BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032468
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZ6|O Chain O, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 151
Score = 245 bits (626), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/140 (85%), Positives = 128/140 (91%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMHSRGKGIS+SA+PYKRTPPSW+K ++ DVE+ I K AKKG PSQIGV+LRD HGI
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61 PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 121 RIHRLARYYKKTKKLPPVWK 140
RIHRLARYYK+TKKLPP WK
Sbjct: 121 RIHRLARYYKRTKKLPPTWK 140
>pdb|3IZB|O Chain O, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 151
Score = 222 bits (566), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 100/140 (71%), Positives = 123/140 (87%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMHS GKGIS+SA+PY R P+W K+SS+ V + I K+A+KGLTPSQIGV+LRD+HG+
Sbjct: 1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Q + +TG+KI+RILK++GLAPEIPEDLY+LIKKAV++RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 TQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIES 120
Query: 121 RIHRLARYYKKTKKLPPVWK 140
RIHRLARYY+ LPP WK
Sbjct: 121 RIHRLARYYRTVAVLPPNWK 140
>pdb|3ZEY|G Chain G, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 151
Score = 216 bits (551), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/140 (74%), Positives = 120/140 (85%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
M RMH G G +ASALPY+RTPP+WLK SS+DV D +CK AKKGL+PS+IG+ LRDS GI
Sbjct: 1 MVRMHGNGHGKAASALPYRRTPPTWLKSSSRDVIDAVCKLAKKGLSPSRIGMQLRDSMGI 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQVK+VTG KILRILK G+APEIPEDLY LIK+A +RKHLERN KDKD+KFRLILVES
Sbjct: 61 AQVKNVTGRKILRILKHKGMAPEIPEDLYCLIKRATQMRKHLERNTKDKDTKFRLILVES 120
Query: 121 RIHRLARYYKKTKKLPPVWK 140
RIHRLARYY++ K+LPP WK
Sbjct: 121 RIHRLARYYRRVKQLPPTWK 140
>pdb|2XZM|O Chain O, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|O Chain O, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 153
Score = 200 bits (509), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/142 (70%), Positives = 115/142 (80%), Gaps = 2/142 (1%)
Query: 1 MGRMH--SRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH 58
MGRM +GKGIS SALP+KR P WL ++ V D K AKKGLTPSQIGVILRD H
Sbjct: 1 MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQH 60
Query: 59 GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILV 118
GI QV+ +TG KILRILK +G AP++PEDLY LIKKA++IRKHLE+NRKDKDSK+RLILV
Sbjct: 61 GIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILV 120
Query: 119 ESRIHRLARYYKKTKKLPPVWK 140
ESRIHRL+RYYK +KLPP WK
Sbjct: 121 ESRIHRLSRYYKLNQKLPPKWK 142
>pdb|1YSH|E Chain E, Localization And Dynamic Behavior Of Ribosomal Protein
L30e
Length = 84
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/76 (96%), Positives = 74/76 (97%)
Query: 65 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHR 124
SVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHR
Sbjct: 1 SVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHR 60
Query: 125 LARYYKKTKKLPPVWK 140
LARYYK+TKKLPP WK
Sbjct: 61 LARYYKRTKKLPPTWK 76
>pdb|3JYV|O Chain O, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 84
Score = 129 bits (323), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 70/75 (93%)
Query: 66 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRL 125
+TG+KI+RILK++GLAPEIPEDLY+LIKKAV++RKHLERNRKDKD+KFRLIL+ESRIHRL
Sbjct: 1 ITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRL 60
Query: 126 ARYYKKTKKLPPVWK 140
ARYY+ LPP WK
Sbjct: 61 ARYYRTVAVLPPNWK 75
>pdb|3J20|Q Chain Q, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 158
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
M RMH+R +G S S P + PP W++ + +++E+ + K K+G + + IG ILRD +GI
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 61 AQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKF 113
VK I RIL+ HGLAPEIPEDL LI++AV +RKHLE++ KD S
Sbjct: 61 PSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMR 120
Query: 114 RLILVESRIHRLARYYKKTKKLPPVWK 140
L L+ES+I RL +YYK+ KLP W+
Sbjct: 121 GLQLIESKIRRLVKYYKRKGKLPKNWR 147
>pdb|1S1H|O Chain O, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 65
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 65/65 (100%)
Query: 66 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRL 125
+TG+KI+RILK++GLAPEIPEDLY+LIKKAV++RKHLERNRKDKD+KFRLIL+ESRIHRL
Sbjct: 1 ITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRL 60
Query: 126 ARYYK 130
ARYY+
Sbjct: 61 ARYYR 65
>pdb|1ZED|A Chain A, Alkaline Phosphatase From Human Placenta In Complex With
P- Nitrophenyl-Phosphonate
Length = 484
