Query 032477
Match_columns 140
No_of_seqs 115 out of 1037
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 14:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 2E-24 4.4E-29 150.0 10.9 91 21-111 10-100 (100)
2 KOG0014 MADS box transcription 97.1 0.00011 2.4E-09 55.5 0.2 72 28-99 112-188 (195)
3 PF06005 DUF904: Protein of un 96.4 0.015 3.2E-07 38.2 5.8 49 57-110 1-49 (72)
4 PRK15422 septal ring assembly 93.6 0.61 1.3E-05 31.1 7.1 43 57-104 1-43 (79)
5 COG3074 Uncharacterized protei 92.7 1.3 2.8E-05 29.0 7.4 46 57-107 1-46 (79)
6 PF06156 DUF972: Protein of un 88.0 7.2 0.00016 27.3 8.7 49 59-112 7-55 (107)
7 PRK13169 DNA replication intia 86.9 6.3 0.00014 27.8 7.7 49 59-112 7-55 (110)
8 PF06698 DUF1192: Protein of u 83.4 2.4 5.2E-05 26.7 3.8 29 48-76 12-40 (59)
9 PF01166 TSC22: TSC-22/dip/bun 79.4 5.3 0.00011 25.2 4.2 30 82-111 17-46 (59)
10 cd07429 Cby_like Chibby, a nuc 78.8 4.1 8.9E-05 28.7 4.1 25 87-111 73-97 (108)
11 COG4467 Regulator of replicati 77.0 20 0.00043 25.4 7.0 48 59-111 7-54 (114)
12 KOG1962 B-cell receptor-associ 74.1 42 0.0009 26.5 9.7 78 34-111 131-211 (216)
13 PF07106 TBPIP: Tat binding pr 72.1 24 0.00052 26.1 7.0 23 57-79 142-164 (169)
14 smart00338 BRLZ basic region l 71.7 21 0.00046 22.1 5.9 36 72-111 16-51 (65)
15 PF09789 DUF2353: Uncharacteri 71.4 56 0.0012 27.3 9.6 77 32-113 32-113 (319)
16 PF10504 DUF2452: Protein of u 69.3 32 0.00069 25.9 7.0 44 58-101 28-74 (159)
17 PF00170 bZIP_1: bZIP transcri 68.6 25 0.00054 21.7 6.0 36 72-111 16-51 (64)
18 PF06156 DUF972: Protein of un 66.5 34 0.00073 23.9 6.4 43 69-112 6-48 (107)
19 KOG4797 Transcriptional regula 66.1 39 0.00084 24.0 6.5 44 64-107 45-95 (123)
20 COG2433 Uncharacterized conser 63.9 94 0.002 28.4 9.9 52 60-111 450-506 (652)
21 KOG0930 Guanine nucleotide exc 61.2 33 0.00071 28.6 6.2 44 53-105 7-50 (395)
22 PF08781 DP: Transcription fac 61.1 47 0.001 24.5 6.5 66 60-136 1-67 (142)
23 TIGR02449 conserved hypothetic 61.1 41 0.00089 21.5 6.7 46 61-111 1-46 (65)
24 TIGR02338 gimC_beta prefoldin, 61.0 52 0.0011 22.6 6.5 46 65-111 61-106 (110)
25 KOG4797 Transcriptional regula 59.9 20 0.00044 25.4 4.2 32 79-110 57-91 (123)
26 PF13758 Prefoldin_3: Prefoldi 59.3 25 0.00053 24.5 4.5 38 26-63 8-56 (99)
27 PRK13169 DNA replication intia 59.1 55 0.0012 23.1 6.3 41 70-111 7-47 (110)
28 PF07716 bZIP_2: Basic region 57.9 39 0.00084 20.2 6.0 36 72-111 15-50 (54)
29 PF08317 Spc7: Spc7 kinetochor 55.7 1.2E+02 0.0025 25.0 11.8 62 52-113 201-264 (325)
30 PRK10884 SH3 domain-containing 53.3 1.1E+02 0.0023 23.9 10.1 75 31-110 94-170 (206)
31 PF11365 DUF3166: Protein of u 53.2 54 0.0012 22.6 5.4 29 83-111 12-40 (96)
32 PF14645 Chibby: Chibby family 52.0 28 0.00061 24.7 3.9 25 86-110 71-95 (116)
33 smart00787 Spc7 Spc7 kinetocho 50.4 1.4E+02 0.0031 24.6 9.8 62 52-113 196-259 (312)
34 PRK10884 SH3 domain-containing 48.3 1.3E+02 0.0028 23.4 8.0 11 34-44 90-100 (206)
35 PF10226 DUF2216: Uncharacteri 47.8 1.2E+02 0.0026 23.6 7.0 34 78-111 47-80 (195)
36 cd00632 Prefoldin_beta Prefold 46.0 93 0.002 21.1 7.4 46 65-111 57-102 (105)
37 PHA03155 hypothetical protein; 45.4 1.1E+02 0.0024 21.8 8.2 54 23-76 8-61 (115)
38 KOG4643 Uncharacterized coiled 44.5 1.4E+02 0.003 29.1 8.1 55 58-112 234-290 (1195)
39 PF06005 DUF904: Protein of un 43.4 90 0.002 20.2 5.6 32 79-110 11-42 (72)
40 PRK00888 ftsB cell division pr 42.9 86 0.0019 21.6 5.2 18 89-106 37-54 (105)
41 PF10224 DUF2205: Predicted co 42.9 88 0.0019 20.8 5.0 30 84-113 35-64 (80)
42 PF03980 Nnf1: Nnf1 ; InterPr 42.1 1.1E+02 0.0023 20.8 5.6 36 77-112 71-106 (109)
43 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.0 1.3E+02 0.0028 21.3 10.1 29 83-111 102-130 (132)
44 PRK09343 prefoldin subunit bet 40.9 1.3E+02 0.0027 21.2 6.6 42 69-111 69-110 (121)
45 PF04977 DivIC: Septum formati 40.4 79 0.0017 19.7 4.5 29 84-112 22-50 (80)
46 PRK11637 AmiB activator; Provi 40.3 2.3E+02 0.005 24.0 10.7 75 28-111 52-128 (428)
47 PF10211 Ax_dynein_light: Axon 40.0 1.7E+02 0.0036 22.3 8.2 9 3-11 95-103 (189)
48 PF15243 ANAPC15: Anaphase-pro 39.7 40 0.00087 23.1 3.0 21 60-80 28-48 (92)
49 PF05529 Bap31: B-cell recepto 38.7 1.7E+02 0.0036 21.9 7.8 52 60-111 125-186 (192)
50 KOG0804 Cytoplasmic Zn-finger 38.3 2.8E+02 0.0061 24.5 8.9 36 72-107 375-410 (493)
51 TIGR02894 DNA_bind_RsfA transc 37.8 1.8E+02 0.0038 22.0 11.1 57 54-110 77-135 (161)
52 PF09755 DUF2046: Uncharacteri 37.3 2.4E+02 0.0053 23.5 8.4 57 68-126 153-216 (310)
53 smart00340 HALZ homeobox assoc 37.3 79 0.0017 18.6 3.6 24 89-112 8-31 (44)
54 PF15058 Speriolin_N: Sperioli 35.8 87 0.0019 24.4 4.6 32 80-112 13-44 (200)
55 KOG4005 Transcription factor X 35.3 2.4E+02 0.0053 22.9 7.9 56 52-108 59-119 (292)
