Query 032471
Match_columns 140
No_of_seqs 118 out of 241
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 23:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2das_A Zinc finger MYM-type pr 90.0 0.21 7E-06 34.0 2.7 35 56-90 18-53 (62)
2 2iyb_E Testin, TESS, TES; LIM 88.2 0.28 9.4E-06 30.7 2.2 31 55-89 31-61 (65)
3 2l8e_A Polyhomeotic-like prote 87.9 0.12 4.3E-06 33.0 0.4 30 58-91 18-47 (49)
4 1lv3_A Hypothetical protein YA 84.8 0.42 1.4E-05 32.7 1.8 33 59-97 10-42 (68)
5 1wfl_A Zinc finger protein 216 77.1 2.9 0.0001 28.9 4.0 34 51-86 18-51 (74)
6 1wg2_A Zinc finger (AN1-like) 69.1 4.5 0.00015 27.2 3.3 30 55-86 12-41 (64)
7 1x61_A Thyroid receptor intera 69.0 5.8 0.0002 24.5 3.6 33 53-90 30-62 (72)
8 2xqn_T Testin, TESS; metal-bin 67.0 3.7 0.00013 28.2 2.6 28 60-89 95-122 (126)
9 1wfp_A Zinc finger (AN1-like) 66.6 9 0.00031 26.4 4.5 32 53-86 20-51 (74)
10 1jjd_A Metallothionein, SMTA; 66.6 4.1 0.00014 26.6 2.6 33 58-92 7-39 (55)
11 3j21_V 50S ribosomal protein L 66.4 6 0.00021 26.6 3.5 34 59-92 5-41 (66)
12 2cur_A Skeletal muscle LIM-pro 66.0 6.6 0.00023 24.1 3.4 31 54-89 29-59 (69)
13 1wig_A KIAA1808 protein; LIM d 62.5 4.3 0.00015 25.8 2.1 35 51-89 26-60 (73)
14 2jtn_A LIM domain-binding prot 60.7 6.6 0.00023 28.9 3.1 34 53-89 144-177 (182)
15 2cuq_A Four and A half LIM dom 58.4 10 0.00035 23.8 3.4 32 53-89 38-69 (80)
16 1vq8_U 50S ribosomal protein L 57.5 11 0.00036 25.4 3.4 33 59-91 4-39 (66)
17 2d8x_A Protein pinch; LIM doma 57.4 5.1 0.00017 24.7 1.7 31 54-89 29-59 (70)
18 1iml_A CRIP, cysteine rich int 56.4 8.8 0.0003 24.1 2.8 28 60-89 29-56 (76)
19 4a17_T RPL24, 60S ribosomal pr 55.7 9 0.00031 29.8 3.2 34 59-92 6-42 (158)
20 2l3k_A Rhombotin-2, linker, LI 55.3 14 0.00047 25.6 3.9 35 51-89 31-65 (123)
21 1x4w_A Hypothetical protein FL 54.5 5.6 0.00019 27.0 1.6 31 56-86 13-44 (67)
22 2zkr_u 60S ribosomal protein L 54.5 11 0.00037 29.2 3.5 33 59-91 4-39 (157)
23 1wff_A Riken cDNA 2810002D23 p 54.0 18 0.00061 25.5 4.2 31 55-86 22-52 (85)
24 2cu8_A Cysteine-rich protein 2 53.3 9.9 0.00034 23.8 2.6 28 60-89 38-65 (76)
25 1x6a_A LIMK-2, LIM domain kina 53.0 8.9 0.00031 24.2 2.4 36 51-89 36-71 (81)
26 1v6g_A Actin binding LIM prote 52.9 8.2 0.00028 24.5 2.2 33 53-89 38-70 (81)
27 3f6q_B LIM and senescent cell 52.7 4.5 0.00015 24.7 0.9 27 60-89 41-67 (72)
28 3izc_Z 60S ribosomal protein R 52.7 11 0.00037 29.2 3.2 34 59-92 4-40 (155)
29 1a7i_A QCRP2 (LIM1); LIM domai 50.5 7.6 0.00026 24.7 1.8 27 60-89 36-62 (81)
30 1x4k_A Skeletal muscle LIM-pro 50.0 9.2 0.00031 23.5 2.0 27 60-89 35-61 (72)
31 2egq_A FHL1 protein; LIM domai 49.6 9.1 0.00031 23.9 2.0 27 60-89 48-74 (77)
32 1x4l_A Skeletal muscle LIM-pro 49.5 10 0.00035 23.4 2.2 27 60-89 37-63 (72)
33 3iz5_Z 60S ribosomal protein L 48.8 13 0.00046 28.9 3.2 34 59-92 6-42 (162)
34 1x64_A Alpha-actinin-2 associa 46.8 10 0.00034 24.7 1.9 27 60-89 53-79 (89)
35 2xjy_A Rhombotin-2; oncoprotei 46.2 11 0.00039 25.7 2.2 30 54-85 27-56 (131)
36 1x63_A Skeletal muscle LIM-pro 46.2 11 0.00039 23.7 2.1 31 54-89 41-71 (82)
37 1m3v_A FLIN4, fusion of the LI 46.1 8.4 0.00029 26.6 1.5 35 52-89 28-62 (122)
38 2co8_A NEDD9 interacting prote 45.3 11 0.00037 24.3 1.9 26 60-86 44-70 (82)
39 2rgt_A Fusion of LIM/homeobox 45.1 12 0.0004 27.2 2.3 38 54-94 91-128 (169)
40 1x62_A C-terminal LIM domain p 45.0 7.4 0.00025 24.8 1.0 22 61-84 44-65 (79)
41 1nyp_A Pinch protein; LIM doma 44.3 11 0.00036 23.0 1.6 32 53-89 28-59 (66)
42 1x3h_A Leupaxin; paxillin fami 44.3 13 0.00045 23.3 2.2 27 60-89 43-69 (80)
43 2dar_A PDZ and LIM domain prot 43.6 15 0.00051 23.9 2.4 27 60-89 53-79 (90)
44 1x68_A FHL5 protein; four-and- 43.6 13 0.00045 23.3 2.1 24 60-85 37-60 (76)
45 2d8z_A Four and A half LIM dom 43.0 15 0.00051 22.5 2.2 32 53-89 28-59 (70)
46 2jw6_A Deformed epidermal auto 42.8 11 0.00039 22.5 1.6 37 55-94 6-42 (52)
47 1g47_A Pinch protein; LIM doma 41.9 8.2 0.00028 24.0 0.9 26 60-88 41-66 (77)
48 2dj7_A Actin-binding LIM prote 41.2 12 0.00041 24.2 1.6 24 60-86 44-67 (80)
49 1lfd_A Ralgds; RAL, effector i 40.7 10 0.00034 27.0 1.2 22 5-33 20-41 (87)
50 1wyh_A SLIM 2, skeletal muscle 39.9 17 0.00057 22.3 2.1 31 54-89 31-61 (72)
51 1wfh_A Zinc finger (AN1-like) 39.5 28 0.00097 23.3 3.3 30 55-86 12-41 (64)
52 2l4z_A DNA endonuclease RBBP8, 39.2 8.4 0.00029 27.2 0.7 15 55-69 58-72 (123)
53 1j2o_A FLIN2, fusion of rhombo 39.0 13 0.00045 25.3 1.6 32 53-86 27-58 (114)
54 4fc8_A Transcription protein R 39.0 12 0.00041 30.3 1.6 40 58-97 70-124 (219)
55 2ehe_A Four and A half LIM dom 37.3 19 0.00065 22.7 2.1 30 52-85 39-68 (82)
56 2d8y_A Eplin protein; LIM doma 36.6 14 0.00049 24.0 1.4 23 60-84 44-66 (91)
57 1rlf_A RLF, RLF-RBD; signal tr 36.4 13 0.00046 26.5 1.3 18 17-35 29-46 (90)
58 1b8t_A Protein (CRP1); LIM dom 32.2 34 0.0012 25.2 3.0 27 60-89 144-170 (192)
59 1rax_A Protein (RA-domain of R 31.4 17 0.00059 27.0 1.3 15 18-33 52-66 (115)
60 2cor_A Pinch protein; LIM doma 29.7 30 0.001 22.0 2.1 33 51-89 36-68 (79)
