCCcCCCCC
Confidence 34578899998 6789999999999964
No 173
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.51 E-value=26 Score=20.10 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=8.3
Q ss_pred ccccccccccc
Q 032467 14 HNCPICFEFIF 24 (140)
Q Consensus 14 ~~C~IC~e~l~ 24 (140)
+.||+|...|.
T Consensus 11 L~CP~c~~~L~ 21 (56)
T 2kpi_A 11 LACPACHAPLE 21 (56)
T ss_dssp CCCSSSCSCEE
T ss_pred eeCCCCCCcce
Confidence 68999987653
No 174
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.93 E-value=5.6 Score=23.89 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=26.9
Q ss_pred cccccccccccccccCCccEEe--cCCCcccHHHHHhhhc---cccCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEK---HYRYTCPVCSK 60 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l--~CgH~Fc~~Cl~~~~~---~~~~~CP~CR~ 60 (140)
....| ||.....+ ....+- .|.--||..|+.--.. ...+.||.|+.
T Consensus 15 ~~~~C-~C~~~~~~--g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDD--GERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCC--SSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCC--CCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 35568 79864211 112222 6777889999764321 24577888864
No 175
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.29 E-value=58 Score=19.66 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=28.1
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
.....|+.|.+.+. ...+..-|..||..| ++|-.|++.+.
T Consensus 23 ~~~~~C~~C~~~I~----~~~v~a~~~~~H~~C---------F~C~~C~~~L~ 62 (90)
T 2dar_A 23 KRTPMCAHCNQVIR----GPFLVALGKSWHPEE---------FNCAHCKNTMA 62 (90)
T ss_dssp TCCCBBSSSCCBCC----SCEEEETTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCCccCCCEec----ceEEEECCccccccC---------CccCCCCCCCC
Confidence 34567999998653 234456688888776 56999998874
No 176
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=27.20 E-value=5.7 Score=23.14 Aligned_cols=42 Identities=24% Similarity=0.710 Sum_probs=25.4
Q ss_pred ccccccccccccccCCccEEe---c--CC-CcccHHHHHhhhc-cccCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVL---R--CG-HTIHLECLKEMEK-HYRYTCPVCSK 60 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l---~--Cg-H~Fc~~Cl~~~~~-~~~~~CP~CR~ 60 (140)
...| ||...- .. .++ . |. ..||..|+.--.. .+.+.||.|+.
T Consensus 10 ~~~C-~C~~~~---~g--~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS---YG--EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC---CS--EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC---CC--CEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 4556 898641 22 234 4 55 6799999972111 15678998864
No 177
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.20 E-value=48 Score=19.30 Aligned_cols=61 Identities=25% Similarity=0.449 Sum_probs=37.5
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCchhhhHHHHHHHHHhcCCCChhhhccccee
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWI 92 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 92 (140)
...|+.|.+.+........+..-|..||..| ++|-.|++.+... .|-.....+
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C---------F~C~~C~~~L~~~------------------~f~~~~g~~ 57 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC---------FNCGKCSVSLVGK------------------GFLTQNKEI 57 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG---------CBCTTTCCBCSSS------------------CEEEETTEE
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc---------CChhhCCCcCCCC------------------ceEeECCEE
Confidence 3568999887542001134455678888877 5699999886321 111233568
Q ss_pred cCCCCCCC
Q 032467 93 LCNDCGAN 100 (140)
Q Consensus 93 ~C~~C~~~ 100 (140)
+|..|-.+
T Consensus 58 yC~~cy~~ 65 (76)
T 1x68_A 58 FCQKCGSG 65 (76)
T ss_dssp EETTTTCC
T ss_pred ECHHHhhh
Confidence 88888754
No 178
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.19 E-value=25 Score=20.55 Aligned_cols=28 Identities=25% Similarity=0.630 Sum_probs=19.2
Q ss_pred ecCCCCCCCcccceeeeccccccCCCccccc
Q 032467 92 ILCNDCGANSHVQFHVIAHKCLSCKSYNTRQ 122 (140)
Q Consensus 92 i~C~~C~~~~~~~~~~~~~~C~~C~~~~~~~ 122 (140)
+.|+.|+... .-+.+.+|..|..|..-+
T Consensus 12 ~~Cd~C~~~p---i~G~RykC~~C~d~DLC~ 39 (63)
T 2e5r_A 12 VECSYCHSES---MMGFRYRCQQCHNYQLCQ 39 (63)
T ss_dssp SCCSSSCCCS---SCSCEEEESSCSSCEECH
T ss_pred CCCcCCCCcc---eecceEEecCCCCchhHH
Confidence 7899998642 225667888887775543
No 179
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.64 E-value=32 Score=21.13 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=18.3
Q ss_pred eecCCCCCCCcccceeeeccccccCC-Cccccccc
Q 032467 91 WILCNDCGANSHVQFHVIAHKCLSCK-SYNTRQTR 124 (140)
Q Consensus 91 ~i~C~~C~~~~~~~~~~~~~~C~~C~-~~~~~~~~ 124 (140)
...|..|+++... ++.+|. |+ .|+..|+.