56 PF04880 NUDE_C: NUDE protein, 35.3 91 0.002 23.6 4.6 43 62-109 2-47 (166)
57 PF09744 Jnk-SapK_ap_N: JNK_SA 35.0 1.9E+02 0.0041 21.5 9.4 28 84-111 87-114 (158)
58 PF04849 HAP1_N: HAP1 N-termin 34.9 60 0.0013 27.0 3.9 53 60-112 97-186 (306)
59 PHA03155 hypothetical protein; 34.8 88 0.0019 22.3 4.2 26 88-113 10-35 (115)
60 PF01093 Clusterin: Clusterin; 34.3 1.7E+02 0.0037 25.6 6.7 26 53-78 2-27 (436)
61 PRK13729 conjugal transfer pil 34.0 1.9E+02 0.0041 25.6 6.9 43 63-110 79-121 (475)
62 PF02151 UVR: UvrB/uvrC motif; 33.5 87 0.0019 17.2 4.2 33 61-93 3-35 (36)
63 PF06937 EURL: EURL protein; 33.3 70 0.0015 26.2 4.0 44 41-84 203-246 (285)
64 PF15397 DUF4618: Domain of un 31.8 2.8E+02 0.0061 22.5 8.0 34 78-111 185-218 (258)
65 PF09798 LCD1: DNA damage chec 30.2 2.6E+02 0.0056 25.8 7.4 50 61-110 5-57 (654)
66 KOG0709 CREB/ATF family transc 30.1 51 0.0011 28.9 2.9 56 56-111 233-311 (472)
67 PF14775 NYD-SP28_assoc: Sperm 28.8 1.4E+02 0.0031 18.5 4.1 22 28-49 38-59 (60)
68 PF11629 Mst1_SARAH: C termina 28.7 1.1E+02 0.0024 18.5 3.3 11 54-64 5-15 (49)
69 TIGR00012 L29 ribosomal protei 28.4 1.2E+02 0.0025 18.4 3.6 28 53-80 1-28 (55)
70 PF12252 SidE: Dot/Icm substra 28.2 3.9E+02 0.0085 26.5 8.3 66 27-93 1128-1193(1439)
71 PRK09413 IS2 repressor TnpA; R 26.7 2.2E+02 0.0048 19.7 7.0 29 83-111 75-103 (121)
72 KOG3684 Ca2+-activated K+ chan 26.2 4.2E+02 0.0091 23.5 7.7 61 41-105 407-467 (489)
73 PF12537 DUF3735: Protein of u 26.1 1.4E+02 0.0029 19.1 3.7 25 59-83 47-71 (72)
74 PF07106 TBPIP: Tat binding pr 25.8 2.7E+02 0.0058 20.3 7.0 61 52-112 64-135 (169)
75 COG4467 Regulator of replicati 25.7 1.3E+02 0.0029 21.3 3.8 28 84-111 20-47 (114)
76 TIGR02209 ftsL_broad cell divi 25.4 1.9E+02 0.0041 18.4 5.1 29 83-111 28-56 (85)
77 cd08888 SRPBCC_PITPNA-B_like L 25.2 92 0.002 25.3 3.4 41 37-77 215-257 (258)
78 PF07558 Shugoshin_N: Shugoshi 25.1 99 0.0021 18.2 2.7 32 79-110 14-45 (46)
79 PF04508 Pox_A_type_inc: Viral 24.5 1.1E+02 0.0024 15.6 2.4 15 31-45 2-16 (23)
80 KOG0995 Centromere-associated 24.4 5.4E+02 0.012 23.4 11.5 109 4-113 201-328 (581)
81 PF07498 Rho_N: Rho terminatio 24.2 9.3 0.0002 22.1 -1.9 33 53-86 1-33 (43)
82 KOG3119 Basic region leucine z 24.1 2.2E+02 0.0048 22.9 5.4 23 89-111 218-240 (269)
83 smart00030 CLb CLUSTERIN Beta 22.6 3.8E+02 0.0083 21.0 6.7 28 53-80 8-35 (206)
84 COG5415 Predicted integral mem 22.3 1.7E+02 0.0036 23.4 4.2 26 60-85 15-43 (251)
85 COG3883 Uncharacterized protei 22.2 4.4E+02 0.0094 21.5 8.7 52 60-111 52-109 (265)
86 PF11460 DUF3007: Protein of u 22.1 52 0.0011 23.1 1.2 19 52-70 85-103 (104)
87 PRK14127 cell division protein 22.1 2.9E+02 0.0062 19.4 7.8 47 84-130 42-91 (109)
88 PF12065 DUF3545: Protein of u 22.0 64 0.0014 20.3 1.5 37 55-96 2-38 (59)
89 PF03250 Tropomodulin: Tropomo 21.7 59 0.0013 24.2 1.5 17 54-70 21-37 (147)
90 PF12548 DUF3740: Sulfatase pr 21.6 1.8E+02 0.0038 21.5 4.0 37 71-108 99-135 (145)
91 PF04999 FtsL: Cell division p 21.3 2.5E+02 0.0055 18.4 5.1 31 81-111 37-67 (97)
92 PF04899 MbeD_MobD: MbeD/MobD 21.1 2.4E+02 0.0053 18.1 7.6 48 64-111 3-53 (70)
93 PRK00306 50S ribosomal protein 20.9 1.5E+02 0.0032 18.6 3.1 29 52-80 4-32 (66)
94 PF07407 Seadorna_VP6: Seadorn 20.5 3.2E+02 0.0069 23.3 5.7 36 51-98 23-58 (420)
95 PHA03162 hypothetical protein; 20.2 3.6E+02 0.0078 19.7 7.9 64 25-91 15-82 (135)
96 KOG3584 cAMP response element 20.2 2.5E+02 0.0054 23.4 4.9 43 64-111 295-337 (348)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.92 E-value=2e-24 Score=150.04 Aligned_cols=91 Identities=36% Similarity=0.469 Sum_probs=86.8
Q ss_pred ChhHHhhhHHHHHHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 21 PSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTE 100 (140)
Q Consensus 21 ~~~~~~~~~~e~~~L~~e~e~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~e 100 (140)
...+.+.|..++++|+.+++.|+..+|+|+|+||++||++||++||++|+.||.+||++|+++|+++|+.|++|++.+.+
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~ 89 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE 89 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 032477 101 ENLRLKQHGLI 111 (140)
Q Consensus 101 eN~~L~~k~~~ 111 (140)
+|..|+.++.+
T Consensus 90 en~~L~~~~~e 100 (100)
T PF01486_consen 90 ENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=97.14 E-value=0.00011 Score=55.55 Aligned_cols=72 Identities=32% Similarity=0.366 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHH---HhccCcccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 032477 28 ESSTYAILSKEMADRTR---ELRQMKGEELQELNM-EELMRLEKSLEGGLSRVVQTKGERLLNEID-ALRRKEAQLT 99 (140)
Q Consensus 28 ~~~e~~~L~~e~e~L~~---~~R~l~GEdL~~Lsl-~EL~~LE~qLe~aL~~IR~rK~qll~e~I~-~Lk~Ke~~L~ 99 (140)
+......++...+.+.. .+++++|+++.++++ .+|..+|.+++.++..+|..+...+..++. .++.+...+.
