Query 032477
Match_columns 140
No_of_seqs 115 out of 1037
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 00:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 94.8 0.28 9.4E-06 32.0 8.3 43 57-104 3-45 (81)
2 2dgc_A Protein (GCN4); basic d 80.9 5.8 0.0002 24.2 5.9 36 72-111 20-55 (63)
3 1jnm_A Proto-oncogene C-JUN; B 80.8 7 0.00024 23.5 6.3 37 72-112 12-48 (62)
4 1dh3_A Transcription factor CR 79.5 7.3 0.00025 23.0 5.9 33 75-111 15-47 (55)
5 2wt7_A Proto-oncogene protein 77.8 9 0.00031 23.1 6.0 36 72-111 13-48 (63)
6 1t2k_D Cyclic-AMP-dependent tr 77.1 9 0.00031 22.9 5.9 36 72-111 12-47 (61)
7 1dip_A Delta-sleep-inducing pe 75.6 5.1 0.00018 25.5 4.5 29 82-110 18-46 (78)
8 2oqq_A Transcription factor HY 71.8 11 0.00038 21.2 5.1 28 83-110 14-41 (42)
9 1ci6_A Transcription factor AT 68.4 17 0.00058 21.9 6.0 36 72-111 13-48 (63)
10 2yy0_A C-MYC-binding protein; 67.6 14 0.00048 21.7 5.0 30 82-111 22-51 (53)
11 1j1d_C Troponin I, TNI; THIN f 59.4 42 0.0015 23.4 8.7 51 33-83 29-84 (133)
12 2dfs_A Myosin-5A; myosin-V, in 57.5 1.1E+02 0.0039 28.2 11.3 24 89-112 1019-1042(1080)
13 2oa5_A Hypothetical protein BQ 54.2 14 0.00048 25.1 3.6 25 88-112 10-34 (110)
14 1a93_B MAX protein, coiled coi 53.2 25 0.00086 18.9 4.0 25 78-102 6-30 (34)
15 3s9g_A Protein hexim1; cyclin 50.5 53 0.0018 21.9 6.9 59 52-111 25-90 (104)
16 1gd2_E Transcription factor PA 49.6 44 0.0015 20.7 6.4 41 71-111 18-61 (70)
17 1j1e_C Troponin I, TNI; THIN f 47.5 81 0.0028 23.1 8.2 65 34-98 30-105 (180)
18 1ytz_T Troponin T; muscle, THI 46.7 58 0.002 21.8 5.8 31 53-83 38-68 (107)
19 2w6a_A ARF GTPase-activating p 46.5 47 0.0016 20.1 8.7 53 55-107 8-62 (63)
20 2v71_A Nuclear distribution pr 45.4 89 0.0031 23.0 10.2 26 22-47 9-34 (189)
21 1j1d_B Troponin T, TNT; THIN f 42.4 54 0.0018 22.0 5.1 32 53-84 38-69 (106)
22 2oxj_A Hybrid alpha/beta pepti 39.5 41 0.0014 18.0 3.3 22 89-110 4-25 (34)
23 1hjb_A Ccaat/enhancer binding 39.4 75 0.0026 20.4 6.0 22 90-111 54-75 (87)
24 3m48_A General control protein 38.1 36 0.0012 18.1 2.9 21 90-110 4-24 (33)
25 1g6u_A Domain swapped dimer; d 37.7 54 0.0018 18.3 4.7 22 55-76 15-36 (48)
26 1gu4_A CAAT/enhancer binding p 37.5 76 0.0026 20.0 6.0 36 72-111 26-61 (78)
27 2aze_A Transcription factor DP 36.5 1.2E+02 0.004 21.8 7.8 50 57-108 2-51 (155)
28 2jee_A YIIU; FTSZ, septum, coi 35.2 87 0.003 20.0 5.6 33 79-111 13-45 (81)
29 1a92_A Delta antigen; leucine 33.6 71 0.0024 18.5 5.2 37 66-104 3-39 (50)
30 1nkp_B MAX protein, MYC proto- 33.2 87 0.003 19.4 6.3 38 69-111 42-79 (83)
31 3nmd_A CGMP dependent protein 33.0 90 0.0031 19.5 7.4 45 62-111 21-65 (72)
32 1go4_E MAD1 (mitotic arrest de 32.8 65 0.0022 21.4 4.2 24 87-110 13-36 (100)
33 1e52_A Excinuclease ABC subuni 31.9 46 0.0016 20.1 3.1 42 53-94 13-58 (63)
34 3na7_A HP0958; flagellar bioge 31.4 1.6E+02 0.0056 22.0 8.8 37 58-94 88-126 (256)
35 1am9_A Srebp-1A, protein (ster 30.2 90 0.0031 19.4 4.5 27 86-112 50-76 (82)
36 3c3f_A Alpha/beta peptide with 29.7 69 0.0023 17.1 3.3 22 89-110 4-25 (34)
37 3p57_A Myocyte-specific enhanc 29.4 14 0.0005 24.1 0.5 14 1-14 61-74 (90)
38 3thf_A Protein shroom; coiled- 28.8 1E+02 0.0035 22.8 5.1 35 73-111 10-44 (190)
