Query 032468
Match_columns 140
No_of_seqs 124 out of 248
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 23:51:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_N S27A, YS15, 40S ribosom 100.0 5E-85 1.7E-89 508.1 14.4 140 1-140 1-140 (151)
2 2xzm_O RPS13E; ribosome, trans 100.0 5.2E-85 1.8E-89 508.8 14.3 140 1-140 1-142 (153)
3 3j20_Q 30S ribosomal protein S 100.0 1.6E-71 5.6E-76 434.9 13.5 140 1-140 1-147 (158)
4 4a5u_B 30S ribosomal protein S 98.2 1.3E-06 4.5E-11 62.3 4.4 46 88-133 28-73 (88)
5 3ulw_A 30S ribosomal protein S 98.2 8.2E-07 2.8E-11 63.9 3.1 46 88-133 32-77 (93)
6 1a32_A Ribosomal protein S15; 97.9 5.7E-05 1.9E-09 53.8 8.3 63 71-133 7-73 (88)
7 2vqe_O 30S ribosomal protein S 97.8 5.6E-05 1.9E-09 53.9 6.8 63 71-133 8-74 (89)
8 3r8n_O 30S ribosomal protein S 97.7 4.9E-05 1.7E-09 54.2 4.9 46 88-133 28-73 (88)
9 3bbn_O Ribosomal protein S15; 97.4 4.1E-05 1.4E-09 54.9 1.7 47 87-133 25-71 (90)
10 1ynp_A Oxidoreductase, AKR11C1 82.6 2.1 7.2E-05 34.4 5.5 71 23-95 233-306 (317)
11 1jko_C HIN recombinase, DNA-in 81.0 1 3.5E-05 25.4 2.3 46 28-84 6-51 (52)
12 3m66_A Mterf3, mterf domain-co 80.9 0.92 3.1E-05 35.4 2.7 70 21-93 24-98 (270)
13 3bzy_B ESCU; auto cleavage pro 79.6 3.1 0.00011 28.6 4.7 59 21-96 16-75 (83)
14 3c01_E Surface presentation of 78.3 7.3 0.00025 27.6 6.5 68 21-105 16-84 (98)
15 3t7y_A YOP proteins translocat 78.2 3.4 0.00012 29.3 4.7 60 21-97 31-91 (97)
16 2l8n_A Transcriptional repress 77.8 1.2 4.3E-05 28.9 2.2 44 37-83 12-56 (67)
17 3r88_A Anthranilate phosphorib 75.7 1.3 4.6E-05 37.5 2.4 50 5-54 6-65 (377)
18 4dfk_A DNA polymerase I, therm 74.9 3.1 0.00011 36.8 4.6 35 30-64 175-212 (540)
19 1pul_A Hypothetical protein C3 74.3 3 0.0001 31.0 3.7 46 21-81 12-57 (125)
20 2vt1_B Surface presentation of 74.2 3.4 0.00012 29.2 3.8 65 21-102 16-81 (93)
21 2jlj_A YSCU, YOP proteins tran 72.2 5.2 0.00018 30.3 4.6 67 21-104 69-136 (144)
22 4fp9_B Mterf domain-containing 71.4 7.2 0.00025 32.5 5.7 61 29-95 42-102 (335)
23 2dmp_A Zinc fingers and homeob 69.3 11 0.00037 25.3 5.3 51 10-60 1-52 (89)
24 3hot_A Transposable element ma 68.9 4.2 0.00015 31.7 3.6 37 25-61 3-39 (345)
25 2d8c_A Phosphatidylcholine:cer 68.1 12 0.00041 26.1 5.5 73 10-99 1-81 (97)
26 3bzs_A ESCU; auto cleavage pro 67.9 6.7 0.00023 29.4 4.4 60 21-97 70-130 (137)
27 1u78_A TC3 transposase, transp 67.4 9.7 0.00033 25.6 4.8 45 27-80 60-105 (141)
28 2kd1_A DNA integration/recombi 64.4 5.5 0.00019 25.7 3.0 31 25-55 48-78 (118)
29 2kkp_A Phage integrase; SAM-li 64.4 6.4 0.00022 25.1 3.3 30 25-54 50-79 (117)
30 1uxc_A FRUR (1-57), fructose r 64.3 5.7 0.00019 25.5 3.0 42 43-84 10-51 (65)
31 2key_A Putative phage integras 62.2 8.9 0.00031 24.5 3.7 52 24-86 48-100 (112)
32 2jli_A YSCU, YOP proteins tran 62.1 9.4 0.00032 28.1 4.2 58 21-95 60-118 (123)
33 3nrw_A Phage integrase/site-sp 61.1 7.8 0.00027 25.7 3.3 53 24-87 50-102 (117)
34 2kfn_A Klenow fragment of DNA 59.7 9 0.00031 33.8 4.3 56 30-88 240-304 (605)
35 1tdp_A Carnobacteriocin B2 imm 59.2 5.9 0.0002 29.2 2.6 52 86-137 6-71 (111)
36 3eau_A Voltage-gated potassium 56.9 14 0.00048 29.3 4.6 62 33-96 254-321 (327)
37 3pv8_A DNA polymerase I; DNA p 56.8 13 0.00046 33.1 5.0 60 30-89 227-291 (592)
38 2i4r_A V-type ATP synthase sub 56.2 2.7 9.3E-05 29.7 0.3 28 27-58 35-62 (102)
39 3gdw_A Sigma-54 interaction do 55.9 25 0.00085 25.6 5.5 74 27-102 41-129 (139)
40 4dyq_A Gene 1 protein; GP1, oc 55.7 25 0.00087 25.1 5.5 57 27-100 12-68 (140)
41 1zbm_A Hypothetical protein AF 55.7 3.1 0.00011 31.2 0.6 22 70-91 259-280 (280)
42 3n2t_A Putative oxidoreductase 54.7 24 0.00083 28.5 5.8 63 33-97 265-330 (348)
43 1tc3_C Protein (TC3 transposas 54.3 10 0.00035 20.6 2.5 26 28-54 6-31 (51)
44 2vz4_A Tipal, HTH-type transcr 52.8 22 0.00076 24.1 4.6 41 16-56 28-70 (108)
45 3b1s_B Flagellar biosynthetic 57.4 3 0.0001 29.0 0.0 60 21-97 16-76 (87)
46 3v0s_A Perakine reductase; AKR 52.0 16 0.00056 29.3 4.4 62 33-96 244-309 (337)
47 3neh_A Renal dipeptidase famil 51.6 4.7 0.00016 33.7 1.1 45 21-80 269-313 (318)
48 2zze_A Alanyl-tRNA synthetase; 51.3 16 0.00056 34.1 4.7 56 33-94 434-491 (752)
49 2ka4_B P113, signal transducer 49.9 3.8 0.00013 27.1 0.2 11 81-91 7-17 (57)
50 2cob_A LCOR protein; MLR2, KIA 48.9 24 0.00082 23.9 4.1 39 23-65 6-47 (70)
51 3g2b_A Coenzyme PQQ synthesis 48.3 10 0.00035 26.2 2.3 52 28-80 39-92 (95)
52 3ly0_A Dipeptidase AC. metallo 46.7 17 0.00057 31.0 3.8 43 22-78 312-354 (364)
53 1lqa_A TAS protein; TIM barrel 45.8 42 0.0015 26.5 5.8 62 32-95 272-337 (346)
54 3eus_A DNA-binding protein; st 45.4 27 0.00093 22.2 3.9 31 44-80 38-68 (86)
55 3n6q_A YGHZ aldo-keto reductas 45.3 55 0.0019 26.1 6.5 64 32-96 265-332 (346)
56 3lfu_A DNA helicase II; SF1 he 43.9 13 0.00045 31.5 2.7 27 31-57 331-357 (647)
57 2kw0_A CCMH protein; oxidoredu 43.8 14 0.00047 26.1 2.3 30 30-59 42-71 (90)
58 3b0z_B Flagellar biosynthetic 49.6 4.9 0.00017 29.3 0.0 66 22-104 17-83 (114)
59 2cpg_A REPA protein, transcrip 43.3 12 0.0004 21.4 1.7 22 30-51 10-32 (45)
60 2gsv_A Hypothetical protein YV 43.2 12 0.00042 25.9 1.9 26 96-132 12-37 (80)
61 2xvc_A ESCRT-III, SSO0910; cel 42.8 16 0.00056 24.2 2.4 20 26-45 35-54 (59)
62 2v7f_A RPS19, RPS19E SSU ribos 42.6 22 0.00076 26.5 3.5 60 20-82 26-112 (150)
63 1pyf_A IOLS protein; beta-alph 42.3 36 0.0012 26.8 4.8 60 34-95 245-308 (312)
64 3plo_X DNA-invertase; resolvas 41.8 5.5 0.00019 29.5 0.0 26 29-55 144-169 (193)
65 1pdo_A Mannose permease; phosp 41.3 25 0.00086 24.8 3.5 50 25-76 36-99 (135)
66 2hl7_A Cytochrome C-type bioge 41.1 16 0.00055 25.2 2.3 30 30-59 45-74 (84)
67 1gve_A Aflatoxin B1 aldehyde r 40.9 61 0.0021 25.6 6.0 65 33-97 240-316 (327)
68 2ahq_A Sigma-54, RNA polymeras 40.4 29 0.00098 23.5 3.5 50 27-81 15-69 (76)
69 1r8d_A Transcription activator 39.6 41 0.0014 22.7 4.3 41 16-56 29-71 (109)
70 3lut_A Voltage-gated potassium 39.6 23 0.00078 28.8 3.4 62 33-96 288-355 (367)
71 3id7_A Dipeptidase; streptomyc 39.5 29 0.001 29.8 4.2 44 21-78 326-369 (400)
72 3gx1_A LIN1832 protein; APC633 39.2 67 0.0023 22.8 5.5 69 27-98 41-122 (130)
73 3m66_A Mterf3, mterf domain-co 38.4 58 0.002 25.1 5.4 36 22-57 65-100 (270)
74 1wdd_S Ribulose bisphosphate c 38.2 18 0.00062 27.0 2.4 22 27-48 20-41 (128)
75 1u78_A TC3 transposase, transp 37.6 88 0.003 20.7 5.9 26 28-54 7-32 (141)
76 2r0q_C Putative transposon TN5 37.4 35 0.0012 25.3 3.9 39 32-80 163-201 (209)
77 1rbl_M Ribulose 1,5 bisphospha 37.2 17 0.00058 26.3 2.0 22 27-48 19-40 (109)
78 1svd_M Ribulose bisphosphate c 37.0 20 0.00067 26.0 2.4 22 27-48 21-42 (110)
79 1uaa_A REP helicase, protein ( 37.0 48 0.0016 28.7 5.2 45 32-84 326-371 (673)
80 4fp9_B Mterf domain-containing 36.7 54 0.0019 27.2 5.3 64 29-95 74-137 (335)
81 1q06_A Transcriptional regulat 36.6 30 0.001 24.6 3.3 40 17-56 28-69 (135)
82 1vz0_A PARB, chromosome partit 35.8 66 0.0022 24.9 5.4 21 70-94 150-170 (230)
83 3erp_A Putative oxidoreductase 35.7 44 0.0015 27.0 4.5 64 32-96 282-349 (353)
84 2hue_C Histone H4; mini beta s 35.6 36 0.0012 22.8 3.4 35 53-94 3-38 (84)
85 3fia_A Intersectin-1; EH 1 dom 35.5 1.2E+02 0.0041 21.7 7.1 75 1-95 1-75 (121)
86 2pju_A Propionate catabolism o 34.9 54 0.0018 25.6 4.8 58 28-102 138-198 (225)
87 3zxw_B Ribulose bisphosphate c 34.7 20 0.00067 26.4 2.0 22 27-48 18-39 (118)
88 2oxo_A Integrase; DNA-binding 34.7 38 0.0013 20.3 3.1 49 26-86 44-92 (103)
89 1ur3_M Hypothetical oxidoreduc 34.5 78 0.0027 25.2 5.8 64 31-96 245-313 (319)
90 1yfs_A Alanyl-tRNA synthetase; 34.4 59 0.002 28.9 5.4 55 33-94 364-420 (465)
91 1gk8_I Ribulose bisphosphate c 34.1 23 0.00077 26.9 2.4 22 27-48 20-41 (140)
92 1xo0_A Recombinase CRE; CRE re 34.1 39 0.0013 24.9 3.6 32 24-55 43-74 (324)
93 3kjx_A Transcriptional regulat 33.9 28 0.00096 26.7 2.9 37 43-82 20-56 (344)
94 1pdn_C Protein (PRD paired); p 33.8 28 0.00094 22.6 2.5 26 28-54 18-43 (128)
95 3bed_A PTS system, IIA compone 33.8 55 0.0019 23.3 4.3 67 27-98 42-121 (142)
96 1taf_B TFIID TBP associated fa 33.7 70 0.0024 21.2 4.5 34 69-103 10-55 (70)
97 2nsa_A Trigger factor, TF; cha 33.4 25 0.00086 25.3 2.4 25 26-50 107-132 (170)
98 2a6c_A Helix-turn-helix motif; 32.5 53 0.0018 20.5 3.7 31 24-54 10-41 (83)
99 2ztg_A Alanyl-tRNA synthetase; 32.3 53 0.0018 30.6 4.9 43 46-94 440-482 (739)
100 2x48_A CAG38821; archeal virus 32.3 42 0.0014 19.3 3.0 24 30-54 18-41 (55)
101 2jml_A DNA binding domain/tran 32.1 27 0.00093 22.4 2.2 34 24-57 41-77 (81)
102 3rgc_A Possible periplasmic pr 31.9 89 0.0031 23.6 5.5 36 67-105 71-106 (252)
103 2jpc_A SSRB; DNA binding prote 31.6 31 0.0011 20.2 2.3 21 34-54 3-23 (61)
104 2elc_A Trp D, anthranilate pho 31.4 33 0.0011 28.4 3.1 29 27-55 12-40 (329)
105 3aon_B V-type sodium ATPase su 31.3 11 0.00036 27.1 0.1 59 27-98 27-100 (115)
106 1u69_A Hypothetical protein; s 31.1 21 0.00071 26.7 1.7 33 29-62 86-118 (163)
107 2odi_A R.BCNI; endonuclease-DN 31.0 37 0.0013 27.5 3.3 34 28-61 4-47 (238)
108 2kj8_A Putative prophage CPS-5 30.7 43 0.0015 21.7 3.1 49 26-86 48-96 (118)
109 3tl4_X Glutaminyl-tRNA synthet 30.5 36 0.0012 26.4 3.1 50 25-76 114-171 (187)
110 3cz6_A DNA-binding protein RAP 30.3 39 0.0013 26.4 3.2 41 22-62 34-78 (168)
111 2q5c_A NTRC family transcripti 30.3 71 0.0024 24.0 4.6 40 29-68 127-169 (196)
112 3v7n_A Threonine synthase; ssg 30.2 26 0.00089 30.7 2.4 70 26-95 385-464 (487)
113 2rin_A Putative glycine betain 30.1 58 0.002 25.6 4.2 50 28-77 232-287 (298)
114 1bwv_S Rubisco, protein (ribul 29.8 29 0.001 26.2 2.4 22 27-48 13-34 (138)
115 3b7h_A Prophage LP1 protein 11 29.8 62 0.0021 19.3 3.5 22 32-53 7-29 (78)
116 1j93_A UROD, uroporphyrinogen 29.6 52 0.0018 26.3 3.9 34 24-61 299-333 (353)
117 1o17_A Anthranilate PRT, anthr 29.6 36 0.0012 28.3 3.1 29 27-55 15-43 (345)
118 2oyy_A Hexameric cytochrome; a 29.3 18 0.0006 25.1 0.9 37 23-59 7-47 (76)
119 3ulq_B Transcriptional regulat 29.1 32 0.0011 22.8 2.3 53 21-81 23-75 (90)
120 2k4b_A Transcriptional regulat 29.1 25 0.00085 24.1 1.7 46 32-82 39-84 (99)
121 4hkm_A Anthranilate phosphorib 29.0 38 0.0013 28.0 3.1 29 27-55 18-46 (346)
122 1vqu_A Anthranilate phosphorib 28.8 38 0.0013 28.6 3.1 29 27-55 39-67 (374)
123 1m5y_A SurviVal protein, survi 28.7 1.7E+02 0.0057 23.3 6.8 30 67-99 90-119 (408)
124 2czl_A Hypothetical protein TT 28.6 8.5 0.00029 28.6 -0.8 63 25-89 203-271 (272)
125 3mva_O Transcription terminati 28.6 32 0.0011 27.7 2.6 58 21-81 74-136 (343)
126 1itu_A Renal dipeptidase; glyc 28.2 61 0.0021 27.4 4.3 42 22-77 295-336 (369)
127 2kj5_A Phage integrase; GFT PS 28.1 46 0.0016 21.1 2.8 28 26-54 49-76 (116)
128 2k9i_A Plasmid PRN1, complete 28.1 30 0.001 20.3 1.7 22 30-51 17-39 (55)
129 1p6r_A Penicillinase repressor 28.1 22 0.00075 22.4 1.2 38 42-82 21-58 (82)
130 2kiw_A INT protein; alpha, str 27.8 53 0.0018 20.6 3.1 28 26-54 42-69 (111)
131 2fu4_A Ferric uptake regulatio 27.6 63 0.0022 20.1 3.4 40 43-84 32-71 (83)
132 1khd_A Anthranilate phosphorib 27.3 39 0.0013 28.1 2.9 29 27-55 25-53 (345)
133 2kvc_A Putative uncharacterize 27.3 51 0.0017 23.8 3.1 30 27-56 38-68 (103)
134 2hsg_A Glucose-resistance amyl 27.2 42 0.0014 25.5 2.9 37 43-82 12-48 (332)
135 4f0h_B Ribulose bisphosphate c 26.9 36 0.0012 25.7 2.4 22 27-48 13-34 (138)
136 2gpe_A Bifunctional protein PU 26.7 36 0.0012 20.1 2.0 21 30-50 11-32 (52)
137 1k78_A Paired box protein PAX5 26.7 1.5E+02 0.0052 20.1 6.6 49 27-80 90-144 (149)
138 1vg5_A RSGI RUH-014, rhomboid 26.7 56 0.0019 21.8 3.1 32 28-59 24-55 (73)
139 4a8e_A XER A, probable tyrosin 26.5 52 0.0018 24.0 3.2 30 25-54 44-73 (292)
140 3hh1_A Tetrapyrrole methylase 26.5 66 0.0023 21.9 3.6 48 29-82 64-111 (117)
141 3bd1_A CRO protein; transcript 26.4 1.1E+02 0.0037 18.7 4.3 34 39-79 16-50 (79)
142 2e5z_A SFRS8 protein, splicing 26.4 53 0.0018 22.9 3.0 21 21-41 12-32 (90)
143 1k78_A Paired box protein PAX5 26.3 1.6E+02 0.0053 20.1 6.6 24 31-54 35-58 (149)
144 1bxn_I Rubisco, protein (ribul 26.2 33 0.0011 25.9 2.0 22 27-48 13-34 (139)
145 2pjw_V Vacuolar protein sortin 26.0 1.5E+02 0.0051 20.6 5.3 48 84-131 31-79 (91)
146 3ff5_A PEX14P, peroxisomal bio 26.0 48 0.0016 21.3 2.5 24 33-56 30-53 (54)
147 3in6_A FMN-binding protein; st 25.9 11 0.00038 28.6 -0.6 42 24-67 9-50 (148)
148 2bp1_A Aflatoxin B1 aldehyde r 25.8 1.1E+02 0.0037 24.7 5.3 63 33-96 273-348 (360)
149 3ov9_A Nucleoprotein; orthogon 25.8 1.4E+02 0.0049 24.4 6.0 82 28-136 16-97 (245)
150 1s4d_A Uroporphyrin-III C-meth 25.7 47 0.0016 26.1 3.0 26 21-46 69-94 (280)
151 3uj3_X DNA-invertase; helix-tu 25.3 15 0.00051 27.0 0.0 40 29-79 144-183 (193)
152 3gpv_A Transcriptional regulat 25.3 47 0.0016 24.0 2.7 39 17-55 44-84 (148)
153 1y7y_A C.AHDI; helix-turn-heli 24.9 80 0.0027 18.5 3.4 23 32-54 13-36 (74)
154 2ctd_A Zinc finger protein 512 24.5 89 0.0031 20.2 3.8 28 10-37 1-28 (96)
155 3mva_O Transcription terminati 24.2 64 0.0022 26.0 3.6 67 28-97 46-112 (343)
156 2kkv_A Integrase; protein stru 24.2 44 0.0015 21.6 2.2 28 25-53 48-75 (121)
157 2dsj_A Pyrimidine-nucleoside ( 24.1 51 0.0017 28.6 3.1 29 27-55 15-43 (423)
158 2lky_A Uncharacterized protein 24.1 59 0.002 23.7 3.0 27 27-53 40-67 (112)
159 2khq_A Integrase; all-alpha, s 23.9 52 0.0018 20.5 2.4 29 25-54 44-72 (110)
160 1rr7_A Middle operon regulator 23.8 88 0.003 22.4 3.9 85 35-131 30-118 (129)
161 3k3w_A Penicillin G acylase; h 23.8 15 0.00051 28.7 -0.3 19 52-70 6-24 (196)
162 2ay0_A Bifunctional PUTA prote 23.7 45 0.0015 20.9 2.1 21 30-50 11-32 (58)
163 3kz3_A Repressor protein CI; f 23.6 1.3E+02 0.0045 18.3 4.4 14 44-57 36-49 (80)
164 2inf_A URO-D, UPD, uroporphyri 23.6 58 0.002 26.2 3.2 36 24-61 296-331 (359)
165 2kj9_A Integrase; DNA_BRE_C su 23.3 69 0.0024 20.9 3.1 26 27-53 54-79 (118)
166 2dkl_A Trinucleotide repeat co 23.2 1.4E+02 0.0049 20.2 4.7 43 10-58 1-46 (85)
167 3gty_X Trigger factor, TF; cha 22.9 21 0.00073 30.3 0.5 53 26-78 349-404 (433)
168 1sd4_A Penicillinase repressor 22.8 87 0.003 20.6 3.5 53 27-82 7-59 (126)
169 2tpt_A Thymidine phosphorylase 22.8 57 0.0019 28.3 3.2 28 27-54 16-43 (440)
170 3d1n_I POU domain, class 6, tr 22.8 67 0.0023 23.2 3.1 32 29-60 2-37 (151)
171 1fm2_A Glutaryl 7-aminocephalo 22.7 15 0.00052 28.0 -0.4 17 52-68 19-35 (169)
172 3gp4_A Transcriptional regulat 22.7 1.3E+02 0.0045 21.5 4.7 39 17-55 30-70 (142)
173 1mi3_A Xylose reductase, XR; a 22.7 96 0.0033 24.5 4.3 57 36-95 244-303 (322)
174 3b40_A PVDM, probable dipeptid 22.6 61 0.0021 27.8 3.3 36 29-77 371-406 (417)
175 1eij_A Hypothetical protein MT 22.6 48 0.0016 22.8 2.2 19 30-48 36-54 (80)
176 1bgx_T TAQ DNA polymerase; DNA 22.6 23 0.00077 33.0 0.7 36 30-65 467-505 (832)
177 2w84_A Peroxisomal membrane pr 22.6 58 0.002 22.0 2.5 25 33-57 35-59 (70)
178 1fx7_A Iron-dependent represso 22.5 67 0.0023 24.2 3.2 52 27-85 5-58 (230)
179 3h5t_A Transcriptional regulat 22.5 47 0.0016 25.7 2.4 44 37-83 12-57 (366)
180 1pz1_A GSP69, general stress p 22.3 48 0.0016 26.5 2.5 64 32-96 243-310 (333)
181 1qpz_A PURA, protein (purine n 22.0 61 0.0021 24.7 2.9 37 43-82 10-46 (340)
182 1cp9_A Penicillin amidohydrola 21.5 18 0.0006 28.4 -0.3 16 52-67 6-21 (205)
183 3l91_A Acyl-homoserine lactone 21.4 13 0.00043 28.4 -1.1 84 52-139 11-125 (170)
184 3s8q_A R-M controller protein; 21.4 1.5E+02 0.005 18.0 4.6 32 44-81 35-66 (82)
185 3un6_A Hypothetical protein sa 21.4 64 0.0022 24.9 2.9 62 25-91 267-329 (341)
186 1afs_A 3-alpha-HSD, 3-alpha-hy 21.3 87 0.003 24.8 3.8 57 36-95 240-299 (323)
187 2i2x_B MTAC, methyltransferase 21.2 17 0.00057 28.5 -0.5 27 29-55 8-34 (258)
188 2ba3_A NIKA; dimer, bacterial 21.2 51 0.0017 19.5 1.8 41 8-50 3-44 (51)
189 1sfu_A 34L protein; protein/Z- 21.0 70 0.0024 21.7 2.7 20 26-45 39-58 (75)
190 1pjr_A PCRA; DNA repair, DNA r 20.7 93 0.0032 27.5 4.2 44 33-84 336-380 (724)
191 2y9j_Y Lipoprotein PRGK, prote 20.7 32 0.0011 26.0 1.0 50 16-65 24-79 (170)
192 3buv_A 3-OXO-5-beta-steroid 4- 20.5 95 0.0033 24.6 3.9 57 36-95 243-302 (326)
193 2b5a_A C.BCLI; helix-turn-heli 20.4 77 0.0026 18.8 2.6 13 44-56 34-46 (77)
194 1qwk_A Aldose reductase, aldo- 20.3 81 0.0028 24.9 3.4 57 36-95 233-292 (317)
195 1a0p_A Site-specific recombina 20.3 46 0.0016 24.1 1.8 31 24-54 44-74 (290)
196 1r69_A Repressor protein CI; g 20.1 1.2E+02 0.0041 17.4 3.4 15 44-58 25-39 (69)
197 1us0_A Aldose reductase; oxido 20.1 97 0.0033 24.4 3.8 56 37-95 234-292 (316)
198 1brw_A PYNP, protein (pyrimidi 20.0 67 0.0023 27.8 3.1 28 27-54 15-42 (433)
199 1fs1_B SKP1, cyclin A/CDK2-ass 20.0 52 0.0018 23.5 2.0 40 19-62 76-137 (141)
No 1
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=100.00 E-value=5e-85 Score=508.12 Aligned_cols=140 Identities=71% Similarity=1.207 Sum_probs=138.6
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 032468 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (140)
Q Consensus 1 M~rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ngl 80 (140)
|||||++|||+|+|++||++++|+|+++|+||||++||+|||+|+||||||++||||||||+||+|||+||++||++||+
T Consensus 1 M~Rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~gl 80 (151)
T 3u5c_N 1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGL 80 (151)
T ss_dssp -CCTTSSCCCCCCCCCCSCCSCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTC
T ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 032468 81 APEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140 (140)
Q Consensus 81 ap~iPEDL~~LikKAv~~RkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~~LP~~Wk 140 (140)
+|+|||||||||+|||+||||||+|+||+||||+|||||||||||++|||++++||+||+
T Consensus 81 apeiPEDL~~LikKAv~lrkHLe~n~kD~~sK~~L~liESkI~RL~rYYk~~~~LP~~Wk 140 (151)
T 3u5c_N 81 APEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWK 140 (151)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999996
No 2
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=100.00 E-value=5.2e-85 Score=508.79 Aligned_cols=140 Identities=71% Similarity=1.151 Sum_probs=136.6
Q ss_pred CCCCC--CCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc
Q 032468 1 MGRMH--SRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78 (140)
Q Consensus 1 M~rmh--~~~kG~S~S~~P~~~~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~n 78 (140)
||||| ++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|||+||++|||+|
T Consensus 1 M~rmh~~~~~kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~ 80 (153)
T 2xzm_O 1 MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKN 80 (153)
T ss_dssp ---CCSCSSCCCCCCCCCCSCCSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHT
T ss_pred CCCCCcCCCCCCccCCCCCCCCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHc
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 032468 79 GLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140 (140)
Q Consensus 79 glap~iPEDL~~LikKAv~~RkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~~LP~~Wk 140 (140)
|++|+|||||||||+|||+||||||+|+||+||||+|||||||||||+||||++++||+||+
T Consensus 81 glapeiPEDL~~LikKAv~lRkHLe~n~kD~~sK~~L~LiESkI~RL~rYYk~~~~LP~~Wk 142 (153)
T 2xzm_O 81 GCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQKLPPKWK 142 (153)
T ss_dssp TCCCSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHhcCcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999996
No 3
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.6e-71 Score=434.87 Aligned_cols=140 Identities=48% Similarity=0.819 Sum_probs=139.5
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeec-------chhHHH
Q 032468 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVT-------GSKILR 73 (140)
Q Consensus 1 M~rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vt-------G~ki~~ 73 (140)
|||||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|| |+||++
T Consensus 1 M~rmh~~~kG~S~S~~P~~~~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gip~Vk~vt~~~~~~~G~ki~~ 80 (158)
T 3j20_Q 1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITR 80 (158)
T ss_dssp CCCCSSSSSCCCCCCCCCCSSCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCCSCHHHHHCSSSTTSCCCTHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCCCCeeeccccccccCcCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHcCCCCCChhhHHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 032468 74 ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140 (140)
Q Consensus 74 ILk~nglap~iPEDL~~LikKAv~~RkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~~LP~~Wk 140 (140)
||++||++|+|||||++|++||++|++||+.|+||+||+|+|++++||++||.+||+++.+||+||+
T Consensus 81 iLk~~gl~p~iPEDL~~Lt~RI~~Lt~HLk~hkKD~hSrRgL~~lv~kRrrLL~YLk~kd~lp~~w~ 147 (158)
T 3j20_Q 81 ILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWR 147 (158)
T ss_dssp HHHHHTCSCSSCHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHTSSCTTCC
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999996
No 4
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=98.19 E-value=1.3e-06 Score=62.32 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 032468 88 LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (140)
Q Consensus 88 L~~LikKAv~~RkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (140)
...|=.+..++..|++.|+||.+|+++|..+.++-+||.+|++++.