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
T KOG0014|consen 112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLE 188 (195)
T ss_pred hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhcc
Confidence 34455667777777764 499999999999999 999999999999999999999998888776 4555444443
No 3
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.36 E-value=0.015 Score=38.21 Aligned_cols=49 Identities=29% Similarity=0.425 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
+|++-|.+||..+..|+..| .+|..+++.|+.+...+.++|..|.....
T Consensus 1 M~~E~l~~LE~ki~~aveti-----~~Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETI-----ALLQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 57899999999999999999 45666778888886666666666655544
No 4
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.62 E-value=0.61 Score=31.08 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR 104 (140)
Q Consensus 57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~ 104 (140)
+|++=|.+||..+..|+..| .++.-+|++|+.|...|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999998 67777889998887666665444
No 5
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.70 E-value=1.3 Score=29.02 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (140)
Q Consensus 57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~ 107 (140)
+|++=|.+||..+..|+..| .++.-+|++|+.|...|..+-..+..
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~ 46 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 57888999999999999998 67777889998887766655554433
No 6
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.02 E-value=7.2 Score=27.31 Aligned_cols=49 Identities=24% Similarity=0.265 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 59 l~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
++.+..||+++..-+..|..-|.+ +..|-.....|.-||..|+..+.+.
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999998888887665554 3566666777888888888888764
No 7
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.92 E-value=6.3 Score=27.84 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 59 l~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
++-+.+||+++..-+..+..-|.+ +..+-.....|.-||..|+..+.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999888888665554 4566667777888888888888863
No 8
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=83.44 E-value=2.4 Score=26.73 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=20.3
Q ss_pred cCcccCCCCCCHHHHHHHHHHHHHHHHHH
Q 032477 48 QMKGEELQELNMEELMRLEKSLEGGLSRV 76 (140)
Q Consensus 48 ~l~GEdL~~Lsl~EL~~LE~qLe~aL~~I 76 (140)
+..|+||+.||++||..==..|+.=+.++
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~ 40 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARL 40 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999976434444333333
No 9
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=79.37 E-value=5.3 Score=25.16 Aligned_cols=30 Identities=40% Similarity=0.430 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 82 ERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 82 qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+.+.++|..|..+...|..||..|+..+.-
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNASP 46 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 466788888888888899999888876543
No 10
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=78.84 E-value=4.1 Score=28.74 Aligned_cols=25 Identities=40% Similarity=0.399 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 87 EIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 87 ~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
++..++++.+.|+|||+.|+-|+.-
T Consensus 73 e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888888777653
No 11
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=76.98 E-value=20 Score=25.38 Aligned_cols=48 Identities=21% Similarity=0.166 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 59 l~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
++.+.+||++|-.-+..|-.-|.++ ..+=.....|.-||..|+.++++
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 5678899999988888877666554 55556667788888888999887
No 12
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=74.07 E-value=42 Score=26.51 Aligned_cols=78 Identities=23% Similarity=0.222 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhccCcc-cCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 34 ILSKEMADRTRELRQMKG-EELQELNMEELMRLEKSLEGGLSRVV--QTKGERLLNEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 34 ~L~~e~e~L~~~~R~l~G-EdL~~Lsl~EL~~LE~qLe~aL~~IR--~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
..+++++.++.....-.+ +.=.+....|+..|+..++.--...- ..+..-|..+.+.+.+.-..|.++|..|+.++.
T Consensus 131 ~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 131 KAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 344566666655544333 22223456678888877776443332 334445667888888888889999999998886
Q ss_pred h
Q 032477 111 I 111 (140)
Q Consensus 111 ~ 111 (140)
.
T Consensus 211 ~ 211 (216)
T KOG1962|consen 211 S 211 (216)
T ss_pred c
Confidence 5
No 13
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.07 E-value=24 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 032477 57 LNMEELMRLEKSLEGGLSRVVQT 79 (140)
Q Consensus 57 Lsl~EL~~LE~qLe~aL~~IR~r 79 (140)
.|.+|...++.....+....+.|
T Consensus 142 vs~ee~~~~~~~~~~~~k~w~kR 164 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKEWKKR 164 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333333
No 14
>smart00338 BRLZ basic region leucin zipper.
Probab=71.70 E-value=21 Score=22.10 Aligned_cols=36 Identities=36% Similarity=0.346 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
|..+-|.+|... +..|..++..|..+|..|..++..
T Consensus 16 aA~~~R~rKk~~----~~~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 16 AARRSRERKKAE----IEELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445557777654 477788888888888888877765
No 15
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.42 E-value=56 Score=27.30 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhccCc--ccCCC--CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 32 YAILSKEMADRTRELRQMK--GEELQ--ELNM-EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLK 106 (140)
Q Consensus 32 ~~~L~~e~e~L~~~~R~l~--GEdL~--~Lsl-~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~ 106 (140)
++.|+.....+++..+-+. +...+ ++++ .+= ..|..-|...|.+-. -+..+++.|+++...++..++.|+
T Consensus 32 AEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~----~~La~lL~~sre~Nk-~L~~Ev~~Lrqkl~E~qGD~KlLR 106 (319)
T PF09789_consen 32 AEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKEN----KNLAQLLSESREQNK-KLKEEVEELRQKLNEAQGDIKLLR 106 (319)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccch----hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchHHHHH
Confidence 3445555556666555444 22222 2222 222 334444555555443 457899999999999999999999
Q ss_pred HHHhhhh
Q 032477 107 QHGLIQM 113 (140)
Q Consensus 107 ~k~~~~~ 113 (140)
.++....
T Consensus 107 ~~la~~r 113 (319)
T PF09789_consen 107 EKLARQR 113 (319)
T ss_pred HHHHhhh
Confidence 9998865
No 16
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=69.32 E-value=32 Score=25.91 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 032477 58 NMEELMRLEKSLEGGLSRVVQT---KGERLLNEIDALRRKEAQLTEE 101 (140)
Q Consensus 58 sl~EL~~LE~qLe~aL~~IR~r---K~qll~e~I~~Lk~Ke~~L~ee 101 (140)
+..||..|=++++.|..-||++ |-.+|.+||..|+.+-+.+.++
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~ 74 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEE 74 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999964 6678889999999886655543
No 17
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=68.63 E-value=25 Score=21.72 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
|-.+-|.||...+ ..|..++..|..+|..|...+..