39 1uii_A Geminin; human, DNA rep 26.0 1.3E+02 0.0046 19.2 5.3 30 82-111 49-78 (83)
40 2l5g_A GPS2 protein, G protein 25.9 88 0.003 17.1 3.7 20 86-105 15-34 (38)
41 2bni_A General control protein 25.8 83 0.0028 16.8 3.1 20 90-109 5-24 (34)
42 3s4r_A Vimentin; alpha-helix, 24.9 1.4E+02 0.0049 19.1 8.1 29 83-111 53-81 (93)
43 3qh9_A Liprin-beta-2; coiled-c 24.7 1.4E+02 0.0048 19.0 5.6 34 77-110 17-50 (81)
44 2zxx_A Geminin; coiled-coil, c 24.2 1.1E+02 0.0039 19.4 4.0 30 82-111 37-66 (79)
45 1wlq_A Geminin; coiled-coil; 2 23.8 1.2E+02 0.0041 19.5 4.1 30 82-111 41-70 (83)
46 2jo8_A Serine/threonine-protei 23.6 1E+02 0.0035 17.9 3.5 11 54-64 7-17 (51)
47 3c3g_A Alpha/beta peptide with 23.5 92 0.0032 16.5 3.9 20 90-109 4-23 (33)
48 3oja_B Anopheles plasmodium-re 23.4 3.1E+02 0.011 22.5 8.6 25 87-111 552-576 (597)
49 3hnw_A Uncharacterized protein 23.0 1.9E+02 0.0065 19.9 10.4 23 87-109 111-133 (138)
50 1m1j_C Fibrinogen gamma chain; 22.8 1.8E+02 0.006 23.9 6.0 45 2-52 26-70 (409)
51 1ci6_A Transcription factor AT 22.8 1.3E+02 0.0044 17.8 5.6 30 81-110 32-61 (63)
52 3s9g_A Protein hexim1; cyclin 22.3 1.8E+02 0.0061 19.3 8.3 61 27-108 34-94 (104)
53 1hjb_A Ccaat/enhancer binding 21.2 1.7E+02 0.0058 18.7 5.6 36 72-111 26-61 (87)
54 3q4f_C DNA repair protein XRCC 20.8 1.2E+02 0.0041 22.3 4.1 23 86-108 161-183 (186)
55 2w6b_A RHO guanine nucleotide 20.0 1.5E+02 0.0051 17.5 4.6 28 84-111 8-35 (56)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.76 E-value=0.28 Score=31.99 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR 104 (140)
Q Consensus 57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~ 104 (140)
+|++=|.+||..++.|+..| .++..+|+.|+.|...|..++..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998 67777888888887776665555
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=80.88 E-value=5.8 Score=24.17 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
|-.+.|.||.+. +..|..++..|..+|..|...+..
T Consensus 20 AArrsR~RK~~~----~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 20 AARRSRARKLQR----MKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777755 477788888888888888777654
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.83 E-value=7 Score=23.47 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
|..+-|.||.+. +..|..++..|..+|..|...+...
T Consensus 12 AA~k~R~rKk~~----~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 12 AASKSRKRKLER----IARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777755 4788888888888888888887654
No 4
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=79.53 E-value=7.3 Score=23.03 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 75 RVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 75 ~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+-|.||... ++.|..++..|..+|..|..++..
T Consensus 15 rSR~RKk~~----~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 15 ESRRKKKEY----VKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777644 588888899999999999988765
No 5
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=77.76 E-value=9 Score=23.11 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
|..+-|.||.+. +..|..++..|..+|..|...+..