Score = 29.6 bits (65), Expect = 0.63, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 41 AKKGLTPSQIG-----VILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDL----YHL 91
A K L P+Q + L D G++ +VT ++IL+ K L PEIP + Y
Sbjct: 22 AAKKLQPAQTAAKNLIIFLGDGMGVS---TVTAARILKGQKKDKLGPEIPLAMDRFPYVA 78
Query: 92 IKKAVAIRKHL 102
+ K + KH+
Sbjct: 79 LSKTYNVDKHV 89
>pdb|3MK0|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK1|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK2|A Chain A, Placental Alkaline Phosphatase Complexed With Phe
pdb|2GLQ|A Chain A, X-Ray Structure Of Human Alkaline Phosphatase In Complex
With Strontium
pdb|1ZEF|A Chain A, Structure Of Alkaline Phosphatase From Human Placenta In
Complex With Its Uncompetitive Inhibitor L-Phe
pdb|1ZEB|A Chain A, X-ray Structure Of Alkaline Phosphatase From Human
Placenta In Complex With 5'-amp
Length = 484
Score = 29.6 bits (65), Expect = 0.63, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 41 AKKGLTPSQIG-----VILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDL----YHL 91
A K L P+Q + L D G++ +VT ++IL+ K L PEIP + Y
Sbjct: 22 AAKKLQPAQTAAKNLIIFLGDGMGVS---TVTAARILKGQKKDKLGPEIPLAMDRFPYVA 78
Query: 92 IKKAVAIRKHL 102
+ K + KH+
Sbjct: 79 LSKTYNVDKHV 89
>pdb|1EW2|A Chain A, Crystal Structure Of A Human Phosphatase
Length = 513
Score = 29.3 bits (64), Expect = 0.74, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 41 AKKGLTPSQIG-----VILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDL----YHL 91
A K L P+Q + L D G++ +VT ++IL+ K L PEIP + Y
Sbjct: 22 AAKKLQPAQTAAKNLIIFLGDGMGVS---TVTAARILKGQKKDKLGPEIPLAMDRFPYVA 78
Query: 92 IKKAVAIRKHL 102
+ K + KH+
Sbjct: 79 LSKTYNVDKHV 89
>pdb|3T91|A Chain A, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis
pdb|3T91|B Chain B, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis
pdb|3T9Q|A Chain A, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis (Mn Presoaked)
pdb|3T9Q|B Chain B, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis (Mn Presoaked)
Length = 242
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 24 SWLKISSQDVEDNICKFAKKGLTPSQI 50
S L +S D++D CKF K G TPS I
Sbjct: 93 STLDLSIIDLQDASCKFLKVGSTPSFI 119
>pdb|3BRJ|A Chain A, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|B Chain B, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|C Chain C, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|D Chain D, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
Length = 175
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 48 SQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 107
S +G +L+DS + + S L++L G+ +P+D+YH I+ + ++ HL +
Sbjct: 55 SVVGPLLQDSGPLGDL-----SVRLKLLFGLGV---LPDDIYHDIEDIIKLKNHLNSDAS 106
Query: 108 D 108
D
Sbjct: 107 D 107
>pdb|2E67|A Chain A, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|B Chain B, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|C Chain C, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|D Chain D, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|E Chain E, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|F Chain F, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
Length = 264
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 25 WLKISSQDVEDNI---CKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81
W K +++VE + + A K +P+ + D+H A ++ LR+ +A+ L
Sbjct: 96 WRKARAEEVERELKAQIQAAAKLFSPTHL-----DAHQGAVLRPDLAEVYLRLAEAYRLV 150
Query: 82 PEIPEDL 88
P +PE L
Sbjct: 151 PLVPESL 157
>pdb|1WU2|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikoshii Ot3
pdb|1WU2|B Chain B, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikoshii Ot3
Length = 396
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 47 PSQIG----VILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPED 87
PSQ+G + + +GIA+V GS IL L A EIPED
Sbjct: 337 PSQLGRYEFIKIYYENGIARVIKKKGSGILSSLLASNAYLEIPED 381
>pdb|4G1T|A Chain A, Crystal Structure Of Interferon-Stimulated Gene 54
pdb|4G1T|B Chain B, Crystal Structure Of Interferon-Stimulated Gene 54
Length = 472
Score = 25.8 bits (55), Expect = 8.2, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 88 LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKK---------TKKLPPV 138
L LI AVA HL++ + D+ FR+ + + +H LA Y++ +K+L PV
Sbjct: 312 LLELIGHAVA---HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368
Query: 139 WK 140
K
Sbjct: 369 AK 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,026,108
Number of Sequences: 62578
Number of extensions: 144312
Number of successful extensions: 489
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 23
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)