BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032472
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 6 GFRFKPTNEEI-ISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
GFRF PT+EE+ + L +K DFS+ I EID Y FDPW LP + EK WYF+
Sbjct: 23 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFS 80
Query: 65 ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
R K + +R SGYWK TG I + + +G KK L F + A K KT
Sbjct: 81 PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGK-APKGTKTN 137
Query: 125 WVMHE 129
W+MHE
Sbjct: 138 WIMHE 142
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 6 GFRFKPTNEEI-ISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
GFRF PT+EE+ + L +K DFS+ I EID Y FDPW LP + EK WYF+
Sbjct: 20 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFS 77
Query: 65 ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
R K + +R SGYWK TG I + + +G KK L F + A K KT
Sbjct: 78 PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGK-APKGTKTN 134
Query: 125 WVMHE 129
W+MHE
Sbjct: 135 WIMHE 139
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 6 GFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
GFRF PT++E++ L +K V I E+D Y FDPWDLP + E WYF+
Sbjct: 18 GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE--WYFFT 75
Query: 65 ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
R K + +R +GYWK TG + + T +G KK L F + A + KT+
Sbjct: 76 PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRT--LGIKKALVFYAGK-APRGVKTD 132
Query: 125 WVMHEISV 132
W+MHE +
Sbjct: 133 WIMHEYRL 140
>pdb|1Z8M|A Chain A, Solution Structure Of The Conserved Hypothtical Protein
Hp0894 From Helicobacter Pylori
Length = 88
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 4 LVGFRFKPTNEEIISLLKKKRLDPDFSVHTIK 35
L GF NE I++L KK+ LDP F H +K
Sbjct: 19 LNGFDDSVLNEVILTLRKKEPLDPQFQDHALK 50
>pdb|2FTR|A Chain A, Crystal Structure Of An Ethyl Tert-Butyl Ether D (Ethd)
Family Protein (Bh0200) From Bacillus Halodurans C-125
At 1.40 A Resolution
pdb|2FTR|B Chain B, Crystal Structure Of An Ethyl Tert-Butyl Ether D (Ethd)
Family Protein (Bh0200) From Bacillus Halodurans C-125
At 1.40 A Resolution
Length = 108
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 57 EKVWYFYCERYYKSAKSKQAHRRTKSGYWKVTGK 90
E +Y CE YY +S Q RT G K +GK
Sbjct: 57 ESKFYLXCEXYYDDHESLQQAXRTDEG--KASGK 88
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 45 WDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAH 77
W+ PR E QC +K Y + +K+A ++ H
Sbjct: 198 WEFPRIGEFQCYDK----YLKADFKAAVARAGH 226
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 45 WDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAH 77
W+ PR E QC +K Y + +K+A ++ H
Sbjct: 194 WEFPRIGEFQCYDK----YLKADFKAAVARAGH 222
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 25.4 bits (54), Expect = 9.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 45 WDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGS 92
W P E QC +K Y A K+A ++ + W++ GKG+
Sbjct: 199 WVFPGIGEFQCYDK---------YMVADWKEAVKQAGNADWEMPGKGA 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,452,828
Number of Sequences: 62578
Number of extensions: 171455
Number of successful extensions: 382
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 10
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)