61 2odd_A Protein CBFA2T1; MYND z 29.1 25 0.00087 21.9 1.6 34 58-94 17-50 (64)
62 2cup_A Skeletal muscle LIM-pro 28.5 28 0.00095 22.6 1.8 24 60-85 35-58 (101)
63 1rut_X Flinc4, fusion protein 28.5 32 0.0011 25.3 2.3 34 52-89 93-126 (188)
64 2dlo_A Thyroid receptor-intera 25.3 39 0.0013 21.2 2.0 31 54-89 39-70 (81)
65 3u52_A Phenol hydroxylase comp 24.8 49 0.0017 29.3 3.2 35 56-90 394-438 (511)
66 2dj8_A Protein CBFA2T1; zinc f 24.5 35 0.0012 21.2 1.7 34 58-94 15-48 (60)
67 3kh0_A Ralgds, ralgef, RAL gua 24.2 27 0.00093 26.7 1.2 15 18-33 49-63 (140)
68 1ef5_A RGL; RAS-binding domain 20.1 19 0.00065 26.3 -0.3 16 17-33 41-56 (103)
No 1
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=90.01 E-value=0.21 Score=33.95 Aligned_cols=35 Identities=34% Similarity=0.665 Sum_probs=29.8
Q ss_pred hhhccCccCCCCCCCCCceEEEcCC-CcccChhhHH
Q 032471 56 TFLQHCFLCKQTLLPGKDIYMYKGD-RAFCSVECRC 90 (140)
Q Consensus 56 ~FL~~C~~CkK~L~~gkDIyMYRGe-~AFCS~ECR~ 90 (140)
.+-..|..|||.|..|+--|-..|+ .-|||..|=.
T Consensus 18 ~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~ 53 (62)
T 2das_A 18 PAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62)
T ss_dssp CSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred ccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence 3567799999999999999988886 4699999953
No 2
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=88.20 E-value=0.28 Score=30.69 Aligned_cols=31 Identities=39% Similarity=0.863 Sum_probs=23.7
Q ss_pred hhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 55 PTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 55 ~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
..| .|..|++.|. + ..|.-++.+.||..+|-
T Consensus 31 ~CF--~C~~C~~~L~-~-~~f~~~~g~~yC~~~C~ 61 (65)
T 2iyb_E 31 ECF--LCSCCSKCLI-G-QKFMPVEGMVFCSVECK 61 (65)
T ss_dssp TTS--BCTTTCCBCT-T-SCCEEETTEEESSHHHH
T ss_pred CCE--ECCCCCCcCC-C-CceEEECCEEecCHHHh
Confidence 345 6888999994 3 34667788999999995
No 3
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=87.85 E-value=0.12 Score=33.03 Aligned_cols=30 Identities=30% Similarity=0.779 Sum_probs=23.7
Q ss_pred hccCccCCCCCCCCCceEEEcCCCcccChhhHHH
Q 032471 58 LQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCR 91 (140)
Q Consensus 58 L~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~ 91 (140)
+..|-.|.+.|.+.. .+-.+-|||..||..
T Consensus 18 ~~~C~~CG~~i~~~~----~~r~krFCS~sCR~~ 47 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQ----FRGSKRFCSMTCAKR 47 (49)
T ss_dssp EEECTTTCCEEEGGG----CTTTSSSCSHHHHHH
T ss_pred CCcChhccCcccccc----CCCCCccCCHHHHhh
Confidence 456999999986443 377889999999964
No 4
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=84.84 E-value=0.42 Score=32.67 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=22.7
Q ss_pred ccCccCCCCCCCCCceEEEcCCCcccChhhHHHHHHhhH
Q 032471 59 QHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDE 97 (140)
Q Consensus 59 ~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~~DE 97 (140)
..|-.|+|... +..- .-.++|||+.|| .|++-+
T Consensus 10 ~~CP~Cgkp~~-W~~~---~~~rPFCSeRCr--~iDLg~ 42 (68)
T 1lv3_A 10 VNCPTCGKTVV-WGEI---SPFRPFCSKRCQ--LIDLGE 42 (68)
T ss_dssp EECTTTCCEEE-CSSS---SSCCSSSSHHHH--HHHHSC
T ss_pred CcCCCCCCccc-cccc---CCCCcccCHHHH--hhhHHH
Confidence 46999999873 2222 235799999999 566543
No 5
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=77.13 E-value=2.9 Score=28.94 Aligned_cols=34 Identities=15% Similarity=0.370 Sum_probs=24.7
Q ss_pred CCCchhhhccCccCCCCCCCCCceEEEcCCCcccCh
Q 032471 51 TFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSV 86 (140)
Q Consensus 51 ~~~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ 86 (140)
+.....+-..|+.|+|+|+ ---|--|-..-||+.
T Consensus 18 ~~~~k~~~nRC~~CrKkvg--L~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 18 PELPKPKKNRCFMCRKKVG--LTGFDCRCGNLFCGL 51 (74)
T ss_dssp CCCCCSCTTBCSSSCCBCG--GGCEECTTSCEECSS
T ss_pred cccCCCcCCcChhhCCccc--ccCeecCCCCEechh
Confidence 3444456789999999974 224777888889984
No 6
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=69.15 E-value=4.5 Score=27.21 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=22.7
Q ss_pred hhhhccCccCCCCCCCCCceEEEcCCCcccCh
Q 032471 55 PTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSV 86 (140)
Q Consensus 55 ~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ 86 (140)
..+-..|..|+|+|+- -.|--|-..-||+.
T Consensus 12 ~~~~~rC~~C~kkvgl--~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGV--MGFKCKCGSTFCGS 41 (64)
T ss_dssp SCCSCSCTTTCCCCTT--SCEECTTSCEECSS
T ss_pred CCcCCcChhhCCcccc--cCeEeecCCEeccc
Confidence 3455789999999852 25777889999984
No 7
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.96 E-value=5.8 Score=24.51 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=22.8
Q ss_pred CchhhhccCccCCCCCCCCCceEEEcCCCcccChhhHH
Q 032471 53 PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRC 90 (140)
Q Consensus 53 ~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~ 90 (140)
-...| .|..|++.|. .+.|.-+.++.|| ..|-.