T Consensus 25 ~nRC~~CrKkvgL----~gf~Cr-Cg~~FCs~HRy 54 (74)
T 1wfl_A 25 KNRCFMCRKKVGL----TGFDCR-CGNLFCGLHRY 54 (74)
T ss_dssp TTBCSSSCCBCGG----GCEECT-TSCEECSSSCS
T ss_pred CCcChhhCCcccc----cCeecC-CCCEechhcCC
Confidence 3468888887333 455777 77 56666553
No 180
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.57 E-value=73 Score=18.04 Aligned_cols=40 Identities=25% Similarity=0.540 Sum_probs=27.4
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
...|..|.+.+... ..++..=|..||..| ++|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~--~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPG--SRKLEYGGQTWHEHC---------FLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSS--SCEECSTTCCEETTT---------CBCTTTCCBTT
T ss_pred CCCCccCCCccccC--ccEEEECccccCccc---------CeECCCCCcCC
Confidence 45789998865421 234556788888877 46889988863
No 181
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.10 E-value=62 Score=18.07 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=10.7
Q ss_pred cCCCCCCCCCCchhh
Q 032467 52 RYTCPVCSKSLWDMS 66 (140)
Q Consensus 52 ~~~CP~CR~~~~~~~ 66 (140)
.+.|+.|.+.+....
T Consensus 17 ~~~C~~C~k~f~~~~ 31 (74)
T 2lce_A 17 PYKCDRCQASFRYKG 31 (74)
T ss_dssp SBCCTTSSCCBSCHH
T ss_pred CeECCCCCceeCCHH
Confidence 467999988875533
No 182
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.89 E-value=66 Score=18.32 Aligned_cols=41 Identities=24% Similarity=0.389 Sum_probs=26.9
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~ 62 (140)
...|.-|.+.+.......++..-|..||..| ++|-.|++.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C---------F~C~~C~~~L 45 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC---------FNCKKCSLSL 45 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT---------CBCSSSCCBC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc---------CEeccCCCcC
Confidence 4578999887542001123445688888877 4699999886
No 183
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.73 E-value=41 Score=20.00 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=19.9
Q ss_pred ceecCCCCCCCcccceeeeccccccCC-CcccccccC
Q 032467 90 VWILCNDCGANSHVQFHVIAHKCLSCK-SYNTRQTRG 125 (140)
Q Consensus 90 ~~i~C~~C~~~~~~~~~~~~~~C~~C~-~~~~~~~~~ 125 (140)
....|..|+++... ++.+| .|+ .|+..|+.+
T Consensus 14 ~~~rC~~C~kkvgl----~~f~C-rCg~~FC~~HRy~ 45 (64)
T 1wfh_A 14 RPNRCTVCRKRVGL----TGFMC-RCGTTFCGSHRYP 45 (64)
T ss_dssp SCCCCTTTCCCCCT----TCEEC-SSSCEECTTTCST
T ss_pred cCCcChhhCCccCc----cCEEe-ecCCEeccccCCc
Confidence 44678899887443 35567 477 666666643
No 184
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.58 E-value=39 Score=20.10 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=19.0
Q ss_pred ceecCCCCCCCcccceeeeccccccCC-Cccccccc
Q 032467 90 VWILCNDCGANSHVQFHVIAHKCLSCK-SYNTRQTR 124 (140)
Q Consensus 90 ~~i~C~~C~~~~~~~~~~~~~~C~~C~-~~~~~~~~ 124 (140)
....|..|+++..+ ++.+| .|+ .|+..|+.
