RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032468
         (140 letters)



>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli
           [TaxId: 562]}
          Length = 88

 Score = 26.2 bits (58), Expect = 0.74
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 100 KHLERNRKDKDSKFRLILVESRIHRLARYYKKT 132
            H   ++KD  S+  L+ + S+  +L  Y K+ 
Sbjct: 40  GHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRK 72


>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus
           [TaxId: 274]}
          Length = 84

 Score = 25.8 bits (57), Expect = 0.95
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 100 KHLERNRKDKDSKFRLILVESRIHRLARYYKKT 132
           +HL+ ++KD  S   L+++  +  RL RY ++ 
Sbjct: 38  EHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQRE 70


>g1k2x.1 d.153.1.5 (A:,B:) Glycosylasparaginase
           (aspartylglucosaminidase, AGA) {Escherichia coli [TaxId:
           562]}
          Length = 291

 Score = 26.6 bits (58), Expect = 1.1
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 9/89 (10%)

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
              M   G    A A   +R  P                  ++ L    +G +  D  G 
Sbjct: 118 HVMMIGEGAENFAFARGMERVSPEIFST---------SLRYEQLLAARTVGAVALDLDGN 168

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLY 89
               + TG    ++    G +P +    Y
Sbjct: 169 LAAATSTGGMTNKLPGRVGDSPLVGAGCY 197


>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 85

 Score = 24.7 bits (54), Expect = 2.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 100 KHLERNRKDKDSKFRLILVESRIHRLARYYKKT 132
           +HL  ++KD  S+  L+ +  +  RL  Y +  
Sbjct: 39  EHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNK 71


>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus
           oryzae, Taka-amylase [TaxId: 5062]}
          Length = 381

 Score = 25.0 bits (53), Expect = 4.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 87  DLYHLIKKAVAIRKH 101
           +LY LI  A AIR +
Sbjct: 357 ELYKLIASANAIRNY 371


>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 226

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)

Query: 58 HGIAQVKSVTGSKILRILKA----HGLAP 82
          H     +  TG++ L ++KA    HG   
Sbjct: 8  HNYRLAREATGARALAVIKADAYGHGAVR 36


>d1jlwa1 a.45.1.1 (A:91-217) Class delta GST {Mosquito (Anopheles
           dirus b), isozyme 1-4 [TaxId: 123217]}
          Length = 127

 Score = 23.8 bits (51), Expect = 6.0
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 124 RLARYYKKTKKLPPVWK 140
            + R+Y++T  + P   
Sbjct: 97  NVQRWYERTSAIVPGAD 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 527,867
Number of extensions: 23436
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 22
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)