Query 032476
Match_columns 140
No_of_seqs 113 out of 771
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 00:02:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_J 50S ribosomal protein L 100.0 8.2E-62 2.8E-66 369.7 12.3 140 1-140 1-141 (141)
2 3u5e_V L17A, YL32, 60S ribosom 100.0 6.5E-59 2.2E-63 352.4 12.9 136 5-140 2-137 (137)
3 1vq8_K 50S ribosomal protein L 100.0 3.5E-57 1.2E-61 341.2 12.6 131 10-140 2-132 (132)
4 3v2d_O 50S ribosomal protein L 100.0 2.4E-54 8.4E-59 322.0 12.7 118 19-140 1-122 (122)
5 3bbo_M Ribosomal protein L14; 100.0 2.5E-54 8.5E-59 321.6 10.4 118 19-140 1-121 (121)
6 1whi_A Ribosomal protein L14; 100.0 7.9E-54 2.7E-58 319.3 11.9 118 19-140 1-122 (122)
7 3r8s_K 50S ribosomal protein L 100.0 1E-53 3.5E-58 318.7 10.7 117 19-139 1-122 (122)
8 2ftc_K 39S ribosomal protein L 62.9 11 0.00036 26.5 4.4 33 54-86 3-35 (98)
9 2qqr_A JMJC domain-containing 56.9 24 0.00084 25.4 5.6 42 53-104 4-45 (118)
10 2o5u_A Thioesterase; putative 50.5 36 0.0012 23.0 5.5 70 54-136 76-147 (148)
11 3v2d_T 50S ribosomal protein L 47.9 27 0.00094 26.1 4.7 35 52-86 19-54 (146)
12 2xdp_A Lysine-specific demethy 47.6 17 0.00057 26.5 3.4 42 53-104 5-46 (123)
13 3r8s_P 50S ribosomal protein L 47.6 23 0.00079 25.4 4.1 35 52-86 16-51 (114)
14 2egj_A Hypothetical protein AQ 47.4 53 0.0018 21.0 6.0 61 54-129 66-126 (128)
15 3r87_A Putative uncharacterize 46.6 58 0.002 21.6 6.0 63 54-129 69-132 (135)
16 3h9w_A Diguanylate cyclase wit 44.6 35 0.0012 21.0 4.3 30 85-114 69-98 (115)
17 1s5u_A Protein YBGC; structura 42.2 57 0.002 21.3 5.3 65 54-131 71-136 (138)
18 3ck1_A Putative thioesterase; 41.7 52 0.0018 22.0 5.1 66 54-132 71-137 (150)
19 2hlj_A Hypothetical protein; p 39.0 73 0.0025 21.4 5.6 68 54-134 69-138 (157)
20 2gf6_A Conserved hypothetical 37.6 83 0.0028 20.4 6.6 62 54-129 70-132 (135)
21 2oaf_A Thioesterase superfamil 37.1 86 0.0029 21.2 5.7 65 54-132 83-148 (151)
22 1njk_A Hypothetical protein YB 34.9 51 0.0017 22.6 4.3 66 54-132 85-152 (156)
23 2w3x_A CALE7; hydrolase, hotdo 34.7 99 0.0034 20.5 6.2 68 54-134 70-142 (147)
24 2cye_A TTHA1846, putative thio 31.8 1.1E+02 0.0036 19.9 6.2 64 54-132 65-128 (133)
25 3f1p_A Endothelial PAS domain- 31.3 39 0.0013 20.7 2.9 30 85-114 73-103 (117)
26 3icy_A Sensor protein; sensory 30.7 85 0.0029 18.6 4.4 32 83-114 78-109 (118)
27 3f1p_B ARYL hydrocarbon recept 30.6 42 0.0014 20.8 3.0 30 85-114 77-107 (121)
28 2zjr_M 50S ribosomal protein L 29.6 31 0.0011 26.3 2.5 35 52-86 24-59 (166)
29 3mr0_A Sensory box histidine k 27.9 88 0.003 20.2 4.3 35 84-120 84-118 (142)
30 2oiw_A Putative 4-hydroxybenzo 27.8 1.3E+02 0.0044 19.6 5.9 66 54-133 65-131 (136)
31 1fl0_A Endothelial-monocyte ac 27.7 1.7E+02 0.0057 21.9 6.3 86 20-118 8-103 (171)
32 3qr8_A GPV, baseplate assembly 26.2 2E+02 0.0067 21.6 6.6 67 10-84 8-84 (211)
33 3u28_C H/ACA ribonucleoprotein 24.8 49 0.0017 23.7 2.7 26 94-122 49-76 (114)
34 1v74_A Colicin D; colicin D - 24.2 76 0.0026 22.6 3.5 32 88-119 59-92 (107)
35 3ers_X TRNA-binding protein YG 23.9 83 0.0028 22.2 3.8 24 20-43 14-37 (118)
36 1lo7_A 4-hydroxybenzoyl-COA th 23.8 1.4E+02 0.0047 19.4 4.8 66 54-129 71-140 (141)
37 2ali_A Hypothetical protein PA 23.1 1.5E+02 0.005 20.5 5.0 64 54-130 90-156 (158)
38 3bbo_R Ribosomal protein L19; 22.6 12 0.00042 30.0 -1.0 35 52-86 140-174 (233)
39 2eqn_A Hypothetical protein LO 22.3 41 0.0014 23.3 1.8 25 98-123 50-76 (103)
40 3hm0_A Probable thioesterase; 21.7 1.9E+02 0.0063 20.4 5.4 62 54-129 104-165 (167)
41 1z54_A Probable thioesterase; 21.4 1.7E+02 0.0058 18.7 5.8 64 54-132 66-129 (132)
42 3nja_A Probable ggdef family p 21.4 1.4E+02 0.0046 17.6 4.3 30 85-114 83-112 (125)
43 1n9l_A PHOT-LOV1, putative blu 20.7 1.1E+02 0.0037 18.9 3.5 27 88-114 73-99 (109)
44 4i4j_A ACP-polyene thioesteras 20.7 2.1E+02 0.0072 19.6 6.0 73 54-132 75-147 (159)
No 1
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.2e-62 Score=369.72 Aligned_cols=140 Identities=52% Similarity=0.817 Sum_probs=127.7
Q ss_pred CCCCCCCCCCc-cccccccCcccccEEEEecCCCCceEEEEEEeccccccCCCCCcccCceEEEEEeecCCCCccceeeE
Q 032476 1 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPA 79 (140)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~mIq~~T~L~V~DNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~~A 79 (140)
||||||||.++ .++++++|||.+|+|+|+|||||++++||+|+++++.++|+++|++||+|++|||++.|+.|+|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~kg~V~kA 80 (141)
T 3j21_J 1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRA 80 (141)
T ss_dssp ---------CCCCCSBCCCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTTTTCEEEE
T ss_pred CCccccCCccccccccccceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCCcCceEEE
Confidence 89999999998 89999999999999999999999999999999987777788899999999999999999999999999
Q ss_pred EEEeeeceeeecCCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhhhhhhhcccccC
Q 032476 80 VIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140 (140)
Q Consensus 80 vIVrtkk~~~R~dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~~Ki~slA~~iv 140 (140)
|||||+++++|+||++++|||||+||||++++|+|||||||||+|||++|+||+|||+.||
T Consensus 81 VIVRtkk~~rR~dGs~i~FddNA~VLin~~g~p~GTRI~GPVarElr~~~~KI~SlA~~iv 141 (141)
T 3j21_J 81 VIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141 (141)
T ss_dssp EEEECSSCEECTTSCEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHHHCHHHHHHCSEEC
T ss_pred EEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccccHHHHhhchHHhhcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 2
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=6.5e-59 Score=352.36 Aligned_cols=136 Identities=75% Similarity=1.280 Sum_probs=133.0
Q ss_pred CCCCCCccccccccCcccccEEEEecCCCCceEEEEEEeccccccCCCCCcccCceEEEEEeecCCCCccceeeEEEEee
Q 032476 5 GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQ 84 (140)
Q Consensus 5 ~~~~~~~~~~~~~~mIq~~T~L~V~DNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrt 84 (140)
+|||.++.+++++++||++|+|+|+|||||++++||+|++++++++|+++|++||+|++|||++.|+.|+|+++||||||
T Consensus 2 ~~~~~~~~~~~~~~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~k~~V~~AVIVRt 81 (137)
T 3u5e_V 2 SGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQ 81 (137)
T ss_dssp CCSSCCSCCCCCCCCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTTTTSCEEEEEEEC
T ss_pred CccccCcceeeecccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCCCCcEEEEEEEEe
Confidence 38999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred eceeeecCCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhhhhhhhcccccC
Q 032476 85 RKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140 (140)
Q Consensus 85 kk~~~R~dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~~Ki~slA~~iv 140 (140)
+++++|+||++++|||||+||+|++++|+|||||||||+|||++|+||+|||++++
T Consensus 82 kk~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~~~KI~SlA~~vv 137 (137)
T 3u5e_V 82 AKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV 137 (137)
T ss_dssp CSCEECTTSCEEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTTCHHHHHTCSSBC
T ss_pred ccccCcCCCeEEEcCCceEEEECCCCCEeeeEEEcchhHHHHHHhhHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999986
No 3
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=3.5e-57 Score=341.19 Aligned_cols=131 Identities=46% Similarity=0.748 Sum_probs=126.1
Q ss_pred CccccccccCcccccEEEEecCCCCceEEEEEEeccccccCCCCCcccCceEEEEEeecCCCCccceeeEEEEeeeceee
Q 032476 10 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWR 89 (140)
Q Consensus 10 ~~~~~~~~~mIq~~T~L~V~DNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~ 89 (140)
.+.++++++|||.+|+|+|+|||||++++||+|++++++.+|++.|++||+|++|||++.|+.|+|+++||||||+++++
T Consensus 2 ~~~~~~~~~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtkk~~r 81 (132)
T 1vq8_K 2 EALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIR 81 (132)
T ss_dssp CCCSSEECCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSSCEE
T ss_pred CCcccccccccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcCCCcC
Confidence 46789999999999999999999999999999999777777878899999999999999999999999999999999999
Q ss_pred ecCCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhhhhhhhcccccC
Q 032476 90 RKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140 (140)
Q Consensus 90 R~dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~~Ki~slA~~iv 140 (140)
|+||++++|||||+||+|++++|+|||||||||+|||++|+||+|||++++
T Consensus 82 R~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~~~KI~SlA~~v~ 132 (132)
T 1vq8_K 82 RPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV 132 (132)
T ss_dssp CTTSCEEEESSCEEEEECTTSCBSSSCBCSEECHHHHHHSHHHHTTCSEEC
T ss_pred cCCCcEEEeCCceEEEECCCCCEeEEEEEcCcCHHHHhcccHhhhcccccC
Confidence 999999999999999999999999999999999999999999999999875
No 4
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=2.4e-54 Score=322.03 Aligned_cols=118 Identities=34% Similarity=0.512 Sum_probs=113.5
Q ss_pred CcccccEEEEecCCCCceEEEEEEeccccccCCCCCcccCceEEEEEeecCCCC---ccceeeEEEEeeeceeeecCCcE
Q 032476 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (140)
Q Consensus 19 mIq~~T~L~V~DNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~---Kg~v~~AvIVrtkk~~~R~dG~~ 95 (140)
|||.+|+|+|+|||||++++||++++++++ ++|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~r----r~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNA----KYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSA 76 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEEESTTTC----CCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCCCCEEEEeeCCCCcEEEEEEEeCCCCC----cccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcE
Confidence 999999999999999999999999997655 58999999999999999987 68999999999999999999999
Q ss_pred EEecCceEEEECCCCCeeeeEEechhhHHHHhh-hhhhhhcccccC
Q 032476 96 MYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 140 (140)
Q Consensus 96 i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k-~~Ki~slA~~iv 140 (140)
++|||||+||+|++++|+|||||||||+|||++ |+||+|||++++
T Consensus 77 i~FddNa~Vlin~~~~p~GTrI~GpVarElr~~~~~KI~SlA~~v~ 122 (122)
T 3v2d_O 77 IRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL 122 (122)
T ss_dssp EEESSCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHSSCBC
T ss_pred EEcCCcEEEEECCCCCEeeeEEEccchHHHhhCCCchhhccccccC
Confidence 999999999999999999999999999999995 999999999985
No 5
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.5e-54 Score=321.59 Aligned_cols=118 Identities=34% Similarity=0.600 Sum_probs=113.6
Q ss_pred CcccccEEEEecCCCCceEEEEEEeccccccCCCCCcccCceEEEEEeecCCCC---ccceeeEEEEeeeceeeecCCcE
Q 032476 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (140)
Q Consensus 19 mIq~~T~L~V~DNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~---Kg~v~~AvIVrtkk~~~R~dG~~ 95 (140)
|||.+|+|+|+|||||++++||++++++.+ ++|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~----r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIGASNR----RYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMI 76 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECSSSCC----CCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCE
T ss_pred CCCccCEEEEeeCCCCcEEEEEEEcCCCCc----cccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCE
Confidence 999999999999999999999999996544 58999999999999999987 79999999999999999999999
Q ss_pred EEecCceEEEECCCCCeeeeEEechhhHHHHhhhhhhhhcccccC
Q 032476 96 MYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140 (140)
Q Consensus 96 i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~~Ki~slA~~iv 140 (140)
++|||||+||+|++++|+|||||||||+|||++|+||+|||++++
T Consensus 77 i~FddNa~Vlin~~g~p~GTrI~GPVarElr~~~~KI~SlA~~vl 121 (121)
T 3bbo_M 77 IRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPEVL 121 (121)
T ss_dssp ECCSSCEEEECCTTSSCSSSCCCSCCCGGGTTTCHHHHHHSSCCC
T ss_pred EEeCCceEEEECCCCCEeEeEEEcCcCHHHHhcchHhhhccchhC
Confidence 999999999999999999999999999999999999999999985
No 6
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=7.9e-54 Score=319.28 Aligned_cols=118 Identities=36% Similarity=0.593 Sum_probs=112.8
Q ss_pred CcccccEEEEecCCCCceEEEEEEeccccccCCCCCcccCceEEEEEeecCCCC---ccceeeEEEEeeeceeeecCCcE
Q 032476 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (140)
Q Consensus 19 mIq~~T~L~V~DNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~---Kg~v~~AvIVrtkk~~~R~dG~~ 95 (140)
|||.+|+|+|+|||||++++||++++++.+ ++|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~----r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLGGSGR----RYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSY 76 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTC----CCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCccCEEEEeECCCCcEEEEEEEcCCCcc----cccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCE
Confidence 999999999999999999999999996544 58999999999999999987 59999999999999999999999
Q ss_pred EEecCceEEEECCCCCeeeeEEechhhHHHHh-hhhhhhhcccccC
Q 032476 96 MYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 140 (140)