T Consensus 30 H~~CF--~C~~C~~~L~--~~~~~~~~~~~yC-~~cy~ 62 (72)
T 1x61_A 30 HVGCF--VCSTCRAQLR--GQHFYAVERRAYC-EGCYV 62 (72)
T ss_dssp CTTTC--BCSSSCCBCT--TSCEEESSSCEEE-HHHHH
T ss_pred cccCC--cccccCCcCC--cCcCEeeCCeEEC-HHHHH
Confidence 34455 5888999993 4557777888999 45553
No 8
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=66.99 E-value=3.7 Score=28.18 Aligned_cols=28 Identities=36% Similarity=0.793 Sum_probs=21.9
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|. .+.|.-++++.||..+|-
T Consensus 95 ~C~~C~~~l~--~~~f~~~~~~~yC~~~~~ 122 (126)
T 2xqn_T 95 LCSCCSKCLI--GQKFMPVEGMVFCSVECK 122 (126)
T ss_dssp BCTTTCCBCT--TSEEEEETTEEESSHHHH
T ss_pred CcCCCCCccC--CCeeEeECCEEcchHHhh
Confidence 5778889995 455666788999998885
No 9
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=66.63 E-value=9 Score=26.45 Aligned_cols=32 Identities=16% Similarity=0.444 Sum_probs=24.2
Q ss_pred CchhhhccCccCCCCCCCCCceEEEcCCCcccCh
Q 032471 53 PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSV 86 (140)
Q Consensus 53 ~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ 86 (140)
+...+-..|..|+|+|.-- -|--|-..-||+.
T Consensus 20 ~~k~~~~RC~~C~kkvgL~--~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 20 PPKSTATRCLSCNKKVGVT--GFKCRCGSTFCGT 51 (74)
T ss_dssp CTTCCCCBCSSSCCBCTTT--CEECTTSCEECTT
T ss_pred cCcccCccchhhcCccccc--ceEeccCCEeccc
Confidence 3456668899999998532 5777888999984
No 10
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=66.58 E-value=4.1 Score=26.63 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=22.7
Q ss_pred hccCccCCCCCCCCCceEEEcCCCcccChhhHHHH
Q 032471 58 LQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQ 92 (140)
Q Consensus 58 L~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~q 92 (140)
.-.|..|.=-+. .+|. |.++.+.|||++|-...
T Consensus 7 kCaC~~C~c~Vs-~~ea-i~~dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 7 KCACEPCLCNVD-PSKA-IDRNGLYYCSEACADGH 39 (55)
T ss_dssp CCSSTTCCCCBC-TTTS-EESSSCEESSHHHHHTS
T ss_pred eecCCCCeeEec-hHHh-hhcCCeEEehHHHHccC
Confidence 345778877664 3444 34778999999998543
No 11
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.38 E-value=6 Score=26.60 Aligned_cols=34 Identities=26% Similarity=0.589 Sum_probs=28.0
Q ss_pred ccCccCCCCCCCCCceEEEcCCC---cccChhhHHHH
Q 032471 59 QHCFLCKQTLLPGKDIYMYKGDR---AFCSVECRCRQ 92 (140)
Q Consensus 59 ~~C~~CkK~L~~gkDIyMYRGe~---AFCS~ECR~~q 92 (140)
..|.+|..+|-||.-+-.-|.|. -|||.-|....
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f 41 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYY 41 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHH
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHH
Confidence 56999999999998877777774 49999998653
No 12
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.96 E-value=6.6 Score=24.13 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=22.3
Q ss_pred chhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 54 VPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 54 ~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
...| .|..|++.|. .+.|.-+..+.|| .+|-
T Consensus 29 ~~CF--~C~~C~~~L~--~~~~~~~~~~~yC-~~cy 59 (69)
T 2cur_A 29 ADCF--VCVTCSKKLA--GQRFTAVEDQYYC-VDCY 59 (69)
T ss_dssp TTTT--BCTTTCCBCT--TSCEEECSSCEEE-HHHH
T ss_pred cCcC--EECCCCCCCC--CCccEeECCEEEC-HHHh
Confidence 3455 5888999995 3457778889999 4565
No 13
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.50 E-value=4.3 Score=25.77 Aligned_cols=35 Identities=20% Similarity=0.501 Sum_probs=24.3
Q ss_pred CCCchhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 51 TFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 51 ~~~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.+-...| .|..|++.|.++ +.|..++.+.||. +|-
T Consensus 26 ~wH~~CF--~C~~C~~~L~~~-~~f~~~~~~~yC~-~C~ 60 (73)
T 1wig_A 26 HYHPSCA--LCVRCGQMFAEG-EEMYLQGSSIWHP-ACR 60 (73)
T ss_dssp CBCTTTS--CCSSSCCCCCSS-CCCEEETTEEECT-THH
T ss_pred CCCCCcC--EeCCCCCCCCCC-CeeEeeCCEEECh-HHC
Confidence 3445556 588899999544 4566677889996 475
No 14
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=60.72 E-value=6.6 Score=28.86 Aligned_cols=34 Identities=26% Similarity=0.679 Sum_probs=22.0
Q ss_pred CchhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 53 PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 53 ~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
-...| .|..|++.|..|...|+-...+.|| ..|-
T Consensus 144 H~~CF--~C~~C~~~L~~g~~f~~~~~g~~yC-~~cy 177 (182)
T 2jtn_A 144 HLHCF--ACVVCKRQLATGDEFYLMEDSRLVC-KADY 177 (182)
T ss_dssp CTTTC--CCTTTCCCCCTTCEEEECTTSCEEC-HHHH
T ss_pred EeCCC--cCCCCCCCCCCCCceEEccCCEEEC-HHHH
Confidence 33445 5777888886666556656667888 4554
No 15
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.37 E-value=10 Score=23.84 Aligned_cols=32 Identities=22% Similarity=0.618 Sum_probs=22.2
Q ss_pred CchhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 53 PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 53 ~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
-...| .|..|++.|. +. .|.-+.++.|| .+|-
T Consensus 38 H~~CF--~C~~C~~~L~-~~-~~~~~~~~~yC-~~cy 69 (80)
T 2cuq_A 38 HRECL--VCTGCQTPLA-GQ-QFTSRDEDPYC-VACF 69 (80)
T ss_dssp CTTTC--BCSSSCCBCT-TC-CEEECSSSEEE-HHHH
T ss_pred hhhhC--CcccCCCcCC-CC-eeEeECCEEEC-HHHH
Confidence 33445 5888999994 33 56668889999 4564
No 16
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=57.46 E-value=11 Score=25.37 Aligned_cols=33 Identities=27% Similarity=0.678 Sum_probs=27.3
Q ss_pred ccCccCCCCCCCCCceEEEcCCC---cccChhhHHH
Q 032471 59 QHCFLCKQTLLPGKDIYMYKGDR---AFCSVECRCR 91 (140)
Q Consensus 59 ~~C~~CkK~L~~gkDIyMYRGe~---AFCS~ECR~~ 91 (140)
..|.+|..+|-||.-+-.-|.|. -|||.-|...
