Query 032472
Match_columns 140
No_of_seqs 112 out of 844
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 23:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.8E-54 1.3E-58 317.2 10.7 131 1-136 13-144 (174)
2 1ut7_A No apical meristem prot 100.0 1.5E-53 5.1E-58 313.6 10.3 131 1-136 15-146 (171)
3 1cmb_A Met APO-repressor; DNA- 67.4 6.6 0.00022 25.2 3.6 37 10-51 50-88 (104)
4 1ldd_A APC2WHB, anaphase promo 66.2 3.2 0.00011 25.6 1.9 27 3-29 36-63 (74)
5 3dct_B Nuclear receptor coacti 45.2 10 0.00035 17.4 1.2 14 10-23 2-15 (21)
6 2jv2_A Putative uncharacterize 27.8 30 0.001 21.5 1.8 29 13-41 26-54 (83)
7 3vdj_A Circumsporozoite (CS) p 23.2 44 0.0015 20.6 1.9 17 7-23 2-18 (77)
8 3g1g_A GAG polyprotein, capsid 22.8 49 0.0017 20.9 2.1 21 10-30 62-82 (87)
9 3nr5_A MAF1, repressor of RNA 22.5 16 0.00054 25.9 -0.3 13 34-46 119-131 (164)
10 1q1v_A DEK protein; winged-hel 18.9 76 0.0026 18.9 2.3 20 10-29 11-30 (70)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.8e-54 Score=317.20 Aligned_cols=131 Identities=35% Similarity=0.742 Sum_probs=118.7
Q ss_pred CCCCCcceecCCHHHHHH-HHHhhhcCCCCCcccEEeccCCCCCCCCCCCcccccccCceEEEEEeeccccccCcccccc
Q 032472 1 MDSLVGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRR 79 (140)
Q Consensus 1 ~~lp~G~rF~PtdeELv~-yL~~ki~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~~~r~~R~ 79 (140)
+.|||||||+|||||||. ||++|+.|.+++.++|.++|||++|||+||+.+.. ++.+||||+++.+++++|.|.+|+
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSCEE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCceee
Confidence 579999999999999999 99999999999999999999999999999998754 578999999999999999999999
Q ss_pred CCCcEEEecCCceeEEeCCCCeEEEeEEEeeeeecCCCCCCCCcCeEEEEEEeCCCC
Q 032472 80 TKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTEWVMHEISVGDDP 136 (140)
Q Consensus 80 ~~~G~W~~~g~~~~i~~~~~g~~vG~k~~~~f~~~~~~~~~~kt~W~M~EY~l~~~~ 136 (140)
+++|+||++|+++.|.. +|.+||+|++|+||.++ ++++.+|+|+||||+|.++.
T Consensus 91 t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~-~p~g~kT~WvMhEY~L~~~~ 144 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGK-APRGVKTDWIMHEYRLADAG 144 (174)
T ss_dssp ETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESS-TTSCEEEEEEEEEEEECSCC
T ss_pred cCCceEccCCCCcEEee--CCcEEEEEEEEEEecCC-CCCCCcCCeEEEEEEeCCCC
Confidence 99999999999999985 47899999999999999 89999999999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.5e-53 Score=313.64 Aligned_cols=131 Identities=40% Similarity=0.721 Sum_probs=116.6
Q ss_pred CCCCCcceecCCHHHHHH-HHHhhhcCCCCCcccEEeccCCCCCCCCCCCcccccccCceEEEEEeeccccccCcccccc
Q 032472 1 MDSLVGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRR 79 (140)
Q Consensus 1 ~~lp~G~rF~PtdeELv~-yL~~ki~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~~~r~~R~ 79 (140)
+.|||||||+|||||||. ||++|+.|.+++.++|+++|||.+|||+||+.... ++++||||+++.+++++|.|++|+
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~--g~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CCEE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhc--CCccEEEEeccccccCCCCccccc
Confidence 479999999999999999 99999999999999999999999999999988654 688999999999999999999999
Q ss_pred CCCcEEEecCCceeEEeCCCCeEEEeEEEeeeeecCCCCCCCCcCeEEEEEEeCCCC
Q 032472 80 TKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTEWVMHEISVGDDP 136 (140)
Q Consensus 80 ~~~G~W~~~g~~~~i~~~~~g~~vG~k~~~~f~~~~~~~~~~kt~W~M~EY~l~~~~ 136 (140)
+++|+||++|+++.|.. ++.+||+|++|+||.++ ++++.+|+|+||||+|.+++
T Consensus 93 t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~-~p~g~kT~WvMhEY~l~~~~ 146 (171)
T 1ut7_A 93 AGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGK-APKGTKTNWIMHEYRLIEPS 146 (171)
T ss_dssp ETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESS-TTSCEEEEEEEEEEEECCCC
T ss_pred CCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCc-CCCCCcCCeEEEEEEcCCCc
Confidence 99999999999999996 46999999999999999 88999999999999999864
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=67.44 E-value=6.6 Score=25.19 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=29.6
Q ss_pred cCCHHHHHH--HHHhhhcCCCCCcccEEeccCCCCCCCCCCCcc
Q 032472 10 KPTNEEIIS--LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHS 51 (140)
Q Consensus 10 ~PtdeELv~--yL~~ki~g~~~~~~~I~~~Dvy~~~P~~L~~~~ 51 (140)
|-|..||++ ||. -..|+|+|.+ .|+-...|..+|...