T Consensus 16 AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~~~ 51 (64)
T PF00170_consen 16 AARRSRQRKKQYI----EELEEKVEELESENEELKKELEQ 51 (64)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556688887654 66666666666666666655543
No 18
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=66.50 E-value=34 Score=23.91 Aligned_cols=43 Identities=28% Similarity=0.391 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 69 LEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 69 Le~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
|=.++..+ ......|..+|..|+.....+.+||..|+-.-..-
T Consensus 6 l~~~l~~l-e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 6 LFDRLDQL-EQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 45556778999999999999999999998776553
No 19
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=66.06 E-value=39 Score=24.03 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 64 RLEKSLEGGLSRVVQT-------KGERLLNEIDALRRKEAQLTEENLRLKQ 107 (140)
Q Consensus 64 ~LE~qLe~aL~~IR~r-------K~qll~e~I~~Lk~Ke~~L~eeN~~L~~ 107 (140)
.+.+.+|.|+.-|.+- -.+.+.++|..|..+...|..||..|+.
T Consensus 45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666655321 1223334444555555555566655543
No 20
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.95 E-value=94 Score=28.37 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 60 EELMRLEKSLEGGLSRVV-----QTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR-----~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.++..||.+|+..-.+++ .|+.+.+...|..|+++...-...-..|..++..
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999988887776 3445566678888887755555555556555544
No 21
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.18 E-value=33 Score=28.58 Aligned_cols=44 Identities=36% Similarity=0.431 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 53 ELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105 (140)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L 105 (140)
+-++||.+|-..| -+||.||.+|+ ++|+.|+...+...+|-..+
T Consensus 7 ep~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 7 EPNDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 3456777776555 46999999886 78999999888777765554
No 22
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=61.12 E-value=47 Score=24.53 Aligned_cols=66 Identities=24% Similarity=0.276 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCcchhhhhh-hccccc
Q 032477 60 EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQMYKATHLTPSSAVHLEII-LKTGRV 136 (140)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 136 (140)
.|...||..-.....+|+.++.+| +++...+.=-+.|..-|..+... . ..|.+..|+-|+ ++|++.
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~L--qEL~~Q~va~knLv~RN~~~~~~-~--------~~p~~~i~LPFIlV~T~~~ 67 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQL--QELILQQVAFKNLVQRNRQLEQS-G--------NAPSSGIQLPFILVNTSKK 67 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHS-S--------SS--GEEESS-EEEEEESS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc-c--------CCCCCeeecCEEEEEecCC
Confidence 367889999999999997776654 22222222235566667665544 1 234466666665 555554
No 23
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.10 E-value=41 Score=21.54 Aligned_cols=46 Identities=30% Similarity=0.278 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 61 ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 61 EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
||..||..++.=+.... -+..+...|+..+..+..|+..|..+...
T Consensus 1 ~L~~Le~kle~Li~~~~-----~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLE-----RLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888887766653 33344455556666666666666555443
No 24
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=60.98 E-value=52 Score=22.65 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 65 LEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 65 LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
++...+.++..+..++..+ ...|+.+.++...+...-..+...+.+
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777775555443 667777777777776666666666544
No 25
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=59.93 E-value=20 Score=25.41 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=24.6
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 79 TKGERLL---NEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 79 rK~qll~---e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
-|+++|+ ++++-|+.+.+.|.+.|..|...-.
T Consensus 57 VKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~ 91 (123)
T KOG4797|consen 57 VKTHLMFAVREEVEVLKEQIRELEERNSALERENS 91 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777775 5788888888888888888876643
No 26
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=59.25 E-value=25 Score=24.46 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHH-----------HHhccCcccCCCCCCHHHHH
Q 032477 26 QLESSTYAILSKEMADRT-----------RELRQMKGEELQELNMEELM 63 (140)
Q Consensus 26 ~~~~~e~~~L~~e~e~L~-----------~~~R~l~GEdL~~Lsl~EL~ 63 (140)
+.|.+||+.|+.+++.|- ...|.+.|+-++.-.++++.
T Consensus 8 q~w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~il 56 (99)
T PF13758_consen 8 QTWEAEYEGLKEEIEALPEDDDATREDLLRIRRDFGGSLVTEKEIKEIL 56 (99)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHhcCcccccHHHHHHHh
Confidence 568899999999998872 33455555554444444443
No 27
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=59.11 E-value=55 Score=23.05 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 70 EGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 70 e~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
=.++..+ ......+..++..|+.....+.+||..|+-.-..
T Consensus 7 fd~l~~l-e~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~ 47 (110)
T PRK13169 7 FDALDDL-EQNLGVLLKELGALKKQLAELLEENTALRLENDK 47 (110)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 4455667889999999999999999999877444
No 28
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=57.95 E-value=39 Score=20.24 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
|..+-|.+|.+. +..+..++..|..+|..|..++..
T Consensus 15 AA~r~R~rkk~~----~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 15 AARRSRQRKKQR----EEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666544 466777777888888888777654
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=55.68 E-value=1.2e+02 Score=25.01 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=48.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032477 52 EELQELNMEELMRLEKSLEGGLSRVVQTKGERL--LNEIDALRRKEAQLTEENLRLKQHGLIQM 113 (140)
Q Consensus 52 EdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll--~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~~ 113 (140)
.+++.+...+|..+-..|...-..|.++|..+- ..++..+..+...+.++...+...+.+..
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348889999999999999998888887777654 45777777777777777777777776643
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.28 E-value=1.1e+02 Score=23.87 Aligned_cols=75 Identities=9% Similarity=0.088 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 31 TYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVV--QTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (140)
Q Consensus 31 e~~~L~~e~e~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR--~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k 108 (140)
-+..+.+++..++..+..+-++ .-.....+.+.+..+-..|- ...++-+.+++..++.+...+..+|..+...
T Consensus 94 rlp~le~el~~l~~~l~~~~~~-----~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNT-----WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555554433 11334444444444333332 2233344556666666666666666666544
Q ss_pred Hh
Q 032477 109 GL 110 (140)
Q Consensus 109 ~~ 110 (140)
+.
T Consensus 169 ~~ 170 (206)
T PRK10884 169 II 170 (206)
T ss_pred HH
Confidence 43
No 31
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=53.17 E-value=54 Score=22.62 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 83 RLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 83 ll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+-.++-.-|+++...+.++|..|...+..
T Consensus 12 FvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 12 FVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888999999999999999888776
No 32
>PF14645 Chibby: Chibby family
Probab=51.96 E-value=28 Score=24.67 Aligned_cols=25 Identities=40% Similarity=0.356 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 86 NEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 86 e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
.....++++.+.|.|||+.|+-++.
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777766654
No 33
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=50.39 E-value=1.4e+02 Score=24.59 Aligned_cols=62 Identities=21% Similarity=0.203 Sum_probs=47.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032477 52 EELQELNMEELMRLEKSLEGGLSRVVQTKGERL--LNEIDALRRKEAQLTEENLRLKQHGLIQM 113 (140)
Q Consensus 52 EdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll--~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~~ 113 (140)
++++.|..++|..+-..|..-...|...+.++- ..++..+..+.....+....+...+.+..
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998888877776654 35667777777767777777777776644
No 34
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.30 E-value=1.3e+02 Score=23.39 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 032477 34 ILSKEMADRTR 44 (140)
Q Consensus 34 ~L~~e~e~L~~ 44 (140)
.++..+..++.