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~ 39 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENN 39 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHH
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHH
Confidence 56999999999998776666664 4999999965
No 17
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.44 E-value=5.1 Score=24.75 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=22.1
Q ss_pred chhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 54 VPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 54 ~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
...| .|..|++.|..+ .|..+..+.||. .|-
T Consensus 29 ~~CF--~C~~C~~~L~~~--~f~~~~g~~yC~-~c~ 59 (70)
T 2d8x_A 29 PECF--RCDLCQEVLADI--GFVKNAGRHLCR-PCH 59 (70)
T ss_dssp TTTS--BCSSSCCBCSSS--CCEEETTEEECH-HHH
T ss_pred ccCC--EeCCCCCcCCCC--ccEeECCeEECH-HHh
Confidence 3455 588899999654 466788889994 554
No 18
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=56.44 E-value=8.8 Score=24.07 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=20.5
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|..+ .|.-+..+.||..+|-
T Consensus 29 ~C~~C~~~L~~~--~~~~~~g~~yC~~~cy 56 (76)
T 1iml_A 29 KCEKCGKTLTSG--GHAEHEGKPYCNHPCY 56 (76)
T ss_dssp BCTTTCCBCCTT--TEEEETTEEEETTTHH
T ss_pred CccccCccCCCC--ceECcCCeEeeCHHHH
Confidence 488899999654 3656778899964565
No 19
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=55.68 E-value=9 Score=29.78 Aligned_cols=34 Identities=21% Similarity=0.552 Sum_probs=28.6
Q ss_pred ccCccCCCCCCCCCceEEEcCCC---cccChhhHHHH
Q 032471 59 QHCFLCKQTLLPGKDIYMYKGDR---AFCSVECRCRQ 92 (140)
Q Consensus 59 ~~C~~CkK~L~~gkDIyMYRGe~---AFCS~ECR~~q 92 (140)
..|++|..+|-||.-+-.-|.|. -|||.-|+...
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f 42 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLS 42 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHH
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHH
Confidence 56999999999999887778775 49999998764
No 20
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=55.33 E-value=14 Score=25.56 Aligned_cols=35 Identities=17% Similarity=0.491 Sum_probs=24.0
Q ss_pred CCCchhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 51 TFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 51 ~~~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.+-...| .|..|++.|..+. .|.-+..+.|| ..|-
T Consensus 31 ~~H~~CF--~C~~C~~~L~~g~-~f~~~~g~~yC-~~cy 65 (123)
T 2l3k_A 31 VYHLECF--KCAACQKHFSVGD-RYLLINSDIVC-EQDI 65 (123)
T ss_dssp CCCTTTC--BCTTTCCBCCTTC-EEEECSSSEEE-GGGH
T ss_pred ccccccC--ccccCCCCCCCCC-cEEeeCCEEEc-HHHh
Confidence 3445566 5888999995444 46666788999 4554
No 21
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.50 E-value=5.6 Score=26.95 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=21.1
Q ss_pred hhhccCccCCCCCCCCC-ceEEEcCCCcccCh
Q 032471 56 TFLQHCFLCKQTLLPGK-DIYMYKGDRAFCSV 86 (140)
Q Consensus 56 ~FL~~C~~CkK~L~~gk-DIyMYRGe~AFCS~ 86 (140)
.+-..|..|+|+++--. ..|--|-..-||+.
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred ccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 34468999999985111 02556888889984
No 22
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=54.49 E-value=11 Score=29.22 Aligned_cols=33 Identities=18% Similarity=0.437 Sum_probs=27.4
Q ss_pred ccCccCCCCCCCCCceEEEcCCC---cccChhhHHH
Q 032471 59 QHCFLCKQTLLPGKDIYMYKGDR---AFCSVECRCR 91 (140)
Q Consensus 59 ~~C~~CkK~L~~gkDIyMYRGe~---AFCS~ECR~~ 91 (140)
..|++|..+|-||.-+-.-|.|. -|||.-|...
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~ 39 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESA 39 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHH
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHH
Confidence 57999999999998777767664 4999999865
No 23
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=54.00 E-value=18 Score=25.47 Aligned_cols=31 Identities=23% Similarity=0.624 Sum_probs=23.4
Q ss_pred hhhhccCccCCCCCCCCCceEEEcCCCcccCh
Q 032471 55 PTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSV 86 (140)
Q Consensus 55 ~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ 86 (140)
..+-..|..|+|+|+-- --|--|-..-||+.
T Consensus 22 k~~~~rC~~C~kkvgl~-~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLA-TSFECRCGNNFCAS 52 (85)
T ss_dssp CCCCCBCSSSCCBCSSS-SCEECTTCCEECTT
T ss_pred cccCccchhhCCeeccc-CCeEcCCCCEeccc
Confidence 35567899999998531 35777888999984
No 24
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.28 E-value=9.9 Score=23.81 Aligned_cols=28 Identities=29% Similarity=0.613 Sum_probs=20.3
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|.. +.|.-+..+.||...|-
T Consensus 38 ~C~~C~~~L~~--~~~~~~~g~~yC~~~cy 65 (76)
T 2cu8_A 38 KCERCSKTLTP--GGHAEHDGKPFCHKPCY 65 (76)
T ss_dssp BCSSSCCBCCT--TSCEEETTEEECTTTHH
T ss_pred CCCCCCCccCC--CceEeECCEEecchHHH
Confidence 47889999963 35666778899964565
No 25
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.96 E-value=8.9 Score=24.25 Aligned_cols=36 Identities=19% Similarity=0.600 Sum_probs=23.7
Q ss_pred CCCchhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 51 TFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 51 ~~~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.+-...| .|..|++.|.++...++-+..+.||. .|-
T Consensus 36 ~~H~~CF--~C~~C~~~L~~g~~f~~~~~~~~~C~-~c~ 71 (81)
T 1x6a_A 36 KYHPECF--ACMSCKVIIEDGDAYALVQHATLYCG-KCH 71 (81)
T ss_dssp CBCTTSC--BCTTTCCBCCTTSCEEECSSSCEEEH-HHH
T ss_pred eeccccC--CccCCCCccCCCCcEEEeeCCEEECH-HHH
Confidence 3445566 58899999965554333377789995 454
No 26
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.87 E-value=8.2 Score=24.52 Aligned_cols=33 Identities=24% Similarity=0.718 Sum_probs=22.4
Q ss_pred CchhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 53 PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 53 ~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
-...| .|..|++.|.. .+.|..+|...||. .|-
T Consensus 38 H~~CF--~C~~C~~~L~~-~~~~~~~~~~~~C~-~C~ 70 (81)
T 1v6g_A 38 HPDCF--VCAVCRLPFPP-GDRVTFNGKECMCQ-KCS 70 (81)
T ss_dssp CTTTS--SCSSSCCCCCS-SSCEEEETTEEEEH-HHH
T ss_pred CccCC--ccccCCCCCCC-CCEEEeCCCCEECh-hhh
Confidence 34455 58889999954 45677777777884 554
No 27
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=52.73 E-value=4.5 Score=24.65 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=19.6
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|..+ .|.-+..+.|| .+|-
T Consensus 41 ~C~~C~~~L~~~--~~~~~~g~~yC-~~~y 67 (72)
T 3f6q_B 41 VCAQCFQQFPEG--LFYEFEGRKYC-EHDF 67 (72)
T ss_dssp SCTTTCCCCGGG--CCEEETTEEEC-HHHH
T ss_pred cccCCCCCCCCC--CeEeECCeEeC-HHHH
Confidence 478899999655 56667788999 4553
No 28
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=52.67 E-value=11 Score=29.19 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=28.2
Q ss_pred ccCccCCCCCCCCCceEEEcCCC---cccChhhHHHH
Q 032471 59 QHCFLCKQTLLPGKDIYMYKGDR---AFCSVECRCRQ 92 (140)
Q Consensus 59 ~~C~~CkK~L~~gkDIyMYRGe~---AFCS~ECR~~q 92 (140)
..|++|..+|-||.-+-.-|.|. -|||.-|....