Q Consensus 96 i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~-k~~Ki~slA~~iv 140 (140)
++|||||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus 77 i~FddNa~Vlin~~g~p~GTrI~GPVarElr~k~~~KI~SlA~~vl 122 (122)
T 1whi_A 77 IRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI 122 (122)
T ss_dssp ECCSSCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred EEeCCceEEEECCCCCEeeeEEEccchHHHhhcCCcchhhcccccC
Confidence 99999999999999999999999999999999 6999999999985
No 7
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=1e-53 Score=318.69 Aligned_cols=117 Identities=34% Similarity=0.498 Sum_probs=112.1
Q ss_pred CcccccEEEEecCCCCceEEEEEEeccccccCCCCCcccCceEEEEEeecCCCC---ccceeeEEEEeeeceeeecCCcE
Q 032476 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (140)
Q Consensus 19 mIq~~T~L~V~DNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~---Kg~v~~AvIVrtkk~~~R~dG~~ 95 (140)
|||.+|+|+|+|||||++++||++|+++++ ++|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r----~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHR----RYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSV 76 (122)
T ss_dssp CBCTTCEEEECBTTSEEEEEEEEECSSSSC----CCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCCCCEEEEccCCCCceEEEEEEeCCCCC----CcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcE
Confidence 999999999999999999999999997655 58999999999999999987 58999999999999999999999
Q ss_pred EEecCceEEEECCC-CCeeeeEEechhhHHHHh-hhhhhhhccccc
Q 032476 96 MYFEDNAGVIVNPK-GEMKGSAITGPIGKECAD-LWPRIASAANAI 139 (140)
Q Consensus 96 i~F~~Na~VLln~~-~~p~GTRI~GpV~~elr~-k~~Ki~slA~~i 139 (140)
++|||||+||+|++ ++|+|||||||||+|||+ +|+||+|||+++
T Consensus 77 i~FddNa~Vlin~~~g~p~GTrI~GpVarElR~~~~~KI~SlA~~v 122 (122)
T 3r8s_K 77 IRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV 122 (122)
T ss_dssp EEESSCEEEEEETTTEEESCSCBCSCCCGGGGSGGGHHHHHSSSCC
T ss_pred EEcCCceEEEEeCCCCCEeeeEEEccccHHHhHcCCchhhccccCC
Confidence 99999999999999 999999999999999987 699999999975
No 8
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=62.86 E-value=11 Score=26.50 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=26.0
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeec
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRK 86 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk 86 (140)
.-.+||+|.|.++-.-.+.|-|.|.++|+..+.
T Consensus 3 ~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~ 35 (98)
T 2ftc_K 3 EFYVGSILRVTTADPYASGKISQFLGICIQRSG 35 (98)
T ss_pred ccCCCCEEEEEEEECCCceEeeeEEEEEEEEEC
Confidence 346899999999876444467999999998663
No 9
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=56.93 E-value=24 Score=25.35 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=31.7
Q ss_pred CCcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEE
Q 032476 53 PSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGV 104 (140)
Q Consensus 53 ~~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~V 104 (140)
+..++||.|.+. +.-+..|+|.|++.+.+.- ..|.|+||+.-
T Consensus 4 ~~v~vGq~V~ak------h~ngryy~~~V~~~~~~~~----y~V~F~DgS~s 45 (118)
T 2qqr_A 4 QSITAGQKVISK------HKNGRFYQCEVVRLTTETF----YEVNFDDGSFS 45 (118)
T ss_dssp SCCCTTCEEEEE------CTTSSEEEEEEEEEEEEEE----EEEEETTSCEE
T ss_pred ceeccCCEEEEE------CCCCCEEeEEEEEEeeEEE----EEEEcCCCCcc
Confidence 467899999842 1136799999999987764 57889988764
No 10
>2o5u_A Thioesterase; putative thioesterese,, hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 2av9_A 2o6t_A 2o6b_A 2o6u_A
Probab=50.48 E-value=36 Score=23.03 Aligned_cols=70 Identities=11% Similarity=-0.018 Sum_probs=37.8
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeee-cCCcEEEecCceEEEECC-CCCeeeeEEechhhHHHHhhhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRR-KDGVFMYFEDNAGVIVNP-KGEMKGSAITGPIGKECADLWPR 131 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R-~dG~~i~F~~Na~VLln~-~~~p~GTRI~GpV~~elr~k~~K 131 (140)
.+..||.|.+...-..... ..+.. .+.+.+ .||..+---+-..|.+|. .+.|. |+|.|+++.|..
T Consensus 76 ~~~~gd~v~v~t~v~~~~~-~s~~~------~~~i~~~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l~~ 142 (148)
T 2o5u_A 76 PVAFPQRIEMGLRVARLGN-SSVQY------ELALFLEGQREACAAGRFVHVFVERRSSRPV------AIPQELRDALAA 142 (148)
T ss_dssp CCCTTSCEEEEEEEEEECS-SEEEE------EEEEEESSCCBCSEEEEEEEEEEETTTCCBC------CCCHHHHHHHHT
T ss_pred cccCCCEEEEEEEEEEeCC-cEEEE------EEEEEECCCceEEEEEEEEEEEEECCCCccc------cCCHHHHHHHHH
Confidence 6789999988875322211 11111 112222 355544434445567775 35554 889999997766
Q ss_pred hhhcc
Q 032476 132 IASAA 136 (140)
Q Consensus 132 i~slA 136 (140)
...+|
T Consensus 143 ~~~~~ 147 (148)
T 2o5u_A 143 LQSSA 147 (148)
T ss_dssp TC---
T ss_pred hhccC
Confidence 65443
No 11
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=47.94 E-value=27 Score=26.13 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=27.6
Q ss_pred CCCcccCceEEEEEeecCCC-CccceeeEEEEeeec
Q 032476 52 LPSACVGDMVMATVKKGKPD-LRKKVMPAVIVRQRK 86 (140)
Q Consensus 52 ~~~a~iGD~I~vsVKk~~~~-~Kg~v~~AvIVrtkk 86 (140)
.|.-.+||+|.|.++-...+ .+-|.|.++|+.-+.
T Consensus 19 iP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~ 54 (146)
T 3v2d_T 19 LPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRR 54 (146)
T ss_dssp CCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEEC
T ss_pred CCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEEC
Confidence 46778999999999865433 366899999998764
No 12
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=47.62 E-value=17 Score=26.45 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=31.4
Q ss_pred CCcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEE
Q 032476 53 PSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGV 104 (140)
Q Consensus 53 ~~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~V 104 (140)
+..++||.|... +.-+..|+|.|++.+.+.- ..|.|+||+.-
T Consensus 5 ~~v~vGq~V~ak------~~ngryy~~~V~~~~~~~~----y~V~F~DgS~s 46 (123)
T 2xdp_A 5 KVISVGQTVITK------HRNTRYYSCRVMAVTSQTF----YEVMFDDGSFS 46 (123)
T ss_dssp CCCCTTCCCCCC------CCCCCCCCCEEEEEEEEEE----EEEEETTSCEE
T ss_pred cccccCCEEEEE------CCCCcEEeEEEEEEeeEEE----EEEEcCCCCcc
Confidence 467788888721 1137899999999987664 57899999876
No 13
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=47.56 E-value=23 Score=25.45 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=27.5
Q ss_pred CCCcccCceEEEEEeecCC-CCccceeeEEEEeeec
Q 032476 52 LPSACVGDMVMATVKKGKP-DLRKKVMPAVIVRQRK 86 (140)
Q Consensus 52 ~~~a~iGD~I~vsVKk~~~-~~Kg~v~~AvIVrtkk 86 (140)
.|.-.+||+|.|.++-... +.+-|.|.++|+.-+.