T Consensus 14 ~~~rC~~C~kkvgl----~~f~C-rCg~~FC~~HR~ 44 (64)
T 1wg2_A 14 PNNRCFSCNKKVGV----MGFKC-KCGSTFCGSHRY 44 (64)
T ss_dssp CSCSCTTTCCCCTT----SCEEC-TTSCEECSSSCS
T ss_pred cCCcChhhCCcccc----cCeEe-ecCCEecccCCC
Confidence 34578889887433 34567 577 66666654
No 185
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.38 E-value=98 Score=18.01 Aligned_cols=40 Identities=30% Similarity=0.634 Sum_probs=26.4
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
...|+.|.+.+... ..++..=|..||..| ++|-.|++.+.
T Consensus 15 ~~~C~~C~~~I~~~--~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAG--DQNVEYKGTVWHKDC---------FTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSS--SCEEECSSCEEETTT---------CCCSSSCCCCT
T ss_pred CCcCccCCcccccC--ceEEEECcccccccc---------CchhhCCCccC
Confidence 45788888765421 223445577888776 56889988863
No 186
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=25.34 E-value=6.8 Score=22.75 Aligned_cols=44 Identities=20% Similarity=0.568 Sum_probs=26.4
Q ss_pred cccccccccccccccCCccEEe--c--CC-CcccHHHHHhhhc-cccCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDTMKDITVL--R--CG-HTIHLECLKEMEK-HYRYTCPVCSK 60 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l--~--Cg-H~Fc~~Cl~~~~~-~~~~~CP~CR~ 60 (140)
...-| ||.+.. .. .++. . |. ..||..|+.--.. .+.+.||.|+.
T Consensus 8 e~~yC-~C~~~~---~g-~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS---YG-EMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC---CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC---CC-CeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 34556 898741 12 2222 4 65 6899999972211 14678998864
No 187
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.24 E-value=54 Score=18.94 Aligned_cols=42 Identities=19% Similarity=0.395 Sum_probs=27.4
Q ss_pred CcccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 11 ~~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
.....|+-|.+.+... ..++..=|..||..| ++|-.|++.+.
T Consensus 9 ~~~~~C~~C~~~I~~~--~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 50 (77)
T 1g47_A 9 LASATCERCKGGFAPA--EKIVNSNGELYHEQC---------FVCAQCFQQFP 50 (77)
T ss_dssp CCCCBCSSSCCBCCST--TTCEEETTEEECTTT---------CCCTTTCCCCG
T ss_pred CCCCCchhcCCccCCC--ceEEEeCccEecccc---------CeECCCCCCCC
Confidence 3456799999875422 222334577888776 56889988874
No 188
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.13 E-value=50 Score=18.80 Aligned_cols=40 Identities=20% Similarity=0.480 Sum_probs=26.6
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
...|..|.+.+... ..++..=|..||..| ++|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~--~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x4k_A 5 SSGCQECKKTIMPG--TRKMEYKGSSWHETC---------FICHRCQQPIG 44 (72)
T ss_dssp CCCBSSSCCCCCSS--SCEEEETTEEEETTT---------TCCSSSCCCCC
T ss_pred CCCCccCCCcccCC--ceEEEECcCeecccC---------CcccccCCccC
Confidence 35789998865421 224445677888776 46889988864
No 189
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=25.09 E-value=11 Score=21.26 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=15.9
Q ss_pred ecCCCcccHHHHHhhhccccCCCCCCCCCC
Q 032467 33 LRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (140)
Q Consensus 33 l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~ 62 (140)
+.||++|=.+=++.+ ...+||.|...+
T Consensus 7 ~rCg~~fs~~el~~l---P~IrCpyCGyri 33 (48)
T 4ayb_P 7 GKCWKTFTDEQLKVL---PGVRCPYCGYKI 33 (48)
T ss_dssp CCTTTTCCCCCSCCC---SSSCCTTTCCSC
T ss_pred eccCCCccHHHHhhC---CCcccCccCcEE
Confidence 567777743211111 246799998876
No 190
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.72 E-value=49 Score=13.92 Aligned_cols=12 Identities=33% Similarity=1.063 Sum_probs=8.7
Q ss_pred CCCCCCCCCCch
Q 032467 53 YTCPVCSKSLWD 64 (140)
Q Consensus 53 ~~CP~CR~~~~~ 64 (140)
+.|+.|.+.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 468888888754
No 191
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.68 E-value=38 Score=19.02 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=11.0
Q ss_pred ccCCCCCCCCCCch
Q 032467 51 YRYTCPVCSKSLWD 64 (140)
Q Consensus 51 ~~~~CP~CR~~~~~ 64 (140)
..+.||.|.+.+.-
T Consensus 11 ~~~~CPrCn~~f~~ 24 (49)
T 2e72_A 11 GRKICPRCNAQFRV 24 (49)
T ss_dssp SCCCCTTTCCCCSS
T ss_pred CceeCCcccccccc
Confidence 46789999998744
No 192
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=24.31 E-value=55 Score=17.30 Aligned_cols=12 Identities=25% Similarity=0.955 Sum_probs=8.6
Q ss_pred CCCCCCCCCCch
Q 032467 53 YTCPVCSKSLWD 64 (140)
Q Consensus 53 ~~CP~CR~~~~~ 64 (140)
+.|+.|.+.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (60)
T 2adr_A 3 FVCEVCTRAFAR 14 (60)
T ss_dssp BCCTTTCCCBSC
T ss_pred CcCCCCccccCC
Confidence 568888877654
No 193
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=24.05 E-value=59 Score=18.25 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=8.8
Q ss_pred CCCCCCCCCCchh
Q 032467 53 YTCPVCSKSLWDM 65 (140)
Q Consensus 53 ~~CP~CR~~~~~~ 65 (140)
+.|+.|.+.+...
