Query 032477
Match_columns 140
No_of_seqs 115 out of 1037
Neff 6.8
Searched_HMMs 13730
Date Tue Mar 26 00:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032477.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032477hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oa5a1 d.362.1.1 (A:7-102) Un 57.5 5.6 0.00041 24.9 3.6 26 88-113 4-29 (96)
2 d2azea1 e.63.1.1 (A:199-346) T 46.4 32 0.0024 22.8 6.4 46 60-107 2-47 (148)
3 d1e52a_ a.2.9.1 (A:) C-termina 36.9 13 0.00092 20.8 2.6 33 62-94 19-51 (56)
4 d1uklc_ a.38.1.1 (C:) SREBP-2 30.1 40 0.0029 18.3 4.3 26 86-111 33-58 (61)
5 d1t27a_ d.129.3.4 (A:) Phoshat 27.0 29 0.0021 25.3 3.8 43 36-78 215-259 (269)
6 d1r8ea1 a.6.1.3 (A:3-120) Tran 22.3 77 0.0056 18.9 6.4 9 57-65 62-70 (118)
7 d3d19a2 a.29.13.1 (A:145-274) 20.5 98 0.0071 19.4 7.9 59 30-88 38-96 (130)
8 d1j55a_ a.39.1.2 (A:) Calcycli 19.2 45 0.0033 20.0 3.0 51 1-63 8-58 (94)
9 d1siga_ a.177.1.1 (A:) Sigma70 18.6 43 0.0031 23.8 3.3 76 34-111 220-306 (334)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 18.2 83 0.006 17.6 6.1 21 89-109 57-77 (79)
No 1
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=57.47 E-value=5.6 Score=24.91 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032477 88 IDALRRKEAQLTEENLRLKQHGLIQM 113 (140)
Q Consensus 88 I~~Lk~Ke~~L~eeN~~L~~k~~~~~ 113 (140)
++.|..+...|+-||+.|++++...+
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~~~ 29 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKSSG 29 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46778888889999999999998754
No 2
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.42 E-value=32 Score=22.80 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 60 EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (140)
Q Consensus 60 ~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~ 107 (140)
.|.+.||........+|+.++.+| .++-.-..=-+.|.+-|+.+..
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~L--qeLi~Q~iafknLV~RN~~~e~ 47 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAEQ 47 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Confidence 467889999999999997777654 2222222223556666765544
No 3
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=36.90 E-value=13 Score=20.76 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 62 LMRLEKSLEGGLSRVVQTKGERLLNEIDALRRK 94 (140)
Q Consensus 62 L~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~K 94 (140)
+..||+++..|.....--|--.+-++|..|++.
T Consensus 19 i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~ 51 (56)
T d1e52a_ 19 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 51 (56)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 677888888888887777777777888777765
No 4
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.09 E-value=40 Score=18.35 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477 86 NEIDALRRKEAQLTEENLRLKQHGLI 111 (140)
Q Consensus 86 e~I~~Lk~Ke~~L~eeN~~L~~k~~~ 111 (140)
+-|..|++++..|.+++..|+.....
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888899998888776543
No 5
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.96 E-value=29 Score=25.27 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccCcc--cCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 032477 36 SKEMADRTRELRQMKG--EELQELNMEELMRLEKSLEGGLSRVVQ 78 (140)
Q Consensus 36 ~~e~e~L~~~~R~l~G--EdL~~Lsl~EL~~LE~qLe~aL~~IR~ 78 (140)
+..-..+-..+|++.. ++=-+||++|+..+|.+....|.++|.