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f 40 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLF 40 (155)
T ss_dssp EECTTTCSEECTTCCEEEECTTCCEEEESSHHHHHHH
T ss_pred eEecCcCCcccCCCCeEEEecCCCEEEEEcHHHHHHH
Confidence 56999999999999887777774 49999997654
No 29
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=50.54 E-value=7.6 Score=24.68 Aligned_cols=27 Identities=19% Similarity=0.631 Sum_probs=19.1
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|..+ .|.-+..+.|| ..|-
T Consensus 36 ~C~~C~~~L~~~--~~~~~~~~~yC-~~cy 62 (81)
T 1a7i_A 36 LCMVCRKNLDST--TVAIHDAEVYC-KSCY 62 (81)
T ss_dssp ECSSSCCEECSS--CCEEETTEEEC-SHHH
T ss_pred ccCCCCCCCCCC--CeEeeCCEEEC-HHHH
Confidence 478899999543 36666788999 4554
No 30
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.02 E-value=9.2 Score=23.50 Aligned_cols=27 Identities=26% Similarity=0.695 Sum_probs=19.2
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|..+ .|.-+..+.||. .|-
T Consensus 35 ~C~~C~~~L~~~--~~~~~~~~~yC~-~cy 61 (72)
T 1x4k_A 35 ICHRCQQPIGTK--SFIPKDNQNFCV-PCY 61 (72)
T ss_dssp CCSSSCCCCCSS--SEEEETTEEEEH-HHH
T ss_pred cccccCCccCCC--ccCccCCeEECH-HHH
Confidence 478889999644 566677889984 554
No 31
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=49.59 E-value=9.1 Score=23.89 Aligned_cols=27 Identities=22% Similarity=0.867 Sum_probs=19.0
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|. + +.|.-+..+.||. +|-
T Consensus 48 ~C~~C~~~L~-~-~~f~~~~~~~yC~-~cy 74 (77)
T 2egq_A 48 HCKKCSVNLA-N-KRFVFHQEQVYCP-DCA 74 (77)
T ss_dssp BCSSSCCBCT-T-SCCCEETTEECCH-HHH
T ss_pred EehhcCCCCC-C-CccEeECCEEECh-HHh
Confidence 4788899995 3 3566677889994 553
No 32
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.49 E-value=10 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.687 Sum_probs=19.8
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|. .+.|.-+..+.||. +|-
T Consensus 37 ~C~~C~~~L~--~~~f~~~~g~~yC~-~c~ 63 (72)
T 1x4l_A 37 NCKKCSLSLV--GRGFLTERDDILCP-DCG 63 (72)
T ss_dssp BCSSSCCBCT--TSCCEECSSSEECH-HHH
T ss_pred EeccCCCcCC--CCccEeECCEEECh-hHc
Confidence 5888999995 34566688899995 453
No 33
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=48.83 E-value=13 Score=28.94 Aligned_cols=34 Identities=26% Similarity=0.569 Sum_probs=27.8
Q ss_pred ccCccCCCCCCCCCceEEEcCCC---cccChhhHHHH
Q 032471 59 QHCFLCKQTLLPGKDIYMYKGDR---AFCSVECRCRQ 92 (140)
Q Consensus 59 ~~C~~CkK~L~~gkDIyMYRGe~---AFCS~ECR~~q 92 (140)
..|++|..+|-||.-+-.-|.|. -|||.-|....
T Consensus 6 e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f 42 (162)
T 3iz5_Z 6 ELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYF 42 (162)
T ss_dssp EECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHHH
T ss_pred EEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHHH
Confidence 46999999999998887777774 49999997543
No 34
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=46.83 E-value=10 Score=24.66 Aligned_cols=27 Identities=19% Similarity=0.509 Sum_probs=16.9
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|..+ + |..+..+.||. +|-
T Consensus 53 ~C~~C~~~L~~~-~-~~~~~g~~yC~-~~y 79 (89)
T 1x64_A 53 VCADCNLNLKQK-G-YFFVEGELYCE-THA 79 (89)
T ss_dssp CCSSSCCCTTTS-C-CEEETTEEECH-HHH
T ss_pred EecCCCCCCCCC-C-eEeECCEEECH-HHH
Confidence 467778888533 3 55566778883 444
No 35
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=46.25 E-value=11 Score=25.74 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=21.8
Q ss_pred chhhhccCccCCCCCCCCCceEEEcCCCcccC
Q 032471 54 VPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCS 85 (140)
Q Consensus 54 ~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS 85 (140)
...| .|..|++.|.+....|..+..+.||.
T Consensus 27 ~~CF--~C~~C~~~L~~~~~~~~~~~g~~yC~ 56 (131)
T 2xjy_A 27 EDCL--SCDLCGCRLGEVGRRLYYKLGRKLCR 56 (131)
T ss_dssp TTTC--BCTTTCCBCSSTTCCEEEETTEEECH
T ss_pred HHHc--ccCcCCCccccCCCeEEEECCEEeec
Confidence 3455 57889999964445677788899994
No 36
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.21 E-value=11 Score=23.70 Aligned_cols=31 Identities=32% Similarity=0.766 Sum_probs=21.2
Q ss_pred chhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 54 VPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 54 ~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
..-| .|..|++.|..+ .|.-+..+.||. .|-
T Consensus 41 ~~CF--~C~~C~~~L~~~--~~~~~~~~~yC~-~cy 71 (82)
T 1x63_A 41 KDCF--TCSNCKQVIGTG--SFFPKGEDFYCV-TCH 71 (82)
T ss_dssp TTTC--CCSSSCCCCTTS--CEEEETTEEEEH-HHH
T ss_pred cccC--chhhCCCccCCC--ccEeeCCEEECH-HHH
Confidence 3345 578899999644 465677889984 554
No 37
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=46.10 E-value=8.4 Score=26.64 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=25.2
Q ss_pred CCchhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 52 FPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 52 ~~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
+-...| .|..|++.|.+....|..+..+.||. .|-
T Consensus 28 wH~~CF--~C~~C~~~L~~~~~~~~~~~g~~yC~-~cy 62 (122)
T 1m3v_A 28 WHSRCL--KCSSCQAQLGDIGTSSYTKSGMILCR-NDY 62 (122)
T ss_dssp ECHHHH--CCSSSCCCTTTSEECCEEETTEEECH-HHH
T ss_pred eHhhCC--CcCCCCCcccccCCeEEEECCeeecH-HHH
Confidence 344566 68899999964446687888899984 444
No 38
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.28 E-value=11 Score=24.34 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=15.8
Q ss_pred cCccCCCCCCCCCceEEE-cCCCcccCh
Q 032471 60 HCFLCKQTLLPGKDIYMY-KGDRAFCSV 86 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMY-RGe~AFCS~ 86 (140)
.|..|++.|. +...+.| +..+.||..
T Consensus 44 ~C~~C~~~L~-~~~~~~~~~~g~~yC~~ 70 (82)
T 2co8_A 44 RCHTCEATLW-PGGYEQHPGDGHFYCLQ 70 (82)
T ss_dssp BCSSSCCBCC-TTSEECCTTTCCCEETT
T ss_pred EEcCCCCCcC-CCceeEeCcCCEEEChH
Confidence 4666778884 3333334 667788853
No 39
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=45.14 E-value=12 Score=27.19 Aligned_cols=38 Identities=24% Similarity=0.562 Sum_probs=25.5
Q ss_pred chhhhccCccCCCCCCCCCceEEEcCCCcccChhhHHHHHH
Q 032471 54 VPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIF 94 (140)
Q Consensus 54 ~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~ 94 (140)
...| .|..|++.|..|...|+-...+.||. .|-.+.+.