T Consensus 13 AA~rcR~rKk~~----~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 13 AAAKCRNRRREL----TDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334448888765 477888888888888888887765
No 6
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=77.08 E-value=9 Score=22.86 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
|..+-|.+|.+. +..|..++..|..+|..|..++..
T Consensus 12 AA~k~R~rKk~~----~~~Le~~~~~L~~~n~~L~~~i~~ 47 (61)
T 1t2k_D 12 AASRSRQKRKVW----VQSLEKKAEDLSSLNGQLQSEVTL 47 (61)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444558888765 477777777788888888777654
No 7
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=75.58 E-value=5.1 Score=25.50 Aligned_cols=29 Identities=38% Similarity=0.365 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 82 ERLLNEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 82 qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
+.+.++|.+|..+...|..||..|+.-..
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46778999999999999999999987654
No 8
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=71.85 E-value=11 Score=21.25 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 83 RLLNEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 83 ll~e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
-|...+.+|..++..|+.||..|++.+.
T Consensus 14 ~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3455678889999999999999988663
No 9
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.37 E-value=17 Score=21.93 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
|..+-|.+|.+. +..|..+...|..+|..|..++..
T Consensus 13 AA~R~R~KKk~~----~~~le~~~~~L~~~N~~L~~~i~~ 48 (63)
T 1ci6_A 13 AATRYRQKKRAE----QEALTGECKELEKKNEALKERADS 48 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667666543 466777777777777777777654
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.57 E-value=14 Score=21.70 Aligned_cols=30 Identities=30% Similarity=0.302 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 82 ERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 82 qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
..|..++..|+.|...|.+++..|+.++..
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567788888888888888888888753
No 11
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=59.37 E-value=42 Score=23.43 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhccCcc-----cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 33 AILSKEMADRTRELRQMKG-----EELQELNMEELMRLEKSLEGGLSRVVQTKGER 83 (140)
Q Consensus 33 ~~L~~e~e~L~~~~R~l~G-----EdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~ql 83 (140)
+.|.++-+......+.++. -+++++|.++|+.+=+.|...+..+=+-|..+
T Consensus 29 e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 29 QELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3455555555555555555 38899999999999999999998887777655
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=57.51 E-value=1.1e+02 Score=28.17 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 89 DALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
+.|+.++..|.++|..|++++.+.
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888999999998887663
No 13
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=54.18 E-value=14 Score=25.14 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 88 IDALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 88 I~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
++.|-.+...|+-||+.|++++...
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~~ 34 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKSS 34 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677788888999999999999763
No 14
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=53.16 E-value=25 Score=18.91 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 78 QTKGERLLNEIDALRRKEAQLTEEN 102 (140)
Q Consensus 78 ~rK~qll~e~I~~Lk~Ke~~L~eeN 102 (140)
.||..-....|+.|+++...|.++-
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 4677777778888777766666554
No 15
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=50.47 E-value=53 Score=21.90 Aligned_cols=59 Identities=31% Similarity=0.368 Sum_probs=32.4
Q ss_pred cCCCCCCHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 52 EELQELNMEELM----RLEKSLEGGLSR---VVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 52 EdL~~Lsl~EL~----~LE~qLe~aL~~---IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
|.|.++|=.||. .||..++.+-.. .|..- .-.-..|..|..++..|..||..|...-..
T Consensus 25 ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~-~~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 25 ESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLES-KRLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556655554 455555554221 12211 112457777777877788888877665443
No 16
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=49.63 E-value=44 Score=20.68 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 71 GGLSRVVQTKGERLL---NEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 71 ~aL~~IR~rK~qll~---e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.|=...|.||.+-|. .++..|......+..+|..|+..+..