T Consensus 90 ~~~~rlp~le~ 100 (206)
T PRK10884 90 SLRTRVPDLEN 100 (206)
T ss_pred cHHHHHHHHHH
Confidence 44555555553
No 35
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=47.83 E-value=1.2e+02 Score=23.61 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 78 QTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 78 ~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.|+-+....+|..||.-.+.|+++|..|+.-++-
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCF 80 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCF 80 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566666677777777777788888888766543
No 36
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=45.99 E-value=93 Score=21.09 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 65 LEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 65 LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
++...+.+...+-.++. .+...|+.+..+...+..+-..+..++.+
T Consensus 57 v~~~~~ea~~~Le~~~e-~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 57 VKQEKEEARTELKERLE-TIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred hhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555433332 33455555655555555555555555543
No 37
>PHA03155 hypothetical protein; Provisional
Probab=45.44 E-value=1.1e+02 Score=21.80 Aligned_cols=54 Identities=17% Similarity=0.062 Sum_probs=39.2
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHH
Q 032477 23 LQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRV 76 (140)
Q Consensus 23 ~~~~~~~~e~~~L~~e~e~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~I 76 (140)
..++.+.+++.+|+.++..|.+.+++=.+.+=..||..+=+-+=.+.-.+|...
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~ 61 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKK 61 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHH
Confidence 345667789999999999999999886676666688877655555554444443
No 38
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=44.53 E-value=1.4e+02 Score=29.11 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 58 NMEELMRLEKSLEGGLSRVVQTKGER--LLNEIDALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 58 sl~EL~~LE~qLe~aL~~IR~rK~ql--l~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
-.+||..|=++.+.+=..-+.|=+.. +...+++|++-.+.|.++...|..++..-
T Consensus 234 yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~l 290 (1195)
T KOG4643|consen 234 YRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKL 290 (1195)
T ss_pred hhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45677777777776665555555554 45677777777777777777777777653
No 39
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=43.37 E-value=90 Score=20.20 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 79 TKGERLLNEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 79 rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
.|.+-..+.|..|+.+...|.++|..|.....
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~ 42 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENE 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45666678888888888888888888765433
No 40
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=42.92 E-value=86 Score=21.64 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032477 89 DALRRKEAQLTEENLRLK 106 (140)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~ 106 (140)
..++++...+..+|..|.
T Consensus 37 ~~~~~e~~~l~~~n~~L~ 54 (105)
T PRK00888 37 AAQQQTNAKLKARNDQLF 54 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 41
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=42.88 E-value=88 Score=20.80 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032477 84 LLNEIDALRRKEAQLTEENLRLKQHGLIQM 113 (140)
Q Consensus 84 l~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~~ 113 (140)
|.+.|+..+.....|..||..|..=|....
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777778999999988887754
No 42
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=42.08 E-value=1.1e+02 Score=20.82 Aligned_cols=36 Identities=22% Similarity=0.096 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 77 VQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 77 R~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
++.=......+++.|..+...+..+|..|...|.+.
T Consensus 71 ~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 71 RAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444556778999999999999999999988764
No 43
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.03 E-value=1.3e+02 Score=21.33 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 83 RLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 83 ll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.|..+|..++.+...|...|+.|+.+|..
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999999998864
No 44
>PRK09343 prefoldin subunit beta; Provisional
Probab=40.92 E-value=1.3e+02 Score=21.22 Aligned_cols=42 Identities=17% Similarity=0.026 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 69 LEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 69 Le~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.+.+...|..| -+.+...|+.+.++...+.+.-..+..++.+
T Consensus 69 ~~e~~~~l~~r-~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 69 KTKVEKELKER-KELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444554333 3344566777777766666666666666554
No 45
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.41 E-value=79 Score=19.71 Aligned_cols=29 Identities=31% Similarity=0.297 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 84 LLNEIDALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 84 l~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
+..++..++++...+..+|..|..++...
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777887777776653
No 46
>PRK11637 AmiB activator; Provisional
Probab=40.29 E-value=2.3e+02 Score=24.02 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 032477 28 ESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGE--RLLNEIDALRRKEAQLTEENLRL 105 (140)
Q Consensus 28 ~~~e~~~L~~e~e~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~q--ll~e~I~~Lk~Ke~~L~eeN~~L 105 (140)
...++..+.+++..++..++. ...+|..|+.+|...-..|.....+ .+..+|..++.+...+..+-...
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~---------~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRAS---------LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444 3356778888888887777655444 34556777776666655555555
Q ss_pred HHHHhh
Q 032477 106 KQHGLI 111 (140)
Q Consensus 106 ~~k~~~ 111 (140)
...+..
T Consensus 123 ~~~l~~ 128 (428)
T PRK11637 123 ERLLAA 128 (428)
T ss_pred HHHHHH
Confidence 554443
No 47
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.99 E-value=1.7e+02 Score=22.30 Aligned_cols=9 Identities=11% Similarity=0.047 Sum_probs=4.9
Q ss_pred HHHHHHhhc
Q 032477 3 QVIDRHNLH 11 (140)
Q Consensus 3 ~iLeRY~~~ 11 (140)
.+|++|...
T Consensus 95 ~~l~~y~~l 103 (189)
T PF10211_consen 95 MTLDAYQTL 103 (189)
T ss_pred HHHHHHHHH
Confidence 456666543
No 48
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=39.71 E-value=40 Score=23.06 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032477 60 EELMRLEKSLEGGLSRVVQTK 80 (140)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR~rK 80 (140)
.+|+++|++-+.+|..|+.+=
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd 48 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKD 48 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 489999999999999997653
No 49
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.67 E-value=1.7e+02 Score=21.93 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 60 EELMRLEKSLEGGLSRVVQ----------TKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR~----------rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.+|..+|..++.+-.+..+ .+..-..++|+.++++......+...|+++...
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666665555432 234456678888888888888888888877765
No 50
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=38.32 E-value=2.8e+02 Score=24.49 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~ 107 (140)
+..+|-.+|.+.+...++.+.+....+.|+|+.|.+
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666666666777777666666677766643
No 51
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.75 E-value=1.8e+02 Score=21.98 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 54 LQELNMEELMRLEKSLEGGLSRVVQT--KGERLLNEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 54 L~~Lsl~EL~~LE~qLe~aL~~IR~r--K~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
..++|+++....=+++.........- -.+-+..++..|+++...|..+|..|..++.
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999887777777643322221 1234567778888888888888888877654
No 52
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=37.34 E-value=2.4e+02 Score=23.48 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCcchh
Q 032477 68 SLEGGLSRVVQTKGERL---LN----EIDALRRKEAQLTEENLRLKQHGLIQMYKATHLTPSSAVH 126 (140)
Q Consensus 68 qLe~aL~~IR~rK~qll---~e----~I~~Lk~Ke~~L~eeN~~L~~k~~~~~~~~~~~~~~~~~~ 126 (140)
.++..+.+.|.-|..+= .. -++.|.++.-.|..++..|..++.. |++ .|..|.+.++
T Consensus 153 ~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~-~~s-~~~s~~d~~~ 216 (310)
T PF09755_consen 153 AKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ-PVS-APPSPRDTVN 216 (310)
T ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccC-CCCCcchHHh
Confidence 44555667777666521 11 1456777888899999999999877 333 3345555443
No 53
>smart00340 HALZ homeobox associated leucin zipper.