T Consensus 91 ~~CF--~C~~C~~~L~~g~~f~~~~~g~~~C~-~c~~~~~~ 128 (169)
T 2rgt_A 91 LHCF--ACVVCKRQLATGDEFYLMEDSRLVCK-ADYETAKQ 128 (169)
T ss_dssp GGGC--BCTTTCCBCCTTCEEEECTTSCEEEH-HHHHHHHH
T ss_pred eCCC--cCCCCCCCCCCCCceEEccCCeEECH-HHHHHHhh
Confidence 3445 68889999976666666666689994 56544443
No 40
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.98 E-value=7.4 Score=24.76 Aligned_cols=22 Identities=23% Similarity=0.600 Sum_probs=11.8
Q ss_pred CccCCCCCCCCCceEEEcCCCccc
Q 032471 61 CFLCKQTLLPGKDIYMYKGDRAFC 84 (140)
Q Consensus 61 C~~CkK~L~~gkDIyMYRGe~AFC 84 (140)
|..|++.|. .+.|+.+..+.||
T Consensus 44 C~~C~~~L~--~~~~~~~~g~~yC 65 (79)
T 1x62_A 44 CTDCGTNLK--QKGHFFVEDQIYC 65 (79)
T ss_dssp CSSSCCCHH--HHCCEESSSCEEC
T ss_pred eCCCCCCCC--CCCeEeECCEEEC
Confidence 555566662 2235555566666
No 41
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=44.31 E-value=11 Score=22.97 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=21.7
Q ss_pred CchhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 53 PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 53 ~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
-...| .|..|++.|. + +.|.-+..+.||. .|-
T Consensus 28 H~~CF--~C~~C~~~L~-~-~~~~~~~g~~yC~-~~y 59 (66)
T 1nyp_A 28 HVEHF--VCAKCEKPFL-G-HRHYERKGLAYCE-THY 59 (66)
T ss_dssp ETTTC--BCTTTCCBCS-S-SCCEEETTEEECH-HHH
T ss_pred ccCcC--EECCCCCCCC-C-CceEeECCcEECH-HHH
Confidence 33455 5888999995 3 4566777889994 443
No 42
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.30 E-value=13 Score=23.30 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=19.7
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|..+ .|..+..+.||. .|-
T Consensus 43 ~C~~C~~~L~~~--~~~~~~~~~yC~-~~y 69 (80)
T 1x3h_A 43 VCGDCFTSFSTG--SFFELDGRPFCE-LHY 69 (80)
T ss_dssp BCSSSCCBSCSS--CCEESSSCEECH-HHH
T ss_pred ChhhCCCCCCCC--cEEeECCEEECH-HHH
Confidence 488899999644 366788899994 443
No 43
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.65 E-value=15 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=19.0
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|.. +.|.-+..+.||. .|-
T Consensus 53 ~C~~C~~~L~~--~~f~~~~g~~yC~-~cy 79 (90)
T 2dar_A 53 NCAHCKNTMAY--IGFVEEKGALYCE-LCY 79 (90)
T ss_dssp BCSSSCCBCSS--SCBEESSSCEECH-HHH
T ss_pred ccCCCCCCCCC--CEeEeECCEEECH-HHH
Confidence 57788888853 3466678888984 454
No 44
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.65 E-value=13 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.617 Sum_probs=18.0
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccC
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCS 85 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS 85 (140)
.|..|++.|. .+.|.-+..+.||.
T Consensus 37 ~C~~C~~~L~--~~~f~~~~g~~yC~ 60 (76)
T 1x68_A 37 NCGKCSVSLV--GKGFLTQNKEIFCQ 60 (76)
T ss_dssp BCTTTCCBCS--SSCEEEETTEEEET
T ss_pred ChhhCCCcCC--CCceEeECCEEECH
Confidence 5888899995 34566677889996
No 45
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.03 E-value=15 Score=22.46 Aligned_cols=32 Identities=25% Similarity=0.594 Sum_probs=21.9
Q ss_pred CchhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 53 PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 53 ~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
-...| .|..|++.|. .+.|..+..+.||. .|-
T Consensus 28 H~~CF--~C~~C~~~L~--~~~~~~~~~~~yC~-~cy 59 (70)
T 2d8z_A 28 HKECF--VCTACRKQLS--GQRFTARDDFAYCL-NCF 59 (70)
T ss_dssp ETTTS--BCSSSCCBCT--TSCCEESSSSEECH-HHH
T ss_pred CCCCC--ccCCCCCcCC--cCceEeeCCeEECH-HHH
Confidence 33455 5888999994 34676788889983 454
No 46
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=42.84 E-value=11 Score=22.45 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=19.4
Q ss_pred hhhhccCccCCCCCCCCCceEEEcCCCcccChhhHHHHHH
Q 032471 55 PTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIF 94 (140)
Q Consensus 55 ~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~ 94 (140)
..+...|..|.+.. ....---....|||.+|......
T Consensus 6 ~~~~~~C~~C~~~~---~~~C~~C~~~~YCs~~CQ~~~W~ 42 (52)
T 2jw6_A 6 ERKEQSCVNCGREA---MSECTGCHKVNYCSTFCQRKDWK 42 (52)
T ss_dssp -----CCSSSSSSC---SEECTTTCSSEESSHHHHHHHTT
T ss_pred cccCCcCCCCCCCC---cCcCCCCCCEeecCHHHHHHHHH
Confidence 34566788888742 11111123567999999865443
No 47
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.94 E-value=8.2 Score=24.04 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=17.7
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhh
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVEC 88 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~EC 88 (140)
.|..|++.|..+ + |.-+..+.|| ..|
T Consensus 41 ~C~~C~~~L~~~-~-~~~~~g~~yC-~~~ 66 (77)
T 1g47_A 41 VCAQCFQQFPEG-L-FYEFEGRKYC-EHD 66 (77)
T ss_dssp CCTTTCCCCGGG-C-SEEETTEEEC-HHH
T ss_pred eECCCCCCCCCC-C-eEeECCeEeC-HHH
Confidence 477888999654 4 5556678898 344
No 48
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.19 E-value=12 Score=24.17 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=18.6
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccCh
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSV 86 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ 86 (140)
.|..|++.|. + .|..+..+.||..
T Consensus 44 ~C~~C~~~L~-~--~~~~~~g~~yC~~ 67 (80)
T 2dj7_A 44 KCQTCSVILT-G--EYISKDGVPYCES 67 (80)
T ss_dssp BCSSSCCBCS-S--CCEEETTEEECTT
T ss_pred CcCcCCCCcC-C--CeEEECCEEECHH
Confidence 5788999995 3 4777888999964
No 49
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=40.70 E-value=10 Score=26.99 Aligned_cols=22 Identities=50% Similarity=0.643 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCCCcchhhhhcceeeeeC
Q 032471 5 SIVLENQKHGGFNKKSPQVINKATMIINN 33 (140)
Q Consensus 5 si~le~~~~~~~~~~~~qvI~K~t~~~~~ 33 (140)
||+|+.| -++|+||.+| |.-|+
T Consensus 20 SI~ltsq------Drtp~vI~~a-l~Khn 41 (87)
T 1lfd_A 20 SILVTSQ------DKAPTVIRKA-MDKHN 41 (87)
T ss_dssp EEEEETT------CBHHHHHHHH-HHHTT
T ss_pred EEEEecC------CCcHHHHHHH-HHHcC
Confidence 4555554 5899999996 44444
No 50
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.90 E-value=17 Score=22.27 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=20.2
Q ss_pred chhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 54 VPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 54 ~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
...| .|..|++.|..+ . |.-+..+.||. .|-
T Consensus 31 ~~CF--~C~~C~~~L~~~-~-~~~~~~~~yC~-~cy 61 (72)
T 1wyh_A 31 EHCF--LCSGCEQPLGSR-S-FVPDKGAHYCV-PCY 61 (72)
T ss_dssp TTTC--BCTTTCCBTTTS-C-EEEETTEEEEH-HHH
T ss_pred cccC--eECCCCCcCCCC-c-cCCcCCeEECH-HHH
Confidence 3445 478889999543 3 55566788984 454
No 51
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=39.50 E-value=28 Score=23.29 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=22.9
Q ss_pred hhhhccCccCCCCCCCCCceEEEcCCCcccCh
Q 032471 55 PTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSV 86 (140)
Q Consensus 55 ~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ 86 (140)
..+-..|..|+|+|+- -.|--|-..-||+.
