BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032471
         (140 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4T4S9|RSMG_MYCGI Ribosomal RNA small subunit methyltransferase G OS=Mycobacterium
           gilvum (strain PYR-GCK) GN=rsmG PE=3 SV=1
          Length = 227

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 68  LLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMNPRSTSSA---ASASS 124
           L PG  +   KG+RA   +E   R +       LK E C    ++P +T      A+A  
Sbjct: 158 LRPGGRMLAIKGERAAEEIEEHRRALAALGVSELKVERCGARFVDPPATVVVGFQATAPE 217

Query: 125 SRHRKGTRNR 134
            R R G R R
Sbjct: 218 KRPRSGRRQR 227


>sp|B8CX97|MUTL_HALOH DNA mismatch repair protein MutL OS=Halothermothrix orenii (strain
           H 168 / OCM 544 / DSM 9562) GN=mutL PE=3 SV=1
          Length = 644

 Score = 28.9 bits (63), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 5   SIVLENQKHGGFNKKSPQVINKATMIINNK 34
           SI+L ++K+G ++KK+ QV     M INNK
Sbjct: 387 SILLPSKKNGFYSKKNSQVSQNKFMDINNK 416


>sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus
           GN=Ddx59 PE=2 SV=1
          Length = 589

 Score = 28.9 bits (63), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 78  KGDRAFCSVECRCRQIFM--DEEESLKKENCSFAAMNPRSTSSA 119
           K D   CS+EC+ + +    +EE SLK  +   AA  P S   A
Sbjct: 121 KTDEDVCSLECKAKHLLQVKEEEGSLKPSSPQGAASEPESPLDA 164


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.128    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,155,730
Number of Sequences: 539616
Number of extensions: 1624253
Number of successful extensions: 5657
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5643
Number of HSP's gapped (non-prelim): 26
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)