T Consensus 28 iA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d 73 (88)
T 4a5u_B 28 VALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD 73 (88)
T ss_dssp HHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 3556789999999999999999999999999999999999999864
No 5
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=98.18 E-value=8.2e-07 Score=63.93 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 032468 88 LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (140)
Q Consensus 88 L~~LikKAv~~RkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (140)
..-|-.+..++..|++.|+||.+|+++|..+.++-+||.+|++++.
T Consensus 32 IA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d 77 (93)
T 3ulw_A 32 VALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLSYLKRKD 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567889999999999999999999999999999999999999864
No 6
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=97.91 E-value=5.7e-05 Score=53.76 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=52.1
Q ss_pred HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 032468 71 ILRILKAHGLAP---EIPED-LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (140)
Q Consensus 71 i~~ILk~nglap---~iPED-L~~LikKAv~~RkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (140)
-.+|.++.+..+ -=||- ..-|-.+..++..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus 7 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d 73 (88)
T 1a32_A 7 KREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKD 73 (88)
T ss_dssp HHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcC
Confidence 345666666544 45665 6677789999999999999999999999999999999999998864
No 7
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=97.81 E-value=5.6e-05 Score=53.88 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=51.6
Q ss_pred HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 032468 71 ILRILKAHGLAP---EIPED-LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (140)
Q Consensus 71 i~~ILk~nglap---~iPED-L~~LikKAv~~RkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (140)
-.+|.++.+-.+ -=||- ...|-.+..++..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus 8 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~~d 74 (89)
T 2vqe_O 8 KQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQRED 74 (89)
T ss_dssp HHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHHHHHHHHHHHcC
Confidence 345556555444 44555 5677789999999999999999999999999999999999999864
No 8
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=97.68 E-value=4.9e-05 Score=54.15 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 032468 88 LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (140)
Q Consensus 88 L~~LikKAv~~RkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (140)
...|=.+..++..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus 28 iA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d 73 (88)
T 3r8n_O 28 VALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD 73 (88)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHCCCcccchhhHHHHHHHHHHHHHHHHHcC
Confidence 4566778999999999999999999999999999999999999864
No 9
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=97.43 E-value=4.1e-05 Score=54.88 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 032468 87 DLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (140)
Q Consensus 87 DL~~LikKAv~~RkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (140)
-...|=.+..+|..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus 25 QIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~kd 71 (90)
T 3bbn_O 25 QVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKIN 71 (90)
T ss_dssp HHHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667788899999999999999999999999999999999999864
No 10
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=82.64 E-value=2.1 Score=34.43 Aligned_cols=71 Identities=7% Similarity=0.041 Sum_probs=47.3
Q ss_pred CCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 032468 23 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (140)
Q Consensus 23 P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~G---Vp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKA 95 (140)
+.|+....+++.+.+.++|+ |.||+|+-+.--=++| +|.++.-+-.-|.+.++.-.. .+++++.+.-|..+
T Consensus 233 ~~~~~~~~~~~~~~l~~ia~-g~s~aqvaL~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~-~~Ls~ee~~~l~~~ 306 (317)
T 1ynp_A 233 EGYLNYRYDELKLLRESLPT-DRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEA-TPLTAEERQHIQKL 306 (317)
T ss_dssp CCBTTBCHHHHHHHHHHSCS-SSCHHHHHHHHHHTSTTEEEEECCCSSHHHHHHHHHHHTS-CCCCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHc-CCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 46777788888899999999 9999999876555554 233333333334444443221 68988888777665
No 11
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=81.04 E-value=1 Score=25.45 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 032468 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (140)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~i 84 (140)
+++++. +.|+.|...|+|.++|...| || .-..|.++|++.|+.|.+
T Consensus 6 ~~~~~~-~~i~~l~~~g~s~~~ia~~l----gv------s~~Tv~r~l~~~~~~~~~ 51 (52)
T 1jko_C 6 INKHEQ-EQISRLLEKGHPRQQLAIIF----GI------GVSTLYRYFPASSIKKRM 51 (52)
T ss_dssp SCTTHH-HHHHHHHHTTCCHHHHHHTT----SC------CHHHHHHHSCTTC-----
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHH----CC------CHHHHHHHHHHccccccc
Confidence 455555 56777888999999987654 53 445677888888876643
No 12
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=80.88 E-value=0.92 Score=35.43 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=43.9
Q ss_pred CCCCC----ccCChH-HHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHH
Q 032468 21 TPPSW----LKISSQ-DVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 93 (140)
Q Consensus 21 ~~P~W----~~~~~e-eve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~Lik 93 (140)
..|.| +.++.+ .+...+.-|..-|+++++||.++.-.-.+=.-..-.=+...+.|++-|+. ++|+..++.
T Consensus 24 k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~Gls---~~~i~~~l~ 98 (270)
T 3m66_A 24 KHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFS---KADVAQMVR 98 (270)
T ss_dssp TSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHTTCC---HHHHHHHHH
T ss_pred hccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHcCCC---HHHHHHHHH
Confidence 34777 788875 78888888888999999999888655332111111112245567777765 345554443
No 13
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=79.64 E-value=3.1 Score=28.61 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=45.8
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHH
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAV 96 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv 96 (140)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.|.|- .-.+..+||++||.-+-...
T Consensus 16 ~aP~VvAKG~~~~A~~I~~~A~e--------------~~VPi~e~---~~LAr~L~~~~~ig~~IP~ely~aVAeil 75 (83)
T 3bzy_B 16 PLPLVIETGKDAKALQIIKLAEL--------------YDIPVIED---IPLARSLDKNIHKGQYITEDFFEPVAQLI 75 (83)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHH--------------TTCCEEEC---HHHHHHHHHHCCTTCBCCGGGHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHH
Confidence 35555555678888889888874 79998876 45888887 78899999999997765544
No 14
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=78.32 E-value=7.3 Score=27.63 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=52.4
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVAIR 99 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~~R 99 (140)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.+.|- .-.+..+||++||.-|-..+..=
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 78 (98)
T 3c01_E 16 PIPMISVYETNQRALAVRAYAEK--------------VGVPVIVD---IKLARSLFKTHRRYDLVSLEEIDEVLRLLVWL 78 (98)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCTTCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCeecC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Confidence 35555556678888999998874 79998876 45888887 78899999999999887777665
Q ss_pred HHHhHc
Q 032468 100 KHLERN 105 (140)
Q Consensus 100 kHLe~n 105 (140)
--|+..
T Consensus 79 ~~l~~~ 84 (98)
T 3c01_E 79 EEVENA 84 (98)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 555543
No 15
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=78.17 E-value=3.4 Score=29.29 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=47.0
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVA 97 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~ 97 (140)
.+|-=+-.-.+++-+.|.++|+ +||||-+.. ..+.|.|- .-.+..+||++||.-+-..+.
T Consensus 31 ~aP~VvAKG~~~~A~~I~~~A~--------------e~gVPi~e~---~~LAr~L~~~~~ig~~IP~ely~aVAeiLa 91 (97)
T 3t7y_A 31 KAPWIIAMGVNLRAKRIIAEAE--------------KYGVPIMRN---VPLAHQLLDEGKELKFIPETTYEAVGEILL 91 (97)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHH--------------HHTCCEEEC---HHHHHHHHHHCCBTSBCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHH--------------HcCCeEEEC---HHHHHHHHHcCCCCCccCHHHHHHHHHHHH
Confidence 3566666677889999999887 489998876 45888886 778999999999977755443
No 16
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=77.81 E-value=1.2 Score=28.88 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=35.4
Q ss_pred HHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCC
Q 032468 37 ICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPE 83 (140)
Q Consensus 37 Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~ 83 (140)
|.++|+ -|+|+|-|-.+|.+. |.|..-|-.+|.++.++-|..|.
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~---~~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNP---DKVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCC---CCSCHHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHHHHCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCcc
Confidence 344554 499999999999876 45788899999999999999775
No 17
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=75.70 E-value=1.3 Score=37.53 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=28.7
Q ss_pred CCCCCCCCCcCCCCCCCCCCCc----------cCChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 5 HSRGKGISASALPYKRTPPSWL----------KISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 5 h~~~kG~S~S~~P~~~~~P~W~----------~~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
++.+.+.-+|..+-....|+|- ++|.||.++.+-.+..--+||+|||-.|
T Consensus 6 ~~~~~~~~~~p~~~~~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL 65 (377)
T 3r88_A 6 GSSGGSRGGSPKAEAASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFA 65 (377)
T ss_dssp ------------------CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 3445554456556666779997 6799999999999999999999999765
No 18
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=74.87 E-value=3.1 Score=36.80 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhcCC---CcchhhhHhhhccCCCcee
Q 032468 30 SQDVEDNICKFAKKGL---TPSQIGVILRDSHGIAQVK 64 (140)
Q Consensus 30 ~eeve~~IvklakkG~---~pSqIG~~LRD~~GVp~Vk 64 (140)
-+++++.|.+++-..+ ||.|+|.+|.|..|+|..+
T Consensus 175 ~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lgl~~~~ 212 (540)
T 4dfk_A 175 IARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIG 212 (540)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCCCCCC
Confidence 4677888888884433 8999999999999999766
No 19
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=74.33 E-value=3 Score=31.05 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=32.7
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ngla 81 (140)
.+-+|++++.+++++.-..+++-|-+++ +.++|+.+.+++++-||-
T Consensus 12 ~~~~~~~~~~~~L~~~F~~Fa~fG~~~~---------------~~M~~k~f~K~~kD~~li 57 (125)
T 1pul_A 12 AAAAGFNWDDADVKKRWDAFTKFGAATA---------------TEMTGKNFDKWLKDAGVL 57 (125)
T ss_dssp ------CCCHHHHHHHHHHHHHHTCSSS---------------SCCCHHHHHHHHHHHTSC
T ss_pred HHHHhcCccHHHHHHHHHHHHhcCCCcc---------------ccCcHHHHHHHHHHCCCC
Confidence 4567999999999999999999877665 457777777777777765
No 20
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=74.21 E-value=3.4 Score=29.16 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=50.1
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVAIR 99 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~~R 99 (140)
.+|-=+-.-.+++-+.|.++|++ +|||-+.. ..+.|.|- .-.+..+||++||.-|-..+..=
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 78 (93)
T 2vt1_B 16 PAPFISLIETNQCALAVRKYANE--------------VGIPTVRD---VKLARKLYKTHTKYSFVDFEHLDEVLRLIVWL 78 (93)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHH--------------TTCCEEEC---HHHHHHHHHHCCSSEECCTTTHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCEEEC---HHHHHHHHHcCCCCCccCHHHHHHHHHHHHHH
Confidence 45655666778899999998874 79998876 45888887 77899999999998887766654
Q ss_pred HHH
Q 032468 100 KHL 102 (140)
Q Consensus 100 kHL 102 (140)
--|
T Consensus 79 ~~l 81 (93)
T 2vt1_B 79 EQV 81 (93)
T ss_dssp HHC
T ss_pred HHH
Confidence 434
No 21
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=72.24 E-value=5.2 Score=30.25 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=50.8
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVAIR 99 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~~R 99 (140)
.+|-=+-.-.+++-+.|.++|+ +||||-+.. ..+.+.|- .-.+..+||++||.-|-..+..=
T Consensus 69 ~AP~VvAKG~g~~A~~I~e~A~--------------e~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 131 (144)
T 2jlj_A 69 PLPLVTFKYTDAQVQTVRKIAE--------------EEGVPILQR---IPLARALYWDALVDHYIPAEQIEATAEVLRWL 131 (144)
T ss_dssp SSCEEEEEEETHHHHHHHHHHH--------------HHTCCEEEC---HHHHHHHHHHCCTTSBCCGGGHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHH--------------HcCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Confidence 4565566667888899999887 489998876 45888887 78899999999998887777665
Q ss_pred HHHhH
Q 032468 100 KHLER 104 (140)
Q Consensus 100 kHLe~ 104 (140)
-.|+.
T Consensus 132 ~~l~~ 136 (144)
T 2jlj_A 132 ERQNI 136 (144)
T ss_dssp HHC--
T ss_pred HHHhh
Confidence 54543
No 22
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=71.36 E-value=7.2 Score=32.53 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 032468 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (140)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKA 95 (140)
...+.+..|-.|..-|++|+|||.+|.-..+|-.- +=..+...|..-|+. |||+..+|+++
T Consensus 42 ~~~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~---~l~~~i~~L~~LGls---~e~V~kiL~k~ 102 (335)
T 4fp9_B 42 GSLELERVMSSLLDMGFSNAHINELLSVRRGASLQ---QLLDIISEFILLGLN---PEPVCVVLKKS 102 (335)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH---HHHHHHHHHHHTTCC---HHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHCCCCHHHHHHHHHhCcccchh---HHHHHHHHHHHcCCC---HHHHHHHHHhC
Confidence 34567888888889999999999999988766321 112345567777865 56777666654
No 23
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.27 E-value=11 Score=25.34 Aligned_cols=51 Identities=22% Similarity=0.129 Sum_probs=35.2
Q ss_pred CCCCcCCCCCCCCCCCcc-CChHHHHHHHHHHHhcCCCcchhhhHhhhccCC
Q 032468 10 GISASALPYKRTPPSWLK-ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60 (140)
Q Consensus 10 G~S~S~~P~~~~~P~W~~-~~~eeve~~IvklakkG~~pSqIG~~LRD~~GV 60 (140)
|.|+|.-|+-...|..++ +|+++++.+-..+.+.-++...--..|-.+.|+
T Consensus 1 gss~s~~~~p~~~p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l 52 (89)
T 2dmp_A 1 GSSGSSGAYPDFAPQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKL 52 (89)
T ss_dssp CCSSCCCCCSCCCSSCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCccccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCC
Confidence 678888888887887777 899998888777666665554444444444443
No 24
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=68.92 E-value=4.2 Score=31.72 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=32.9
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCC
Q 032468 25 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIA 61 (140)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp 61 (140)
|...+..|+...|+.+.+.|.+.++|-..|...||--
T Consensus 3 ~~~~~~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~ 39 (345)
T 3hot_A 3 SFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQ 39 (345)
T ss_dssp --CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSC
T ss_pred cccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCC
Confidence 8899999999999999999999999999999999843
No 25
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=68.05 E-value=12 Score=26.05 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=43.8
Q ss_pred CCCCcCCCC----CCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHH----HHHcCCC
Q 032468 10 GISASALPY----KRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRI----LKAHGLA 81 (140)
Q Consensus 10 G~S~S~~P~----~~~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~I----Lk~ngla 81 (140)
|.|+|.-|. ...+..| |+|||.+-+.++ |+.- ..|.+ +.|+|..++.. |++-++.
T Consensus 1 ~~~~~~~~~p~~~~~~v~~W---s~edV~~WL~~~---Gl~~------Y~~~F-----~~IdG~~LL~Lt~~dLk~~~Lg 63 (97)
T 2d8c_A 1 GSSGSSGMLSARTMKEVVYW---SPKKVADWLLEN---AMPE------YCEPL-----EHFTGQDLINLTQEDFKKPPLY 63 (97)
T ss_dssp CCCSSCSCCCCSCCSCCSSC---CTTHHHHHHHHT---TCTT------TTTTT-----TTCCHHHHHTCCHHHHHSSSSS
T ss_pred CCCCCCCCCCCCCCCchhhC---CHHHHHHHHHHc---CCHH------HHHHH-----HcCCCHHHhcCCHHHHhhCCCC
Confidence 456666544 3455677 789998887654 5421 12333 44999988654 7774454
Q ss_pred CCChhhHHHHHHHHHHHH
Q 032468 82 PEIPEDLYHLIKKAVAIR 99 (140)
Q Consensus 82 p~iPEDL~~LikKAv~~R 99 (140)
-.-.-+-..|+...-.|+
T Consensus 64 I~~~g~rkkl~~~I~~L~ 81 (97)
T 2d8c_A 64 RVSSDNGQRLLDMIETLK 81 (97)
T ss_dssp SCSTTTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 455566666665554554
No 26
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=67.89 E-value=6.7 Score=29.41 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=46.7
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVA 97 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~ 97 (140)
.+|-=+-.-.+++-+.|.++|+ +||||-+.. ..+.+.|- .-.+..+||++||.-|-..+.