T Consensus 16 iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~ 51 (114)
T 3r8s_P 16 VPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRN 51 (114)
T ss_dssp CCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred CCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEEC
Confidence 4778899999999986543 3367899999998764
No 14
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex aeolicus} PDB: 2egi_A 2egr_A
Probab=47.44 E-value=53 Score=21.04 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=32.4
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 129 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~ 129 (140)
.+..||.|.+...-..... ..+... ..+.+ ||..+---+-..|.+ +++.|. |+|.|+++.+
T Consensus 66 ~~~~gd~v~v~~~v~~~~~-~~~~~~------~~i~~-~g~~~a~~~~~~v~~-~~~r~~------~ip~~~~~~l 126 (128)
T 2egj_A 66 PLFYDDVFEVHLNLEELSR-FTFTFS------YIVFK-EDIAVAKANTKHCMV-KNGKIV------SIPKEVLEVL 126 (128)
T ss_dssp CCCTTCEEEEEEEEEEECS-SEEEEE------EEEEE-TTEEEEEEEEEEEEE-ETTEEC------CCCHHHHHHH
T ss_pred CCcCCCEEEEEEEEEEeCC-cEEEEE------EEEEE-CCEEEEEEEEEEEEE-eCCcEe------cCCHHHHHHh
Confidence 6789999998765332221 111111 11222 565443333344555 555553 8899998754
No 15
>3r87_A Putative uncharacterized protein; unknown function; 1.05A {Photobacterium profundum}
Probab=46.57 E-value=58 Score=21.62 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=36.2
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeec-CCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRK-DGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 129 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~-dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~ 129 (140)
.+..||.|.|...-..... ..+. ..+.+.+. ||..+---+-..|.+|.++.|. |+|.|+++.+
T Consensus 69 p~~~gd~v~v~t~v~~~~~-~s~~------~~~~i~~~~~g~~~a~~~~~~v~vd~~~r~~------~iP~~~~~~l 132 (135)
T 3r87_A 69 GVEFAEICDIRTSFTLDGK-YKTL------WRQEVWRPGASRAAVIGDIEMVCLDKEKRLQ------PVPADILASM 132 (135)
T ss_dssp CCCTTCEEEEEEEEEEETT-TEEE------EEEEEECTTCSSCSEEEEEEEEEECTTCCEE------CCCHHHHHHH
T ss_pred cccCCCEEEEEEEEEEeCC-EEEE------EEEEEEECCCCEEEEEEEEEEEEECCCCCEe------cCCHHHHHHh
Confidence 6889999999875332211 1111 12223333 5654444455567788655443 8899998754
No 16
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=44.59 E-value=35 Score=20.97 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=24.6
Q ss_pred eceeeecCCcEEEecCceEEEECCCCCeee
Q 032476 85 RKPWRRKDGVFMYFEDNAGVIVNPKGEMKG 114 (140)
Q Consensus 85 kk~~~R~dG~~i~F~~Na~VLln~~~~p~G 114 (140)
-+.+.++||.+.-+...+.++.+++|.|.+
T Consensus 69 e~r~~~~dG~~~w~~~~~~~~~d~~G~~~~ 98 (115)
T 3h9w_A 69 DYRALHRDGHYVWIRDVVHVVRDDSGEVEA 98 (115)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEEEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 345668899998899999999999998864
No 17
>1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1
Probab=42.21 E-value=57 Score=21.33 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=34.6
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEEEECCC-CCeeeeEEechhhHHHHhhhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK-GEMKGSAITGPIGKECADLWPR 131 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLln~~-~~p~GTRI~GpV~~elr~k~~K 131 (140)
.+..||.|.+...-..... ..+....-+. .+ ||..+---+-..|.+|.+ +.|. |+|.|+++.+..
T Consensus 71 ~~~~gd~v~v~~~v~~~~~-~s~~~~~~i~-----~~-~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l~~ 136 (138)
T 1s5u_A 71 PARLDDMLEIQTEITSMRG-TSLVFTQRIV-----NA-ENTLLNEAEVLVVCVDPLKMKPR------ALPKSIVAEFKQ 136 (138)
T ss_dssp CCCTTCEEEEEEEEEEECS-SEEEEEEEEE-----CT-TCCEEEEEEEEEEEEETTTTEEC------CCCHHHHHHC--
T ss_pred cccCCCEEEEEEEEEEeCC-eEEEEEEEEE-----ec-CCEEEEEEEEEEEEEeCCCCCEe------cCCHHHHHHhhc
Confidence 6789999988875332221 1111111110 12 565444444455667754 4443 889999986543
No 18
>3ck1_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.74A {Ralstonia eutropha}
Probab=41.65 E-value=52 Score=22.04 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=34.8
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEEEEC-CCCCeeeeEEechhhHHHHhhhhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVN-PKGEMKGSAITGPIGKECADLWPRI 132 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLln-~~~~p~GTRI~GpV~~elr~k~~Ki 132 (140)
.+..||.|.+...-..... ..+... ..+.+.||..+---.-..|.+| +++.| -|+|.|+++.+...
T Consensus 71 ~~~~gd~v~v~~~v~~~~~-~s~~~~------~~i~~~~g~~~a~~~~~~v~vd~~~~r~------~~ip~~~~~~l~~~ 137 (150)
T 3ck1_A 71 PSRLGETLTRELRVVKLGQ-SSFTVQ------VRFMGPDSGLRLEVTQRLVCVDTDKIAP------RPLPDPVRQAMATY 137 (150)
T ss_dssp CCBTTCEEEEEEEEEEECS-SEEEEE------EEEECTTSCEEEEEEEEEECEEETTEEE------CCCCHHHHHHHHTT
T ss_pred CCcCCCEEEEEEEEEEEcC-cEEEEE------EEEEeCCCEEEEEEEEEEEEEeCCCCcc------ccCCHHHHHHHHHh
Confidence 6789999988765322221 111111 1222234654433344455666 33333 38999999865544
No 19
>2hlj_A Hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Pseudomonas putida} SCOP: d.38.1.1
Probab=38.95 E-value=73 Score=21.42 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=34.3
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeec-CCcEEEecCceEEEECC-CCCeeeeEEechhhHHHHhhhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRK-DGVFMYFEDNAGVIVNP-KGEMKGSAITGPIGKECADLWPR 131 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~-dG~~i~F~~Na~VLln~-~~~p~GTRI~GpV~~elr~k~~K 131 (140)
.+..||.|.+...-.....+ .+... ..+.+. ||..+---.-..|.+|. ++.|. |+|.|+++.|..
T Consensus 69 ~~~~gd~v~v~~~v~~~~~~-s~~~~------~~i~~~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l~~ 135 (157)
T 2hlj_A 69 EVKLGTEVWVQTQILGFDRK-RLHVY------HSLHRAGFDEVLAASEQMLLHVDLAGPQSA------PFGHTTVCRLNH 135 (157)
T ss_dssp CCBTTCEEEEEEEEEEECSS-EEEEE------EEEEETTEEEEEEEEEEEEEEBCC---CBC------CCCHHHHHHHHH
T ss_pred ccCCCCEEEEEEEEEEeCCc-EEEEE------EEEEECCCCcEEEEEEEEEEEEECCCCccC------CCCHHHHHHHHH
Confidence 67899999987653222111 11111 112222 34333333334556663 34443 789999987665
Q ss_pred hhh
Q 032476 132 IAS 134 (140)
Q Consensus 132 i~s 134 (140)
+..