Probab=37.30 E-value=79 Score=18.63 Aligned_cols=24 Identities=38% Similarity=0.356 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 89 DALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
+.|++=-..|.+||..|++.+.+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778999999999999884
No 54
>PF15058 Speriolin_N: Speriolin N terminus
Probab=35.77 E-value=87 Score=24.42 Aligned_cols=32 Identities=31% Similarity=0.255 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 80 KGERLLNEIDALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 80 K~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
+++.++.+.++||+.++ |..||..|+.-+.+.
T Consensus 13 qierLv~ENeeLKKlVr-LirEN~eLksaL~ea 44 (200)
T PF15058_consen 13 QIERLVRENEELKKLVR-LIRENHELKSALGEA 44 (200)
T ss_pred HHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 34556688899999998 667777887776653
No 55
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=35.33 E-value=2.4e+02 Score=22.87 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=31.3
Q ss_pred cCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 52 EELQELNMEELMRLEKSLEG--GLSRVVQTKGERL---LNEIDALRRKEAQLTEENLRLKQH 108 (140)
Q Consensus 52 EdL~~Lsl~EL~~LE~qLe~--aL~~IR~rK~qll---~e~I~~Lk~Ke~~L~eeN~~L~~k 108 (140)
+-|++||.+|=.+ -..|.+ |--.-|.||...| ..+|..|-.....|..+|..|+.+
T Consensus 59 ~RL~HLS~EEK~~-RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 59 RRLDHLSWEEKVQ-RRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HhhcccCHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467787776432 223332 4455677776654 336666666555566666655544
No 56
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.30 E-value=91 Score=23.58 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 032477 62 LMRLEKSLEGGLSRVVQTKGERLLNEI---DALRRKEAQLTEENLRLKQHG 109 (140)
Q Consensus 62 L~~LE~qLe~aL~~IR~rK~qll~e~I---~~Lk~Ke~~L~eeN~~L~~k~ 109 (140)
|..+|..+..|+.+- -+|..+| +.|+.+.+.|.+|-..|+..+
T Consensus 2 LeD~EsklN~AIERn-----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-----ALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888762 3444344 445555566666666666555
No 57
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.01 E-value=1.9e+02 Score=21.55 Aligned_cols=28 Identities=29% Similarity=0.191 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 84 LLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 84 l~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+.++...|..+...|..+|+.|..++..
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455667778888888888888866654
No 58
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=34.88 E-value=60 Score=26.95 Aligned_cols=53 Identities=32% Similarity=0.342 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHH-------------------------------HHHHHHHHHHHHHHHHH
Q 032477 60 EELMRLEKSLEGGLSRVV------QTKGERLL-------------------------------NEIDALRRKEAQLTEEN 102 (140)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR------~rK~qll~-------------------------------e~I~~Lk~Ke~~L~eeN 102 (140)
.....||.+|..+...|. +.|+.++. -+++.|++|.+.|.+||
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 566678888888877776 45555532 12478999999999999
Q ss_pred HHHHHHHhhh
Q 032477 103 LRLKQHGLIQ 112 (140)
Q Consensus 103 ~~L~~k~~~~ 112 (140)
..|+......
T Consensus 177 ~~LR~Ea~~L 186 (306)
T PF04849_consen 177 EQLRSEASQL 186 (306)
T ss_pred HHHHHHHHHh
Confidence 9999887653
No 59
>PHA03155 hypothetical protein; Provisional
Probab=34.77 E-value=88 Score=22.29 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032477 88 IDALRRKEAQLTEENLRLKQHGLIQM 113 (140)
Q Consensus 88 I~~Lk~Ke~~L~eeN~~L~~k~~~~~ 113 (140)
++.|..+...|.-||+.|++++..+.
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~ 35 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHG 35 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 57788888889999999999998764
No 60
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=34.31 E-value=1.7e+02 Score=25.57 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=15.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 032477 53 ELQELNMEELMRLEKSLEGGLSRVVQ 78 (140)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~aL~~IR~ 78 (140)
+|..+|..-=.-+..++++||.-|..
T Consensus 2 ~Lk~lS~~GekyvdeEik~Al~GvKq 27 (436)
T PF01093_consen 2 NLKELSEQGEKYVDEEIKNALNGVKQ 27 (436)
T ss_pred chHHHhHhCchhHHHHHHHHHHHHHH
Confidence 34445555555566677777766643
No 61
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.04 E-value=1.9e+02 Score=25.60 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 63 MRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 63 ~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
..||++|+.- | .=.++|..+...++.|...+..+|..|..++.
T Consensus 79 sELEKqLaaL----r-qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 79 AQMQKQYEEI----R-RELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHH----H-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544 2 11245556777888888899999999999984
No 62
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=33.54 E-value=87 Score=17.17 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 61 ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRR 93 (140)
Q Consensus 61 EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~ 93 (140)
.+..|+..+..|+..-.--+--.+-++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 466788888888887777777777777777664
No 63
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=33.27 E-value=70 Score=26.20 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=34.6
Q ss_pred HHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 41 DRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERL 84 (140)
Q Consensus 41 ~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll 84 (140)
.++..+++..=|+|.+|+++||.+|=.+|...+..|-.-=++.+
T Consensus 203 ~~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~v 246 (285)
T PF06937_consen 203 SLQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDVFEELTQQV 246 (285)
T ss_pred cccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888999999999999999999888877765444443
No 64
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.80 E-value=2.8e+02 Score=22.48 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 78 QTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 78 ~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.+.++.|..+|...++-+..+.++...|+..+..
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777788888888777765
No 65
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=30.21 E-value=2.6e+02 Score=25.75 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 61 ELMRLEKSLEGGLSRVVQTKGERL---LNEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 61 EL~~LE~qLe~aL~~IR~rK~qll---~e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
.|..|+++-+.=+..-+.++..+= .++++.||...+.|++|++.|.-...
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r 57 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELR 57 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788887777777776666543 46888899999999999988855543
No 66
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=30.14 E-value=51 Score=28.93 Aligned_cols=56 Identities=25% Similarity=0.181 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 56 ELNMEELMRLEKSLEGGLSRVVQT-------------KGERLL----------NEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 56 ~Lsl~EL~~LE~qLe~aL~~IR~r-------------K~qll~----------e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+.++.+..-|-+-=|.+|.+||.+ |.+.+. .+-.+|++|+..|...|..|..++..