T Consensus 70 ~AP~VvAKG~g~~A~~I~e~A~--------------e~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa 130 (137)
T 3bzs_A 70 PLPLVIETGKDAKALQIIKLAE--------------LYDIPVIED---IPLARSLYKNIHKGQYITEDFFEPVAQLIR 130 (137)
T ss_dssp SSCEEEEEEETHHHHHHHHHHH--------------HHTCCEEEC---HHHHHHHHHHSCTTCBCCGGGHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHH--------------HcCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Confidence 4565555667888899999887 489998876 45888887 788999999999987765544
No 27
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=67.41 E-value=9.7 Score=25.63 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=30.7
Q ss_pred cCChHHHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 032468 27 KISSQDVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (140)
Q Consensus 27 ~~~~eeve~~Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ngl 80 (140)
.+++++. +.|+.+.. .+.|+.+|-..| |+ .+.-..|.++|+++|+
T Consensus 60 ~l~~~~~-~~i~~~~~~~~~s~~~i~~~l----g~----~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDE-RNVIRAASNSCKTARDIRNEL----QL----SASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHH-HHHHHHHHHCCCCHHHHHHHT----TC----CSCHHHHHHHHHHTC-
T ss_pred cCCHHHH-HHHHHHHhCCCCCHHHHHHHH----CC----CccHHHHHHHHHHCCC
Confidence 4566665 44555444 558999888766 55 3555779999999997
No 28
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=64.43 E-value=5.5 Score=25.70 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=26.1
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 032468 25 WLKISSQDVEDNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~~LR 55 (140)
.-++++++|.+.+..|.++|++|+.|...+.
T Consensus 48 l~~it~~~i~~~~~~l~~~g~s~~t~~~~~~ 78 (118)
T 2kd1_A 48 LAKLTSLHMQNYVNSLRDEGLKRGTIEKIIK 78 (118)
T ss_dssp GGGCCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3467999999999999999999998876653
No 29
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=64.40 E-value=6.4 Score=25.14 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=25.8
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 25 WLKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
.-++++++|.+.+..|.++|++|+.+...+
T Consensus 50 l~~It~~~i~~~~~~l~~~~~s~~t~~~~~ 79 (117)
T 2kkp_A 50 LKKLQPADIQRLYASKLESGLSPTRVRYIH 79 (117)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 456799999999999999999999887665
No 30
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=64.35 E-value=5.7 Score=25.49 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=33.3
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 032468 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (140)
Q Consensus 43 kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~i 84 (140)
-|+|+|-|-.+|.+.-+--.|..-|-.+|.++.++-|..|..
T Consensus 10 aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 10 AGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 499999999999976411146778889999999999998874
No 31
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=62.16 E-value=8.9 Score=24.51 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=39.2
Q ss_pred CCccCChHHHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChh
Q 032468 24 SWLKISSQDVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPE 86 (140)
Q Consensus 24 ~W~~~~~eeve~~Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPE 86 (140)
.+-++++++|.+.+..|.+ +|++++-|...+.- + +.+.+.+.+.|+-..=|-
T Consensus 48 ~l~~it~~~i~~~~~~l~~~~~~s~~Ti~~~~~~------l-----r~~~~~a~~~~~i~~nP~ 100 (112)
T 2key_A 48 QFHELTEDFLRDYLIYMKKTLCNADSTAQRNLST------I-----KIYVSAAIKKGYMENDPF 100 (112)
T ss_dssp CTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHH------H-----HHHHHHHHHTTSCCSCHH
T ss_pred CHHHcCHHHHHHHHHHHHHccCcchhhHHHHHHH------H-----HHHHHHHHHCCCcccCCc
Confidence 4667899999999999998 99999988877652 2 236667777787655553
No 32
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=62.06 E-value=9.4 Score=28.11 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=44.9
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHH
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKA 95 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKA 95 (140)
.+|-=+-.-.+++-+.|.++|+ +||||-+.. ..+.+.|- .-.+..+||++||.-+-..
T Consensus 60 ~AP~VvAKG~~~~A~~I~~~A~--------------e~~VPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAei 118 (123)
T 2jli_A 60 PLPLVTFKYTDAQVQTVRKIAE--------------EEGVPILQR---IPLARALYWDALVDHYIPAEQIEATAEV 118 (123)
T ss_dssp SSCEEEEEEETHHHHHHHHHHH--------------HHTCCEEEC---HHHHHHHHHHCCTTSBCCGGGHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHH--------------HcCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHH
Confidence 3565555667888888998887 489998876 45888887 7889999999999766443
No 33
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=61.07 E-value=7.8 Score=25.67 Aligned_cols=53 Identities=8% Similarity=0.104 Sum_probs=41.6
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhh
Q 032468 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPED 87 (140)
Q Consensus 24 ~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPED 87 (140)
.|.++++++|.+-+..|.++|++|+-|-..|.- + +.+.+.|.+.|+-+.=|-+
T Consensus 50 ~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ls~------l-----r~f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 50 AMRELTGWKLDEYETFRRGSDVSPATLNGEMQT------L-----KNWLEYLARIDVVDEDLPE 102 (117)
T ss_dssp SGGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHH------H-----HHHHHHHHHTTSSCTTSGG
T ss_pred ChHHCCHHHHHHHHHHHHhCCCCHHHHHHHHHH------H-----HHHHHHHHHcCCcccCHHH
Confidence 578899999999999999999999988877642 1 3477788888876655543
No 34
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=59.68 E-value=9 Score=33.76 Aligned_cols=56 Identities=21% Similarity=0.333 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHhcC---CCcchhhhHhhhccCCCceee------ecchhHHHHHHHcCCCCCChhhH
Q 032468 30 SQDVEDNICKFAKKG---LTPSQIGVILRDSHGIAQVKS------VTGSKILRILKAHGLAPEIPEDL 88 (140)
Q Consensus 30 ~eeve~~IvklakkG---~~pSqIG~~LRD~~GVp~Vk~------vtG~ki~~ILk~nglap~iPEDL 88 (140)
-+++++.|.+++-.- -||.|+|.+|-|..|+|..|. -|...+++-|.+. .++++.+
T Consensus 240 ~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lglp~~kktk~g~~st~~~vL~~l~~~---~p~~~~i 304 (605)
T 2kfn_A 240 LAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALD---YPLPKVI 304 (605)
T ss_dssp HHHHHHHHHHHSSSCCCSCTTTTSHHHHTTTSSCSCCCCCC----TTTCCHHHHHTTT---CSHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCCCCCCcCCCCCccccHHHHHHHHhc---ChHHHHH
Confidence 356777788777422 378999999999999985442 4445666655432 3444444
No 35
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=59.19 E-value=5.9 Score=29.20 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=42.3
Q ss_pred hhHHHHHHHHH---------HHHHHHhHcCCcccchhH---HHHHHHHH-HHHHHHHHhcCC-CCC
Q 032468 86 EDLYHLIKKAV---------AIRKHLERNRKDKDSKFR---LILVESRI-HRLARYYKKTKK-LPP 137 (140)
Q Consensus 86 EDL~~LikKAv---------~~RkHLe~n~kD~~~k~~---L~LiESkI-~RL~rYYk~~~~-LP~ 137 (140)
|+|+++|-+|- .||+-|+++-|.+++... .++|-+|. +.+++||=.... +|+
T Consensus 6 q~L~~~lS~AY~DpeVk~~p~Lr~~lf~~Ak~L~~~~d~~~y~~V~~KLs~~IS~Y~l~hh~~~P~ 71 (111)
T 1tdp_A 6 QTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPS 71 (111)
T ss_dssp HHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHTCTTSCCCCCG
T ss_pred HHHHHHHHHHhCCHhhhcCHHHHHHHHHHHHHhccCCCcchhHhHHHHHHhHHHHHHHHhcccCcH
Confidence 68889888884 589999999999888775 88888886 568999988776 664
No 36
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=56.85 E-value=14 Score=29.28 Aligned_cols=62 Identities=16% Similarity=0.290 Sum_probs=38.4
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhhcc-CCCceeeecchh----HHHHHHHcCCCCCChhhHHHHHHHHH
Q 032468 33 VEDNICKFAK-KGLTPSQIGVILRDSH-GIAQVKSVTGSK----ILRILKAHGLAPEIPEDLYHLIKKAV 96 (140)
Q Consensus 33 ve~~Ivklak-kG~~pSqIG~~LRD~~-GVp~Vk~vtG~k----i~~ILk~nglap~iPEDL~~LikKAv 96 (140)
..+.+.++|+ .|.||+|+-+.--=++ ||.. .|.|.+ |.+.++.-++.+++++|-+..|..+.
T Consensus 254 ~~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~--vI~g~~~~~~l~en~~a~~~~~~L~~e~~~~i~~~~ 321 (327)
T 3eau_A 254 KLKELQAIAERLGCTLPQLAIAWCLRNEGVSS--VLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSIL 321 (327)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHSSTTCCE--EEECCSSHHHHHHHHGGGGGGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHhCCCCce--EEeCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 3456677775 7999999987654444 5532 245544 33444433444578888888776653
No 37
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=56.78 E-value=13 Score=33.14 Aligned_cols=60 Identities=28% Similarity=0.394 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhcCC---CcchhhhHhhhccCCCceee-ecchhH-HHHHHHcCCCCCChhhHH
Q 032468 30 SQDVEDNICKFAKKGL---TPSQIGVILRDSHGIAQVKS-VTGSKI-LRILKAHGLAPEIPEDLY 89 (140)
Q Consensus 30 ~eeve~~IvklakkG~---~pSqIG~~LRD~~GVp~Vk~-vtG~ki-~~ILk~nglap~iPEDL~ 89 (140)
-+++++.|.+++-.-+ ||.|+|.+|-|..|+|..|. =||-+. ..+|++-.-..++++.+.
T Consensus 227 ~~~l~~~~~~~~g~~fN~~Spkql~~~Lf~~lgl~~~kktktg~st~~~vL~~l~~~~p~~~~il 291 (592)
T 3pv8_A 227 LGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENIL 291 (592)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCCEETTEECCCHHHHHHTTTTCTHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCCCCCCCCCCCchHHHHHHHHhhcchHHHHH
Confidence 4677888888885433 68999999999999997653 223221 235554332344555444
No 38
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=56.21 E-value=2.7 Score=29.67 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=21.9
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhhhcc
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVILRDSH 58 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~LRD~~ 58 (140)
..++||+++.+-+|++.. .||++|-.|.
T Consensus 35 ~~~~ee~~~~~~~l~~~~----digIIlIte~ 62 (102)
T 2i4r_A 35 VTSDEEIVKAVEDVLKRD----DVGVVIMKQE 62 (102)
T ss_dssp CCSHHHHHHHHHHHHHCS----SEEEEEEEGG
T ss_pred CCCHHHHHHHHHHHhhCC----CeEEEEEeHH
Confidence 468899999999999873 6777766554
No 39
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=55.94 E-value=25 Score=25.57 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=48.2
Q ss_pred cCChHHHHHHHHHHHhc-------CC-------CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHH
Q 032468 27 KISSQDVEDNICKFAKK-------GL-------TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92 (140)
Q Consensus 27 ~~~~eeve~~Ivklakk-------G~-------~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~Li 92 (140)
..++|++.+.+.++.++ |+ ||+.++..|.+..++ .|+-|+|-.+--.|+.-... ..-.+|-.|+
T Consensus 41 ~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmGSp~n~a~~l~~~~~~-~v~vI~gvnlpmllea~~~~-~~~~~L~el~ 118 (139)
T 3gdw_A 41 TMEVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNSFGNMLFEETGI-RTKAITMTSTMIVLEAIRMA-SVGRSLEDIY 118 (139)
T ss_dssp TSCHHHHHHHHHHHHHTSTGGGTTCEEEEECSGGGGGHHHHHHHHHCC-CEEEECSCCHHHHHHHHHHH-HTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCHHHHHHHHHHhhCC-CEEEEeCCCHHHHHHHHHHh-hcCCCHHHHH
Confidence 45788888888887653 32 899999999888665 49999999987666532100 0123555666
Q ss_pred HHH-HHHHHHH
Q 032468 93 KKA-VAIRKHL 102 (140)
Q Consensus 93 kKA-v~~RkHL 102 (140)
..| .+++...
T Consensus 119 ~~~~~~~~~~~ 129 (139)
T 3gdw_A 119 QNIQLSFESVV 129 (139)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 665 4454433
No 40
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=55.73 E-value=25 Score=25.08 Aligned_cols=57 Identities=25% Similarity=0.426 Sum_probs=42.7
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHH
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRK 100 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv~~Rk 100 (140)
+++ +|+.+.||++...|.|-.+|- ...|||.... +.+-|.++ +++..-+++|-..+-
T Consensus 12 k~t-~e~~e~I~~~i~~G~sl~~i~----~~~~~ps~~T-----~~~W~~~~-------~ef~e~~~~Ar~~~~ 68 (140)
T 4dyq_A 12 DYM-PEVADDICSLLSSGESLLKVC----KRPGMPDKST-----VFRWLAKH-------EDFRDKYAKATEARA 68 (140)
T ss_dssp SCC-TTHHHHHHHHHHTTCCHHHHH----TSTTCCCHHH-----HHHHHHHC-------HHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHCCCcHHHHH----hcCCCCCHHH-----HHHHHHcC-------HHHHHHHHHHHHHHH
Confidence 455 467788999999999988876 3578886554 77888886 568888888866544
No 41
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=55.66 E-value=3.1 Score=31.22 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=9.7
Q ss_pred hHHHHHHHcCCCCCChhhHHHH
Q 032468 70 KILRILKAHGLAPEIPEDLYHL 91 (140)
Q Consensus 70 ki~~ILk~nglap~iPEDL~~L 91 (140)
.+.+.|.+.|+-+.-|+|+|-|
T Consensus 259 ~~~~~l~~~g~i~~~~~~~~~~ 280 (280)
T 1zbm_A 259 KLYEMAEAKGLIKMPKLDILRL 280 (280)
T ss_dssp HHHHHHHTTTCC----------
T ss_pred HHHHHHHHcCCcCCCChhhccC
Confidence 4567799999999999998865
No 42
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=54.73 E-value=24 Score=28.46 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=43.5
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhhccCC--CceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHH
Q 032468 33 VEDNICKFAK-KGLTPSQIGVILRDSHGI--AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVA 97 (140)
Q Consensus 33 ve~~Ivklak-kG~~pSqIG~~LRD~~GV--p~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv~ 97 (140)
+.+.+.++|+ .|.||+|+-+.--=++|| |.+..-+-..|.+.|..-++ +++++.+..|..+..
T Consensus 265 ~~~~l~~iA~~~g~t~aqvaL~w~l~~~v~~~I~g~~~~~~l~enl~a~~~--~L~~e~~~~l~~~~~ 330 (348)
T 3n2t_A 265 AMDEFEKLAEKRGKSVMAFAVRWVLDQGPVIALWGARKPGQVSGVKDVFGW--SLTDEEKKAVDDILA 330 (348)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTTEEEEEECSSGGGGTTHHHHSSC--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Confidence 4456777775 799999998764444464 55555555566667766555 799888888877653
No 43
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=54.25 E-value=10 Score=20.56 Aligned_cols=26 Identities=4% Similarity=0.079 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 28 ISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
+++++. ..|+.+...|+|..+|...|
T Consensus 6 l~~~~~-~~i~~~~~~g~s~~~IA~~l 31 (51)
T 1tc3_C 6 LSDTER-AQLDVMKLLNVSLHEMSRKI 31 (51)
T ss_dssp CCHHHH-HHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHH
Confidence 355554 45667788999999998765
No 44
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=52.83 E-value=22 Score=24.15 Aligned_cols=41 Identities=20% Similarity=0.433 Sum_probs=31.8
Q ss_pred CCCCCCCCCCccCChHHHH--HHHHHHHhcCCCcchhhhHhhh
Q 032468 16 LPYKRTPPSWLKISSQDVE--DNICKFAKKGLTPSQIGVILRD 56 (140)
Q Consensus 16 ~P~~~~~P~W~~~~~eeve--~~IvklakkG~~pSqIG~~LRD 56 (140)
.|.++..--.-.++.++|+ ..|..|...|+|..+|..+|.+
T Consensus 28 ~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 28 VPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred CCCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 3554444455668999988 4688899999999999999964
No 45
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=57.36 E-value=3 Score=29.00 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=42.7
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVA 97 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~ 97 (140)
.+|-=+-.-.+++-+.|.++|+ +||||-+... .+.|.|- .-.+..+||++||.-+-..+.
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~--------------e~~VPi~e~~---~LAr~Ly~~~~ig~~IP~ely~aVAeiLa 76 (87)
T 3b1s_B 16 KAPVVVAKGKGTIAQKIVEIAE--------------NYSIPVVRKP---ELARALYPAVEVGKEISPKFYKAVAEIIA 76 (87)
Confidence 3455555566777777777776 4799988763 4777776 677889999999977655443
No 46
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=52.03 E-value=16 Score=29.28 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=40.5
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHH
Q 032468 33 VEDNICKFAK-KGLTPSQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV 96 (140)
Q Consensus 33 ve~~Ivklak-kG~~pSqIG~~LRD~~G---Vp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv 96 (140)
+.+.+.++|+ .|.||+|+-+.--=++| +|.+..-+-..|.+.++.-++ +++++-+..|..+.
T Consensus 244 ~~~~l~~ia~~~g~t~aqvaL~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~--~L~~e~~~~l~~~~ 309 (337)
T 3v0s_A 244 IYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGTTKIKNLHNNVGALKV--XLTKEDLKEISDAV 309 (337)
T ss_dssp -CHHHHHHHHHTTSCHHHHHHHHHHTTCTTBCCCCCCSCHHHHHHHHHGGGC--CCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHhh
Confidence 3456677776 69999999876655665 444454455555666655444 78888887776653
No 47
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=51.61 E-value=4.7 Score=33.65 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=34.8
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ngl 80 (140)
..|.|+. +..+...++..|.+ |+|.++|-. |.|.+.+|+|++.|-
T Consensus 269 ~~p~gl~-d~s~~p~L~~~L~~-g~se~~i~k-------------i~g~N~lRv~~~~~~ 313 (318)
T 3neh_A 269 DHVKGLE-HVGKYQSFLETLEK-HYTKEEIEG-------------FASRNFLNHLPKEGH 313 (318)
T ss_dssp SCBBTBS-SGGGHHHHHHHHTT-TSCHHHHHH-------------HHTHHHHHTCCC---
T ss_pred CCCCCCC-CHHHHHHHHHHHHh-cCCHHHHHH-------------HHhHhHHHHHhhhcc
Confidence 4577886 78889999999999 999999865 567778888877763
No 48
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=51.26 E-value=16 Score=34.06 Aligned_cols=56 Identities=30% Similarity=0.597 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCC--CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHH
Q 032468 33 VEDNICKFAKKGL--TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKK 94 (140)
Q Consensus 33 ve~~IvklakkG~--~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikK 94 (140)
+++.|.++.++|- =|.+.-..|-|.||+|.= =+..|++|+|+.-++|++.+.+|.+
T Consensus 434 l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~d------lt~~ia~e~g~~vd~~~~F~~~m~~ 491 (752)
T 2zze_A 434 VRREIAKLKKKGIKEIPVEXLVTFYESHGLTPE------IVXEIAEKEGVKVNIPDNFYSMVAK 491 (752)
T ss_dssp HHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHH------HHHHHHTTSSCCCCCCTTHHHHHHG
T ss_pred HHHHHHHhhhcCCCccCHHHHHHHHhccCCCHH------HHHHHHHHcCCccCCcccHHHHHHH
Confidence 4445556655443 477888999999999952 1456889999999999999988754
No 49
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=49.93 E-value=3.8 Score=27.06 Aligned_cols=11 Identities=55% Similarity=1.150 Sum_probs=9.6
Q ss_pred CCCChhhHHHH
Q 032468 81 APEIPEDLYHL 91 (140)
Q Consensus 81 ap~iPEDL~~L 91 (140)
.|++|+||.+|
T Consensus 7 EpDLP~DL~~l 17 (57)
T 2ka4_B 7 EPDLPHDLRHL 17 (57)
T ss_dssp CCCCCHHHHTS
T ss_pred CCCccHHHHHh
Confidence 68999999876
No 50
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=48.92 E-value=24 Score=23.92 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=26.9
Q ss_pred CCCcc---CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceee
Q 032468 23 PSWLK---ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKS 65 (140)
Q Consensus 23 P~W~~---~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~ 65 (140)
|.|-. ++.|++++.|.....-.+|.++-+- +||||.--.
T Consensus 6 pk~~ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak----~yGVP~sTL 47 (70)
T 2cob_A 6 SGRGRYRQYNSEILEEAISVVMSGKMSVSKAQS----IYGIPHSTL 47 (70)
T ss_dssp CCSSCSCCCCHHHHHHHHHHHHTTSSCHHHHHH----HHTCCHHHH
T ss_pred cccccccccCHHHHHHHHHHHHcCCccHHHHHH----HhCCChHHH
Confidence 55554 4888888888777543388887664 699997543
No 51
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=48.31 E-value=10 Score=26.18 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCc--eeeecchhHHHHHHHcCC
Q 032468 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ--VKSVTGSKILRILKAHGL 80 (140)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~--Vk~vtG~ki~~ILk~ngl 80 (140)
+.-+++-..|.++-.-.-|..+|...|.++|+++- +. -.=...++.|.++|+
T Consensus 39 i~Ln~~a~~Iw~l~DG~rtv~eIv~~L~~~y~~~~e~i~-~DV~~FL~~L~~~g~ 92 (95)
T 3g2b_A 39 VELDDIALVVAQRYDGTQSLAQIAQTLAAEFDADASEIE-TDVIELTTTLHQKRL 92 (95)
T ss_dssp CCCCTHHHHHHHHCCSSSCHHHHHHHHHHHTTCCHHHHH-HHHHHHHHHHHHTTC
T ss_pred eecCHHHHHHHHHccCCCCHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHCcC
Confidence 35678888999999999999999999999999881 11 011236667777775
No 52
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=46.70 E-value=17 Score=30.96 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=34.5
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc
Q 032468 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78 (140)
Q Consensus 22 ~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~n 78 (140)
.|.|+. +..+...++..|.+.|+|.++|-. |.|.+.+|+|++.