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566788876553 35555555555566777777666554
No 17
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=47.51 E-value=81 Score=23.14 Aligned_cols=65 Identities=26% Similarity=0.312 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhccCccc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 032477 34 ILSKEMADRTRELRQMKGE-----ELQELNMEELMRLEKSLEGGLSRVVQTKGERLL------NEIDALRRKEAQL 98 (140)
Q Consensus 34 ~L~~e~e~L~~~~R~l~GE-----dL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~------e~I~~Lk~Ke~~L 98 (140)
.|.++-+.....-+.++.| ++++||.++|+.+=..|...+..+=+-|..+-. .+|..|+.++..+
T Consensus 30 ~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 4555555555555555543 888899999999999999999888777766532 2455555555544
No 18
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=46.71 E-value=58 Score=21.82 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 53 ELQELNMEELMRLEKSLEGGLSRVVQTKGER 83 (140)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~aL~~IR~rK~ql 83 (140)
++++||.++|+.+=++|...+..+=+-|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8999999999999999999988887776655
No 19
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=46.51 E-value=47 Score=20.12 Aligned_cols=53 Identities=30% Similarity=0.475 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 55 QELNMEELMRLEKSLEGGLSRVVQ--TKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (140)
Q Consensus 55 ~~Lsl~EL~~LE~qLe~aL~~IR~--rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~ 107 (140)
+..++.|-..+-+-|-.|=.+|-. +=+.-+.+++..++++...|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 346788887777666665555421 11223446777788899999999988863
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=45.38 E-value=89 Score=23.03 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=15.6
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHhc
Q 032477 22 SLQLQLESSTYAILSKEMADRTRELR 47 (140)
Q Consensus 22 ~~~~~~~~~e~~~L~~e~e~L~~~~R 47 (140)
...+.+|+..+...+.+...++...-
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~ 34 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELV 34 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777766666666666664443
No 21
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=42.39 E-value=54 Score=21.96 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 53 ELQELNMEELMRLEKSLEGGLSRVVQTKGERL 84 (140)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll 84 (140)
++++||.++|+.+=+.|...+..+=+-|..+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 89999999999999999999988877776653
No 22
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.47 E-value=41 Score=18.02 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 032477 89 DALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
..|..|+..|..+|..|...+.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH
Confidence 4455555555566655555543
No 23
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.37 E-value=75 Score=20.44 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 032477 90 ALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 90 ~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.|+.++..|..|...|+.-+..
T Consensus 54 ~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 54 RLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443
No 24
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=38.07 E-value=36 Score=18.12 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032477 90 ALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 90 ~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
.|..|+..|..+|..|...+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 455566666666666665554
No 25
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.69 E-value=54 Score=18.29 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 032477 55 QELNMEELMRLEKSLEGGLSRV 76 (140)
Q Consensus 55 ~~Lsl~EL~~LE~qLe~aL~~I 76 (140)
+++|.+||--||..|+.--.++
T Consensus 15 egfspeelaaleselqalekkl 36 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4699999999998876543333
No 26
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.51 E-value=76 Score=19.96 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
|..+-|.++.+. ...+..+...|..+|..|..+|..
T Consensus 26 AakrSR~krk~r----~~e~~~r~~~L~~eN~~L~~~v~~ 61 (78)
T 1gu4_A 26 AVRKSRDKAKMR----NLETQHKVLELTAENERLQKKVEQ 61 (78)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445444332 244556666677777777666654
No 27
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=36.52 E-value=1.2e+02 Score=21.77 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (140)
Q Consensus 57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k 108 (140)
-|..|...||..-..-..+|+.+|.+| +++...+.=-+.|.+-|..+..+
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e~~ 51 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAEQQ 51 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 378899999999999999998766654 22222222345677777766643
No 28
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=35.24 E-value=87 Score=19.98 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 79 TKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 79 rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.|.+-..+.|.-|+-....|.++|..|.....+
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777766554
No 29
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=33.55 E-value=71 Score=18.47 Aligned_cols=37 Identities=32% Similarity=0.328 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 66 EKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR 104 (140)
Q Consensus 66 E~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~ 104 (140)
|.-|+.+++- | +|.+-+...+...+++.+.|.++|-=
T Consensus 3 ee~LeqWv~~-R-kk~eeler~lrk~kk~iKklEdeNPW 39 (50)
T 1a92_A 3 EDILEQWVSG-R-KKLEELERDLRKLKKKIKKLEEDNPW 39 (50)
T ss_dssp HHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 3445555554 3 33444556677777788878877743
No 30
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.20 E-value=87 Score=19.35 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 69 LEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 69 Le~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
|..|+.-|+ .|..++..|+.+...|..+|..|..++..