T Consensus 50 HATNSELLCEAFLH-A~TGQPLP~D----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLH-AFTGQPLPDD----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHH-HHHCCCCCCG----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHH-HhcCCCCCCc----hhhhhcCCccchHHH
Confidence 568899999 654 5689999964 788889999998654
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=66.16 E-value=3.2 Score=25.64 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=23.0
Q ss_pred CCCcceecC-CHHHHHHHHHhhhcCCCC
Q 032472 3 SLVGFRFKP-TNEEIISLLKKKRLDPDF 29 (140)
Q Consensus 3 lp~G~rF~P-tdeELv~yL~~ki~g~~~ 29 (140)
.|.|+.|.. |++||-.||..++....+
T Consensus 36 ~~~~~~~~~it~~eL~~fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEGYLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhCCeE
Confidence 367899998 999999999999987755
No 5
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=45.22 E-value=10 Score=17.37 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=10.5
Q ss_pred cCCHHHHHHHHHhh
Q 032472 10 KPTNEEIISLLKKK 23 (140)
Q Consensus 10 ~PtdeELv~yL~~k 23 (140)
.+.|.+|+.||.-|
T Consensus 2 e~kdhqllrylldk 15 (21)
T 3dct_B 2 ESKDHQLLRYLLDK 15 (26)
T ss_pred chhHHHHHHHHHcc
Confidence 36788999988654
No 6
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=27.83 E-value=30 Score=21.51 Aligned_cols=29 Identities=7% Similarity=0.170 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhcCCCCCcccEEeccCCC
Q 032472 13 NEEIISLLKKKRLDPDFSVHTIKEIDFYS 41 (140)
Q Consensus 13 deELv~yL~~ki~g~~~~~~~I~~~Dvy~ 41 (140)
+.++..||++++.|.|+...-+..+++++
T Consensus 26 ~~~~~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 26 PPDFVDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp CHHHHHHHHHHHTTSEECTTCEEEEEETT
T ss_pred CccHHHHHHHHHCCCCccCCCEEEEeeCC
Confidence 45665599999999998754333366544
No 7
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=23.16 E-value=44 Score=20.61 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=13.0
Q ss_pred ceecCCHHHHHHHHHhh
Q 032472 7 FRFKPTNEEIISLLKKK 23 (140)
Q Consensus 7 ~rF~PtdeELv~yL~~k 23 (140)
+.|.|+++++-.||.+-
T Consensus 2 ~~~~p~~~~i~~~l~ki 18 (77)
T 3vdj_A 2 VEFEPSDKHIKEYLNKI 18 (77)
T ss_dssp CCCSCCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 46889988877798754
No 8
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=22.83 E-value=49 Score=20.90 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=12.7
Q ss_pred cCCHHHHHHHHHhhhcCCCCC
Q 032472 10 KPTNEEIISLLKKKRLDPDFS 30 (140)
Q Consensus 10 ~PtdeELv~yL~~ki~g~~~~ 30 (140)
.|+.+|||.|+..|..-.|+.
T Consensus 62 ~~~~~e~Ik~~l~~~~~~~~~ 82 (87)
T 3g1g_A 62 LTTPGEIIKYVLDRQKTAPLT 82 (87)
T ss_dssp CCSHHHHHHHHHHHHC-----
T ss_pred CCChHHHHHHHHHHhhcCCcc
Confidence 367899999887776665554
No 9
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=22.54 E-value=16 Score=25.91 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=10.6
Q ss_pred EEeccCCCCCCCC
Q 032472 34 IKEIDFYSFDPWD 46 (140)
Q Consensus 34 I~~~Dvy~~~P~~ 46 (140)
+.++|||++.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 5678999999983
No 10
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=18.91 E-value=76 Score=18.95 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=15.4
Q ss_pred cCCHHHHHHHHHhhhcCCCC
Q 032472 10 KPTNEEIISLLKKKRLDPDF 29 (140)
Q Consensus 10 ~PtdeELv~yL~~ki~g~~~ 29 (140)
.|||+||..-++.-+....+
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL 30 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANL 30 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCG
T ss_pred CcCHHHHHHHHHHHHHhCCH
Confidence 59999999877776666554
Done!