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 466777777777777788888732 221110 12245666676777777777666554
No 67
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=28.85 E-value=1.4e+02 Score=18.50 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHhccC
Q 032477 28 ESSTYAILSKEMADRTRELRQM 49 (140)
Q Consensus 28 ~~~e~~~L~~e~e~L~~~~R~l 49 (140)
...|.+.|++++..|+..+.++
T Consensus 38 l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 38 LIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788999999998877664
No 68
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=28.68 E-value=1.1e+02 Score=18.54 Aligned_cols=11 Identities=45% Similarity=0.546 Sum_probs=6.9
Q ss_pred CCCCCHHHHHH
Q 032477 54 LQELNMEELMR 64 (140)
Q Consensus 54 L~~Lsl~EL~~ 64 (140)
|..+|++||++
T Consensus 5 Lk~ls~~eL~~ 15 (49)
T PF11629_consen 5 LKFLSYEELQQ 15 (49)
T ss_dssp GGGS-HHHHHH
T ss_pred HhhCCHHHHHH
Confidence 45678888765
No 69
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=28.44 E-value=1.2e+02 Score=18.37 Aligned_cols=28 Identities=32% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 032477 53 ELQELNMEELMRLEKSLEGGLSRVVQTK 80 (140)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~aL~~IR~rK 80 (140)
||-.+|.+||...-..+...+-..|..+
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888887543
No 70
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=28.21 E-value=3.9e+02 Score=26.50 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 27 LESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRR 93 (140)
Q Consensus 27 ~~~~e~~~L~~e~e~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~ 93 (140)
-..+.+..|++++..|+.+.-.|. .+-+...+-|...||+||+.+=.++=.-=---+-.+|..|..
T Consensus 1128 K~ia~lnnlqqElklLRnEK~Rmh-~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~ 1193 (1439)
T PF12252_consen 1128 KAIANLNNLQQELKLLRNEKIRMH-SGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEK 1193 (1439)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhc-cCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 344667788999999988765544 445569999999999999987666543222222345555544
No 71
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=26.74 E-value=2.2e+02 Score=19.67 Aligned_cols=29 Identities=28% Similarity=0.202 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 83 RLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 83 ll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
-..+++..|+++...|..||..|.+.+.-
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999988877643
No 72
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=26.22 E-value=4.2e+02 Score=23.51 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=48.1
Q ss_pred HHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 41 DRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105 (140)
Q Consensus 41 ~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L 105 (140)
..+..+|.++. + .-|+.|+-.+-..+...+..++++.+++ ..+|+.|..|...|.+.-..+
T Consensus 407 ~Vk~~qRkl~e-~--~nsl~d~aK~~~~myd~~~~l~~~q~~l-e~qI~~Le~kl~~l~~~l~s~ 467 (489)
T KOG3684|consen 407 SVKWEQRKLSE-Q--ANSLVDLAKTQNDMYDLLQELHSRQEEL-EKQIDTLESKLEALTASLSSL 467 (489)
T ss_pred HHHHHHHHHHh-h--cccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence 44556788774 4 4678999999999999999999998876 579999999987776655433
No 73
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=26.11 E-value=1.4e+02 Score=19.08 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 59 MEELMRLEKSLEGGLSRVVQTKGER 83 (140)
Q Consensus 59 l~EL~~LE~qLe~aL~~IR~rK~ql 83 (140)
-.|+..+|+.|.....-+..||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999998888764
No 74
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.80 E-value=2.7e+02 Score=20.35 Aligned_cols=61 Identities=26% Similarity=0.278 Sum_probs=33.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 52 EELQELNMEELMRLEKSLEGGLSRVVQTKGE--RLLNEI---------DALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 52 EdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~q--ll~e~I---------~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
+.++.+|.++|..+..++..--..+..-+.+ -+..++ +.|......+..++..|..++..-
T Consensus 64 ~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 64 DELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777776665544433333322222 111222 455666777888888887777653
No 75
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=25.69 E-value=1.3e+02 Score=21.26 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 84 LLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 84 l~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+..+|..+++....+.+||..|+-....
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~ 47 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEK 47 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHH
Confidence 3578899999999999999999765443
No 76
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.39 E-value=1.9e+02 Score=18.40 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 83 RLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 83 ll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.+..++..++++...+..+|..|..++..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888877765
No 77
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=25.16 E-value=92 Score=25.25 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=32.7
Q ss_pred HHHHHHHHHhccCcc--cCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032477 37 KEMADRTRELRQMKG--EELQELNMEELMRLEKSLEGGLSRVV 77 (140)
Q Consensus 37 ~e~e~L~~~~R~l~G--EdL~~Lsl~EL~~LE~qLe~aL~~IR 77 (140)
..-..+-..+|++.. ++=-+||++++..+|.+....|.++|
T Consensus 215 ~~r~~fl~~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 215 QERRLFTNFHRQVFCWLDKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred HHHHHHHHHHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 334556667788765 56667999999999999999999987
No 78
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=25.08 E-value=99 Score=18.16 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 79 TKGERLLNEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 79 rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
+....+.-.|..+..+.-.|..||..|+..+.
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34455666788888888889999998887754
No 79
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=24.45 E-value=1.1e+02 Score=15.56 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q 032477 31 TYAILSKEMADRTRE 45 (140)
Q Consensus 31 e~~~L~~e~e~L~~~ 45 (140)
|+.+++..|..|+..
T Consensus 2 E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 2 EMNRLRNRISDLERQ 16 (23)
T ss_pred hHHHHHHHHHHHHHH
Confidence 455666666666644
No 80
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.45 E-value=5.4e+02 Score=23.39 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=52.5
Q ss_pred HHHHHhhchhccccCCCChhHH--------hhhHHHHHHHHHHHHHHHHHhccCcccCCCCCCHHHHHH-HH---HHHHH
Q 032477 4 VIDRHNLHSQNLHKFDQPSLQL--------QLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMR-LE---KSLEG 71 (140)
Q Consensus 4 iLeRY~~~~~~~~~~~~~~~~~--------~~~~~e~~~L~~e~e~L~~~~R~l~GEdL~~Lsl~EL~~-LE---~qLe~ 71 (140)
+++=|..+..+..+.+....+. .....+++.+++.+..|...+--.+-.+-.-=|+.+... |+ +..+.
T Consensus 201 ~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~ 280 (581)
T KOG0995|consen 201 TIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQA 280 (581)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHH
Confidence 5566776666554433332221 123345666666666665554432222222224444333 33 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhh
Q 032477 72 GLSRVVQTKGERLLNEIDALR-------RKEAQLTEENLRLKQHGLIQM 113 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk-------~Ke~~L~eeN~~L~~k~~~~~ 113 (140)
+++..-+ |.+-|...++.++ .....++.+|..|+.++..+.
T Consensus 281 y~~~~~~-k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~ 328 (581)
T KOG0995|consen 281 YVSQMKS-KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQG 328 (581)
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444322 2233333343333 334557777778877777654
No 81
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=24.24 E-value=9.3 Score=22.12 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=20.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 53 ELQELNMEELMRLEKSLEGGLSRVVQTKGERLLN 86 (140)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e 86 (140)
||..+|+.||..+=+.+...- .-+-+|.+++..
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~-~~~~~K~eLI~~ 33 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEG-YSKMRKQELIFA 33 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TT-GCCS-HHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCC-CCcCCHHHHHHH
Confidence 467789999999988877632 224567777643
No 82
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.14 E-value=2.2e+02 Score=22.88 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 032477 89 DALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.+++.+...|..||..|+.++.+
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~ 240 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQ 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555443
No 83
>smart00030 CLb CLUSTERIN Beta chain.