T Consensus 5 y~C~~C~k~F~~~ 17 (60)
T 4gzn_C 5 FFCNFCGKTYRDA 17 (60)
T ss_dssp EECTTTCCEESSH
T ss_pred ccCCCCCCEeCCH
Confidence 5688887776543
No 194
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=23.95 E-value=57 Score=18.93 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=23.8
Q ss_pred ccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCC
Q 032467 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 58 (140)
Q Consensus 15 ~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~C 58 (140)
.|--|+..+.+. ....-..|++.||.+|=.-.-+ .--.||-|
T Consensus 17 ~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHD-SLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTT-TSCSSSTT
T ss_pred cccccCcccCCC-ccEECCccCcCcccchhHHHHh-hccCCcCC
Confidence 477787654221 1112347889999998432222 23468877
No 195
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.62 E-value=31 Score=23.70 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=18.3
Q ss_pred ceecCCCCCCCcccceeeeccccccCCCc
Q 032467 90 VWILCNDCGANSHVQFHVIAHKCLSCKSY 118 (140)
Q Consensus 90 ~~i~C~~C~~~~~~~~~~~~~~C~~C~~~ 118 (140)
....|..|+..+... .-...|+.||+-
T Consensus 131 ~~y~C~~Cg~~~~~~--~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTL--PPGGVCPDCGSK 157 (165)
T ss_dssp CCEEESSSCCEESSC--CGGGBCTTTCCB
T ss_pred EEEECCCCCCcccCC--CCCCcCCCCCCc
Confidence 467899999765432 223479999974
No 196
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=23.60 E-value=1.7e+02 Score=25.30 Aligned_cols=90 Identities=22% Similarity=0.527 Sum_probs=51.3
Q ss_pred CccccccCcccccccccccccc------cCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCchhhhHHHHHHHH-H
Q 032467 4 KHRCVERAMHHNCPICFEFIFD------TMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQE-I 76 (140)
Q Consensus 4 ~h~c~e~~~~~~C~IC~e~l~~------~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~l~~~-~ 76 (140)
+-+|-...-...||+|.-.+.+ ....-..+.||-.||..|++.+.... +...+.-..|+..... .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~~--------~~~~~~~~~w~~~~~~~~ 75 (776)
T 4gut_A 4 SRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSH--------KDGYDKYTTWKKIWTSNG 75 (776)
T ss_dssp BSSBSSTTCCCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHSTT--------STTHHHHHHHHHHHHHTC
T ss_pred ccccccCCCcccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhccC--------cchhHHHHHHHHHHHhCC
Confidence 3456666667889999865421 11234678999999999999887642 2221222234333221 2
Q ss_pred hcCCCChhhhcc---cceecCC--CCCCCc
Q 032467 77 ASTPMPAMYQNK---MVWILCN--DCGANS 101 (140)
Q Consensus 77 ~~~~~~~~~~~~---~~~i~C~--~C~~~~ 101 (140)
...+....|... -.++.|. +|++..