T Consensus 136 ~~~ 138 (157)
T 2hlj_A 136 LVE 138 (157)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 20
>2gf6_A Conserved hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: COA; 1.91A {Sulfolobus solfataricus} SCOP: d.38.1.1
Probab=37.59 E-value=83 Score=20.41 Aligned_cols=62 Identities=19% Similarity=0.122 Sum_probs=34.5
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEEEECC-CCCeeeeEEechhhHHHHhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNP-KGEMKGSAITGPIGKECADLW 129 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLln~-~~~p~GTRI~GpV~~elr~k~ 129 (140)
.+..||.|.+...-..... ..+....-+. .||..+---+-..|.+|. ++.|. |+|.|+++.+
T Consensus 70 ~~~~gd~v~v~~~v~~~~~-~s~~~~~~i~-------~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l 132 (135)
T 2gf6_A 70 PVKLGDKLTVLLNPKILSN-KTIKFEFKVL-------KDGELTTEGYVIQIAINPKIWKST------EMPKEIMDKL 132 (135)
T ss_dssp CCCTTCEEEEEEEEEECSS-SEEEEEEEEE-------ETTEEEEEEEEEEEEEETTTTEEC------CCCHHHHHHH
T ss_pred CCcCCCEEEEEEEEEEeCC-cEEEEEEEEE-------ECCEEEEEEEEEEEEEecccCcee------cCCHHHHHHh
Confidence 6889999998876433221 1122111111 256544333444566775 34454 8899998764
No 21
>2oaf_A Thioesterase superfamily; YP_508616.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; HET: CIT PGE; 2.00A {Jannaschia SP} SCOP: d.38.1.1
Probab=37.10 E-value=86 Score=21.15 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=34.6
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEEEECCC-CCeeeeEEechhhHHHHhhhhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK-GEMKGSAITGPIGKECADLWPRI 132 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLln~~-~~p~GTRI~GpV~~elr~k~~Ki 132 (140)
.+..||.|.+...-..... ..+....- +.+ ||..+---+-..|.+|.+ +.|. |+|.|+++.+...
T Consensus 83 ~~~~gd~v~v~t~v~~~~~-~s~~~~~~------i~~-~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l~~~ 148 (151)
T 2oaf_A 83 PVTPRHILKCHTWPTRLGT-KSITFRVD------GVQ-DGVTCFVGAFTCVFTIADQFKSQ------PAPDHLRALIEPH 148 (151)
T ss_dssp CCCTTSCEEEEEEEEEECS-SEEEEEEE------EEE-TTEEEEEEEEEEEEEEGGGTEEE------CCCHHHHHHHGGG
T ss_pred CCcCCCEEEEEEEEEEeCC-cEEEEEEE------EEE-CCEEEEEEEEEEEEEcCCCCccc------CCCHHHHHHHHhh
Confidence 6889999988875332221 11111111 111 454333334445566643 3343 8999999876554
No 22
>1njk_A Hypothetical protein YBAW; structural genomics, thioesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: d.38.1.1
Probab=34.93 E-value=51 Score=22.63 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=36.3
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeee-cCCcEEEecCceEEEECC-CCCeeeeEEechhhHHHHhhhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRR-KDGVFMYFEDNAGVIVNP-KGEMKGSAITGPIGKECADLWPR 131 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R-~dG~~i~F~~Na~VLln~-~~~p~GTRI~GpV~~elr~k~~K 131 (140)
.+..||.|.+...-.....+ .+. + ...+.+ .||..+---+-..|.+|. .+.|. |+|.|+++.+..
T Consensus 85 p~~~gd~l~v~~~v~~~g~~-s~~----~--~~~i~~~~~g~~~a~~~~~~v~vd~~~~r~~------~iP~~~~~~l~~ 151 (156)
T 1njk_A 85 PAVLSDLLTITSQLQQLNGK-SGI----L--SQVITLEPEGQVVADALITFVCIDLKTQKAL------ALEGELREKLEQ 151 (156)
T ss_dssp CCCTTCEEEEEEEEEEEETT-EEE----E--EEEEEETTTTEEEEEEEEEEEEEETTTTEEE------CSSTTTTHHHHH
T ss_pred CCCCCCEEEEEEEEEEeCCe-EEE----E--EEEEEECCCCeEEEEEEEEEEEEECCCCccc------CCCHHHHHHHHH
Confidence 67899999887653221111 111 1 112222 356544444455667775 35554 899999886554
Q ss_pred h
Q 032476 132 I 132 (140)
Q Consensus 132 i 132 (140)
.
T Consensus 152 ~ 152 (156)
T 1njk_A 152 M 152 (156)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>2w3x_A CALE7; hydrolase, hotdog fold, thioesterase, enediyne biosynthesis; HET: JEF; 1.75A {Micromonospora echinospora}
Probab=34.67 E-value=99 Score=20.46 Aligned_cols=68 Identities=9% Similarity=0.018 Sum_probs=37.2
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeee--cCCcEEEecCceEEEECCC-C--CeeeeEEechhhHHHHhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRR--KDGVFMYFEDNAGVIVNPK-G--EMKGSAITGPIGKECADL 128 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R--~dG~~i~F~~Na~VLln~~-~--~p~GTRI~GpV~~elr~k 128 (140)
.+..||.|.+...-..... ..+.... .+.+ .||..+---+-..|++|.+ + .|. |+|.|+++.
T Consensus 70 ~~~~gd~v~v~t~v~~~~~-~s~~~~~------~i~~~~~~g~~~a~~~~~~v~vd~~~~~~r~~------~ip~~~~~~ 136 (147)
T 2w3x_A 70 ELAPFDRLAVRMRLVELTQ-TQMELGF------DYLRLGGDDLLVARGRQRIACMRGPNGRTEPV------RVPAGLVRA 136 (147)
T ss_dssp CCCTTCEEEEEEEEEEECS-SEEEEEE------EEEEESSSEEEEEEEEEEEEEEESSTTSCEEC------CCCHHHHHH
T ss_pred CCCCCCEEEEEEEEEEecC-cEEEEEE------EEEEcCCCCEEEEEEEEEEEEEECCCCccccc------cCCHHHHHH
Confidence 6889999998775322211 1121111 1222 2444443344455667754 2 443 889999997
Q ss_pred hhhhhh
Q 032476 129 WPRIAS 134 (140)
Q Consensus 129 ~~Ki~s 134 (140)
|.....
T Consensus 137 ~~~~~~ 142 (147)
T 2w3x_A 137 FAPFRS 142 (147)
T ss_dssp TGGGCS
T ss_pred HHHHhh
Confidence 766543
No 24
>2cye_A TTHA1846, putative thioesterase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: COA; 1.90A {Thermus thermophilus} SCOP: d.38.1.1
Probab=31.79 E-value=1.1e+02 Score=19.88 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=33.1
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhhhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRI 132 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~~Ki 132 (140)
.+..||.|.+...-.....+.-.+..- +.+ +|..+---.-..|.+| ++.| -|+|.|+++.+...