T Consensus 42 L~~Ai~YI~-----~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 42 LDKATEYIQ-----YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555543 34455566666777777888888877765
No 31
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.00 E-value=90 Score=19.48 Aligned_cols=45 Identities=22% Similarity=0.112 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 62 LMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 62 L~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+..|+..|+.....||.+-.. |..+.+......++...|+.++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888898888888765433 466666666666666677766654
No 32
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.81 E-value=65 Score=21.38 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 87 EIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 87 ~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
++..++++...|..||..|+..+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555543
No 33
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=31.90 E-value=46 Score=20.13 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=28.9
Q ss_pred CCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 53 ELQELNMEE----LMRLEKSLEGGLSRVVQTKGERLLNEIDALRRK 94 (140)
Q Consensus 53 dL~~Lsl~E----L~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~K 94 (140)
+...++.++ +..|+.++..|.....--+-..+-++|..|+.+
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 444555333 566788888888777777777777777777655
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.40 E-value=1.6e+02 Score=21.96 Aligned_cols=37 Identities=27% Similarity=0.146 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 032477 58 NMEELMRLEKSLEGGLSRVVQTKGERL--LNEIDALRRK 94 (140)
Q Consensus 58 sl~EL~~LE~qLe~aL~~IR~rK~qll--~e~I~~Lk~K 94 (140)
+.+|+..|.+.++.+-.++...-.+++ ++.++.++..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888877777665555443 4455544443
No 35
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=30.23 E-value=90 Score=19.44 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477 86 NEIDALRRKEAQLTEENLRLKQHGLIQ 112 (140)
Q Consensus 86 e~I~~Lk~Ke~~L~eeN~~L~~k~~~~ 112 (140)
+-|..|+..+..|.+++..|...+...
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677888888999999998888764
No 36
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=29.73 E-value=69 Score=17.09 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 032477 89 DALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
..|..|+..|..+|..|...+.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHH
Confidence 3444555555555555554443
No 37
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=29.44 E-value=14 Score=24.11 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=11.2
Q ss_pred ChHHHHHHhhchhc
Q 032477 1 MKQVIDRHNLHSQN 14 (140)
Q Consensus 1 M~~iLeRY~~~~~~ 14 (140)
|..||+||+.++..
T Consensus 61 ~~~il~rY~~~~~~ 74 (90)
T 3p57_A 61 MDKVLLKYTEYNEP 74 (90)
T ss_dssp HHHHHHHHHHCCSC
T ss_pred HHHHHHHHHhcCcc
Confidence 57899999987653
No 38
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=28.80 E-value=1e+02 Score=22.78 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 73 LSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 73 L~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
-+.|..+|.+|+ ..|++|...|.++-..|...+..
T Consensus 10 ~~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 10 TNLIKQKMDELI----KHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888875 77788887777777777666544
No 39
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.98 E-value=1.3e+02 Score=19.21 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 82 ERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 82 qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+.|.++|+.++.....+..+|..|+.-...
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777655443
No 40
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.90 E-value=88 Score=17.07 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032477 86 NEIDALRRKEAQLTEENLRL 105 (140)
Q Consensus 86 e~I~~Lk~Ke~~L~eeN~~L 105 (140)
++|..|+.|...|.+|.-.|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777776554
No 41
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=25.82 E-value=83 Score=16.78 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032477 90 ALRRKEAQLTEENLRLKQHG 109 (140)
Q Consensus 90 ~Lk~Ke~~L~eeN~~L~~k~ 109 (140)
.|..|+..|..+|..|...+
T Consensus 5 QLEdKvEeLl~~~~~L~~EV 24 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHH
Confidence 34444444444444444443
No 42
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.85 E-value=1.4e+02 Score=19.12 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 83 RLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 83 ll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
++..+|..|+++...+..++..|...+..
T Consensus 53 ~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 53 LYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999888888888888766654
No 43
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.65 E-value=1.4e+02 Score=19.02 Aligned_cols=34 Identities=29% Similarity=0.292 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 77 VQTKGERLLNEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 77 R~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
|-+|++=+..+|..|+-|+..+..|......++.
T Consensus 17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLK 50 (81)
T 3qh9_A 17 KQRKAEELLQELRHLKIKVEELENERNQYEWKLK 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466666778888888877777766665555543
No 44
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.23 E-value=1.1e+02 Score=19.36 Aligned_cols=30 Identities=30% Similarity=0.312 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 82 ERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 82 qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+.+..+|+.++.....|.++|..|..-..+
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777778887777554443
No 45
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.84 E-value=1.2e+02 Score=19.46 Aligned_cols=30 Identities=30% Similarity=0.312 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 82 ERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 82 qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+.|.+.|+.++.....|.++|..|+.-...