T Consensus 12 k~~~~rC~~C~kkvgl--~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGL--TGFMCRCGTTFCGS 41 (64)
T ss_dssp CSSCCCCTTTCCCCCT--TCEECSSSCEECTT
T ss_pred CCcCCcChhhCCccCc--cCEEeecCCEeccc
Confidence 3455789999999852 25777899999985
No 52
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=39.21 E-value=8.4 Score=27.18 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=10.4
Q ss_pred hhhhccCccCCCCCC
Q 032471 55 PTFLQHCFLCKQTLL 69 (140)
Q Consensus 55 ~~FL~~C~~CkK~L~ 69 (140)
..|...|..|++.|.
T Consensus 58 ~~~~~~C~~C~~~I~ 72 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIA 72 (123)
T ss_dssp CSSCSBBSSSSSBCC
T ss_pred CccCCcCcCCCCCcC
Confidence 456677777777774
No 53
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.03 E-value=13 Score=25.34 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=22.4
Q ss_pred CchhhhccCccCCCCCCCCCceEEEcCCCcccCh
Q 032471 53 PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSV 86 (140)
Q Consensus 53 ~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ 86 (140)
-...| .|..|++.|.+....|..+..+.||..
T Consensus 27 H~~CF--~C~~C~~~L~~~g~~~~~~~g~~yC~~ 58 (114)
T 1j2o_A 27 HEDCL--SCDLCGCRLGEVGRRLYYKLGRKLCRR 58 (114)
T ss_dssp CTTTC--CCSSSCSCCCCSSSCCCCBTTBCCCHH
T ss_pred HHhcC--cccccCCchhcCCCeeEEECCeeechH
Confidence 34455 588899999643356777888999943
No 54
>4fc8_A Transcription protein RTR1; zinc finger; 2.50A {Kluyveromyces lactis}
Probab=39.02 E-value=12 Score=30.29 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=23.5
Q ss_pred hccCc--cCCCCCCCCCceE-------------EEcCCCcccChhhHHHHHHhhH
Q 032471 58 LQHCF--LCKQTLLPGKDIY-------------MYKGDRAFCSVECRCRQIFMDE 97 (140)
Q Consensus 58 L~~C~--~CkK~L~~gkDIy-------------MYRGe~AFCS~ECR~~qI~~DE 97 (140)
...|. +|.+.+..-++-| .|-..+-|||.+|-..-..+-.
T Consensus 70 ~k~CGYPLC~~~~~~~~~ky~Is~~tk~~~~nkvyd~l~~fCS~~Cy~aS~f~~~ 124 (219)
T 4fc8_A 70 VKRCGYPLCSKSQARVRDPFADVQMTNFLRQNNPYAYLTEYCTKAHFRCSQFYQF 124 (219)
T ss_dssp TTCCSSTTCCSCCSCC-------------------CGGGTCSSHHHHHHHHHHHT
T ss_pred cccCCCCCCCCcccccCCCceeeeccccccccCcHHHHHhhhhHHHHHHHHHHHH
Confidence 35664 5888775433333 4555689999999876665543
No 55
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.34 E-value=19 Score=22.72 Aligned_cols=30 Identities=20% Similarity=0.635 Sum_probs=21.2
Q ss_pred CCchhhhccCccCCCCCCCCCceEEEcCCCcccC
Q 032471 52 FPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCS 85 (140)
Q Consensus 52 ~~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS 85 (140)
+-...| .|..|++.|. .+.|.-++.+.||.
T Consensus 39 ~H~~CF--~C~~C~~~L~--~~~f~~~~~~~~C~ 68 (82)
T 2ehe_A 39 FHEGCF--RCCRCQRSLA--DEPFTCQDSELLCN 68 (82)
T ss_dssp CBTTTS--BCTTTCCBCS--SCCEEEETTEEEET
T ss_pred ccccCC--eecCCCCccC--CCccEeeCCEEECH
Confidence 344455 5888999995 33576778899995
No 56
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.56 E-value=14 Score=24.00 Aligned_cols=23 Identities=30% Similarity=0.738 Sum_probs=15.5
Q ss_pred cCccCCCCCCCCCceEEEcCCCccc
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFC 84 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFC 84 (140)
.|..|++.|..+ + |.-+..+.||
T Consensus 44 ~C~~C~~~L~~~-~-~~~~~g~~yC 66 (91)
T 2d8y_A 44 RCSYCNNKLSLG-T-YASLHGRIYC 66 (91)
T ss_dssp BCTTTCCBCCTT-T-CCCSSSCCCC
T ss_pred eeCCCCCCCCCC-C-cEeECCEEEC
Confidence 467778888543 3 5556677887
No 57
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=36.40 E-value=13 Score=26.51 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=12.5
Q ss_pred CCcchhhhhcceeeeeCCC
Q 032471 17 NKKSPQVINKATMIINNKP 35 (140)
Q Consensus 17 ~~~~~qvI~K~t~~~~~~~ 35 (140)
+-++|+||.+| |--|+..
T Consensus 29 qDktp~vI~~a-l~Khnl~ 46 (90)
T 1rlf_A 29 QDKAPSVISRV-LKKNNRD 46 (90)
T ss_dssp TCCCTTHHHHH-HHHTTTT
T ss_pred CCCcHHHHHHH-HHHcCCC
Confidence 36899999996 4445433
No 58
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=32.16 E-value=34 Score=25.20 Aligned_cols=27 Identities=22% Similarity=0.548 Sum_probs=17.7
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.|..|++.|..+ .|.-+.++.|| ..|-
T Consensus 144 ~C~~C~~~L~~~--~~~~~~g~~yC-~~cy 170 (192)
T 1b8t_A 144 RCAKCGKSLEST--TLADKDGEIYC-KGCY 170 (192)
T ss_dssp BCTTTCCBCCSS--SEEEETTEEEE-HHHH
T ss_pred CccccCCCCCCC--cccccCCEEeC-HHHH
Confidence 467777888533 36667778888 5554
No 59
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=31.37 E-value=17 Score=26.99 Aligned_cols=15 Identities=53% Similarity=0.643 Sum_probs=11.3
Q ss_pred CcchhhhhcceeeeeC
Q 032471 18 KKSPQVINKATMIINN 33 (140)
Q Consensus 18 ~~~~qvI~K~t~~~~~ 33 (140)
-++|+||.+| |--|+
T Consensus 52 Dktp~VI~ra-L~Khn 66 (115)
T 1rax_A 52 DKAPAVIRKA-MDKHN 66 (115)
T ss_dssp CCHHHHHHHH-HHHHT
T ss_pred CCcHHHHHHH-HHHcC
Confidence 5899999996 44454
No 60
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.66 E-value=30 Score=22.04 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=22.8
Q ss_pred CCCchhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 51 TFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 51 ~~~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
.+-...| .|..|++.|..+ .| -+..+.||. .|-
T Consensus 36 ~~H~~CF--~C~~C~~~L~~~--~f-~~~g~~yC~-~cy 68 (79)
T 2cor_A 36 PYHPDHF--NCANCGKELTAD--AR-ELKGELYCL-PCH 68 (79)
T ss_dssp CCCTTTS--BCSSSCCBCCTT--CE-EETTEEECH-HHH
T ss_pred eeCCCCC--EeCCCCCccCCC--CE-eECCEEeCH-HHH
Confidence 4555667 689999999644 36 567788984 443
No 61
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=29.13 E-value=25 Score=21.93 Aligned_cols=34 Identities=12% Similarity=0.378 Sum_probs=20.4
Q ss_pred hccCccCCCCCCCCCceEEEcCCCcccChhhHHHHHH
Q 032471 58 LQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIF 94 (140)
Q Consensus 58 L~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~ 94 (140)
...|..|.+. .....---....|||.+|......