T Consensus 312 ~p~gl~-d~s~~p~L~~~L~~rG~se~~i~k-------------i~g~N~lRvl~~~ 354 (364)
T 3ly0_A 312 IPQGIA-DVTGLPALQAAMRAHGYDEPLMRK-------------LCHENWYGLLERT 354 (364)
T ss_dssp CCTTTC-SGGGHHHHHHHHHHHTCCHHHHHH-------------HHTHHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHHHHCCCCHHHHHH-------------HHhHhHHHHHHHH
Confidence 567776 778899999999999999998865 5677788888764
No 53
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=45.84 E-value=42 Score=26.53 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=38.0
Q ss_pred HHHHHHHHHHh-cCCCcchhhhHhhhccCC---CceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 032468 32 DVEDNICKFAK-KGLTPSQIGVILRDSHGI---AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (140)
Q Consensus 32 eve~~Ivklak-kG~~pSqIG~~LRD~~GV---p~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKA 95 (140)
++.+.+.++|+ .|.||+|+-+.--=++|. |.+..-+-.-|.+.|+.-+ .+++++.+.-|..+
T Consensus 272 ~~~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~~I~g~~~~~~l~enl~a~~--~~L~~e~~~~l~~~ 337 (346)
T 1lqa_A 272 KAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLH--LELSEDVLAEIEAV 337 (346)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHTCTTEEEEEECCSSHHHHHHHHGGGG--CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhcc--CCCCHHHHHHHHHH
Confidence 44556667764 799999998766556652 3333333344555554433 47888777777654
No 54
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=45.39 E-value=27 Score=22.21 Aligned_cols=31 Identities=6% Similarity=-0.088 Sum_probs=18.5
Q ss_pred CCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 032468 44 GLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (140)
Q Consensus 44 G~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ngl 80 (140)
|+|+|.|..+-+... .| +-..+.+|.+.-|+
T Consensus 38 gis~~~is~~E~G~~-~p-----~~~~l~~ia~~l~v 68 (86)
T 3eus_A 38 DKPQSFVAKVETRER-RL-----DVIEFAKWMAACEG 68 (86)
T ss_dssp TCCHHHHHHHHTTSS-CC-----BHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHCCCC-CC-----CHHHHHHHHHHcCC
Confidence 666666666666554 22 33446677776665
No 55
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=45.28 E-value=55 Score=26.12 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=39.5
Q ss_pred HHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc-CC--CCCChhhHHHHHHHHH
Q 032468 32 DVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH-GL--APEIPEDLYHLIKKAV 96 (140)
Q Consensus 32 eve~~Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~n-gl--ap~iPEDL~~LikKAv 96 (140)
++.+.+.++|+ .|.||+|+-+.--=+++-. +-.|.|.+=.+-|++| +. ..+++++-+..|..+.
T Consensus 265 ~~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v-~~~I~g~~~~~~l~en~~a~~~~~Ls~e~~~~i~~~~ 332 (346)
T 3n6q_A 265 NSLRLLNEMAQQRGQSMAQMALSWLLKDDRV-TSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHI 332 (346)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTSSTTC-SEEEECCSSHHHHHHHHGGGGCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHhCCCC-cEEEcCCCCHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 45556777775 7999999987655555411 2344554433344444 32 3689988888887664
No 56
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=43.89 E-value=13 Score=31.48 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCCcchhhhHhhhc
Q 032468 31 QDVEDNICKFAKKGLTPSQIGVILRDS 57 (140)
Q Consensus 31 eeve~~IvklakkG~~pSqIG~~LRD~ 57 (140)
+.|.+.|.+|.+.|++++.|+++.|+.
T Consensus 331 ~~ia~~I~~l~~~g~~~~diaVL~r~~ 357 (647)
T 3lfu_A 331 RFVVNRIKTWQDNGGALAECAILYRSN 357 (647)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEESSG
T ss_pred HHHHHHHHHHHHcCCCccCEEEEEeCc
Confidence 346677888888999999999999984
No 57
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=43.82 E-value=14 Score=26.07 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhcCCCcchhhhHhhhccC
Q 032468 30 SQDVEDNICKFAKKGLTPSQIGVILRDSHG 59 (140)
Q Consensus 30 ~eeve~~IvklakkG~~pSqIG~~LRD~~G 59 (140)
+.+...+|.++-+.|.|..||=-.|.+.||
T Consensus 42 A~dlR~~Vre~l~~G~Sd~eI~~~mv~RYG 71 (90)
T 2kw0_A 42 ATDLRQKVYELMQEGKSKKEIVDYMVARYG 71 (90)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 568889999999999999999999999998
No 58
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=49.56 E-value=4.9 Score=29.28 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=47.7
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHH-HHcCCCCCChhhHHHHHHHHHHHHH
Q 032468 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRIL-KAHGLAPEIPEDLYHLIKKAVAIRK 100 (140)
Q Consensus 22 ~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~IL-k~nglap~iPEDL~~LikKAv~~Rk 100 (140)
+|-=+-.-.+++-+.|.++|+ +||||-+... .+.+.| ..-.+..+||++||.-|-..+..=-
T Consensus 17 AP~VvAKG~~~~A~~I~e~A~--------------e~gVPi~e~~---~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v~ 79 (114)
T 3b0z_B 17 APKVVAKGAGLIALRIREIGA--------------EHRVPTLEAP---PLARALYRHAEIGQQIPGQLYAAVAEVLAWVW 79 (114)
Confidence 455555566777777777776 4799988763 477788 5678889999999988877766555
Q ss_pred HHhH
Q 032468 101 HLER 104 (140)
Q Consensus 101 HLe~ 104 (140)
.|+.
T Consensus 80 ~l~~ 83 (114)
T 3b0z_B 80 QLKR 83 (114)
Confidence 5543
No 59
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=43.33 E-value=12 Score=21.39 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHh-cCCCcchhh
Q 032468 30 SQDVEDNICKFAK-KGLTPSQIG 51 (140)
Q Consensus 30 ~eeve~~Ivklak-kG~~pSqIG 51 (140)
++|+.+.+-++|+ .|.|.|++=
T Consensus 10 ~~~l~~~Ld~~a~~~g~srS~~i 32 (45)
T 2cpg_A 10 SESVLENLEKMAREMGLSKSAMI 32 (45)
T ss_dssp EHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHHH
Confidence 5788888889987 699988763
No 60
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=43.19 E-value=12 Score=25.89 Aligned_cols=26 Identities=31% Similarity=0.727 Sum_probs=21.9
Q ss_pred HHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhc
Q 032468 96 VAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKT 132 (140)
Q Consensus 96 v~~RkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~ 132 (140)
-+++.|++-|. -|.|||-+.-||+..
T Consensus 12 ~N~k~hi~mn~-----------~edKIhAmNaYYrsV 37 (80)
T 2gsv_A 12 ENLKQHIEMNQ-----------SEDKIHAMNSYYRSV 37 (80)
T ss_dssp HHHHHHHHHCS-----------SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-----------cHhHHHHHHHHHHHH
Confidence 47899999988 477999999999863
No 61
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=42.81 E-value=16 Score=24.20 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.9
Q ss_pred ccCChHHHHHHHHHHHhcCC
Q 032468 26 LKISSQDVEDNICKFAKKGL 45 (140)
Q Consensus 26 ~~~~~eeve~~IvklakkG~ 45 (140)
+.+++|||-+...+|+.||+
T Consensus 35 ygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 35 YGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HCCCHHHHHHHHHHHHHTTS
T ss_pred hCCCHHHHHHHHHHHHHCCC
Confidence 45789999999999999996
No 62
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=42.60 E-value=22 Score=26.46 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=38.5
Q ss_pred CCCCCCccCC----------------hHHHHHHHHHHHhcCCCcchhhhHhhhccC-------CCc----eeeecchhHH
Q 032468 20 RTPPSWLKIS----------------SQDVEDNICKFAKKGLTPSQIGVILRDSHG-------IAQ----VKSVTGSKIL 72 (140)
Q Consensus 20 ~~~P~W~~~~----------------~eeve~~IvklakkG~~pSqIG~~LRD~~G-------Vp~----Vk~vtG~ki~ 72 (140)
-.+|+|.++- -+.+.+.|.++.-.| .|.. .-|+.+|| -|. |-.-|=.+.+
T Consensus 26 i~~P~w~~~vKt~~~ke~~p~~~~~~y~ria~~lr~~i~~g-~~G~--~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL 102 (150)
T 2v7f_A 26 IKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDG-PVGI--ERLRTYYGGRKNRGHAPERFYKAGGSIIRKAL 102 (150)
T ss_dssp CCCCSCGGGCCC------CHHHHTHHHHHHHHHHHHHHHHC-SBCH--HHHHHHHCC----CCCTTSCCCHHHHHHHHHH
T ss_pred CCCcchhhhhcccccccCCCCCcchHHHHHHHHHHHHHHhC-CCCH--HHHHHHHCCCccCCcCCccccccchHHHHHHH
Confidence 3568898871 235667777777788 5555 78999998 221 1223334467
Q ss_pred HHHHHcCCCC
Q 032468 73 RILKAHGLAP 82 (140)
Q Consensus 73 ~ILk~nglap 82 (140)
+.|++.|+--
T Consensus 103 ~~Le~~GlV~ 112 (150)
T 2v7f_A 103 QQLEAAGFVE 112 (150)
T ss_dssp HHHHHTTSEE
T ss_pred HHHHHCCCEE
Confidence 7888888643
No 63
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=42.26 E-value=36 Score=26.77 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=37.6
Q ss_pred HHHHHHHH-hcCCCcchhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 032468 34 EDNICKFA-KKGLTPSQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (140)
Q Consensus 34 e~~Ivkla-kkG~~pSqIG~~LRD~~G---Vp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKA 95 (140)
.+.+.++| +.|.||+|+-+.--=+++ +|.+..-+-.-|.+.++.-++ +++++.+.-|..+
T Consensus 245 ~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~--~L~~~~~~~l~~~ 308 (312)
T 1pyf_A 245 VNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADV--TLSQEDISFIDKL 308 (312)
T ss_dssp HHTTHHHHHHTTSCHHHHHHHHHHHSTTCCCBCCCCSSHHHHHHHHGGGGC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhccC--CCCHHHHHHHHHH
Confidence 35566777 479999999876544554 344444444445555554443 7888877777654
No 64
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=41.77 E-value=5.5 Score=29.55 Aligned_cols=26 Identities=12% Similarity=0.350 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhh
Q 032468 29 SSQDVEDNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~~LR 55 (140)
++++| +.|.+|..+|+|.++|...|-
T Consensus 144 ~~~~v-~~i~~l~~~G~s~~~Ia~~l~ 169 (193)
T 3plo_X 144 TKAEW-EQAGRLLAQGIPRKQVALIYD 169 (193)
T ss_dssp ---------------------------
T ss_pred CHHHH-HHHHHHHHCCCCHHHHHHHHC
Confidence 44544 568888889999999987764
No 65
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=41.28 E-value=25 Score=24.83 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=38.4
Q ss_pred CccCChHHHHHHHHHHHhc--------------CCCcchhhhHhhhccCCCceeeecchhHHHHHH
Q 032468 25 WLKISSQDVEDNICKFAKK--------------GLTPSQIGVILRDSHGIAQVKSVTGSKILRILK 76 (140)
Q Consensus 25 W~~~~~eeve~~Ivklakk--------------G~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk 76 (140)
+...+++++.+.|.+..++ |=||+.+...+-+++ +.|+-|+|.++--+|+
T Consensus 36 ~~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl~GGSp~n~a~~~~~~~--~~v~vi~GvNlpmlle 99 (135)
T 1pdo_A 36 VPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDK--EHYEVIAGVNIPMLVE 99 (135)
T ss_dssp CTTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSHHHHHHHHHHTTC--TTEEEEESCCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHhcc--CCEEEEeCCCHHHHHH
Confidence 4466788888888877654 468899988887765 5899999999765554
No 66
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=41.09 E-value=16 Score=25.24 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhcCCCcchhhhHhhhccC
Q 032468 30 SQDVEDNICKFAKKGLTPSQIGVILRDSHG 59 (140)
Q Consensus 30 ~eeve~~IvklakkG~~pSqIG~~LRD~~G 59 (140)
+.+....|.++-+.|.|..||=-.|.+.||
T Consensus 45 A~dlR~~V~~~l~~G~sd~eI~~~~v~RYG 74 (84)
T 2hl7_A 45 AADLRKQIYGQLQQGKSDGEIVDYMVARYG 74 (84)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 567888999999999999999999999998
No 67
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=40.90 E-value=61 Score=25.59 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=38.4
Q ss_pred HHHHHHHHHhc-----CCCcchhhhHh-hhccCC---CceeeecchhHHHHHHHc-C-CC-CCChhhHHHHHHHHHH
Q 032468 33 VEDNICKFAKK-----GLTPSQIGVIL-RDSHGI---AQVKSVTGSKILRILKAH-G-LA-PEIPEDLYHLIKKAVA 97 (140)
Q Consensus 33 ve~~Ivklakk-----G~~pSqIG~~L-RD~~GV---p~Vk~vtG~ki~~ILk~n-g-la-p~iPEDL~~LikKAv~ 97 (140)
+.+.+.++|++ |.||+|+-+.- ..+-+| ..+-.|.|.+=.+-|++| + +. ++++++.+..|..+..
T Consensus 240 ~~~~l~~ia~~~~~~~g~s~aqvaL~w~l~~~~v~~~~g~~~I~g~~~~~~l~en~~a~~~~~L~~e~~~~l~~~~~ 316 (327)
T 1gve_A 240 GIALVEKALKTTYGPTAPSMISAAVRWMYHHSQLKGTQGDAVILGMSSLEQLEQNLALVEEGPLEPAVVDAFDQAWN 316 (327)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTSSCCGGGTCEEEECCSSHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCHHHHHHHHHHhCCCccccCCCeEEECCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 44667777775 99999998643 333333 113445554433333333 1 22 3688888888877654
No 68
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=40.40 E-value=29 Score=23.46 Aligned_cols=50 Identities=12% Similarity=0.295 Sum_probs=34.8
Q ss_pred cCChHHHHHHHHHHHhcC-----CCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC
Q 032468 27 KISSQDVEDNICKFAKKG-----LTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG-----~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ngla 81 (140)
..|.+.|.+.|.+|-..- +|-.+|-..|.++ ||.-.+. .+.+.=++-|+.
T Consensus 15 ~~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRR----TVaKYRe~l~Ip 69 (76)
T 2ahq_A 15 GLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARR----TVAKYREMLGIP 69 (76)
T ss_dssp SCCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHH----HHHHHHHHTC--
T ss_pred cccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHH----HHHHHHHHcCCC
Confidence 468899999999987654 8888888888776 7775543 344455555443
No 69
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=39.64 E-value=41 Score=22.74 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCCCCCCCCCccCChHHHHH--HHHHHHhcCCCcchhhhHhhh
Q 032468 16 LPYKRTPPSWLKISSQDVED--NICKFAKKGLTPSQIGVILRD 56 (140)
Q Consensus 16 ~P~~~~~P~W~~~~~eeve~--~IvklakkG~~pSqIG~~LRD 56 (140)
.|.++..--.-.++.++|+. .|..|...|+|..+|..+|..
T Consensus 29 ~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 29 NPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp CCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred CCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 34444445556689999885 678888899999999998864
No 70
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=39.58 E-value=23 Score=28.79 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=37.6
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhh-ccCCCceeeecchhHHHHHHHc----CCCCCChhhHHHHHHHHH
Q 032468 33 VEDNICKFAK-KGLTPSQIGVILRD-SHGIAQVKSVTGSKILRILKAH----GLAPEIPEDLYHLIKKAV 96 (140)
Q Consensus 33 ve~~Ivklak-kG~~pSqIG~~LRD-~~GVp~Vk~vtG~ki~~ILk~n----glap~iPEDL~~LikKAv 96 (140)
..+.+.++|+ .|.||+|+-+.--= +-||. -.|.|.+=.+-|++| ++.++++++.+..|.++.
T Consensus 288 ~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v~--~vI~g~~~~~~l~en~~a~~~~~~Ls~e~~~~i~~~~ 355 (367)
T 3lut_A 288 KLKELQAIAERLGCTLPQLAIAWCLRNEGVS--SVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSIL 355 (367)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHTSTTEE--EEEECCSSHHHHHHHHTHHHHGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCc--EEecCCCCHHHHHHHHHhhcccCCCCHHHHHHHHHHH
Confidence 3456677775 79999998765433 33442 235554444444444 233578888888887653
No 71
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Probab=39.48 E-value=29 Score=29.76 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=34.0
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~n 78 (140)
..|.++. +..+.-.++..|.+.|+|..+|-. |.|.+++|+|++.
T Consensus 326 ~~P~gl~-dvs~~p~L~~~L~~rG~se~di~k-------------i~g~N~lRvl~~v 369 (400)
T 3id7_A 326 FTPDGLG-DVSGYPNLIAELLDRGWSQSDLAK-------------LTWKNAVRVLDAA 369 (400)
T ss_dssp CCCBTCS-STTCHHHHHHHHHHTTCCHHHHHH-------------HHTHHHHHHHHHH
T ss_pred CCCCCCC-CHHHHHHHHHHHhhcCCCHHHHHH-------------HHHHhHHHHHHHH
Confidence 4577775 667888999999999999998865 4677777777654
No 72
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=39.20 E-value=67 Score=22.83 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=47.2
Q ss_pred cCChHHHHHHHHHHHhc-----CC-------CcchhhhHhhhccCCCceeeecchhHHHHHHHc-CCCCCChhhHHHHHH
Q 032468 27 KISSQDVEDNICKFAKK-----GL-------TPSQIGVILRDSHGIAQVKSVTGSKILRILKAH-GLAPEIPEDLYHLIK 93 (140)
Q Consensus 27 ~~~~eeve~~Ivklakk-----G~-------~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~n-glap~iPEDL~~Lik 93 (140)
..+++++.+.+.+..++ |+ ||+.++..|.++++. .|+-|+|-++--.|+.- ... ...+|..|+.
T Consensus 41 ~~~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~a~~l~~~~~~-~v~vI~gvnlpmllea~~~~~--~~~~l~el~~ 117 (130)
T 3gx1_A 41 TVEVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSFGNILTEELGI-RTKTVTMVSTPVVLEAMRKAS--LGRGLEDIYQ 117 (130)
T ss_dssp TSCHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTHHHHHHHHHCC-CEEEECSCCHHHHHHHHHHHH--TTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHHhcCC-CEEEEeCCCHHHHHHHHHHhh--cCCCHHHHHH
Confidence 45788888888777653 32 899999999888765 59999999987776642 111 1125566666
Q ss_pred HHHHH
Q 032468 94 KAVAI 98 (140)
Q Consensus 94 KAv~~ 98 (140)
.+...
T Consensus 118 ~~~~~ 122 (130)
T 3gx1_A 118 SCEQL 122 (130)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 73
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=38.43 E-value=58 Score=25.05 Aligned_cols=36 Identities=6% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhc
Q 032468 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDS 57 (140)
Q Consensus 22 ~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~ 57 (140)
.|.=+..+.|+++..|.-|..-|+++.+|+.++.-.
T Consensus 65 ~P~lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~ 100 (270)
T 3m66_A 65 NHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKA 100 (270)
T ss_dssp CTTGGGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CChhhhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 455666677776666666667777777777666543
No 74
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=38.16 E-value=18 Score=27.02 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=20.3
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 032468 27 KISSQDVEDNICKFAKKGLTPS 48 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (140)
++|.|||.++|.-|-.+|..|+
T Consensus 20 ~lt~eqI~kQI~Yll~qGw~p~ 41 (128)
T 1wdd_S 20 PLTVEDLLKQIEYLLRSKWVPC 41 (128)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeee
Confidence 4699999999999999999887
No 75
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=37.62 E-value=88 Score=20.71 Aligned_cols=26 Identities=4% Similarity=0.110 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 28 ISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
++.++ ...|+.|.+.|.|.++|...|
T Consensus 7 ~s~~~-r~~i~~~~~~G~s~~~ia~~l 32 (141)
T 1u78_A 7 LSDTE-RAQLDVMKLLNVSLHEMSRKI 32 (141)
T ss_dssp CCHHH-HHHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH
Confidence 45555 456777889999999999876
No 76
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=37.43 E-value=35 Score=25.34 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 032468 32 DVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (140)
Q Consensus 32 eve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ngl 80 (140)
+|...|.++..+|+|.++|...| || .-..+-++|+..+.
T Consensus 163 ~iv~~i~~~~~~G~s~~~Ia~~l----~i------s~~tv~r~l~~~~~ 201 (209)
T 2r0q_C 163 VIYHRVVEMLEEGQAISKIAKEV----NI------TRQTVYRIKHDNGL 201 (209)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH----TC------CHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH----Cc------CHHHHHHHHhcccc
Confidence 45678889999999999999988 43 34567777776553
No 77
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=37.20 E-value=17 Score=26.33 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.0
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 032468 27 KISSQDVEDNICKFAKKGLTPS 48 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (140)
.+|.|||.++|.-|-.+|..|+
T Consensus 19 ~lt~eqI~kQI~Yll~qGw~p~ 40 (109)
T 1rbl_M 19 PLSDRQIAAQIEYMIEQGFHPL 40 (109)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEE
Confidence 4699999999999999999875
No 78
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=37.04 E-value=20 Score=26.04 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=20.0
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 032468 27 KISSQDVEDNICKFAKKGLTPS 48 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (140)
.+|.|||.++|.-+-.+|..|+
T Consensus 21 ~lt~eqI~kQV~Yll~qGw~p~ 42 (110)
T 1svd_M 21 PMNAERIRAQIKYAIAQGWSPG 42 (110)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeeE
Confidence 4699999999999999999875
No 79
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=36.95 E-value=48 Score=28.75 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHHHHHHH-hcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 032468 32 DVEDNICKFA-KKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (140)
Q Consensus 32 eve~~Ivkla-kkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~i 84 (140)
.|.+.|.+|. ..|++++.|+++.|+.. + ...|.+.|.++|+.-.+
T Consensus 326 ~va~~I~~l~~~~g~~~~diaVL~r~~~---~-----~~~l~~~L~~~gIp~~~ 371 (673)
T 1uaa_A 326 RVTGELIAHHFVNKTQYKDYAILYRGNH---Q-----SRVFEKFLMQNRIPYKI 371 (673)
T ss_dssp HHHHHHHHHHHHHCCCTTTEEEEESSSG---G-----GTTHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhccCCCccCEEEEEechh---h-----HHHHHHHHHHCCCCEEE
Confidence 3556677776 68999999999999853 1 23466777777764433
No 80
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=36.69 E-value=54 Score=27.17 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 032468 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (140)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKA 95 (140)
.++.+++.|..|..-|+++..|+.+|+-.-.|=....-.=+.-...|++-|+.. +++..++.+.
T Consensus 74 l~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~---~~i~~ll~~~ 137 (335)
T 4fp9_B 74 SLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGE---GKLKRVLYCC 137 (335)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTT---TTHHHHHHHC
T ss_pred chhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCH---HHHHHHHHhC
Confidence 477888899999999999999999998873332211111112356788888763 5677666654
No 81
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=36.64 E-value=30 Score=24.62 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCCCCCCCCccCChHHHH--HHHHHHHhcCCCcchhhhHhhh
Q 032468 17 PYKRTPPSWLKISSQDVE--DNICKFAKKGLTPSQIGVILRD 56 (140)
Q Consensus 17 P~~~~~P~W~~~~~eeve--~~IvklakkG~~pSqIG~~LRD 56 (140)
|..+..--+=.|+.++|+ ..|..|...|+|..+|-.+|..
T Consensus 28 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 28 PPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp CCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCccCCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 443444556668999988 4678899999999999998853
No 82
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=35.84 E-value=66 Score=24.93 Aligned_cols=21 Identities=10% Similarity=0.384 Sum_probs=13.4
Q ss_pred hHHHHHHHcCCCCCChhhHHHHHHH
Q 032468 70 KILRILKAHGLAPEIPEDLYHLIKK 94 (140)
Q Consensus 70 ki~~ILk~nglap~iPEDL~~LikK 94 (140)
.|.+.|.-. .+|+++..++..