T Consensus 76 ~~~~~~~~~~~~~~l~~~~~c~~~~c~~~~ 105 (776)
T 4gut_A 76 KTEPSPKAFMADQQLPYWVQCTKPECRKWR 105 (776)
T ss_dssp CSCCCHHHHHHHHTSCCEEECCCTTTCCEE
T ss_pred ccchhHHHHHHhccCcHhhhcCcccccchh
Confidence 223333322221 2588899 998754
No 197
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=23.40 E-value=38 Score=20.88 Aligned_cols=25 Identities=24% Similarity=0.735 Sum_probs=16.4
Q ss_pred ceecCCCCCCCcccceeeeccccccCCC
Q 032467 90 VWILCNDCGANSHVQFHVIAHKCLSCKS 117 (140)
Q Consensus 90 ~~i~C~~C~~~~~~~~~~~~~~C~~C~~ 117 (140)
..+.|+.|+.. ...+.+.+|..|..
T Consensus 20 ~~~~Cd~C~~~---pI~G~RykC~~C~d 44 (82)
T 2fc7_A 20 VGFKCDNCGIE---PIQGVRWHCQDCPP 44 (82)
T ss_dssp SSCCCSSSCCS---SEESCEEEESSSCS
T ss_pred CcCCCCCCCCC---cceeceEECCcCCC
Confidence 46789999863 22345667777766
No 198
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.27 E-value=70 Score=19.20 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=27.4
Q ss_pred cccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCCc
Q 032467 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~~ 63 (140)
....|..|.+.+.. ..+..-|..||..| ++|-.|++.+.
T Consensus 24 ~~~~C~~C~~~I~~----~~~~a~~~~~H~~C---------F~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVG----AVVKARDKYRHPEC---------FVCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCS----CCEESSSCEECTTT---------CCCSSSCCCTT
T ss_pred cCCCcccCCCEecc----cEEEECCceECccC---------CEecCCCCCCC
Confidence 34579999987542 23445678888877 56889998863
No 199
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=23.11 E-value=35 Score=21.89 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=18.0
Q ss_pred ceecCCCCCCCcccceeeeccccccCCCcc
Q 032467 90 VWILCNDCGANSHVQFHVIAHKCLSCKSYN 119 (140)
Q Consensus 90 ~~i~C~~C~~~~~~~~~~~~~~C~~C~~~~ 119 (140)
..+.|+.|+... ....+.+|..|..|.
T Consensus 30 ~gv~Cd~C~~~p---I~G~RykC~~C~d~D 56 (98)
T 2dip_A 30 LGIPCNNCKQFP---IEGKCYKCTECIEYH 56 (98)
T ss_dssp CCCCCSSSCCSS---CCSCEEEESSSSSCE
T ss_pred CCCCCcCCCCCC---cccCeEECCCCCCcc
Confidence 348899998632 224566787776663
No 200
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=22.19 E-value=9.2 Score=22.68 Aligned_cols=45 Identities=24% Similarity=0.533 Sum_probs=24.7
Q ss_pred ccccccccccccccCCccEEe---cCCCcccHHHHHhhhc---c----ccCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVL---RCGHTIHLECLKEMEK---H----YRYTCPVCSK 60 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l---~CgH~Fc~~Cl~~~~~---~----~~~~CP~CR~ 60 (140)
...| ||.... .....+.- .|.--||..|+.-... . ..+.||.||.
T Consensus 10 ~v~C-~C~~~~--~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTM--VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCS--CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCc--CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 4556 796532 12222222 2777899999742111 0 2478999974
No 201
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=22.08 E-value=6.9 Score=21.94 Aligned_cols=27 Identities=30% Similarity=0.642 Sum_probs=18.7
Q ss_pred cCCCcccHHHHHhhhc--cccCCCCCCCC
Q 032467 34 RCGHTIHLECLKEMEK--HYRYTCPVCSK 60 (140)
Q Consensus 34 ~CgH~Fc~~Cl~~~~~--~~~~~CP~CR~ 60 (140)
.|.--||..|+.--.. ...+.||.|+.