Probab=22.60 E-value=3.8e+02 Score=21.00 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=17.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 032477 53 ELQELNMEELMRLEKSLEGGLSRVVQTK 80 (140)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~aL~~IR~rK 80 (140)
+|..+|..-=.-+.+++++||.-|..-|
T Consensus 8 ~Lk~lS~~G~kyvd~EI~nAl~GvKqMK 35 (206)
T smart00030 8 ELQEMSTQGSKYINKEIKNALKGVKQIK 35 (206)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556777888877775433
No 84
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=22.31 E-value=1.7e+02 Score=23.37 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=18.9
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 032477 60 EELMRLEKSLE---GGLSRVVQTKGERLL 85 (140)
Q Consensus 60 ~EL~~LE~qLe---~aL~~IR~rK~qll~ 85 (140)
.||.+||.|++ .++.++++.+.++..
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~ 43 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQS 43 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888886654 478888888877654
No 85
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.20 E-value=4.4e+02 Score=21.49 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Q 032477 60 EELMRLEKSLEGGLSRVVQTKGE--RLLNEIDALRRKEAQ----LTEENLRLKQHGLI 111 (140)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR~rK~q--ll~e~I~~Lk~Ke~~----L~eeN~~L~~k~~~ 111 (140)
.+|..|-.+++....++-+.+.+ -...+|+.++.+... +.+.+..|..++..
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777655544 334566666665433 44455555555544
No 86
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=22.15 E-value=52 Score=23.07 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=16.3
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 032477 52 EELQELNMEELMRLEKSLE 70 (140)
Q Consensus 52 EdL~~Lsl~EL~~LE~qLe 70 (140)
.-+++||.+|++.|..+++
T Consensus 85 kRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 85 KRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHhCCHHHHHHHHHHhc
Confidence 4578899999999998876
No 87
>PRK14127 cell division protein GpsB; Provisional
Probab=22.10 E-value=2.9e+02 Score=19.38 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc---ccCCCCcchhhhhh
Q 032477 84 LLNEIDALRRKEAQLTEENLRLKQHGLIQMYKA---THLTPSSAVHLEII 130 (140)
Q Consensus 84 l~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~~~~~---~~~~~~~~~~~~~~ 130 (140)
+..++..|+.+...+......+..++....... ....+..+.|.|+.
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiL 91 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDIL 91 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHH
Confidence 344555555555555555555555555432111 01223457777764
No 88
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=22.00 E-value=64 Score=20.32 Aligned_cols=37 Identities=19% Similarity=0.489 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 55 QELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEA 96 (140)
Q Consensus 55 ~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~ 96 (140)
+++.++++..+|.- ...|++=.+-..-+|+.++.+-+
T Consensus 2 d~~~~d~~~~~e~~-----~~sr~k~~KRKWREIEAikDr~r 38 (59)
T PF12065_consen 2 DSFDFDDLLEMERP-----RRSRSKPKKRKWREIEAIKDRQR 38 (59)
T ss_pred CcchHHHHHhhccC-----ccccCCccchhHHHHHHHHHHHH
Confidence 45677777777654 33343333344578888888754
No 89
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=21.69 E-value=59 Score=24.18 Aligned_cols=17 Identities=53% Similarity=0.653 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHHH
Q 032477 54 LQELNMEELMRLEKSLE 70 (140)
Q Consensus 54 L~~Lsl~EL~~LE~qLe 70 (140)
|..||.+||.+|+..|+
T Consensus 21 L~~LS~EEL~~L~~el~ 37 (147)
T PF03250_consen 21 LAKLSPEELEELENELE 37 (147)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 56799999999998774
No 90
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=21.56 E-value=1.8e+02 Score=21.48 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (140)
Q Consensus 71 ~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k 108 (140)
.++.-=|.-|.+ +..+|+.|+.|...|.+-...|+.+
T Consensus 99 ~d~~aWk~hr~~-ID~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 99 QDPKAWKDHRLH-IDHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred cCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333433 3679999999999999999888765
No 91
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=21.30 E-value=2.5e+02 Score=18.42 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 81 GERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 81 ~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
...+..+++.+++....+.++|..|.-+...
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667899999999999999999877654
No 92
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=21.09 E-value=2.4e+02 Score=18.15 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 64 RLEKSLEGGLSRVV---QTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 64 ~LE~qLe~aL~~IR---~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.||.+|-.|+..+= .+.-+-.......|+..-..-..+|..|+.++..
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~ 53 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNN 53 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 57888888877664 3444445556667766655555555555555544
No 93
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=20.94 E-value=1.5e+02 Score=18.56 Aligned_cols=29 Identities=34% Similarity=0.326 Sum_probs=22.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 032477 52 EELQELNMEELMRLEKSLEGGLSRVVQTK 80 (140)
Q Consensus 52 EdL~~Lsl~EL~~LE~qLe~aL~~IR~rK 80 (140)
.|+-.+|.+||...-..+..-|-..|..+
T Consensus 4 ~elr~ls~~eL~~~l~~lkkeL~~lR~~~ 32 (66)
T PRK00306 4 KELRELSVEELNEKLLELKKELFNLRFQK 32 (66)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888877544
No 94
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=20.47 E-value=3.2e+02 Score=23.30 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=23.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 51 GEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQL 98 (140)
Q Consensus 51 GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L 98 (140)
.-+|++.|++|+-.|-+. +.-|..+++.|+.|+..|
T Consensus 23 ~~~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 23 NHELEGVSIDENFALRME------------NHSLKKENNDLKIEVERL 58 (420)
T ss_pred cccccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHH
Confidence 347888999988777432 223445667777777666
No 95
>PHA03162 hypothetical protein; Provisional
Probab=20.19 E-value=3.6e+02 Score=19.74 Aligned_cols=64 Identities=8% Similarity=0.064 Sum_probs=40.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhccCcccC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 25 LQLESSTYAILSKEMADRTRELRQMKGEE----LQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDAL 91 (140)
Q Consensus 25 ~~~~~~e~~~L~~e~e~L~~~~R~l~GEd----L~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~L 91 (140)
++.+.+++.+|+.|+..|.+.+|+=.|.+ =..||..+=+-+=.. ++++.-+.-.+.|...|..+
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s---~v~~Lts~A~kKIe~KVr~~ 82 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGA---ATAALTRQAAKKIEAKIRHE 82 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999998877765 233666655444333 44444444444444444433
No 96
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=20.18 E-value=2.5e+02 Score=23.45 Aligned_cols=43 Identities=26% Similarity=0.215 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 64 RLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 64 ~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.|-++=|.|-.+ |.+|.+. |+.|..++..|++.|+.|-..+..
T Consensus 295 RLmKNREAAREC-RRKKKEY----VKCLENRVAVLENQNKaLIEELKt 337 (348)
T KOG3584|consen 295 RLMKNREAAREC-RRKKKEY----VKCLENRVAVLENQNKALIEELKT 337 (348)
T ss_pred HHHhhHHHHHHH-HHhHhHH----HHHHHhHHHHHhcccHHHHHHHHH
Confidence 344555666555 6666654 588888888888888888666544
Done!