T Consensus 65 ~~~~gd~l~v~~~v~~~~~~s~~~~~~-------i~~-~g~~~a~~~~~~v~~d-~~~~------~~~p~~~~~~l~~~ 128 (133)
T 2cye_A 65 PILLGDEVFVGVRTVGLGRSSLRMEHL-------VTA-NGESAAKGLGVLVWLE-GGRP------APLPEAIRERIRAL 128 (133)
T ss_dssp CCBTTCEEEEEEEEEEECSSEEEEEEE-------EEE-TTEEEEEEEEEEEEEE-TTEE------CCCCHHHHHHHHHH
T ss_pred cccCCCEEEEEEEEEEeCCcEEEEEEE-------EEE-CCEEEEEEEEEEEEEe-CCCc------ccCCHHHHHHHHHh
Confidence 678999998876533222111111111 112 2433333333445666 4433 48999999866544
No 25
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=31.31 E-value=39 Score=20.74 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=23.6
Q ss_pred eceeeecCCcEEEecCceEEEECC-CCCeee
Q 032476 85 RKPWRRKDGVFMYFEDNAGVIVNP-KGEMKG 114 (140)
Q Consensus 85 kk~~~R~dG~~i~F~~Na~VLln~-~~~p~G 114 (140)
-...+++||.++-+..++..+.++ ++.|.+
T Consensus 73 e~r~~~~dG~~~w~~~~~~~~~d~~~g~~~~ 103 (117)
T 3f1p_A 73 QYRMLAKHGGYVWLETQGTVIYNPRNLQPQC 103 (117)
T ss_dssp CEEEECTTSSEEEEEEEEEEEEETTTTEEEE
T ss_pred EEEEEecCCCEEEEEEeeEEEECCCCCCceE
Confidence 445678999999999999988887 676644
No 26
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=30.70 E-value=85 Score=18.60 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=25.0
Q ss_pred eeeceeeecCCcEEEecCceEEEECCCCCeee
Q 032476 83 RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKG 114 (140)
Q Consensus 83 rtkk~~~R~dG~~i~F~~Na~VLln~~~~p~G 114 (140)
..-....++||...-+...+..+.++++.+.|
T Consensus 78 ~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~ 109 (118)
T 3icy_A 78 TLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSG 109 (118)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECTTSCEEE
T ss_pred eEEEEEECCCCCEEEEEEEEEEEECCCCCEEE
Confidence 33455678899988888888888998888864
No 27
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=30.57 E-value=42 Score=20.84 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=23.2
Q ss_pred eceeeecCCcEEEecCceEEEECC-CCCeee
Q 032476 85 RKPWRRKDGVFMYFEDNAGVIVNP-KGEMKG 114 (140)
Q Consensus 85 kk~~~R~dG~~i~F~~Na~VLln~-~~~p~G 114 (140)
-+..+++||.++-++.++..+.|+ ++.|.+
T Consensus 77 e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~ 107 (121)
T 3f1p_B 77 MFRFRSKNQEWLWMRTSSFTFQNPYSDEIEY 107 (121)
T ss_dssp EEEEECTTSCEEEEEEEEEEECCTTCCCCCE
T ss_pred EEEEEecCCCEEEEEEEEEEEECCCCCceeE
Confidence 445678999999999999988887 566643
No 28
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=29.56 E-value=31 Score=26.32 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=27.0
Q ss_pred CCCcccCceEEEEEeecCC-CCccceeeEEEEeeec
Q 032476 52 LPSACVGDMVMATVKKGKP-DLRKKVMPAVIVRQRK 86 (140)
Q Consensus 52 ~~~a~iGD~I~vsVKk~~~-~~Kg~v~~AvIVrtkk 86 (140)
.+.-.+||+|.|.++-..- +.|-|.|.++|+.-+.
T Consensus 24 iP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~ 59 (166)
T 2zjr_M 24 LPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAING 59 (166)
T ss_dssp CCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCC
T ss_pred CCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeC
Confidence 3678899999999985442 3467999999998653
No 29
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=27.87 E-value=88 Score=20.21 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=26.9
Q ss_pred eeceeeecCCcEEEecCceEEEECCCCCeeeeEEech
Q 032476 84 QRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120 (140)
Q Consensus 84 tkk~~~R~dG~~i~F~~Na~VLln~~~~p~GTRI~Gp 120 (140)
.-+.+.++||.+.-+...+.++.+++|.|.+ +.|.
T Consensus 84 ~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~--~~G~ 118 (142)
T 3mr0_A 84 VEYRVRTRSGDFRWIQSRGQALWNSAGEPYR--MVGW 118 (142)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEECTTSCEEE--EEEE
T ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCEEE--EEEE
Confidence 3455678999988888888899999998864 4443
No 30
>2oiw_A Putative 4-hydroxybenzoyl-COA thioesterase; structural genomics, protein structure initiative, midwest center for structu genomics; 2.00A {Geobacillus stearothermophilus} SCOP: d.38.1.1
Probab=27.75 E-value=1.3e+02 Score=19.59 Aligned_cols=66 Identities=14% Similarity=0.007 Sum_probs=35.7
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEEEECCC-CCeeeeEEechhhHHHHhhhhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK-GEMKGSAITGPIGKECADLWPRI 132 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLln~~-~~p~GTRI~GpV~~elr~k~~Ki 132 (140)
.+..||.|.+...-..... ..+....- +.+ +|..+---+-..|.+|.+ +.|. |+|.|+++.+...
T Consensus 65 ~~~~gd~v~v~~~v~~~~~-~s~~~~~~------i~~-~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l~~~ 130 (136)
T 2oiw_A 65 QMYYGQDVTVYTGIERIGN-TSLTIYEE------IHQ-NGVVCAKGRSVYVNFNFDTGRPE------PIPDDIRVKLREH 130 (136)
T ss_dssp CCCTTSCEEEEEEEEEECS-SEEEEEEE------EEE-TTEEEEEEEEEEEEEETTTTEEC------CCCHHHHHHHHTT
T ss_pred cCCCCCEEEEEEEEEecCC-cEEEEEEE------EEE-CCEEEEEEEEEEEEEECCCCccc------cCCHHHHHHHHhh
Confidence 6789999988765332221 11111111 112 454333334445667753 4454 8999999876554
Q ss_pred h
Q 032476 133 A 133 (140)
Q Consensus 133 ~ 133 (140)
.
T Consensus 131 ~ 131 (136)
T 2oiw_A 131 V 131 (136)
T ss_dssp B
T ss_pred c
Confidence 3
No 31
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=27.68 E-value=1.7e+02 Score=21.93 Aligned_cols=86 Identities=21% Similarity=0.356 Sum_probs=50.6
Q ss_pred cccccEEEEecCCCCceEEEEEEeccc--------cccCCCCCcccCceEEEEEeecCCC-CccceeeEEEEeeeceeee
Q 032476 20 LPVAATVNCADNTGAKNLYIISVKGIK--------GRLNRLPSACVGDMVMATVKKGKPD-LRKKVMPAVIVRQRKPWRR 90 (140)
Q Consensus 20 Iq~~T~L~V~DNSGak~v~cI~v~~~~--------~r~~r~~~a~iGD~I~vsVKk~~~~-~Kg~v~~AvIVrtkk~~~R 90 (140)
|..|..+.+.+.-+|..+++.+|--+. +-.+-+..+.+|....+.+-.++|. ++|..-.|.|+-.-.
T Consensus 8 irVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIV~G~~n~v~~a~lggk~v~~~~nlkp~klrGv~SeGMvLcs~~---- 83 (171)
T 1fl0_A 8 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASS---- 83 (171)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGGGGTTEEEEEECCSCCEESSSCEECCEECEEEE----
T ss_pred EEEEEEEEEEECCCCCccEEEEEEcCCCcEEEEEECCCceEcchhcCCEEEcCceEEeeEEEccEeccCEEEEEec----
Confidence 455677777777777666665554221 1123356677888777656555553 466666666544321
Q ss_pred cCCcEEEecCceEEEEC-CCCCeeeeEEe
Q 032476 91 KDGVFMYFEDNAGVIVN-PKGEMKGSAIT 118 (140)
Q Consensus 91 ~dG~~i~F~~Na~VLln-~~~~p~GTRI~ 118 (140)
++. +.|+. ++..|.|+++.