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777888888877654443
No 46
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.63 E-value=1e+02 Score=17.93 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=7.6
Q ss_pred CCCCCHHHHHH
Q 032477 54 LQELNMEELMR 64 (140)
Q Consensus 54 L~~Lsl~EL~~ 64 (140)
|..+|++||++
T Consensus 7 Lk~ls~eEL~~ 17 (51)
T 2jo8_A 7 LKSWTVEDLQK 17 (51)
T ss_dssp GGGSCHHHHHH
T ss_pred HHhCCHHHHHH
Confidence 44568888865
No 47
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=23.50 E-value=92 Score=16.48 Aligned_cols=20 Identities=5% Similarity=0.019 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032477 90 ALRRKEAQLTEENLRLKQHG 109 (140)
Q Consensus 90 ~Lk~Ke~~L~eeN~~L~~k~ 109 (140)
.|..|+..|..+|..|...+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 34444444555555554444
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.38 E-value=3.1e+02 Score=22.48 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 87 EIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 87 ~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
.++..+++...+.+++..+..++.+
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666555554
No 49
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.97 E-value=1.9e+02 Score=19.91 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032477 87 EIDALRRKEAQLTEENLRLKQHG 109 (140)
Q Consensus 87 ~I~~Lk~Ke~~L~eeN~~L~~k~ 109 (140)
++..++++...|+.++..|...+
T Consensus 111 e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 50
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.83 E-value=1.8e+02 Score=23.92 Aligned_cols=45 Identities=4% Similarity=0.037 Sum_probs=21.4
Q ss_pred hHHHHHHhhchhccccCCCChhHHhhhHHHHHHHHHHHHHHHHHhccCccc
Q 032477 2 KQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGE 52 (140)
Q Consensus 2 ~~iLeRY~~~~~~~~~~~~~~~~~~~~~~e~~~L~~e~e~L~~~~R~l~GE 52 (140)
+.+|.+|++..... -..++....+++.+...+..|.+.+.....+
T Consensus 26 ~d~L~k~e~~V~~~------l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 26 ADFFNKYRLTTDGE------LLEIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45677776644321 1122333345555555555555444444333
No 51
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.83 E-value=1.3e+02 Score=17.84 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477 81 GERLLNEIDALRRKEAQLTEENLRLKQHGL 110 (140)
Q Consensus 81 ~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~ 110 (140)
.+-+..+...|+.+...|..|+..|..-+.
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777777777777777766543
No 52
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.32 E-value=1.8e+02 Score=19.33 Aligned_cols=61 Identities=26% Similarity=0.237 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 27 LESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLK 106 (140)
Q Consensus 27 ~~~~e~~~L~~e~e~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~ 106 (140)
...+|+..|.+..+.++...+.+ +.+.... ..+.+-+..+|+.|+.....|..+|...+
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rl-------------r~~~~~~--------~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRL-------------RLESKRL--------DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHhccc--------hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567777887777776554332 1221111 34556678899999999999999999887
Q ss_pred HH
Q 032477 107 QH 108 (140)
Q Consensus 107 ~k 108 (140)
+.
T Consensus 93 ~~ 94 (104)
T 3s9g_A 93 QQ 94 (104)
T ss_dssp HC
T ss_pred cc
Confidence 65
No 53
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.17 E-value=1.7e+02 Score=18.69 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
|..+-|.++.+. ...+..+...|..+|..|+.+|..
T Consensus 26 AarrSR~krk~r----~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 26 AVRKSRDKAKMR----NLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444545444332 245566777788888888877765
No 54
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=20.77 E-value=1.2e+02 Score=22.32 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032477 86 NEIDALRRKEAQLTEENLRLKQH 108 (140)
Q Consensus 86 e~I~~Lk~Ke~~L~eeN~~L~~k 108 (140)
..|..|+.+...|++||..|...
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899988999999988654
No 55
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=20.02 E-value=1.5e+02 Score=17.53 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 84 LLNEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 84 l~e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+.+.+-.|+..+..|..+|+.+.+-+.+
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777788777766655
Done!