T Consensus 215 ~~~r~~~l~~HRq~fcW~DeW~gmTmedIR~~E~e~q~~L~~~~~ 259 (269)
T d1t27a_ 215 KQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQ 259 (269)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3334556667787665 455679999999999999999999875
No 6
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=22.28 E-value=77 Score=18.94 Aligned_cols=9 Identities=22% Similarity=0.397 Sum_probs=4.9
Q ss_pred CCHHHHHHH
Q 032477 57 LNMEELMRL 65 (140)
Q Consensus 57 Lsl~EL~~L 65 (140)
+|+++...+
T Consensus 62 ~sl~eIk~~ 70 (118)
T d1r8ea1 62 TPLEEMKKA 70 (118)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 566655443
No 7
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=20.50 E-value=98 Score=19.42 Aligned_cols=59 Identities=8% Similarity=-0.068 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477 30 STYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEI 88 (140)
Q Consensus 30 ~e~~~L~~e~e~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I 88 (140)
.+.....+..+.|-..-+.+.|--....+++.+..+-++...++..+|.=|.+++...+
T Consensus 38 ~~A~~f~~~Fe~Ll~~a~~l~~~~~~~~~~~~l~~ln~~~~~~~~~~~~FK~~~~~~~l 96 (130)
T d3d19a2 38 DTARNFSNDFDELMYQAIDLESMKPQSQTAPLLDQFLDQNRVSVASLRDFKKTARDLIE 96 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666667777777889999999999999999999999988765433
No 8
>d1j55a_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100p [TaxId: 9606]}
Probab=19.24 E-value=45 Score=19.98 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=24.3
Q ss_pred ChHHHHHHhhchhccccCCCChhHHhhhHHHHHHHHHHHHHHHHHhccCcccCCCCCCHHHHH
Q 032477 1 MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELM 63 (140)
Q Consensus 1 M~~iLeRY~~~~~~~~~~~~~~~~~~~~~~e~~~L~~e~e~L~~~~R~l~GEdL~~Lsl~EL~ 63 (140)
|..||+=|++|++..+..+.. .+.|+. +.++.+...+++..-+.-+++++.
T Consensus 8 i~~ii~vFhkYa~~~g~~~tL------sk~Elk------~Ll~~El~~~l~~~~d~~~vd~~m 58 (94)
T d1j55a_ 8 MGMIIDVFSRYSGSEGSTQTL------TKGELK------VLMEKELPGFLQSGKDKDAVDKLL 58 (94)
T ss_dssp HHHHHHHHHHHTTSSSCTTEE------CHHHHH------HHHHHHSTTCC------CHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcccC------CHHHHH------HHHHHHHHHHhcCCCCHHHHHHHH
Confidence 356788888887655544332 223332 445555666665544444554443
No 9
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Probab=18.58 E-value=43 Score=23.76 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--------HHHHHHHH
Q 032477 34 ILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRR---K--------EAQLTEEN 102 (140)
Q Consensus 34 ~L~~e~e~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~---K--------e~~L~eeN 102 (140)
..+..+...+..++.+ ++-.++++.++..+-..+..+-...+..|.+++...+.-... + .-.+++-|
T Consensus 220 ~~~~~I~~~q~kl~~i--e~~~gl~~~elk~i~~~i~~ge~~~~~ak~~~~~~~~~lv~~~~~~~~~~~~~~~dl~~~~~ 297 (334)
T d1siga_ 220 DVSEEVHRALQKLQQI--EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 297 (334)
T ss_dssp GTHHHHHHHHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHhhccchHHHHHHhHHHHHHHHHHhccCCCCCHHHHHHhhH
Confidence 3344444444444433 344458999999999999999999999999988655432222 1 23355666
Q ss_pred HHHHHHHhh
Q 032477 103 LRLKQHGLI 111 (140)
Q Consensus 103 ~~L~~k~~~ 111 (140)
-.|-+.+..
T Consensus 298 ~~l~~~~~~ 306 (334)
T d1siga_ 298 IGLMKAVDK 306 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666555554
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.15 E-value=83 Score=17.63 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032477 89 DALRRKEAQLTEENLRLKQHG 109 (140)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~k~ 109 (140)
..+......|..++..|..++
T Consensus 57 ~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 57 RKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555554
Done!