T Consensus 84 --------~~~-~~il~~~~~~~~G~~v~ 103 (171)
T 1fl0_A 84 --------PEK-IEILAPPNGSVPGDRIT 103 (171)
T ss_dssp --------TTE-EEECBCCTTCCTTCBCC
T ss_pred --------CCC-EEEEECCCCCCCCCEEE
Confidence 233 44553 45779999996
No 32
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=26.18 E-value=2e+02 Score=21.58 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=39.8
Q ss_pred CccccccccCcccccEEEEecCCCCceEE----------EEEEeccccccCCCCCcccCceEEEEEeecCCCCccceeeE
Q 032476 10 AGNKFRMSLGLPVAATVNCADNTGAKNLY----------IISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPA 79 (140)
Q Consensus 10 ~~~~~~~~~mIq~~T~L~V~DNSGak~v~----------cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~~A 79 (140)
+...-++..||+.|+.-.|-+..+--.|+ ......+..+ -+-.-.+||.++|.-- -++.-.+
T Consensus 8 ~~l~R~l~nlir~G~V~~vd~~~~rvrV~~~~~~t~wl~~~~~~ag~~~--~~~~P~vGeqV~v~f~------~Gd~~~g 79 (211)
T 3qr8_A 8 QELARALRNMIRTGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSR--TWWAPSVGEQVLILAV------GGELDTA 79 (211)
T ss_dssp TTHHHHHHHHEEEEEEEEEETTTTEEEEEETTEECCCEEECCSCBSSSB--CCCCCCTTCEEEEEEC------CTTTCCE
T ss_pred HHHHHHHHhCcEEEEEEEEECCCCEEEEEeCCccceeEEeEcccccCCc--eEeCCCCCCEEEEEeC------CCccCcc
Confidence 44556677788888887776555432232 2222211111 2335679999988853 3566678
Q ss_pred EEEee
Q 032476 80 VIVRQ 84 (140)
Q Consensus 80 vIVrt 84 (140)
+|+..
T Consensus 80 vVlg~ 84 (211)
T 3qr8_A 80 FVLPG 84 (211)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 88886
No 33
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=24.76 E-value=49 Score=23.73 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=18.6
Q ss_pred cEEEecCceEEEECCCCCeeee--EEechhh
Q 032476 94 VFMYFEDNAGVIVNPKGEMKGS--AITGPIG 122 (140)
Q Consensus 94 ~~i~F~~Na~VLln~~~~p~GT--RI~GpV~ 122 (140)
...+| ||.| .+++.+.+|+ .||||+-
T Consensus 49 ~VP~f--NapV-y~enK~~IGKVdEIFGPin 76 (114)
T 3u28_C 49 KIPYF--NAPI-YLENKTQVGKVDEILGPLN 76 (114)
T ss_dssp SEECT--TCEE-ECTTCCEEEEEEEEESBTT
T ss_pred CCCCC--CCEe-EccCCccceeEeEEeCCCC
Confidence 35565 5666 4557889997 7999985
No 34
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=24.16 E-value=76 Score=22.57 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=24.2
Q ss_pred eeecCCcEEEe--cCceEEEECCCCCeeeeEEec
Q 032476 88 WRRKDGVFMYF--EDNAGVIVNPKGEMKGSAITG 119 (140)
Q Consensus 88 ~~R~dG~~i~F--~~Na~VLln~~~~p~GTRI~G 119 (140)
+++..++++.| ..|-+|+++.+++-++==.+-
T Consensus 59 YR~~~dskVy~N~~T~~~Viid~~g~FvsGwKl~ 92 (107)
T 1v74_A 59 YRREKGSKVYFNPNTMNVVIIKSNGEFLSGWKIN 92 (107)
T ss_dssp CTTSTTCEEEECTTTCEEEEECTTSCEEEEEECC
T ss_pred eecCCCcEEEEeCCCCeEEEEcCCCCEEEEEEcC
Confidence 44556899999 789999999999876544433
No 35
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=23.85 E-value=83 Score=22.17 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=19.9
Q ss_pred cccccEEEEecCCCCceEEEEEEe
Q 032476 20 LPVAATVNCADNTGAKNLYIISVK 43 (140)
Q Consensus 20 Iq~~T~L~V~DNSGak~v~cI~v~ 43 (140)
|..|+.+.+-+.-+|..+.+.+|-
T Consensus 14 irVG~I~~~e~hp~AdKL~~~~VD 37 (118)
T 3ers_X 14 MRVGKIVEVKRHENADKLYIVQVD 37 (118)
T ss_dssp EEEEEEEEEECCTTCSSCEEEEEE
T ss_pred EEEEEEEEEEEcCCCCCcEEEEEE
Confidence 567899999999999888877764
No 36
>1lo7_A 4-hydroxybenzoyl-COA thioesterase; hot DOG fold, catalytic mechanism, hydrolase; HET: 4CO; 1.50A {Pseudomonas SP} SCOP: d.38.1.1 PDB: 1bvq_A* 1lo8_A* 1lo9_A*
Probab=23.81 E-value=1.4e+02 Score=19.42 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=32.4
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeec---CC-cEEEecCceEEEECCCCCeeeeEEechhhHHHHhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRK---DG-VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 129 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~---dG-~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~ 129 (140)
.+..||.|.+...-..... ..+... +.+.+. +| ..+---.-..|.+|.+ ..|+=--|+|.++++.+
T Consensus 71 p~~~gd~v~v~~~v~~~~~-~s~~~~------~~i~~~~~~~g~~~~a~~~~~~v~vd~~---~~~~r~~~ip~~~~~~l 140 (141)
T 1lo7_A 71 TASYDDVLTIETCIKEWRR-KSFVQR------HSVSRTTPGGDVQLVMRADEIRVFAMND---GERLRAIEVPADYIELC 140 (141)
T ss_dssp CCCTTCEEEEEEEEEEECS-SEEEEE------EEEEEECTTSCEEEEEEEEEEEEEEEEE---TTEEEEECCCHHHHHHH
T ss_pred CCCCCCEEEEEEEEEEEcc-eEEEEE------EEEEECCCCCCcEEEEEEEEEEEEEecC---CCCccEecCCHHHHHhh
Confidence 6889999998775332221 111111 112222 45 4333334445566610 11222348899988753
No 37
>2ali_A Hypothetical protein PA2801; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 3qy3_A
Probab=23.05 E-value=1.5e+02 Score=20.46 Aligned_cols=64 Identities=9% Similarity=-0.009 Sum_probs=34.3
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeec-C-CcEEEecCceEEEECC-CCCeeeeEEechhhHHHHhhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRK-D-GVFMYFEDNAGVIVNP-KGEMKGSAITGPIGKECADLWP 130 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~-d-G~~i~F~~Na~VLln~-~~~p~GTRI~GpV~~elr~k~~ 130 (140)
.+..||.|.+...-..... ..+... +.+.+. | |..+---+-..|.+|. ++.|. |+|.|+++.+.
