RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032476
         (140 letters)



>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 132

 Score =  153 bits (388), Expect = 8e-50
 Identities = 60/130 (46%), Positives = 84/130 (64%)

Query: 11  GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP 70
                ++ GL   + + CADNTGA+ L +ISV G  G  NRLP A +GD +  +V KG P
Sbjct: 3   ALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP 62

Query: 71  DLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWP 130
           ++R++V+ AV+VRQRKP RR DG  + FEDNA VIV+   + +G+ + GPI +E A  + 
Sbjct: 63  EMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFG 122

Query: 131 RIASAANAIV 140
            +ASAA  IV
Sbjct: 123 SVASAATMIV 132


>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
           thermophilus [TaxId: 274]}
          Length = 122

 Score =  120 bits (303), Expect = 5e-37
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 8/119 (6%)

Query: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIV 82
           +  ADNTGA+ +  I V            A VGD+++A+VK+  P        V+ AV+V
Sbjct: 8   LEVADNTGARKIMCIRVLKGSNA----KYATVGDVIVASVKEAIPRGAVKEGDVVKAVVV 63

Query: 83  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 140
           R +K  +R DG  + F+DNA VI+N + E +G+ + GP+ +E  +  + +I S A  ++
Sbjct: 64  RTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL 122


>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 122

 Score =  112 bits (283), Expect = 6e-34
 Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 8/119 (6%)

Query: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIV 82
           +  ADN+GA+ + +I V G     +    A +GD+V+ATVK   P     + +V+ AV+V
Sbjct: 8   LKVADNSGAREVLVIKVLGG----SGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVV 63

Query: 83  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 140
           R ++  RR DG ++ F++NA VI+      +G+ I GP+ +E  D  + +I S A  ++
Sbjct: 64  RTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI 122


>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli
           [TaxId: 562]}
          Length = 121

 Score =  111 bits (279), Expect = 3e-33
 Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 9/119 (7%)

Query: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIV 82
           +N ADN+GA+ +  I V G     +    A VGD++  T+K+  P     +  V+ AV+V
Sbjct: 7   LNVADNSGARRVMCIKVLGG----SHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVV 62

Query: 83  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEM-KGSAITGPIGKEC-ADLWPRIASAANAI 139
           R +K  RR DG  + F+ NA V++N   E   G+ I GP+ +E  ++ + +I S A  +
Sbjct: 63  RTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV 121


>d1ig0a2 c.100.1.1 (A:3-223) Thiamin pyrophosphokinase, catalytic
          domain {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 221

 Score = 28.9 bits (64), Expect = 0.19
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 28 CADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
          CAD   A  LY         R+  LP+  +GD+
Sbjct: 65 CADG-AANRLYDYLDDDETLRIKYLPNYIIGDL 96


>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
           {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
          Length = 690

 Score = 26.4 bits (58), Expect = 1.4
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 36  NLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVF 95
           +LY     GIK   + + +     ++    +     + K   P V+   +  W   D  F
Sbjct: 142 DLY---EGGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMT-DEEF 197

Query: 96  MYFEDNAGVIVNP 108
              E  AG  VNP
Sbjct: 198 AR-EMIAG--VNP 207


>d2psba1 c.153.1.1 (A:13-308) Uncharacterized protein YerB {Bacillus
           subtilis [TaxId: 1423]}
          Length = 296

 Score = 23.8 bits (51), Expect = 9.6
 Identities = 4/21 (19%), Positives = 10/21 (47%)

Query: 88  WRRKDGVFMYFEDNAGVIVNP 108
           W++ +G  +  +D   +   P
Sbjct: 258 WKQVNGRIVPVKDGKWLPFVP 278


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 513,737
Number of extensions: 22647
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 7
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.6 bits)