T Consensus 23 ~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 23 ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred CCCccccccccCCCcccCCCcEECcCCCC
Confidence 6788899999864332 24578888864
No 202
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.03 E-value=56 Score=13.88 Aligned_cols=13 Identities=23% Similarity=0.856 Sum_probs=9.6
Q ss_pred CCCCCCCCCCchh
Q 032467 53 YTCPVCSKSLWDM 65 (140)
Q Consensus 53 ~~CP~CR~~~~~~ 65 (140)
+.|+.|.+.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 1ard_A 3 FVCEVCTRAFARQ 15 (29)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eECCCCCcccCCH
Confidence 5689998887553
No 203
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.60 E-value=80 Score=17.89 Aligned_cols=39 Identities=23% Similarity=0.579 Sum_probs=26.1
Q ss_pred ccccccccccccccCCccEEecCCCcccHHHHHhhhccccCCCCCCCCCC
Q 032467 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (140)
Q Consensus 13 ~~~C~IC~e~l~~~~~~~~~l~CgH~Fc~~Cl~~~~~~~~~~CP~CR~~~ 62 (140)
...|..|.+.+... ...+..=|..||..| ++|-.|++.+
T Consensus 5 ~~~C~~C~~~I~~~--~~~~~a~~~~~H~~C---------F~C~~C~~~L 43 (72)
T 1x61_A 5 SSGCGGCGEDVVGD--GAGVVALDRVFHVGC---------FVCSTCRAQL 43 (72)
T ss_dssp CCCCSSSCSCCCSS--SCCEECSSSEECTTT---------CBCSSSCCBC
T ss_pred CCCCccCCCccCCC--ceEEEECCCeEcccC---------CcccccCCcC
Confidence 45788898765421 223445578888776 4688998886
No 204
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.31 E-value=51 Score=18.06 Aligned_cols=13 Identities=46% Similarity=1.178 Sum_probs=9.5
Q ss_pred cCCCCCCCCCCch
Q 032467 52 RYTCPVCSKSLWD 64 (140)
Q Consensus 52 ~~~CP~CR~~~~~ 64 (140)
.+.|+.|.+.+..
T Consensus 14 ~~~C~~C~k~F~~ 26 (62)
T 1vd4_A 14 SFKCPVCSSTFTD 26 (62)
T ss_dssp EEECSSSCCEEEH
T ss_pred CccCCCCCchhcc
Confidence 3679999888744
No 205
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.08 E-value=60 Score=15.07 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=10.3
Q ss_pred cCCCCCCCCCCch
Q 032467 52 RYTCPVCSKSLWD 64 (140)
Q Consensus 52 ~~~CP~CR~~~~~ 64 (140)
.+.|+.|.+.+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4779999988755
No 206
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.99 E-value=48 Score=18.51 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=8.3
Q ss_pred cCCCCCCCCCCch
Q 032467 52 RYTCPVCSKSLWD 64 (140)
Q Consensus 52 ~~~CP~CR~~~~~ 64 (140)
.+.|++|.+.+..
T Consensus 14 ~~~C~~C~k~f~~ 26 (72)
T 1x6e_A 14 PYGCVECGKAFSR 26 (72)
T ss_dssp CEECSSSCCEESS
T ss_pred CccCCCCCCccCC
Confidence 3567777776644
No 207
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.87 E-value=63 Score=13.58 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=9.5
Q ss_pred CCCCCCCCCCchh
Q 032467 53 YTCPVCSKSLWDM 65 (140)
Q Consensus 53 ~~CP~CR~~~~~~ 65 (140)
+.|+.|.+.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 5688998887543
No 208
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.63 E-value=8.7 Score=23.43 Aligned_cols=46 Identities=20% Similarity=0.525 Sum_probs=28.5
Q ss_pred cccccccccccccccCCccEEe----cCCCcccHHHHHhhhc--------cccCCCCCCCCC
Q 032467 12 MHHNCPICFEFIFDTMKDITVL----RCGHTIHLECLKEMEK--------HYRYTCPVCSKS 61 (140)
Q Consensus 12 ~~~~C~IC~e~l~~~~~~~~~l----~CgH~Fc~~Cl~~~~~--------~~~~~CP~CR~~ 61 (140)
....| ||.... ... .++- .|..-||..|+.--.. ...+.||.|+..
T Consensus 15 ~~~~C-iC~~~~--~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSL--ETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCC--CCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcC--CCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 35567 888641 122 2222 5888999999864321 136889999754
No 209
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.50 E-value=64 Score=13.71 Aligned_cols=14 Identities=36% Similarity=0.619 Sum_probs=10.0
Q ss_pred CCCCCCCCCCchhh
Q 032467 53 YTCPVCSKSLWDMS 66 (140)
Q Consensus 53 ~~CP~CR~~~~~~~ 66 (140)
+.|+.|.+.+....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (30)
T 1klr_A 3 YQCQYCEFRSADSS 16 (30)
T ss_dssp CCCSSSSCCCSCSH
T ss_pred ccCCCCCCccCCHH
Confidence 57999988875533
Done!