T Consensus 150 ~V~~~l~l~----~l~~~v~~~l~~ 170 (230)
T 1vz0_A 150 TVANALRLL----QLPPEALEALER 170 (230)
T ss_dssp HHHHHHHGG----GSCHHHHHHHHT
T ss_pred HHHHHHHHH----cCCHHHHHHHHc
Confidence 355555554 578888877754
No 83
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=35.68 E-value=44 Score=26.99 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=38.7
Q ss_pred HHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc-C-C-CCCChhhHHHHHHHHH
Q 032468 32 DVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH-G-L-APEIPEDLYHLIKKAV 96 (140)
Q Consensus 32 eve~~Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~n-g-l-ap~iPEDL~~LikKAv 96 (140)
++.+.+.++|+ .|.||+|+-+.--=+++.. +-.|.|.+=.+-|++| . + ..+++++-+..|..+.
T Consensus 282 ~~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v-~~vI~G~~~~~~l~enl~a~~~~~Ls~ee~~~i~~~~ 349 (353)
T 3erp_A 282 EKVRRLNELAARRGQKLSQMALAWVLRNDNV-TSVLIGASKPSQIEDAVGMLANRRFSAAECAEIDAIL 349 (353)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSCC-CEEEECCSSHHHHHHHHHGGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCCC-cEEEeCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 44556777775 6999999987655555421 1234454433333433 1 2 4688888888887665
No 84
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=35.59 E-value=36 Score=22.75 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=19.1
Q ss_pred Hhhhc-cCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHH
Q 032468 53 ILRDS-HGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKK 94 (140)
Q Consensus 53 ~LRD~-~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikK 94 (140)
+|||+ +|||.- .|-+|.+..|+ ..|.+|.+.-+..
T Consensus 3 ~~r~~~~~ip~~------~I~Riar~~Gv-~rIs~da~~~l~~ 38 (84)
T 2hue_C 3 VLRDNIQGITKP------AIRRLARRGGV-KRISGLIYEETRG 38 (84)
T ss_dssp CGGGGCCSSCHH------HHHHHHHHTTC-CEECTTHHHHHHH
T ss_pred cccccCCCCCHH------HHHHHHHHcCc-hhccHHHHHHHHH
Confidence 35665 454432 46777777775 4455555444333
No 85
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=35.52 E-value=1.2e+02 Score=21.68 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 032468 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (140)
Q Consensus 1 M~rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ngl 80 (140)
||.-|-.---...=.-||......|. +|++|..+.-.-...- .+ . | -.|+|..+..+|...||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~~~W~-it~ee~~~y~~iF~~l--D~-~------d-------G~Isg~elr~~~~~sgL 63 (121)
T 3fia_A 1 MGHHHHHHSHVAQFPTPFGGSLDTWA-ITVEERAKHDQQFHSL--KP-I------S-------GFITGDQARNFFFQSGL 63 (121)
T ss_dssp ---------------CTTSCCTTTSC-CCHHHHHHHHHHHHHT--CC-B------T-------TBEEHHHHHHHHGGGCC
T ss_pred CCccccchhHHHhccccccCCCCCCC-CCHHHHHHHHHHHHHh--CC-C------C-------CeECHHHHHHHHHHcCC
Confidence 44444433333444567888888998 6888876643322221 11 1 1 15899999999999887
Q ss_pred CCCChhhHHHHHHHH
Q 032468 81 APEIPEDLYHLIKKA 95 (140)
Q Consensus 81 ap~iPEDL~~LikKA 95 (140)
. .++|..++.-|
T Consensus 64 p---~~~L~~Iw~la 75 (121)
T 3fia_A 64 P---QPVLAQIWALA 75 (121)
T ss_dssp C---HHHHHHHHHHH
T ss_pred C---HHHHHHHHHHH
Confidence 5 55666665444
No 86
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.85 E-value=54 Score=25.63 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHHHhcCCCc---chhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHH
Q 032468 28 ISSQDVEDNICKFAKKGLTP---SQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHL 102 (140)
Q Consensus 28 ~~~eeve~~IvklakkG~~p---SqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv~~RkHL 102 (140)
.+.||+++.|-+|.++|+.- ..+...+=.++|+|.|-.-. .|-+..-+..|+.+-+-.
T Consensus 138 ~~~ee~~~~i~~l~~~G~~vVVG~~~~~~~A~~~Gl~~vlI~s-----------------~eSI~~Ai~eA~~l~~~~ 198 (225)
T 2pju_A 138 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYS-----------------AATVRQAFSDALDMTRMS 198 (225)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTTSEEEESSC-----------------HHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHcCCcEEEECC-----------------HHHHHHHHHHHHHHHHHH
Confidence 36899999999999999764 12223344456666554322 355555566666664443
No 87
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=34.73 E-value=20 Score=26.42 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.6
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 032468 27 KISSQDVEDNICKFAKKGLTPS 48 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (140)
.+|.|||.++|.-|-.+|..|+
T Consensus 18 ~Lt~eqI~kQV~yll~qGw~~~ 39 (118)
T 3zxw_B 18 PLSDAQIARQIQYAIDQGYHPC 39 (118)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHHhCCCeeE
Confidence 3589999999999999999875
No 88
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=34.70 E-value=38 Score=20.25 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=30.8
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChh
Q 032468 26 LKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPE 86 (140)
Q Consensus 26 ~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPE 86 (140)
-++++++|.+.+..|...| +|+.+-..+.- =+.+.+...+.|+-+.=|-
T Consensus 44 ~~it~~~i~~~~~~l~~~~-~~~t~~~~~~~-----------l~~~~~~a~~~~~i~~nP~ 92 (103)
T 2oxo_A 44 EDITTKEIAAMLNGYIDEG-KAASAKLIRST-----------LSDAFREAIAEGHITTNHV 92 (103)
T ss_dssp GGCCHHHHHHHHHHHHHTT-CHHHHHHHHHH-----------HHHHHHHHHHTTSCSSCTT
T ss_pred hhCCHHHHHHHHHHHHHCC-CHHHHHHHHHH-----------HHHHHHHHHHcCCCCCChH
Confidence 4678999999999998777 67666544321 1234455556666544443
No 89
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A*
Probab=34.47 E-value=78 Score=25.22 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHh-cCCCc-chhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHH
Q 032468 31 QDVEDNICKFAK-KGLTP-SQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV 96 (140)
Q Consensus 31 eeve~~Ivklak-kG~~p-SqIG~~LRD~~G---Vp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv 96 (140)
.++.+.+.++|+ .|.|| +|+-+.--=+++ +|.+..-+-..|.+.++.-+ .+++++-+.-|..+.
T Consensus 245 ~~~~~~l~~ia~~~g~t~~aqvaL~w~l~~~~~~~~I~G~~~~~~l~en~~a~~--~~Ls~ee~~~l~~~~ 313 (319)
T 1ur3_M 245 QPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAET--LKMTRQQWFRIRKAA 313 (319)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHTSTTCCEEEECCSCHHHHHHHHGGGG--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhcc--CCCCHHHHHHHHHHh
Confidence 345567777775 69999 999876544553 23333333334444454434 468888777776653
No 90
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=34.44 E-value=59 Score=28.92 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCC--CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHH
Q 032468 33 VEDNICKFAKKGL--TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKK 94 (140)
Q Consensus 33 ve~~IvklakkG~--~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikK 94 (140)
+++.|.++.++|- -|-+.--.|-|.||.|.= =+..|++|+|+.-+.+ ..+.+|.+
T Consensus 364 l~~~~~~~~~~~~~~l~G~~af~LyDTyGfP~d------Lt~eia~e~g~~vD~~-gF~~~m~~ 420 (465)
T 1yfs_A 364 IQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVD------LIDEIAREKGLGIDLE-GFQCELEE 420 (465)
T ss_dssp HHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHH------HHHHHHHTTTCEECHH-HHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCCHHHHHhhhhccCCCHH------HHHHHHHHcCCeeCHH-HHHHHHHH
Confidence 3444555554454 377888899999999952 1456889999999987 67766654
No 91
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=34.10 E-value=23 Score=26.90 Aligned_cols=22 Identities=9% Similarity=0.344 Sum_probs=20.2
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 032468 27 KISSQDVEDNICKFAKKGLTPS 48 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (140)
.+|.|||.++|.-|-.+|..|+
T Consensus 20 ~lt~eqI~kQI~YlL~qGw~p~ 41 (140)
T 1gk8_I 20 PLTDEQIAAQVDYIVANGWIPC 41 (140)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEee
Confidence 4699999999999999999886
No 92
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=34.08 E-value=39 Score=24.88 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=27.4
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 032468 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 24 ~W~~~~~eeve~~IvklakkG~~pSqIG~~LR 55 (140)
.+.++++++|.+.+..|.++|++|+-|-..+.
T Consensus 43 ~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~~~ 74 (324)
T 1xo0_A 43 KWFPAEPEDVRDYLLYLQARGLAVKTIQQHLG 74 (324)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCcCHHHHHHHHH
Confidence 46788999999999999999999998876543
No 93
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=33.91 E-value=28 Score=26.72 Aligned_cols=37 Identities=24% Similarity=0.490 Sum_probs=31.6
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 032468 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (140)
Q Consensus 43 kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap 82 (140)
-|+|+|-+-..|.+. |.|..-|-.+|.++.++-|-.|
T Consensus 20 agVS~~TVSr~Ln~~---~~vs~~tr~rV~~~~~~lgY~p 56 (344)
T 3kjx_A 20 SGVSEMTVSRVLRNR---GDVSDATRARVLAAAKELGYVP 56 (344)
T ss_dssp HCCCSHHHHHHHTTC---SCCCHHHHHHHHHHHHHHTCCC
T ss_pred HCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCC
Confidence 499999999999876 6788899999999999988654
No 94
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=33.82 E-value=28 Score=22.57 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=19.9
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 28 ISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
++. |....|+.|...|+|.++|...|
T Consensus 18 ~s~-~~r~~i~~~~~~g~s~~~ia~~l 43 (128)
T 1pdn_C 18 LPN-NIRLKIVEMAADGIRPCVISRQL 43 (128)
T ss_dssp CCH-HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH
Confidence 444 45666778888999999998766
No 95
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=33.79 E-value=55 Score=23.26 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=44.3
Q ss_pred cCChHHHHHHHHHHHhc-------------CCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHH
Q 032468 27 KISSQDVEDNICKFAKK-------------GLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 93 (140)
Q Consensus 27 ~~~~eeve~~Ivklakk-------------G~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~Lik 93 (140)
..+++++.+.|.+..++ |=||+.+...+-+.+ +.|+.|+|.++-=+|+.-.. . =.+|-.++.
T Consensus 42 ~~~~~~~~~~i~~~i~~~~~~gvliLtDl~GGSp~n~a~~~~~~~--~~v~vi~GvNlpmlle~~~~-~--~~~l~el~~ 116 (142)
T 3bed_A 42 EDGLSGTQAKLAAILKEAGNVPTLVLADLXGGTPCNVAMMAMGTY--PQLRVVAGLNLAMAIEAAVS-P--VENVDELAA 116 (142)
T ss_dssp TTHHHHHHHHHHHHHHHHCSCCEEEEESSTTSHHHHHHHHHTTTC--TTEEEEESCCHHHHHHHHHC-C--CCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEECCCCHHHHHHHHHhccC--CCEEEEeCCCHHHHHHHHHc-c--CCCHHHHHH
Confidence 44566666666665543 678999988887765 58999999998777665332 1 234555666
Q ss_pred HHHHH
Q 032468 94 KAVAI 98 (140)
Q Consensus 94 KAv~~ 98 (140)
.|+..
T Consensus 117 ~~~~~ 121 (142)
T 3bed_A 117 YLTQI 121 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 96
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=33.68 E-value=70 Score=21.20 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=23.9
Q ss_pred hhHHHHHHHcCCCCCChhhHH------------HHHHHHHHHHHHHh
Q 032468 69 SKILRILKAHGLAPEIPEDLY------------HLIKKAVAIRKHLE 103 (140)
Q Consensus 69 ~ki~~ILk~nglap~iPEDL~------------~LikKAv~~RkHLe 103 (140)
-.|.+|.++.|+ +.++||.. .+++.|+.+-+|=.
T Consensus 10 ~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHak 55 (70)
T 1taf_B 10 ESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAK 55 (70)
T ss_dssp HHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 457889999996 67888754 45566666666643
No 97
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=33.35 E-value=25 Score=25.28 Aligned_cols=25 Identities=16% Similarity=0.481 Sum_probs=18.9
Q ss_pred ccCChHHHHHHHHHHHh-cCCCcchh
Q 032468 26 LKISSQDVEDNICKFAK-KGLTPSQI 50 (140)
Q Consensus 26 ~~~~~eeve~~Ivklak-kG~~pSqI 50 (140)
+..|.+||.+.|.++|. -|++|.++
T Consensus 107 I~vsdeev~~~i~~~A~~y~~~~~~~ 132 (170)
T 2nsa_A 107 ISVNDEELEKEAEELAPFWGISPDRA 132 (170)
T ss_dssp CCCCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHH
Confidence 56788999999999886 36666654
No 98
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=32.46 E-value=53 Score=20.54 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=14.3
Q ss_pred CCccCChHHHHHHHHHHHh-cCCCcchhhhHh
Q 032468 24 SWLKISSQDVEDNICKFAK-KGLTPSQIGVIL 54 (140)
Q Consensus 24 ~W~~~~~eeve~~Ivklak-kG~~pSqIG~~L 54 (140)
.|-......+-+.|.++.+ .|+|..+++..+
T Consensus 10 ~~~~~~~~~~~~~l~~~r~~~glsq~elA~~~ 41 (83)
T 2a6c_A 10 HHHMKMRSQLLIVLQEHLRNSGLTQFKAAELL 41 (83)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCccccHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333334444444444332 466655555443
No 99
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=32.31 E-value=53 Score=30.60 Aligned_cols=43 Identities=30% Similarity=0.394 Sum_probs=34.9
Q ss_pred CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHH
Q 032468 46 TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKK 94 (140)
Q Consensus 46 ~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikK 94 (140)
=|-..-..|-|.||+|.= =+..|++|+|+.-++|++.+.+|.+
T Consensus 440 l~g~~af~LyDTyGfP~d------lt~~ia~e~g~~vd~~~~F~~~m~~ 482 (739)
T 2ztg_A 440 LEKDDLIELYDSHGIPVE------LAVGIAAEKGAEVEMPKDIYAELAK 482 (739)
T ss_dssp CCHHHHHHHHHHHCCCHH------HHHHHHHHTTCBCCCCTTHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCHH------HHHHHHHHcCCeeCCcccHHHHHHH
Confidence 566778889999999952 1456889999999999999987754
No 100
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=32.27 E-value=42 Score=19.34 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 30 SQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 30 ~eeve~~IvklakkG~~pSqIG~~L 54 (140)
+++ ...|..|...|+|..+|...|
T Consensus 18 ~~~-~~~i~~l~~~g~s~~eIA~~l 41 (55)
T 2x48_A 18 DDL-VSVAHELAKMGYTVQQIANAL 41 (55)
T ss_dssp HHH-HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHH-HHHHHHHHHcCCCHHHHHHHH
Confidence 444 456677788999999998765
No 101
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=32.11 E-value=27 Score=22.40 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=27.7
Q ss_pred CCccCChHHHH--HHHHHHH-hcCCCcchhhhHhhhc
Q 032468 24 SWLKISSQDVE--DNICKFA-KKGLTPSQIGVILRDS 57 (140)
Q Consensus 24 ~W~~~~~eeve--~~Ivkla-kkG~~pSqIG~~LRD~ 57 (140)
-.-.++.++|+ ..|..|. ..|+|..+|-.+|...
T Consensus 41 g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 41 NYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp SSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHS
T ss_pred CeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHcc
Confidence 34458999997 4589999 8999999999988764
No 102
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=31.90 E-value=89 Score=23.55 Aligned_cols=36 Identities=25% Similarity=0.164 Sum_probs=26.0
Q ss_pred cchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhHc
Q 032468 67 TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERN 105 (140)
Q Consensus 67 tG~ki~~ILk~nglap~iPEDL~~LikKAv~~RkHLe~n 105 (140)
+-....+.|+.+|+. |+++...|++-+.+++-++..
T Consensus 71 s~~~~~~~L~~~g~t---~~~~~~~ir~~l~~~~l~~~~ 106 (252)
T 3rgc_A 71 TLNAFKANLKSKNQS---YEQFRTNFKKDLEKRKLYEKI 106 (252)
T ss_dssp CHHHHHHHTCC---C---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999986 789999999888888877653
No 103
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.56 E-value=31 Score=20.18 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCCcchhhhHh
Q 032468 34 EDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 34 e~~IvklakkG~~pSqIG~~L 54 (140)
|..|+.|.-.|+|..+|+..|
T Consensus 3 e~~vl~l~~~g~s~~eIA~~l 23 (61)
T 2jpc_A 3 ERQVLKLIDEGYTNHGISEKL 23 (61)
T ss_dssp HHHHHHHHHTSCCSHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 456777778899999999877
No 104
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=31.45 E-value=33 Score=28.36 Aligned_cols=29 Identities=7% Similarity=0.178 Sum_probs=24.6
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~LR 55 (140)
++|.||.++.+-.+..--+||.|||-.|-
T Consensus 12 ~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~ 40 (329)
T 2elc_A 12 VLEEEEAYEVMRALMAGEVSPVRAAGLLV 40 (329)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 57889999999999988899999997663
No 105
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=31.28 E-value=11 Score=27.08 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=37.8
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhhhccC---------------CCceeeecchhHHHHHHHcCCCCCChhhHHHH
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVILRDSHG---------------IAQVKSVTGSKILRILKAHGLAPEIPEDLYHL 91 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~LRD~~G---------------Vp~Vk~vtG~ki~~ILk~nglap~iPEDL~~L 91 (140)
-.++||+++.+-+|++. .||+++-+++= .|.|=.|-++. |-...-.+.+..+
T Consensus 27 v~~~ee~~~~~~~l~~~-----digIIlIte~ia~~i~~~i~~~~~~~~P~IveIPs~~--------g~~~~~~~~i~~~ 93 (115)
T 3aon_B 27 GTTKTEIRKTIDEMAKN-----EYGVIYITEQCANLVPETIERYKGQLTPAIILIPSHQ--------GTLGIGLEEIQNS 93 (115)
T ss_dssp CCSHHHHHHHHHHHHHT-----TEEEEEEEHHHHTTCHHHHHHHHTSSSCEEEEECBTT--------BCCSHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHhc-----CceEEEEeHHHHHHhHHHHHHHhCCCCCEEEEECCCC--------CCCCccHHHHHHH
Confidence 36899999999999985 67887766542 34443333333 1111134568888
Q ss_pred HHHHHHH
Q 032468 92 IKKAVAI 98 (140)
Q Consensus 92 ikKAv~~ 98 (140)
+++|+.+
T Consensus 94 V~~aiG~ 100 (115)
T 3aon_B 94 VEKAVGQ 100 (115)
T ss_dssp HHHHTTC
T ss_pred HHHHhCc
Confidence 9888764
No 106
>1u69_A Hypothetical protein; structural genomics, MSCG, pseudomonas aeruginosa PAO1, HYPO protein, protein structure initiative (PSI); 1.60A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=31.08 E-value=21 Score=26.71 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCc
Q 032468 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ 62 (140)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~ 62 (140)
+.+|+...--+|+..|=+..+-| .|+|.|||.=
T Consensus 86 d~~e~d~~~~~L~~~Gg~v~~~G-~v~D~fGv~W 118 (163)
T 1u69_A 86 DQAETDRLWNAIVDNGGEESACG-WCRDKWGISW 118 (163)
T ss_dssp SHHHHHHHHHHHHHTTCEECSTT-EEECTTSCEE
T ss_pred CHHHHHHHHHHHHhCCCEEEEEE-EEECCCCCEE
Confidence 57889998999986677777888 7999999864
No 107
>2odi_A R.BCNI; endonuclease-DNA complex, restriction enzyme, hydrolas complex; HET: MSE; 1.45A {Brevibacillus centrosporus} PDB: 2odh_A* 2q10_A* 3imb_A
Probab=31.04 E-value=37 Score=27.47 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHHHhcCCC--cc--------hhhhHhhhccCCC
Q 032468 28 ISSQDVEDNICKFAKKGLT--PS--------QIGVILRDSHGIA 61 (140)
Q Consensus 28 ~~~eeve~~IvklakkG~~--pS--------qIG~~LRD~~GVp 61 (140)
++.+|+.+.+-+.+.+|.- || -||..|-|..||+
T Consensus 4 ~~k~~Li~~l~~I~~~G~i~~~s~~~r~~~~gvG~TLE~lLGI~ 47 (238)
T 2odi_A 4 WSKEEVVNKLHEIKNKGYLSVPTDMFRTDDGVVGQILERQFGVQ 47 (238)
T ss_dssp CCHHHHHHHHHHHHHTCSEECCTTTCSSCTTHHHHHHHHHTTCC
T ss_pred eeHHHHHHHHHHHHHCCCeecCcccccCCCCcHHHHHHHHhCCC
Confidence 5889999999999999999 88 4999999999986
No 108
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=30.69 E-value=43 Score=21.67 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=31.5
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChh
Q 032468 26 LKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPE 86 (140)
Q Consensus 26 ~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPE 86 (140)
-++++.+|.+.+..|.++| +|+.+-.++. .=+.+.+...+.|+-+.=|-
T Consensus 48 ~~It~~~i~~~~~~l~~~~-s~~t~~~~~~-----------~l~~~~~~Av~~~~i~~NP~ 96 (118)
T 2kj8_A 48 QDIEPMQLLEVIRRFEDRG-AMERANKARR-----------RCGEVFRYAIVTGRAKYNPA 96 (118)
T ss_dssp TSCCHHHHHHHHHHHHTTT-CHHHHHHHHH-----------HHHHHHHHHHHTTSCSCCSH
T ss_pred HHCCHHHHHHHHHHHHHcC-CHHHHHHHHH-----------HHHHHHHHHHHcCCcccCcH
Confidence 4678888888888888777 7766655442 11235555667787655553
No 109
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=30.49 E-value=36 Score=26.44 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=39.6
Q ss_pred CccCChHHHHHHHHHHH--------hcCCCcchhhhHhhhccCCCceeeecchhHHHHHH
Q 032468 25 WLKISSQDVEDNICKFA--------KKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK 76 (140)
Q Consensus 25 W~~~~~eeve~~Ivkla--------kkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk 76 (140)
-+.+|+|||++.|.++- +++|. .+|.+|-+--..|..|...|+.+-.++.