T Consensus 90 p~~~gd~v~v~t~v~~~~~-~s~~~~------~~i~~~~~~g~~~a~a~~~~v~vd~~~~rp~------~iP~~~~~~l~ 156 (158)
T 2ali_A 90 PVVHPATVVVELYAGRLGT-SSLVLE------HRLHTLEDPQGTYGEGHCKLVWVRHAENRST------PVPDSIRAAIA 156 (158)
T ss_dssp CCCSSCEEEEEEEEEEECS-SEEEEE------EEEEESSCTTSCCEEEEEEEEEEEGGGTEEC------CCCHHHHHHHC
T ss_pred cccCCCEEEEEEEEEEecC-cEEEEE------EEEEECCCCCEEEEEEEEEEEEEECCCCccc------CCCHHHHHHhh
Confidence 6889999988775322211 111111 122222 4 5443333444566774 35554 89999998653
No 38
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.63 E-value=12 Score=30.04 Aligned_cols=35 Identities=17% Similarity=0.373 Sum_probs=28.2
Q ss_pred CCCcccCceEEEEEeecCCCCccceeeEEEEeeec
Q 032476 52 LPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRK 86 (140)
Q Consensus 52 ~~~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk 86 (140)
.+.-.+||+|.|.++-...+.|-|.|.|+|+..+.
T Consensus 140 iPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~ 174 (233)
T 3bbo_R 140 VPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQN 174 (233)
T ss_dssp CSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCB
T ss_pred CCccCCCCEEEEEEEeccCcceecceEEEEEEEeC
Confidence 46788999999999766645578999999997653
No 39
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.25 E-value=41 Score=23.28 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=17.7
Q ss_pred ecCceEEEECCCCCeeee--EEechhhH
Q 032476 98 FEDNAGVIVNPKGEMKGS--AITGPIGK 123 (140)
Q Consensus 98 F~~Na~VLln~~~~p~GT--RI~GpV~~ 123 (140)
.+.|+.|. +++.+++|. .|||||..
T Consensus 50 l~~~s~l~-~edk~~IGkV~EiFGpV~~ 76 (103)
T 2eqn_A 50 VNEETVIF-KSDRQAAGKIFEIFGPVAH 76 (103)
T ss_dssp CCTTCEEE-CTTSBEEEEEEEEESCSSS
T ss_pred CcCCCEEE-ecCCcEEEEEEEEECCCCC
Confidence 44566554 557899997 69999853
No 40
>3hm0_A Probable thioesterase; niaid, ssgcid, decode, UW, SBRI, infectious disease, rhizobiales, bacteremia, endocarditis, bacillary angiomatosis; 2.50A {Bartonella henselae}
Probab=21.75 E-value=1.9e+02 Score=20.41 Aligned_cols=62 Identities=8% Similarity=0.089 Sum_probs=30.0
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 129 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~ 129 (140)
.+..||.|.|...-..... ..+... +.+.+ ||..+---+-..|.+|.++.|. |+|.|+++.+
T Consensus 104 p~~~gd~i~V~t~v~~~~~-~s~~~~------~~i~~-~g~~~a~a~~~~V~vD~~~rp~------~iP~~~r~~l 165 (167)
T 3hm0_A 104 PAQIDNLLTIKTRISRLQG-ARFFME------QYILH-GESMLVTAKVEIALINEEGKPR------RLPKELFSTI 165 (167)
T ss_dssp CCCTTCEEEEEEEEEEECS-SEEEEE------EEEEE-TTEEEEEEEEEEEEEETTSCBC------CCCC------
T ss_pred CCCCCCEEEEEEEEEEeCC-eEEEEE------EEEEE-CCEEEEEEEEEEEEECCCCCEe------cCCHHHHHHh
Confidence 6889999998875332221 111111 11222 4554444445567777655443 7888888643
No 41
>1z54_A Probable thioesterase; hypothetical protein, structural genom NPPSFA, riken structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: d.38.1.1
Probab=21.38 E-value=1.7e+02 Score=18.73 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=31.5
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhhhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRI 132 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~~Ki 132 (140)
.+..||.|.+...-..... ..+.... .+.+ +|..+---+-..|.+ .++.|. |+|.|+++.+..+
T Consensus 66 ~~~~gd~v~v~~~v~~~~~-~~~~~~~------~i~~-~~~~~a~~~~~~v~v-~~~r~~------~ip~~~~~~~~~~ 129 (132)
T 1z54_A 66 PARFGEVVEVRTRLAELSS-RALLFRY------RVER-EGVLLAEGFTRHLCQ-VGERAA------RIPEDIYRALSVL 129 (132)
T ss_dssp CCCTTCEEEEEEEEEEECS-SEEEEEE------EEEE-TTEEEEEEEEEEECE-ESSSBC------CCCHHHHHHHHHH
T ss_pred cCCCCCEEEEEEEEEEeCC-eEEEEEE------EEEE-CCEEEEEEEEEEEEE-ECCcEe------cCCHHHHHHHHHh
Confidence 6789999998875332221 1111111 1112 343222222223333 335554 7899999876544
No 42
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=21.38 E-value=1.4e+02 Score=17.62 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=23.2
Q ss_pred eceeeecCCcEEEecCceEEEECCCCCeee
Q 032476 85 RKPWRRKDGVFMYFEDNAGVIVNPKGEMKG 114 (140)
Q Consensus 85 kk~~~R~dG~~i~F~~Na~VLln~~~~p~G 114 (140)
-....++||...-+.-.+..+.++++.|.|
T Consensus 83 e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 112 (125)
T 3nja_A 83 EYRIVRPDGQVRELLERNHIQRQASGQVDH 112 (125)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEEECCCCCEEEEEEeeEEEECCCCCEEE
Confidence 344567899888888888888888888765
No 43
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=20.74 E-value=1.1e+02 Score=18.87 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=20.8
Q ss_pred eeecCCcEEEecCceEEEECCCCCeee
Q 032476 88 WRRKDGVFMYFEDNAGVIVNPKGEMKG 114 (140)
Q Consensus 88 ~~R~dG~~i~F~~Na~VLln~~~~p~G 114 (140)
..|+||..+-..-+..-+.++++++.+
T Consensus 73 ~~~kdG~~~~~~~~~~pi~d~~G~~~~ 99 (109)
T 1n9l_A 73 NYRKDGTPFWNLLTVTPIKTPDGRVSK 99 (109)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 358899987777777778888888764
No 44
>4i4j_A ACP-polyene thioesterase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: TAR; 2.78A {Streptomyces globisporus}
Probab=20.68 E-value=2.1e+02 Score=19.56 Aligned_cols=73 Identities=4% Similarity=-0.097 Sum_probs=36.8
Q ss_pred CcccCceEEEEEeecCCCCccceeeEEEEeeeceeeecCCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhhhhh
Q 032476 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRI 132 (140)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~R~dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~~Ki 132 (140)
.+..||.|.|...-..... ..+....-+..... -.+|..+---+-..|.+|.+. +++---|+|.|+++.+...
T Consensus 75 p~~~gd~v~v~t~v~~~~~-~s~~~~~~i~~~~~--~~~g~~~a~~~~~~v~vd~~~---~~~r~~~iP~~~~~~l~~~ 147 (159)
T 4i4j_A 75 EITAFDELSIRMRLSELRQ-TQLEFTFDYIKLGD--DGGETLVARGRQRIACMRGPN---TATVPTLIPEALAEALAPY 147 (159)
T ss_dssp CCCTTCEEEEEEEEEEECS-SEEEEEEEEEEECS--SSCEEEEEEEEEEEEEEESCS---SSCEECCCCHHHHHHTSTT
T ss_pred CCCCCCEEEEEEEEEEecC-cEEEEEEEEEECCC--CCCCeEEEEEEEEEEEEECCC---CCCcEecCCHHHHHHHHHH
Confidence 6889999998875432221 11111111111100 123444333344567787652 1122348999999865544
Done!