T Consensus 17 ~~~C~~C~~~---~~~~Cs~C~~~~YCs~~CQ~~~W~ 50 (64)
T 2odd_A 17 SESCWNCGRK---ASETCSGCNTARYCGSFCQHKDWE 50 (64)
T ss_dssp SSSCTTTSSC---CCEEETTTSCCEESSHHHHHHHHH
T ss_pred CCcCccccCC---CcccCCCCCChhhCCHHHHHHHHH
Confidence 4568888873 222221223567999999865544
No 62
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=28.51 E-value=28 Score=22.64 Aligned_cols=24 Identities=21% Similarity=0.700 Sum_probs=17.0
Q ss_pred cCccCCCCCCCCCceEEEcCCCcccC
Q 032471 60 HCFLCKQTLLPGKDIYMYKGDRAFCS 85 (140)
Q Consensus 60 ~C~~CkK~L~~gkDIyMYRGe~AFCS 85 (140)
.|..|++.|. .+.|.-+..+.||.
T Consensus 35 ~C~~C~~~L~--~~~~~~~~g~~yC~ 58 (101)
T 2cup_A 35 RCAKCLHPLA--NETFVAKDNKILCN 58 (101)
T ss_dssp CCSSSCCCTT--SSCCEEETTEEECH
T ss_pred cccccCCCCC--cCeeECcCCEEECh
Confidence 4778899993 34566677789983
No 63
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.46 E-value=32 Score=25.33 Aligned_cols=34 Identities=29% Similarity=0.792 Sum_probs=22.3
Q ss_pred CCchhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471 52 FPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR 89 (140)
Q Consensus 52 ~~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR 89 (140)
+-...| .|..|++.|..|.. |.-+..+.|| ..|-
T Consensus 93 ~H~~CF--~C~~C~~~L~~g~~-f~~~~g~~yC-~~c~ 126 (188)
T 1rut_X 93 YHLKCF--TCSTCRNRLVPGDR-FHYINGSLFC-EHDR 126 (188)
T ss_dssp ECGGGC--BCTTTCCBCCTTCE-EEEETTEEEE-GGGC
T ss_pred EeCCCC--eECCCCCCCCCCCe-EEEECCeEEC-HHHH
Confidence 344455 58889999965554 4445667999 4554
No 64
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.29 E-value=39 Score=21.23 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=20.1
Q ss_pred chhhhccCccCCCCCCCCCceEEEc-CCCcccChhhH
Q 032471 54 VPTFLQHCFLCKQTLLPGKDIYMYK-GDRAFCSVECR 89 (140)
Q Consensus 54 ~~~FL~~C~~CkK~L~~gkDIyMYR-Ge~AFCS~ECR 89 (140)
...| .|..|++.|. .+.|... ..+.||. .|-
T Consensus 39 ~~CF--~C~~C~~~L~--~~~f~~~~~g~~yC~-~cy 70 (81)
T 2dlo_A 39 PGCF--TCVVCHRGLD--GIPFTVDATSQIHCI-EDF 70 (81)
T ss_dssp TTTC--BCSSSCCBCT--TSCEECCTTCCCEEH-HHH
T ss_pred HHhc--CcccCCCccC--CCeeEECCCCEEECH-HHH
Confidence 3455 5888999995 3456555 4689984 443
No 65
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=24.81 E-value=49 Score=29.35 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=26.1
Q ss_pred hhhccCccCCCCCCCC---------CceEEEcCCC-cccChhhHH
Q 032471 56 TFLQHCFLCKQTLLPG---------KDIYMYKGDR-AFCSVECRC 90 (140)
Q Consensus 56 ~FL~~C~~CkK~L~~g---------kDIyMYRGe~-AFCS~ECR~ 90 (140)
.+-..|..|.-++.-. -.+-.|.|.+ .|||..|+.
T Consensus 394 ~lp~~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~ 438 (511)
T 3u52_A 394 TLPQLCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCD 438 (511)
T ss_dssp SCBCBCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHH
T ss_pred CCCCccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHH
Confidence 3346899999988532 2356789975 799999994
No 66
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=24.47 E-value=35 Score=21.16 Aligned_cols=34 Identities=12% Similarity=0.361 Sum_probs=20.2
Q ss_pred hccCccCCCCCCCCCceEEEcCCCcccChhhHHHHHH
Q 032471 58 LQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIF 94 (140)
Q Consensus 58 L~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~ 94 (140)
...|..|.+.- ....---....|||.||......
T Consensus 15 ~~~C~~C~~~~---~~~Cs~C~~v~YCs~~CQ~~~W~ 48 (60)
T 2dj8_A 15 SESCWNCGRKA---SETCSGCNTARYCGSFCQHKDWE 48 (60)
T ss_dssp SCCCSSSCSCC---CEECTTTSCCEESSHHHHHHTHH
T ss_pred CcccccCCCCC---cccCCCCCCEeeeCHHHHHHHHH
Confidence 45688888731 11111123567999999865544
No 67
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=24.16 E-value=27 Score=26.74 Aligned_cols=15 Identities=53% Similarity=0.643 Sum_probs=11.2
Q ss_pred CcchhhhhcceeeeeC
Q 032471 18 KKSPQVINKATMIINN 33 (140)
Q Consensus 18 ~~~~qvI~K~t~~~~~ 33 (140)
-++|+||.+| |--++
T Consensus 49 Drtp~VI~rA-L~Khn 63 (140)
T 3kh0_A 49 DKAPAVIRKA-MDKHN 63 (140)
T ss_dssp CBHHHHHHHH-HHHTT
T ss_pred cccHHHHHHH-HHHhC
Confidence 5899999996 44444
No 68
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=20.11 E-value=19 Score=26.30 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=11.9
Q ss_pred CCcchhhhhcceeeeeC
Q 032471 17 NKKSPQVINKATMIINN 33 (140)
Q Consensus 17 ~~~~~qvI~K~t~~~~~ 33 (140)
+-++|+||.+| |--|+
T Consensus 41 qDrtp~VI~ra-L~Khn 56 (103)
T 1ef5_A 41 QDKTPAVIQRA-MSKHN 56 (103)
T ss_dssp CCCTHHHHHHH-TTTTT
T ss_pred CCCcHHHHHHH-HHHcC
Confidence 47999999996 44444
Done!