T Consensus 114 GV~VT~EqI~~~V~~~i~~~k~~i~~~RY~--~~g~ll~~vr~~p~LkWAd~~~vK~~vD 171 (187)
T 3tl4_X 114 GIEITEDQVRNYVMQYIQENKERILTERYK--LVPGIFADVKNLKELKWADPRSFKPIID 171 (187)
T ss_dssp TCCCCHHHHHHHHHHHHHHTHHHHHHHGGG--GHHHHHHHHHTCGGGTTSCTTSHHHHHH
T ss_pred CeEeCHHHHHHHHHHHHHHhHHHHHHhccc--cHHHHHHHHhcccCCCCCCHHHHHHHHH
Confidence 35689999999887765 45777 7899998888889999888888766554
No 110
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=30.35 E-value=39 Score=26.44 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=34.6
Q ss_pred CCCCccC-ChHHHHHHHHHHHhcCCCcchhhhHh---hhccCCCc
Q 032468 22 PPSWLKI-SSQDVEDNICKFAKKGLTPSQIGVIL---RDSHGIAQ 62 (140)
Q Consensus 22 ~P~W~~~-~~eeve~~IvklakkG~~pSqIG~~L---RD~~GVp~ 62 (140)
.|..+++ |.+|+.+.|-+.-..-++|||+-+.+ .|.-||-.
T Consensus 34 l~~FF~~~st~e~~~kv~eii~~~~e~s~~~~Lv~~l~~e~Gi~~ 78 (168)
T 3cz6_A 34 LPLFFHFGSTRQFMDKLHEVISGDYEPSQAEKLVQDLCDETGIRK 78 (168)
T ss_dssp CGGGGGCSSHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHCBCH
T ss_pred HHHHHccCCHHHHHHHHHHHHhcccChhhHHHHHHHHHHHhCccc
Confidence 3788899 99999999999999999999998764 55667653
No 111
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=30.28 E-value=71 Score=23.95 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=28.7
Q ss_pred ChHHHHHHHHHHHhcCCCc---chhhhHhhhccCCCceeeecc
Q 032468 29 SSQDVEDNICKFAKKGLTP---SQIGVILRDSHGIAQVKSVTG 68 (140)
Q Consensus 29 ~~eeve~~IvklakkG~~p---SqIG~~LRD~~GVp~Vk~vtG 68 (140)
+++|+++.|-+|.++|++- ..+...+=.++|+|.|-.-+|
T Consensus 127 ~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A~~~Gl~~vli~sg 169 (196)
T 2q5c_A 127 SEDEITTLISKVKTENIKIVVSGKTVTDEAIKQGLYGETINSG 169 (196)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEECHHHHHHHHHTTCEEEECCCC
T ss_pred CHHHHHHHHHHHHHCCCeEEECCHHHHHHHHHcCCcEEEEecC
Confidence 7899999999999999875 223344555677776665554
No 112
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=30.22 E-value=26 Score=30.74 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=48.5
Q ss_pred ccCChHHHHHHHHHHHhc-CCC---cchhhhHhhhcc---CCCceeeecch--hHHHH-HHHcCCCCCChhhHHHHHHHH
Q 032468 26 LKISSQDVEDNICKFAKK-GLT---PSQIGVILRDSH---GIAQVKSVTGS--KILRI-LKAHGLAPEIPEDLYHLIKKA 95 (140)
Q Consensus 26 ~~~~~eeve~~Ivklakk-G~~---pSqIG~~LRD~~---GVp~Vk~vtG~--ki~~I-Lk~nglap~iPEDL~~LikKA 95 (140)
...|.||+.+.|.+++++ |+- -|-+|+.--.++ +.|.|-..||. |-.+. .+.-|..|+||+.|..|..+-
T Consensus 385 ~~VsDee~~~air~l~~~~G~l~dPhtAva~aaa~~~~~~~~~~V~l~Ta~p~Kf~~~v~~a~~~~~~~P~~l~~l~~~~ 464 (487)
T 3v7n_A 385 GRSTHADRIATIRDVFERYRTMIDTHTADGLKVAREHLRPGVPMVVLETAQPIKFGESIREALGQEPSRPAAFDGLEALP 464 (487)
T ss_dssp ECCCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTSCCTTSCEEEEECBCGGGGHHHHHHHHSSCCCCCGGGTTGGGSC
T ss_pred EEECHHHHHHHHHHHHHHcCEEEChhHHHHHHHHHHhhCCCCcEEEEecCCccccHHHHHHHhCCCCCCChHHHHHhcCc
Confidence 357999999999998874 762 345554322222 67888888876 43443 444588999999998887553
No 113
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=30.10 E-value=58 Score=25.55 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccC------CCceeeecchhHHHHHHH
Q 032468 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHG------IAQVKSVTGSKILRILKA 77 (140)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~~LRD~~G------Vp~Vk~vtG~ki~~ILk~ 77 (140)
+|.+++.++.......|.+|.++-...-.+++ ++.|+.+.|+.-.+++++
T Consensus 232 ~~~~~~~~l~~~v~~~~~~~~~vA~~wl~~~~~~~~~wl~~~~~~~g~~~~~~~~~ 287 (298)
T 2rin_A 232 FSLQMENEIMGKILNDGEDPEKAAAAWLKDNPQSIEPWLSGVATKDGGDGLAAVKA 287 (298)
T ss_dssp CCHHHHHHHHHHHHTTCCCHHHHHHHHHHHSGGGHHHHTTTCBCTTSSBHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHCHHHHHHHhcCCcCCCCCcHHHHHHH
Confidence 45667777777777788999988877666665 566777777776666554
No 114
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=29.85 E-value=29 Score=26.15 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.9
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 032468 27 KISSQDVEDNICKFAKKGLTPS 48 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (140)
++|.|||.++|.-|-.+|..|+
T Consensus 13 ~ltdeqI~kQI~Yll~qGw~p~ 34 (138)
T 1bwv_S 13 DLTDEQIKKQIDYMISKKLAIG 34 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeee
Confidence 4699999999999999999875
No 115
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=29.75 E-value=62 Score=19.27 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=10.0
Q ss_pred HHHHHHHHHHh-cCCCcchhhhH
Q 032468 32 DVEDNICKFAK-KGLTPSQIGVI 53 (140)
Q Consensus 32 eve~~Ivklak-kG~~pSqIG~~ 53 (140)
++-+.|.++.+ +|+|..+++..
T Consensus 7 ~~~~~l~~~r~~~g~sq~~lA~~ 29 (78)
T 3b7h_A 7 FVSEHLMELITQQNLTINRVATL 29 (78)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Confidence 34444444332 45555555443
No 116
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=29.60 E-value=52 Score=26.30 Aligned_cols=34 Identities=32% Similarity=0.269 Sum_probs=24.6
Q ss_pred CCccCChHHHHHHHHHHHhc-CCCcchhhhHhhhccCCC
Q 032468 24 SWLKISSQDVEDNICKFAKK-GLTPSQIGVILRDSHGIA 61 (140)
Q Consensus 24 ~W~~~~~eeve~~Ivklakk-G~~pSqIG~~LRD~~GVp 61 (140)
..+.-|+|||++.|.++.+. |- . |.||=..||||
T Consensus 299 ~~l~~~~e~i~~~v~~~l~~~~~---~-g~I~~~g~gi~ 333 (353)
T 1j93_A 299 GVLFGSKEFITNRINDTVKKAGK---G-KHILNLGHGIK 333 (353)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHCS---S-SEEBCBSSCCC
T ss_pred HHHcCCHHHHHHHHHHHHHHhCC---C-CEEEeCCCCCC
Confidence 34445888888888888776 52 2 77888888887
No 117
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=29.56 E-value=36 Score=28.30 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=25.5
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~LR 55 (140)
++|.||.++.+-.+..--+||.|||-.|-
T Consensus 15 ~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~ 43 (345)
T 1o17_A 15 DLEINEAEELAKAIIRGEVPEILVSAILV 43 (345)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 57999999999999998899999998764
No 118
>2oyy_A Hexameric cytochrome; all helical, unknown function; HET: HEM; 2.50A {Silicibacter pomeroyi}
Probab=29.26 E-value=18 Score=25.10 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.3
Q ss_pred CCCccCChHHHHHHHHHHHhcCCCcc----hhhhHhhhccC
Q 032468 23 PSWLKISSQDVEDNICKFAKKGLTPS----QIGVILRDSHG 59 (140)
Q Consensus 23 P~W~~~~~eeve~~IvklakkG~~pS----qIG~~LRD~~G 59 (140)
|+-..-||||=-++-++||+.|+... +|-..||..|+
T Consensus 7 ptL~T~TPeeG~~LAvklaR~~vk~tQPd~evr~~lR~~Ya 47 (76)
T 2oyy_A 7 PTLVTATPQEGFDLAVKLSRIAVKKTQPDAQVRDTLRAVYE 47 (76)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred hhhhcCChHHHHHHHHHHHHHHHhccCCCHHHHHHHhHHhh
Confidence 44445599999999999999987544 46677777775
No 119
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.13 E-value=32 Score=22.78 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=31.4
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ngla 81 (140)
..+....+|+.|. .|+.|..+|+|..+|+..|-=+. -.| -.-+.++++.-|+.
T Consensus 23 ~~~~~~~Lt~rE~--~Vl~l~~~G~s~~eIA~~L~iS~--~TV----~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 23 SQKEQDVLTPREC--LILQEVEKGFTNQEIADALHLSK--RSI----EYSLTSIFNKLNVG 75 (90)
T ss_dssp ------CCCHHHH--HHHHHHHTTCCHHHHHHHHTCCH--HHH----HHHHHHHHHHTTCS
T ss_pred ccccccCCCHHHH--HHHHHHHcCCCHHHHHHHHCcCH--HHH----HHHHHHHHHHHCCC
Confidence 3344556676665 57777889999999999884321 111 23466677777764
No 120
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=29.09 E-value=25 Score=24.14 Aligned_cols=46 Identities=13% Similarity=-0.020 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 032468 32 DVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (140)
Q Consensus 32 eve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap 82 (140)
+|-+.|.+ ..++|.++|...|... +.+..-|=..+++.|+++|+--
T Consensus 39 ~VL~~L~~--~~~~t~~eL~~~l~~~---~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 39 IVMRVIWS--LGEARVDEIYAQIPQE---LEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp HHHHHHHH--HSCEEHHHHHHTCCGG---GCCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHh--CCCCCHHHHHHHHhcc---cCCCHhhHHHHHHHHHHCCCEE
Confidence 45555554 5688999999888765 2344455566888899999754
No 121
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=28.98 E-value=38 Score=28.00 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=23.2
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~LR 55 (140)
++|.||..+.+-.+..--+|+.|||-.|-
T Consensus 18 ~Lt~eEa~~~~~~il~G~~~d~QiaAfL~ 46 (346)
T 4hkm_A 18 EIFHDEMVDLMRQIMRGEVSDAMVSAILT 46 (346)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 46888888888888888888888887653
No 122
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=28.76 E-value=38 Score=28.56 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=25.7
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~LR 55 (140)
++|.||+++.+-.+..--+||.|||-.|-
T Consensus 39 ~Lt~eEa~~~~~~il~G~~~~~QiaAfL~ 67 (374)
T 1vqu_A 39 SLSRSQAAELMQGWLSEAVPPELSGAILT 67 (374)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47999999999999999999999998764
No 123
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=28.69 E-value=1.7e+02 Score=23.35 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=19.7
Q ss_pred cchhHHHHHHHcCCCCCChhhHHHHHHHHHHHH
Q 032468 67 TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIR 99 (140)
Q Consensus 67 tG~ki~~ILk~nglap~iPEDL~~LikKAv~~R 99 (140)
+-..+.+.|+.+|+. |+++...+++.+-+.
T Consensus 90 ~~~~~~~~L~~~g~t---~~~~~~~~r~~l~~~ 119 (408)
T 1m5y_A 90 TLDQMRSRLAYDGLN---YNTYRNQIRKEMIIS 119 (408)
T ss_dssp CHHHHHHHHHHHTCC---HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC---HHHHHHHHHHHHHHH
Confidence 445577888888875 566666666655443
No 124
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=28.63 E-value=8.5 Score=28.64 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=31.1
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHhhh-----ccCCCceeeecc-hhHHHHHHHcCCCCCChhhHH
Q 032468 25 WLKISSQDVEDNICKFAKKGLTPSQIGVILRD-----SHGIAQVKSVTG-SKILRILKAHGLAPEIPEDLY 89 (140)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~~LRD-----~~GVp~Vk~vtG-~ki~~ILk~nglap~iPEDL~ 89 (140)
|..-.++|..+.+.+.. .|+++..+-..++. .|.+.. ....+ ....+.|.+.|+-+.-|++||
T Consensus 203 ~~~~~p~e~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~l~~~~~~~~~~g~i~~~~~~~~ 271 (272)
T 2czl_A 203 YALAHPEEALDYMRAHA-QELSDEVIWAHVHTYVNAFSLDVGE-EGERAVARLFAEAEARGLAAPSPRPLF 271 (272)
T ss_dssp HHHHSGGGGHHHHHHHC-TTSCHHHHHHHHHHHCSHHHHCCHH-HHHHHHHHHHHHHHHTTSSCCCSSCSB
T ss_pred HHHHCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcccccCCH-HHHHHHHHHHHHHHHcCCCCCCccccc
Confidence 34444455444443321 36777666554432 222111 00001 235667888998887777664
No 125
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=28.55 E-value=32 Score=27.73 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCce--eeecchh---HHHHHHHcCCC
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV--KSVTGSK---ILRILKAHGLA 81 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~V--k~vtG~k---i~~ILk~ngla 81 (140)
..|..+..+++++...+.-|..-|+++++|+.++... |.+ ....... -..+|++-|+.
T Consensus 74 ~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~---P~iLl~s~~~~~l~p~v~fL~~lGl~ 136 (343)
T 3mva_O 74 RYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERS---PESFFRSNNNLNLENNIKFLYSVGLT 136 (343)
T ss_dssp HCGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHC---SHHHHSCCCHHHHHHHHHHHHHTTCC
T ss_pred hCcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHC---CHHHhCCChHhhHHHHHHHHHHhCCC
Confidence 4588899999999999999999999999999987654 331 1111112 24677887765
No 126
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=28.18 E-value=61 Score=27.38 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=29.4
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHH
Q 032468 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKA 77 (140)
Q Consensus 22 ~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ 77 (140)
.|..+. +.++...++..|.+.|+|.++|-. +.|.+.+|+|++
T Consensus 295 ~p~gl~-d~~~~p~l~~~L~~~G~se~~i~k-------------i~g~N~lRvl~~ 336 (369)
T 1itu_A 295 VPEGLE-DVSKYPDLIAELLRRNWTEAEVKG-------------ALADNLLRVFEA 336 (369)
T ss_dssp CCBTCS-STTCHHHHHHHHHHTTCCHHHHHH-------------HHTHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHHHHcCCCHHHHHH-------------HHhHhHHHHHHH
Confidence 454444 566788888888888888887654 556667777765
No 127
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=28.09 E-value=46 Score=21.06 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=22.0
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 26 LKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 26 ~~~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
-++++++|.+.+..|.++| +|+.+-..+
T Consensus 49 ~~it~~~i~~~~~~l~~~~-s~~t~~~~~ 76 (116)
T 2kj5_A 49 EDVKPRHIDDVLKAVMKRG-APSIANDTL 76 (116)
T ss_dssp SSCCHHHHHHHHHHHHHHT-CHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHcc-ChHHHHHHH
Confidence 4578999999999998877 777665544
No 128
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=28.06 E-value=30 Score=20.26 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHh-cCCCcchhh
Q 032468 30 SQDVEDNICKFAK-KGLTPSQIG 51 (140)
Q Consensus 30 ~eeve~~Ivklak-kG~~pSqIG 51 (140)
++|+.+.+..+|+ .|+|.|++=
T Consensus 17 ~~el~~~l~~~a~~~g~s~s~~i 39 (55)
T 2k9i_A 17 PQEWHDRLMEIAKEKNLTLSDVC 39 (55)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHH
Confidence 4566667777775 899988853
No 129
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=28.05 E-value=22 Score=22.37 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=27.8
Q ss_pred hcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 032468 42 KKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (140)
Q Consensus 42 kkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap 82 (140)
..+.|.++|...|... +.+..-|=..+++.|+++|+--
T Consensus 21 ~~~~t~~ei~~~l~~~---~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 21 HSSINTNEVIKELSKT---STWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp SSSEEHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHhhc---CCccHHHHHHHHHHHHHCCCeE
Confidence 4578999999998764 3345556667888899999753
No 130
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=27.83 E-value=53 Score=20.56 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=21.4
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 26 LKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 26 ~~~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
-++++++|.+.+..|. +|++|+.+...+
T Consensus 42 ~~It~~~i~~~~~~l~-~~~s~~t~~~~~ 69 (111)
T 2kiw_A 42 QTIKKHDYQRFVDDIS-AQYSKNYVDSIV 69 (111)
T ss_dssp GGCCHHHHHHHHHHHH-TTSCHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHH-hhhCHHHHHHHH
Confidence 4678899999888886 478888776654
No 131
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.59 E-value=63 Score=20.12 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=30.0
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 032468 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (140)
Q Consensus 43 kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~i 84 (140)
..+|..+|-..|+++. |.|-..|=-..++.|++.|+.-.+
T Consensus 32 ~~~s~~el~~~l~~~~--~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMG--EEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp SSBCHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHhC--CCCCHhhHHHHHHHHHHCCCeEEE
Confidence 3578888888888765 566667777788888888875443
No 132
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=27.31 E-value=39 Score=28.14 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=25.0
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~LR 55 (140)
++|.||.++.+-.+..--+||.|||-.|-
T Consensus 25 ~Lt~eEa~~~~~~il~g~~~~~QiaAfL~ 53 (345)
T 1khd_A 25 SMTQEESHQLFAAIVRGELEDSQLAAALI 53 (345)
T ss_dssp CCCHHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47899999999999988899999997764
No 133
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=27.30 E-value=51 Score=23.76 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=22.4
Q ss_pred cCChHHHHHHHHHHHhcC-CCcchhhhHhhh
Q 032468 27 KISSQDVEDNICKFAKKG-LTPSQIGVILRD 56 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG-~~pSqIG~~LRD 56 (140)
.+|.|||.+.+..|...| .++..||+.+-+
T Consensus 38 ~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~ 68 (103)
T 2kvc_A 38 RLSHDEVKAVANELMRLGDFDQIDIGVVITH 68 (103)
T ss_dssp TSCHHHHHHHHHHHHHHTSSCSSCHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 479999999999999987 455555555443
No 134
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=27.20 E-value=42 Score=25.48 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=22.5
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 032468 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (140)
Q Consensus 43 kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap 82 (140)
-|+|+|-+-..|.+. |.|..-|-.+|.++.++-|-.|
T Consensus 12 agVS~~TVSrvln~~---~~vs~~tr~rV~~aa~~lgY~p 48 (332)
T 2hsg_A 12 ASVSMATVSRVVNGN---PNVKPSTRKKVLETIERLGYRP 48 (332)
T ss_dssp TTSCHHHHHHHHTTC---TTSCHHHHHHHHHHHHHHTCCS
T ss_pred hCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHHHHCCCc
Confidence 366666666666654 3455666666666666666444
No 135
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=26.85 E-value=36 Score=25.74 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.9
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 032468 27 KISSQDVEDNICKFAKKGLTPS 48 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (140)
++|.|||.++|.-|-.+|..|+
T Consensus 13 ~ltd~qI~kQI~YlL~qGw~~~ 34 (138)
T 4f0h_B 13 DLTDEQIKKQIDYMISKKLAIG 34 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEE
Confidence 4699999999999999999875
No 136
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=26.73 E-value=36 Score=20.05 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHh-cCCCcchh
Q 032468 30 SQDVEDNICKFAK-KGLTPSQI 50 (140)
Q Consensus 30 ~eeve~~Ivklak-kG~~pSqI 50 (140)
++|+.+.+..+|+ .|.|.|+|
T Consensus 11 ~~~l~~~l~~lA~~~~rs~s~l 32 (52)
T 2gpe_A 11 DDATRERIKSAATRIDRTPHWL 32 (52)
T ss_dssp EHHHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHH
Confidence 5788888999988 78898886
No 137
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=26.73 E-value=1.5e+02 Score=20.13 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=31.6
Q ss_pred cCChHHHHHHHHHHHh--cCCCcchhhhHhhhcc----CCCceeeecchhHHHHHHHcCC
Q 032468 27 KISSQDVEDNICKFAK--KGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGL 80 (140)
Q Consensus 27 ~~~~eeve~~Ivklak--kG~~pSqIG~~LRD~~----GVp~Vk~vtG~ki~~ILk~ngl 80 (140)
.++++ .++.|.++.+ .+.++.+|-..|.+++ |+. +.-..|.++|+...-
T Consensus 90 ~~~~~-~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~----~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 90 VATPK-VVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTV----PSVSSINRIIRTKVQ 144 (149)
T ss_dssp SSCHH-HHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTS----CCHHHHHHHHHCC--
T ss_pred CCCHH-HHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCC----cCHHHHHHHHHHHhc
Confidence 34544 5556666654 3589999999998876 642 344568888877654
No 138
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.72 E-value=56 Score=21.77 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccC
Q 032468 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHG 59 (140)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~~LRD~~G 59 (140)
-+.++.++.|.+|-.-|++..+.=..||...|
T Consensus 24 ~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~ 55 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAMGFDRTQVEVALAAADD 55 (73)
T ss_dssp CCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTS
T ss_pred cCCcccHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 34556678888888889999999999998765
No 139
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=26.51 E-value=52 Score=24.01 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=26.1
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 25 WLKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
+.++++++|.+.+..|.++|++++.|-..+
T Consensus 44 ~~~i~~~~i~~~~~~l~~~~~s~~t~~~~~ 73 (292)
T 4a8e_A 44 GHSPTARDALRFLAKLKRKGYSTRSLNLVI 73 (292)
T ss_dssp TCCSSHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 567899999999999999999999886554
No 140
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=26.48 E-value=66 Score=21.88 Aligned_cols=48 Identities=13% Similarity=0.255 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 032468 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (140)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap 82 (140)
+.+|..+.+++++++|.+-.-+= ..|.|.+-. +|..+.+.+.+.|+.-
T Consensus 64 ~~~~~~~~i~~~~~~G~~V~~l~-----d~GdP~i~~-~~~~l~~~~~~~gi~v 111 (117)
T 3hh1_A 64 NEERAVRQVIELLEEGSDVALVT-----DAGTPAISD-PGYTMASAAHAAGLPV 111 (117)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEE-----ETTSCGGGS-TTHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHCCCeEEEEe-----cCCcCeEec-cHHHHHHHHHHCCCcE
Confidence 45688889999999997633221 479999966 8999999999988753
No 141
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=26.40 E-value=1.1e+02 Score=18.74 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=23.0
Q ss_pred HHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcC
Q 032468 39 KFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG 79 (140)
Q Consensus 39 klak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ng 79 (140)
+||+ -|++++.|..+.+... +| +.. +.+|.+.-|
T Consensus 16 ~lA~~lgvs~~~is~~e~g~~-~p-~~~-----l~~ia~~l~ 50 (79)
T 3bd1_A 16 ALAASLGVRQSAISNWRARGR-VP-AER-----CIDIERVTN 50 (79)
T ss_dssp HHHHHHTCCHHHHHHHHHHTC-CC-GGG-----HHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHCCC-CC-HHH-----HHHHHHHHC
Confidence 4443 4899999998888776 77 543 555555555
No 142
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.38 E-value=53 Score=22.88 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=13.4
Q ss_pred CCCCCccCChHHHHHHHHHHH
Q 032468 21 TPPSWLKISSQDVEDNICKFA 41 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~Ivkla 41 (140)
.+|.=+-..+.||...|-++|
T Consensus 12 ~p~~~ii~PPpdir~iIdktA 32 (90)
T 2e5z_A 12 APVAAIIPPPPDVQPVIDKLA 32 (90)
T ss_dssp CCCCSCCCCCTTTHHHHHHHH
T ss_pred CCCCCccCCCHHHHHHHHHHH
Confidence 444455556667777777765
No 143
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=26.28 E-value=1.6e+02 Score=20.08 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCCcchhhhHh
Q 032468 31 QDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 31 eeve~~IvklakkG~~pSqIG~~L 54 (140)
.|....|+.+...|++.++|...|
T Consensus 35 ~e~r~~iv~~~~~G~s~~~iA~~l 58 (149)
T 1k78_A 35 DVVRQRIVELAHQGVRPCDISRQL 58 (149)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 455677888888999999998866
No 144
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=26.17 E-value=33 Score=25.92 Aligned_cols=22 Identities=5% Similarity=0.243 Sum_probs=19.8
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 032468 27 KISSQDVEDNICKFAKKGLTPS 48 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (140)
++|.|||.++|.-|-.+|..|+
T Consensus 13 ~ltdeqI~kQI~YlL~qGw~p~ 34 (139)
T 1bxn_I 13 ELTDEQITKQLEYCLNQGWAVG 34 (139)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeEE
Confidence 4699999999999999999765
No 145
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=26.03 E-value=1.5e+02 Score=20.60 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=39.5
Q ss_pred ChhhHHHHHHHHHHHHHHHhHcCCcccchhH-HHHHHHHHHHHHHHHHh
Q 032468 84 IPEDLYHLIKKAVAIRKHLERNRKDKDSKFR-LILVESRIHRLARYYKK 131 (140)
Q Consensus 84 iPEDL~~LikKAv~~RkHLe~n~kD~~~k~~-L~LiESkI~RL~rYYk~ 131 (140)
-++.|..|-.++..+|=.|.++=.+..+|+. |.-.-+||--.+++|-+
T Consensus 31 ~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~ 79 (91)
T 2pjw_V 31 EDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDR 79 (91)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999988886 34445788888888864
No 146
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=26.03 E-value=48 Score=21.31 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCCcchhhhHhhh
Q 032468 33 VEDNICKFAKKGLTPSQIGVILRD 56 (140)
Q Consensus 33 ve~~IvklakkG~~pSqIG~~LRD 56 (140)
+++.|.=|-.||+|..+|-..|+-
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 567888899999999999888763
No 147
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp}
Probab=25.90 E-value=11 Score=28.57 Aligned_cols=42 Identities=10% Similarity=0.336 Sum_probs=36.5
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeec
Q 032468 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVT 67 (140)
Q Consensus 24 ~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vt 67 (140)
+|+....-|..|.+-+|-+.++-|+-|.+. |.-|+|+|-.+.
T Consensus 9 ~~~~~~~~~~~~~~r~l~~~~v~~~~LATA--dkdG~PNVa~~~ 50 (148)
T 3in6_A 9 EWLEIMDRELLEKARSLINANYISTTLSTV--DRNYEVNIAVIS 50 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSEEEEEE--CTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHhCCcceEEEEEc--CCCCCccEEEEe
Confidence 699999999999999999999888888775 788999998654
No 148
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=25.85 E-value=1.1e+02 Score=24.74 Aligned_cols=63 Identities=8% Similarity=-0.012 Sum_probs=36.1
Q ss_pred HHHHHHHHHhc-----CCCcchhhhHhh-hccCC---Cceeeecchh----HHHHHHHcCCCCCChhhHHHHHHHHH
Q 032468 33 VEDNICKFAKK-----GLTPSQIGVILR-DSHGI---AQVKSVTGSK----ILRILKAHGLAPEIPEDLYHLIKKAV 96 (140)
Q Consensus 33 ve~~Ivklakk-----G~~pSqIG~~LR-D~~GV---p~Vk~vtG~k----i~~ILk~nglap~iPEDL~~LikKAv 96 (140)
..+.+.++|++ |.||+|+-+.-- .+-+| ..+-.|.|.+ |.+.|+.-.. ++++++.+..|..+.
T Consensus 273 ~~~~l~~ia~~~~~~~g~s~aqvaL~w~l~~~~v~~~~g~~vI~G~~~~~~l~enl~a~~~-~~L~~e~~~~l~~~~ 348 (360)
T 2bp1_A 273 AIALVEKALQAAYGASAPSVTSAALRWMYHHSQLQGAHGDAVILGMSSLEQLEQNLAATEE-GPLEPAVVDAFNQAW 348 (360)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSSCCGGGTCEEEECCSSHHHHHHHHHHHTS-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCcccccCCCeEEECCCCHHHHHHHHHhcCC-CCCCHHHHHHHHHHH
Confidence 34566667765 999999976433 33333 1123455544 4444443222 368888888777664
No 149
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation, viral protein; 1.60A {Rift valley fever virus} PDB: 3ouo_A 3lyf_A 4h5m_A 4h5o_A 4h5p_A 4h5q_A 4h6f_A 4h6g_A
Probab=25.77 E-value=1.4e+02 Score=24.44 Aligned_cols=82 Identities=17% Similarity=0.288 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhHcCC
Q 032468 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 107 (140)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv~~RkHLe~n~k 107 (140)
.+..+|++.+-+++=+|+.|. .|.++|++.| .-+-=+|+..|| -|+= ..-|+-
T Consensus 16 ~d~~~i~~~v~~faYqGFDa~---------------------~ii~~lke~G-g~~w~~D~k~mI----Vl~L-tRGNk~ 68 (245)
T 3ov9_A 16 VDRNEIEQWVREFAYQGFDAR---------------------RVIELLKQYG-GADWEKDAKKMI----VLAL-TRGNKP 68 (245)
T ss_dssp CCHHHHHHHHHHHSBCSCCHH---------------------HHHHHHHHHH-GGGHHHHHHHHH----HHHH-HTCSCH
T ss_pred ccHHHHHHHHHHHHhcCCCHH---------------------HHHHHHHHHc-chhHHHHHHHHH----HHHH-hhCCCH
Confidence 477899999999999999995 4566777777 333445554444 3321 112222
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCCC
Q 032468 108 DKDSKFRLILVESRIHRLARYYKKTKKLP 136 (140)
Q Consensus 108 D~~~k~~L~LiESkI~RL~rYYk~~~~LP 136 (140)
++-.|.--.---..+.+|+.-|+=+-.-|
T Consensus 69 ~km~kkms~eGk~~v~~Li~~Y~L~~~~~ 97 (245)
T 3ov9_A 69 RRMMMKMSKEGKATVEALINKYKLKEGNP 97 (245)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHTCCSSSC
T ss_pred HHHHHHhhHhHHHHHHHHHHHhCeecCCC
Confidence 22222223333346777777776544433
No 150
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=25.65 E-value=47 Score=26.07 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=19.9
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCC
Q 032468 21 TPPSWLKISSQDVEDNICKFAKKGLT 46 (140)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~ 46 (140)
..+.|...+.+|+.+.|++++++|..
T Consensus 69 k~~~~~~~~~~~i~~~l~~~~~~G~~ 94 (280)
T 1s4d_A 69 KRGGKPSPKQRDISLRLVELARAGNR 94 (280)
T ss_dssp CCC--CCCCHHHHHHHHHHHHHTTCC
T ss_pred ccccccccCHHHHHHHHHHHHhCCCe
Confidence 34567778899999999999999854
No 151
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=25.35 E-value=15 Score=26.98 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcC
Q 032468 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG 79 (140)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ng 79 (140)
++++ .+.|.+|..+|+|.++|...| || .-..+-++|++.+
T Consensus 144 ~~~~-~~~i~~l~~~G~s~~~Ia~~l----~v------s~~Tvyr~l~~~~ 183 (193)
T 3uj3_X 144 TKAE-WEQAGRLLAQGIPRKQVALIY----DV------ALSTLYKKHPAKR 183 (193)
T ss_dssp ---------------------------------------------------
T ss_pred CHHH-HHHHHHHHHcCCCHHHHHHHH----Cc------CHHHHHHHHHHhh
Confidence 4444 456888999999999999888 33 2334566777766
No 152
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.31 E-value=47 Score=23.98 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=30.5
Q ss_pred CCCCCCCCCccCChHHHH--HHHHHHHhcCCCcchhhhHhh
Q 032468 17 PYKRTPPSWLKISSQDVE--DNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 17 P~~~~~P~W~~~~~eeve--~~IvklakkG~~pSqIG~~LR 55 (140)
|..+..--.=.|+.++|+ ..|..|...|+|-.+|..+|.
T Consensus 44 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 44 FLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp TCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444444556667999988 568899999999999999886
No 153
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=24.86 E-value=80 Score=18.47 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=12.5
Q ss_pred HHHHHHHHHH-hcCCCcchhhhHh
Q 032468 32 DVEDNICKFA-KKGLTPSQIGVIL 54 (140)
Q Consensus 32 eve~~Ivkla-kkG~~pSqIG~~L 54 (140)
.+-+.|..+. .+|+|..+++..+
T Consensus 13 ~~~~~l~~~r~~~g~s~~~lA~~~ 36 (74)
T 1y7y_A 13 KFGQRLRELRTAKGLSQETLAFLS 36 (74)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3444444443 3677777766555
No 154
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.46 E-value=89 Score=20.20 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=21.8
Q ss_pred CCCCcCCCCCCCCCCCccCChHHHHHHH
Q 032468 10 GISASALPYKRTPPSWLKISSQDVEDNI 37 (140)
Q Consensus 10 G~S~S~~P~~~~~P~W~~~~~eeve~~I 37 (140)
|.|+|..+.+..+|.+..-+..+--..+
T Consensus 1 ~ssgs~~~~~~~~~~~~~~~~~~~~~~~ 28 (96)
T 2ctd_A 1 GSSGSSGRIRKEPPVYAAGSLEEQWYLE 28 (96)
T ss_dssp CCCCCCCCCCCCCCSSCTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHH
Confidence 6789999999999999877766654444
No 155
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=24.23 E-value=64 Score=25.96 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHH
Q 032468 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVA 97 (140)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv~ 97 (140)
.++++....+.=|...|++.++|+.++...=.+=....-+=....+.|++-|+. ++|+..+|.++=.
T Consensus 46 ~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s---~~~i~~il~~~P~ 112 (343)
T 3mva_O 46 RMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTS---DLEIVNILERSPE 112 (343)
T ss_dssp CSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSC---HHHHHHHHHHCSH
T ss_pred cCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHCCH
Confidence 355566666666788999999999988776322211111122245677777765 4666666655543
No 156
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=24.17 E-value=44 Score=21.55 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=20.3
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhH
Q 032468 25 WLKISSQDVEDNICKFAKKGLTPSQIGVI 53 (140)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~~ 53 (140)
.-++++++|.+.+..|.++| +|+.|-.+
T Consensus 48 l~~It~~~i~~~~~~l~~~~-s~~t~~~~ 75 (121)
T 2kkv_A 48 IRQLKTSHLLAPIKEVDTSG-KHDVAQRL 75 (121)
T ss_dssp TTCCCSGGGHHHHHHHHHTT-THHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 34678888888888888776 66665443
No 157
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=24.15 E-value=51 Score=28.60 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=21.7
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~LR 55 (140)
++|.||+++.+-.+..--+|+.|||-.|-
T Consensus 15 ~Lt~eEa~~~~~~i~~G~~~d~QiaAfL~ 43 (423)
T 2dsj_A 15 KHRREDLEAFLLGYLRDEVPDYQVSAWLM 43 (423)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 46778888888887777788888876653
No 158
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=24.07 E-value=59 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.428 Sum_probs=20.1
Q ss_pred cCChHHHHHHHHHHHhcC-CCcchhhhH
Q 032468 27 KISSQDVEDNICKFAKKG-LTPSQIGVI 53 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG-~~pSqIG~~ 53 (140)
.+|.|||.+.+..|...| .++..||+.
T Consensus 40 ~Ltdeev~~Va~~L~~~~~i~~~dI~~~ 67 (112)
T 2lky_A 40 RLTNDEIKAIAEDLEKRAHFDHIDIGVL 67 (112)
T ss_dssp TCCHHHHHHHHHHHHHHCCCSCCCSHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 479999999999999886 344444444
No 159
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=23.89 E-value=52 Score=20.50 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=22.0
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 25 WLKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
--++++++|.+.+..|+ +|++|+.|...+
T Consensus 44 l~~it~~~i~~~~~~l~-~~~s~~t~~~~~ 72 (110)
T 2khq_A 44 LKDIKRTEYQKFLNEYG-LTHSYETIRKLN 72 (110)
T ss_dssp GGGCCHHHHHHHHHHHH-HHSCHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence 34678999999998886 478888776655
No 160
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=23.84 E-value=88 Score=22.43 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHH--cCCCCCChhhHHHHHH-HHHHHHH-HHhHcCCccc
Q 032468 35 DNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKA--HGLAPEIPEDLYHLIK-KAVAIRK-HLERNRKDKD 110 (140)
Q Consensus 35 ~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~--nglap~iPEDL~~Lik-KAv~~Rk-HLe~n~kD~~ 110 (140)
+.+.+|+. .||..|.. +|||.+..+ .+...|-+ .|..--||-....... +-..|+. +--.|-++..
T Consensus 30 e~L~el~~------~ig~~L~~-~Gi~~~~~i---e~~~~L~~~~gG~~iYIPk~~~~~~~~Rn~~I~~~f~G~n~~eLA 99 (129)
T 1rr7_A 30 ALLAELND------LLRGELSR-LGVDPAHSL---EIVVAICKHLGGGQVYIPRGQALDSLIRDLRIWNDFNGRNVSELT 99 (129)
T ss_dssp HHHHHHHH------HHHHHHHH-TSSCTTSHH---HHHHHHHHHHCSSCCCCCCSHHHHHHHHHHHHHHHCCSSCHHHHH
T ss_pred HHHHHHHH------HHHHHHHH-cCCCHHHHH---HHHHHHHHHHCCeeEEeeCCchHHHHHHHHHHHHHhCCCCHHHHH
Confidence 55566654 56777876 799996665 44444444 4788888876653321 1122222 2222333333
Q ss_pred chhHHHHHHHHHHHHHHHHHh
Q 032468 111 SKFRLILVESRIHRLARYYKK 131 (140)
Q Consensus 111 ~k~~L~LiESkI~RL~rYYk~ 131 (140)
.|| -|.|..|+|+++=-++
T Consensus 100 rkY--gLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 100 TRY--GVTFNTVYKAIRRMRR 118 (129)
T ss_dssp HHH--TCCHHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHH
Confidence 344 4678899999875443
No 161
>3k3w_A Penicillin G acylase; hydrolase; 3.31A {Alcaligenes faecalis} PDB: 3ml0_A
Probab=23.83 E-value=15 Score=28.70 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=13.9
Q ss_pred hHhhhccCCCceeeecchh
Q 032468 52 VILRDSHGIAQVKSVTGSK 70 (140)
Q Consensus 52 ~~LRD~~GVp~Vk~vtG~k 70 (140)
.|.||.||||-|..-+=..
T Consensus 6 ~I~RD~~GVPHI~A~~~~d 24 (196)
T 3k3w_A 6 EVMRDSYGVPHVFADSHYG 24 (196)
T ss_dssp EEEECTTCCEEEECSSHHH
T ss_pred EEEECCCCCceEEeCChhh
Confidence 3689999999987544333
No 162
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=23.72 E-value=45 Score=20.88 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHh-cCCCcchh
Q 032468 30 SQDVEDNICKFAK-KGLTPSQI 50 (140)
Q Consensus 30 ~eeve~~Ivklak-kG~~pSqI 50 (140)
++|+.+.+..||+ .|-|+|.|
T Consensus 11 ~~el~~rL~~lA~~~~rs~s~l 32 (58)
T 2ay0_A 11 DDATRERIKSAATRIDRTPHWL 32 (58)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHH
Confidence 5788999999998 89999987
No 163
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=23.64 E-value=1.3e+02 Score=18.29 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=6.4
Q ss_pred CCCcchhhhHhhhc
Q 032468 44 GLTPSQIGVILRDS 57 (140)
Q Consensus 44 G~~pSqIG~~LRD~ 57 (140)
|++++.|..+.+..
T Consensus 36 gvs~~~is~~e~g~ 49 (80)
T 3kz3_A 36 GMGQSAVAALFNGI 49 (80)
T ss_dssp TSCHHHHHHHHTTS
T ss_pred CcCHHHHHHHHcCC
Confidence 44444444444443
No 164
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=23.57 E-value=58 Score=26.19 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=25.7
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCC
Q 032468 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIA 61 (140)
Q Consensus 24 ~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp 61 (140)
..+.-|+|||++.|.++.+.|.. . =|.||=..||||
T Consensus 296 ~~l~~t~e~I~~~v~~~l~~~~~-~-~g~Il~~gcgi~ 331 (359)
T 2inf_A 296 SILLAPWEVIEQKTKEILDQGME-S-DGFIFNLGHGVF 331 (359)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHTT-S-SCEEBCBSSCCC
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC-C-CCeEEeCCCCCC
Confidence 34555899999999998876421 1 177888888887
No 165
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=23.32 E-value=69 Score=20.91 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=18.7
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhH
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVI 53 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~ 53 (140)
++++.+|.+.+.+|.+.| +|+.+..+
T Consensus 54 ~It~~~i~~~l~~l~~~~-~~~t~~~~ 79 (118)
T 2kj9_A 54 ELDTGDLLVPIKKIEKLG-YLEIAMRV 79 (118)
T ss_dssp GCCHHHHHHHHHHHHTTT-CHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 568888888888887766 56655443
No 166
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.24 E-value=1.4e+02 Score=20.16 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=26.9
Q ss_pred CCCCcCCCCCC---CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhcc
Q 032468 10 GISASALPYKR---TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH 58 (140)
Q Consensus 10 G~S~S~~P~~~---~~P~W~~~~~eeve~~IvklakkG~~pSqIG~~LRD~~ 58 (140)
|.|+|..+.+. ...+|++ ++.|.+|..-|++..+.=..|+-..
T Consensus 1 ~~~~~~~~~k~~~~~~~~~~n------~~~I~qL~~MGF~~~~a~~AL~~~n 46 (85)
T 2dkl_A 1 GSSGSSGGMKTSGKQDEAWIM------SRLIKQLTDMGFPREPAEEALKSNN 46 (85)
T ss_dssp CCCCCCCCCCCCCCCCHHHHH------HHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCCcCccCCCCCCCccccC------HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 45666555443 2334532 5666677777999988877776444
No 167
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=22.92 E-value=21 Score=30.30 Aligned_cols=53 Identities=13% Similarity=0.427 Sum_probs=30.5
Q ss_pred ccCChHHHHHHHHHHHhc-CCCcchhhhHhhhccCC-Ccee-eecchhHHHHHHHc
Q 032468 26 LKISSQDVEDNICKFAKK-GLTPSQIGVILRDSHGI-AQVK-SVTGSKILRILKAH 78 (140)
Q Consensus 26 ~~~~~eeve~~Ivklakk-G~~pSqIG~~LRD~~GV-p~Vk-~vtG~ki~~ILk~n 78 (140)
++.|.+||.+.|.++|.. |++|.++-..+..+-+. +.++ .+.-.|+...|.++
T Consensus 349 I~vt~eev~~~i~~~A~~yg~~~~~~~~~~~~~~~~~~~l~~~i~~~Kv~d~l~e~ 404 (433)
T 3gty_X 349 ISVNDEELEKEAEELAPFWGISPDRAKSLVKARQDLREELRWAILKRKVLDLLLQE 404 (433)
T ss_dssp CCCCHHHHHHHHTTSTTTTTSCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 567889999999888873 66676655555433211 2222 34444455555443
No 168
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=22.84 E-value=87 Score=20.59 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=32.3
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap 82 (140)
.+|+.|..=+.+=....|.|.++|+..|....|+ ..-|=..+.+-|+++|+--
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~ 59 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEV---SDKTIRTLITRLYKKEIIK 59 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHCCceE
Confidence 4555554322222224678999999999765443 2334445788889999643
No 169
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=22.82 E-value=57 Score=28.30 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=22.2
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
++|.||+.+.+-.+..--+|+.|||-.|
T Consensus 16 ~Lt~eEa~~~~~~i~~G~~sd~QiaAfL 43 (440)
T 2tpt_A 16 ALSDEEIRFFINGIRDNTISEGQIAALA 43 (440)
T ss_dssp CCCHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4688888888888888888888888665
No 170
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=22.82 E-value=67 Score=23.15 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHH----HhcCCCcchhhhHhhhccCC
Q 032468 29 SSQDVEDNICKF----AKKGLTPSQIGVILRDSHGI 60 (140)
Q Consensus 29 ~~eeve~~Ivkl----akkG~~pSqIG~~LRD~~GV 60 (140)
+.||+++.+... -+-|+|-++||..|-.-||-
T Consensus 2 ~~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~ 37 (151)
T 3d1n_I 2 NMEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGP 37 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSC
T ss_pred CHHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCC
Confidence 678887776654 34799999999999888874
No 171
>1fm2_A Glutaryl 7-aminocephalosporanic acid acylase; cephalosporin acylase, antibiotics, penicillin acylase, N- terminal hydrolase; 2.00A {Brevundimonas diminuta} SCOP: d.153.1.2 PDB: 1ghd_A 3jtq_A 3jtr_A 2adv_A 2ae3_A 2ae5_A 2ae4_A 1or0_A 1jw0_A 1jvz_A 1gk1_A 1gk0_A
Probab=22.70 E-value=15 Score=28.00 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=13.5
Q ss_pred hHhhhccCCCceeeecc
Q 032468 52 VILRDSHGIAQVKSVTG 68 (140)
Q Consensus 52 ~~LRD~~GVp~Vk~vtG 68 (140)
.|.||.||||-|.--+=
T Consensus 19 ~I~RD~~GVPHI~A~~~ 35 (169)
T 1fm2_A 19 EILWDGYGVPHIYGVDA 35 (169)
T ss_dssp EEEEETTSCEEEECSSH
T ss_pred EEEECCCCceEEEeCCH
Confidence 57899999999875443
No 172
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.69 E-value=1.3e+02 Score=21.49 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=30.1
Q ss_pred CCCCCCCCCccCChHHHH--HHHHHHHhcCCCcchhhhHhh
Q 032468 17 PYKRTPPSWLKISSQDVE--DNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 17 P~~~~~P~W~~~~~eeve--~~IvklakkG~~pSqIG~~LR 55 (140)
|..+..--.=.|+.++|+ ..|..|...|+|-.+|..+|.
T Consensus 30 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 30 PIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLA 70 (142)
T ss_dssp CCCBCTTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcCCCCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 434444455667899888 578899999999999998875
No 173
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A*
Probab=22.67 E-value=96 Score=24.48 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=38.6
Q ss_pred HHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcC--CCCCChhhHHHHHHHH
Q 032468 36 NICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG--LAPEIPEDLYHLIKKA 95 (140)
Q Consensus 36 ~Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ng--lap~iPEDL~~LikKA 95 (140)
.+.++|+ .|.||+|+-+.---++| +-.|.|.+=.+-|++|= +..+++++-+..|..+
T Consensus 244 ~l~~iA~~~g~t~aqvaL~w~l~~~---~~vI~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~ 303 (322)
T 1mi3_A 244 TIKAIAAKYNKTPAEVLLRWAAQRG---IAVIPKSNLPERLVQNRSFNTFDLTKEDFEEIAKL 303 (322)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTT---CEECCCCCSHHHHHHTTSCCSSCCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC---CEEEcCCCCHHHHHHHHhhcCCCcCHHHHHHHHhh
Confidence 3445554 59999999887666676 45677766566666663 2357888887776544
No 174
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=22.64 E-value=61 Score=27.79 Aligned_cols=36 Identities=14% Similarity=0.355 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHH
Q 032468 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKA 77 (140)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ 77 (140)
+..+...++..|.+.|+|.++|- .|.|.+++|+|++
T Consensus 371 dvs~~p~l~~~L~~rG~se~di~-------------ki~ggN~lRVl~~ 406 (417)
T 3b40_A 371 DVSEIRNVTAELITRGYSDADIA-------------KLWGGNFLRAWGE 406 (417)
T ss_dssp SGGGHHHHHHHHHHHTCCHHHHH-------------HHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCHHHHH-------------HHHHHHHHHHHHH
Confidence 44455555555555555555543 3445556666554
No 175
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=22.64 E-value=48 Score=22.76 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhcCCCcc
Q 032468 30 SQDVEDNICKFAKKGLTPS 48 (140)
Q Consensus 30 ~eeve~~IvklakkG~~pS 48 (140)
++.||+.++.||..|--++
T Consensus 36 A~~VE~~Li~lAq~Gqi~~ 54 (80)
T 1eij_A 36 VEQIELQLIQLAQMGRVRS 54 (80)
T ss_dssp HHHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 5789999999999994333
No 176
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=22.63 E-value=23 Score=32.99 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHhcCC---CcchhhhHhhhccCCCceee
Q 032468 30 SQDVEDNICKFAKKGL---TPSQIGVILRDSHGIAQVKS 65 (140)
Q Consensus 30 ~eeve~~IvklakkG~---~pSqIG~~LRD~~GVp~Vk~ 65 (140)
-+++++.|.+++-.-+ ||.|+|.+|-|..|+|..|.
T Consensus 467 ~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lglp~~kk 505 (832)
T 1bgx_T 467 IARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGK 505 (832)
T ss_dssp HHHHHHHHHHSSSSCCCCSCHHHHTTTTTTSCCCCCCCS
T ss_pred HHHHHHHHHHHhCCCcCCCCHHHHHHHHHHhcCCCCccc
Confidence 3566777777764322 79999999999999996553
No 177
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=22.56 E-value=58 Score=22.04 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCcchhhhHhhhc
Q 032468 33 VEDNICKFAKKGLTPSQIGVILRDS 57 (140)
Q Consensus 33 ve~~IvklakkG~~pSqIG~~LRD~ 57 (140)
+++.|.=|-.||+|..+|-..|+..
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 5678888999999999999988863
No 178
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=22.50 E-value=67 Score=24.16 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=37.4
Q ss_pred cCChHHHHHHHHHHHhcCCCc--chhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCCh
Q 032468 27 KISSQDVEDNICKFAKKGLTP--SQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 85 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~p--SqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~iP 85 (140)
..+.+++-..|..|...|.++ ++|...| || ..-|=..+.+-|++.|+---.|
T Consensus 5 t~~~e~~L~~L~~l~~~~~~~~~~~La~~l----~v---s~~tvs~~l~~Le~~GlV~r~~ 58 (230)
T 1fx7_A 5 VDTTEMYLRTIYDLEEEGVTPLRARIAERL----DQ---SGPTVSQTVSRMERDGLLRVAG 58 (230)
T ss_dssp SSHHHHHHHHHHHHHHHTSCCCHHHHHHHH----TC---CHHHHHHHHHHHHHTTSEEECT
T ss_pred CHHHHHHHHHHHHHhhcCCCCcHHHHHHHH----Cc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 446788888899998889999 8888776 33 3334445778889999765444
No 179
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=22.46 E-value=47 Score=25.67 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=33.9
Q ss_pred HHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC-CC
Q 032468 37 ICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA-PE 83 (140)
Q Consensus 37 Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ngla-p~ 83 (140)
|.+.|+ -|+|+|-+-..|.+. |.|..-|=.+|.++.++-|-. |.
T Consensus 12 i~diA~~aGVS~~TVSrvLn~~---~~Vs~~tr~rV~~~a~~lgY~~pn 57 (366)
T 3h5t_A 12 LASIAAKLGISRTTVSNAYNRP---EQLSAELRQRILDTAEDMGYLGPD 57 (366)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCG---GGSCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHhCCCHHHHHHHHCCC---CCCCHHHHHHHHHHHHHhCCCCCC
Confidence 344444 599999999999875 578889999999999999986 53
No 180
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1
Probab=22.31 E-value=48 Score=26.46 Aligned_cols=64 Identities=14% Similarity=0.002 Sum_probs=38.9
Q ss_pred HHHHHHHHHHh-cCC-CcchhhhHhhhccCCCceeeecchhHHHHHHHcC--CCCCChhhHHHHHHHHH
Q 032468 32 DVEDNICKFAK-KGL-TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG--LAPEIPEDLYHLIKKAV 96 (140)
Q Consensus 32 eve~~Ivklak-kG~-~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ng--lap~iPEDL~~LikKAv 96 (140)
++.+.+.++|+ .|. ||+|+-+.--=+++-. +-.|.|.+=.+-|++|= +.-+++++-+..|..+.
T Consensus 243 ~~~~~l~~ia~~~g~~s~aqvaL~w~l~~~~v-~~vI~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~~ 310 (333)
T 1pz1_A 243 SAVNQLDKLAKTRYGKSVIHLAVRWILDQPGA-DIALWGARKPGQLEALSEITGWTLNSEDQKDINTIL 310 (333)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHTSTTC-CEEEEECCSGGGGTTCTTSSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCC-eEEEeCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 44466677765 699 9999987655555411 23455544444455553 23468888888777664
No 181
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=21.99 E-value=61 Score=24.74 Aligned_cols=37 Identities=11% Similarity=0.246 Sum_probs=24.2
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 032468 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (140)
Q Consensus 43 kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap 82 (140)
-|+|.|-+-..|.+. |.|..-|-.+|.++.++-|-.|
T Consensus 10 agVS~~TVSrvLn~~---~~vs~~tr~rV~~~a~~lgY~p 46 (340)
T 1qpz_A 10 ANVSTTTVSHVINKT---RFVAEETRNAVWAAIKELHYSP 46 (340)
T ss_dssp HTSCHHHHHHHHHTC---SCCCHHHHHHHHHHHHHHTCCC
T ss_pred HCCCHHHHHHHHcCc---CCCCHHHHHHHHHHHHHhCCCC
Confidence 377777777777744 4466667777777766666544
No 182
>1cp9_A Penicillin amidohydrolase; antibiotic resistance, NTN-hydrolase fold, N-terminal pyroglutamate, penicillin binding protein; 2.50A {Providencia rettgeri} SCOP: d.153.1.2
Probab=21.46 E-value=18 Score=28.36 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.0
Q ss_pred hHhhhccCCCceeeec
Q 032468 52 VILRDSHGIAQVKSVT 67 (140)
Q Consensus 52 ~~LRD~~GVp~Vk~vt 67 (140)
.|.||.||||-|..-+
T Consensus 6 ~I~RD~~GVPHI~A~~ 21 (205)
T 1cp9_A 6 KIERDNYGVPHIYAND 21 (205)
T ss_dssp EEEECTTCCEEEECSS
T ss_pred EEEECCCCCeeEEeCC
Confidence 4678999999877544
No 183
>3l91_A Acyl-homoserine lactone acylase PVDQ subunit ALPH; pyoverdine, NTN hydrolase, quorum sensing, ZY hydrolase; HET: OCA; 1.66A {Pseudomonas aeruginosa} PDB: 2wyb_A* 2wyd_A* 2wyc_A 2wye_A* 3l94_A* 3src_A* 3srb_A* 3sra_A*
Probab=21.42 E-value=13 Score=28.43 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=50.6
Q ss_pred hHhhhccCCCceeeecchhH-----------------HHHHHHcC-------CCC-------CChhhHHHHHHHHHHHHH
Q 032468 52 VILRDSHGIAQVKSVTGSKI-----------------LRILKAHG-------LAP-------EIPEDLYHLIKKAVAIRK 100 (140)
Q Consensus 52 ~~LRD~~GVp~Vk~vtG~ki-----------------~~ILk~ng-------lap-------~iPEDL~~LikKAv~~Rk 100 (140)
.|.||.||||-|.--+=..+ ...+..+| -.. .|+-|.+. +.+.++.
T Consensus 11 ~I~rD~~GVPHI~A~~~~dl~fg~Gya~AqDRl~qm~~~r~~a~G~lse~~G~~~~~~~~~~~l~~D~~~---R~l~~~~ 87 (170)
T 3l91_A 11 DIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFY---AWLNQPE 87 (170)
T ss_dssp EEEEEGGGEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHCTTCBCTTSCBHHHHHHHH---HHHTCHH
T ss_pred EEEECCCCCceEEeCCHhhHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHhCCCcccccccchhhhhHHH---HHcCCHH
Confidence 36899999999875443332 01112222 221 36777654 5667776
Q ss_pred HHhHcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 032468 101 HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139 (140)
Q Consensus 101 HLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~~LP~~W 139 (140)
..++.-... +.....++|+=..=+..|-.....+|..+
T Consensus 88 ~a~~~~~~l-~~~~r~~l~aYa~GvNayl~~~~~lp~e~ 125 (170)
T 3l91_A 88 ALQAFWQAQ-TPAVRQLLEGYAAGFNRFLREADGKTTSC 125 (170)
T ss_dssp HHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHCCSTTCTT
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 666654333 33444678887777777777777787654
No 184
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=21.37 E-value=1.5e+02 Score=17.97 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=16.0
Q ss_pred CCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC
Q 032468 44 GLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81 (140)
Q Consensus 44 G~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ngla 81 (140)
|++++.|..+.+... -| +-..+.+|.+.-|+.
T Consensus 35 gis~~~i~~~e~g~~-~~-----~~~~l~~ia~~l~v~ 66 (82)
T 3s8q_A 35 NLDRTYISGIERNSR-NL-----TIKSLELIMKGLEVS 66 (82)
T ss_dssp TCCHHHHHHHHTTCC-CC-----BHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHCCCC-CC-----CHHHHHHHHHHHCcC
Confidence 566666666655442 12 223355555555544
No 185
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=21.35 E-value=64 Score=24.88 Aligned_cols=62 Identities=18% Similarity=0.088 Sum_probs=31.9
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHhhh-ccCCCceeeecchhHHHHHHHcCCCCCChhhHHHH
Q 032468 25 WLKISSQDVEDNICKFAKKGLTPSQIGVILRD-SHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHL 91 (140)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~~LRD-~~GVp~Vk~vtG~ki~~ILk~nglap~iPEDL~~L 91 (140)
|+.-+++|. +.+.+. -|+++..+-..+.. .|+...+..-.=..+.+.|.+.|+ +.-| |+-.+
T Consensus 267 ~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~ 329 (341)
T 3un6_A 267 KMNDRKQSV-DIMTHH--FKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHL-FNPP-AYDDF 329 (341)
T ss_dssp HTTSHHHHH-HHHHHH--SSSCHHHHHHHHHTEECSCCCCCHHHHHHHHHHHHHTTS-CCCC-CHHHH
T ss_pred HHHhCHHHH-HHHHHH--hCcCHHHHHHHhcCCcCCCCCCCHHHHHHHHHHHHHcCC-CCCC-CHHHh
Confidence 444555555 444332 36777766554532 344322221122456678888888 6544 44433
No 186
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1lwi_A*
Probab=21.35 E-value=87 Score=24.81 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=36.7
Q ss_pred HHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcC--CCCCChhhHHHHHHHH
Q 032468 36 NICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG--LAPEIPEDLYHLIKKA 95 (140)
Q Consensus 36 ~Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ng--lap~iPEDL~~LikKA 95 (140)
.+.++|+ .|.||+|+-+.---++| +-.|.|.+=.+-|++|= +..+++++-+..|..+
T Consensus 240 ~l~~ia~~~g~s~aqvaL~w~l~~~---~~vI~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~ 299 (323)
T 1afs_A 240 VLCAIAKKYKQTPALVALRYQLQRG---VVPLIRSFNAKRIKELTQVFEFQLASEDMKALDGL 299 (323)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTT---CEEEECCSCHHHHHHHTTTTSCCCCHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCC---CEEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 3445554 69999999887666676 34566655455555553 2357888877766544
No 187
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.18 E-value=17 Score=28.52 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhh
Q 032468 29 SSQDVEDNICKFAKKGLTPSQIGVILR 55 (140)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~~LR 55 (140)
++++|-..++.+-..|++|||++..|-
T Consensus 8 ~~~~~~~~~~~~~~~G~~i~~~~~~l~ 34 (258)
T 2i2x_B 8 SLKKVLTRYNVALEKALTPEEAAEELY 34 (258)
T ss_dssp HHHHHCCCHHHHHSCSSCHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHhC
Confidence 455555567888899999999998874
No 188
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=21.17 E-value=51 Score=19.49 Aligned_cols=41 Identities=24% Similarity=0.045 Sum_probs=24.8
Q ss_pred CCCCCCcC-CCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchh
Q 032468 8 GKGISASA-LPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQI 50 (140)
Q Consensus 8 ~kG~S~S~-~P~~~~~P~W~~~~~eeve~~IvklakkG~~pSqI 50 (140)
..|.|.|. ++- +..-=+.+|+||-+.+-......|+|.|+.
T Consensus 3 ~~~R~k~~~r~r--~~~i~vRlt~eE~~~l~~~A~~~g~s~Sey 44 (51)
T 2ba3_A 3 SAVRKKSEVRQK--TVVRTLRFSPVEDETIRKKAEDSGLTVSAY 44 (51)
T ss_dssp BTTBCTTCCCCC--SEEEEEEECHHHHHHHHHHHHHHTCCHHHH
T ss_pred cccCCCCCCCcC--ceeEEEEECHHHHHHHHHHHHHhCCCHHHH
Confidence 45666654 321 112235568888877766666789987653
No 189
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=21.01 E-value=70 Score=21.71 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.3
Q ss_pred ccCChHHHHHHHHHHHhcCC
Q 032468 26 LKISSQDVEDNICKFAKKGL 45 (140)
Q Consensus 26 ~~~~~eeve~~IvklakkG~ 45 (140)
|.++..+|..++..|.++|+
T Consensus 39 Lg~sK~~vNr~LY~L~kkG~ 58 (75)
T 1sfu_A 39 LKINKKKINQQLYKLQKEDT 58 (75)
T ss_dssp TTCCHHHHHHHHHHHHHTTS
T ss_pred HCCCHHHHHHHHHHHHHCCC
Confidence 46788899999999999996
No 190
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=20.72 E-value=93 Score=27.54 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=33.0
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 032468 33 VEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (140)
Q Consensus 33 ve~~Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~nglap~i 84 (140)
|.+.|.+|.. .|++++.|+++.|+.. + ...|.+.|.++|+.-.+
T Consensus 336 va~~I~~l~~~~g~~~~diAIL~R~~~---~-----~~~le~~L~~~gIPy~~ 380 (724)
T 1pjr_A 336 VAGRIREAVERGERRYRDFAVLYRTNA---Q-----SRVMEEMLLKANIPYQI 380 (724)
T ss_dssp HHHHHHHHHTTTSCCGGGEEEEESSGG---G-----HHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhcCCChhheeeeeecch---h-----HHHHHHHHHHcCCCEEE
Confidence 5677788876 8999999999999853 2 34577788888765544
No 191
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=20.71 E-value=32 Score=26.00 Aligned_cols=50 Identities=6% Similarity=0.230 Sum_probs=34.2
Q ss_pred CCCCCCCC---CC-ccCChHHHHHHHHHHHhcCCCc-chhhh-HhhhccCCCceee
Q 032468 16 LPYKRTPP---SW-LKISSQDVEDNICKFAKKGLTP-SQIGV-ILRDSHGIAQVKS 65 (140)
Q Consensus 16 ~P~~~~~P---~W-~~~~~eeve~~IvklakkG~~p-SqIG~-~LRD~~GVp~Vk~ 65 (140)
+||+.... .| +....+++-+....||.+|++. +-+|. .|-|.-|....-+
T Consensus 24 I~y~~~~~~~~g~~I~Vp~~~~~~ar~~La~~GLP~~~~~g~~elf~~~~~g~T~~ 79 (170)
T 2y9j_Y 24 IEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPADSLVSSPR 79 (170)
T ss_dssp CCEEEEECTTSCEEEEECGGGHHHHHHHHHHTTCSCCCCCCTTCCTTTCSCCCSHH
T ss_pred CCEEEecCCCCCeEEEECHHHHHHHHHHHHHcCCCCCCCCCHHHHhCCCCCCCCHH
Confidence 45555444 35 5668899999999999999975 56777 6666655444333
No 192
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Probab=20.54 E-value=95 Score=24.61 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcC--CCCCChhhHHHHHHHH
Q 032468 36 NICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG--LAPEIPEDLYHLIKKA 95 (140)
Q Consensus 36 ~Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ng--lap~iPEDL~~LikKA 95 (140)
.+.++|+ .|.||+|+-+.---++| +-.|.|.+=.+-|++|= +..+++++-+..|..+
T Consensus 243 ~l~~ia~~~g~s~aqvaL~w~l~~~---~~~I~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~ 302 (326)
T 3buv_A 243 LLNSLGKRYNKTAAQIVLRFNIQRG---VVVIPKSFNLERIKENFQIFDFSLTEEEMKDIEAL 302 (326)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHTT---CEECCBCCSHHHHHHHHCCSSCCCCHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCC---CEEEeCCCCHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 3445554 59999999876655666 34566655444455542 2357888877766544
No 193
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.43 E-value=77 Score=18.78 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=5.8
Q ss_pred CCCcchhhhHhhh
Q 032468 44 GLTPSQIGVILRD 56 (140)
Q Consensus 44 G~~pSqIG~~LRD 56 (140)
|++++.|..+.+.
T Consensus 34 gis~~~i~~~e~g 46 (77)
T 2b5a_A 34 GLHRTYISEVERG 46 (77)
T ss_dssp TCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCC
Confidence 4444444444443
No 194
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Probab=20.35 E-value=81 Score=24.93 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=36.2
Q ss_pred HHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcC--CCCCChhhHHHHHHHH
Q 032468 36 NICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG--LAPEIPEDLYHLIKKA 95 (140)
Q Consensus 36 ~Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~ng--lap~iPEDL~~LikKA 95 (140)
.+.++|+ .|.||+|+-+.---++| +-.|.|.+=.+-|++|= +..+++++-+..|..+
T Consensus 233 ~l~~ia~~~g~s~aqvaL~w~l~~~---~~vI~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~ 292 (317)
T 1qwk_A 233 NVLALAEKTHKTPAQVLLRYALDRG---CAILPKSIQENRIKENFEVFDFSLTEEDIAKLEES 292 (317)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHTT---CEEECCCCSHHHHHHHHCCSSCCCCHHHHHHHTTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHhCC---CeEEeCCCCHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 3445554 59999999886666666 34566655444455542 3357888877766544
No 195
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=20.28 E-value=46 Score=24.10 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=20.0
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 24 ~W~~~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
.+-++++++|.+.+..+.++|++++.|-..+
T Consensus 44 ~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~~ 74 (290)
T 1a0p_A 44 TLATAQSDDLQALLAERLEGGYKATSSARLL 74 (290)
T ss_dssp CTTTCCHHHHHHHHHSCC-------CHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4778899999999999999999998876554
No 196
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=20.11 E-value=1.2e+02 Score=17.39 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=8.9
Q ss_pred CCCcchhhhHhhhcc
Q 032468 44 GLTPSQIGVILRDSH 58 (140)
Q Consensus 44 G~~pSqIG~~LRD~~ 58 (140)
|++++.|..+.....
T Consensus 25 gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 25 GTTQQSIEQLENGKT 39 (69)
T ss_dssp TSCHHHHHHHHTTSC
T ss_pred CcCHHHHHHHHcCCC
Confidence 666666666655544
No 197
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Probab=20.07 E-value=97 Score=24.39 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=35.1
Q ss_pred HHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc-C-CCCCChhhHHHHHHHH
Q 032468 37 ICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH-G-LAPEIPEDLYHLIKKA 95 (140)
Q Consensus 37 Ivklak-kG~~pSqIG~~LRD~~GVp~Vk~vtG~ki~~ILk~n-g-lap~iPEDL~~LikKA 95 (140)
+.++|+ .|.||+|+-+.---++| +-.|.|.+=.+-|++| + +..+++++-+..|..+
T Consensus 234 l~~ia~~~g~s~aqvaL~w~l~~~---~~~I~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~ 292 (316)
T 1us0_A 234 IKAIAAKHNKTTAQVLIRFPMQRN---LVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSY 292 (316)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHTT---CEECCBCCCHHHHHHHHCCSSCCCCHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHCC---CEEEeCCCCHHHHHHHhhhcCCCCCHHHHHHHHhh
Confidence 444544 59999999887666666 3566665544444444 2 2357888877766543
No 198
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=20.03 E-value=67 Score=27.77 Aligned_cols=28 Identities=7% Similarity=0.240 Sum_probs=19.1
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHh
Q 032468 27 KISSQDVEDNICKFAKKGLTPSQIGVIL 54 (140)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~~L 54 (140)
++|.||+...+-.+..--+|+.|||-.|
T Consensus 15 ~Lt~eEa~~~~~~i~~G~~sd~QiaAfL 42 (433)
T 1brw_A 15 ALTKEEIEWIVRGYTNGDIPDYQMSALA 42 (433)
T ss_dssp CCCHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3577777777777777667777776554
No 199
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=20.00 E-value=52 Score=23.50 Aligned_cols=40 Identities=33% Similarity=0.555 Sum_probs=23.7
Q ss_pred CCCCCCC----ccCChHHHHHHHH----------------HHHh--cCCCcchhhhHhhhccCCCc
Q 032468 19 KRTPPSW----LKISSQDVEDNIC----------------KFAK--KGLTPSQIGVILRDSHGIAQ 62 (140)
Q Consensus 19 ~~~~P~W----~~~~~eeve~~Iv----------------klak--kG~~pSqIG~~LRD~~GVp~ 62 (140)
....|+| ++++.+.+.++|. .+|. +|-||.+| |.-+||++
T Consensus 76 ~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eei----R~~f~I~~ 137 (141)
T 1fs1_B 76 TDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI----RKTFNIKN 137 (141)
T ss_dssp -----HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHH----HHHTC---
T ss_pred hhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH----HHHcCCCC
Confidence 3456888 8999999988875 2333 68888774 66667763
Done!