Query 032478
Match_columns 140
No_of_seqs 142 out of 332
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 00:05:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u28_C H/ACA ribonucleoprotein 100.0 3.2E-48 1.1E-52 286.4 9.0 97 41-137 18-114 (114)
2 2ey4_C Small nucleolar RNP sim 100.0 1.9E-29 6.5E-34 176.7 5.9 76 47-126 5-81 (82)
3 2hvy_B GAR1, small nucleolar R 99.9 5.2E-28 1.8E-32 176.2 8.2 76 47-128 5-83 (104)
4 2eqn_A Hypothetical protein LO 99.9 1.1E-25 3.8E-30 163.1 7.0 80 46-125 20-103 (103)
5 2v3m_A NAF1; ribosomal protein 99.9 9.9E-25 3.4E-29 164.2 7.2 82 46-127 26-114 (131)
6 4df3_A Fibrillarin-like rRNA/T 98.4 6.2E-08 2.1E-12 77.7 1.6 63 56-125 8-85 (233)
7 3id6_C Fibrillarin-like rRNA/T 96.5 0.00061 2.1E-08 54.1 0.9 59 57-122 9-80 (232)
8 2ipx_A RRNA 2'-O-methyltransfe 89.0 0.079 2.7E-06 39.8 0.1 45 48-98 3-58 (233)
9 1fbn_A MJ fibrillarin homologu 82.7 0.85 2.9E-05 34.2 3.0 40 57-98 7-55 (230)
10 1nt2_A Fibrillarin-like PRE-rR 71.8 0.6 2E-05 35.2 -0.7 34 57-97 2-38 (210)
11 3h9n_A Ribosome maturation fac 56.7 21 0.00071 26.7 5.4 33 76-108 101-133 (177)
12 2f1l_A 16S rRNA processing pro 51.6 19 0.00066 27.3 4.5 34 76-109 119-152 (187)
13 1pm3_A MTH1895; unknown functi 42.6 33 0.0011 23.2 4.2 23 76-98 28-51 (97)
14 3htr_A Uncharacterized PRC-bar 37.6 20 0.00067 25.2 2.4 32 76-107 21-55 (120)
15 1eys_H Photosynthetic reaction 36.6 19 0.00065 29.3 2.4 32 77-108 153-187 (259)
16 2dyi_A Probable 16S rRNA-proce 35.6 34 0.0012 25.2 3.6 34 76-110 95-128 (162)
17 1rzh_H Reaction center protein 33.7 57 0.0019 26.6 4.8 47 57-107 134-183 (260)
18 2a7y_A Hypothetical protein RV 32.8 75 0.0026 21.7 4.6 47 54-111 1-49 (83)
19 3l48_A Outer membrane usher pr 32.4 46 0.0016 22.5 3.5 23 71-93 19-41 (94)
20 2qgg_A 16S rRNA-processing pro 32.3 49 0.0017 24.8 4.0 31 76-107 110-145 (182)
21 2dgy_A MGC11102 protein; EIF-1 29.9 72 0.0024 22.5 4.3 30 80-112 10-39 (111)
22 2wjn_H Reaction center protein 25.9 37 0.0013 27.7 2.4 32 77-108 154-188 (258)
23 2hc8_A PACS, cation-transporti 25.5 39 0.0013 23.3 2.3 23 111-133 25-47 (113)
24 2xet_A CAF1A usher, F1 capsule 24.5 56 0.0019 21.3 2.8 22 72-93 14-36 (89)
25 3i4o_A Translation initiation 23.2 1.3E+02 0.0043 20.0 4.4 34 89-125 18-63 (79)
26 2f1l_A 16S rRNA processing pro 23.0 1.5E+02 0.0052 22.2 5.3 86 45-132 15-108 (187)
27 3mlq_E Transcription-repair co 22.2 84 0.0029 20.2 3.2 30 98-136 30-59 (71)
28 2kij_A Copper-transporting ATP 22.0 52 0.0018 23.0 2.3 23 111-133 37-59 (124)
29 1wb1_A Translation elongation 20.8 33 0.0011 29.1 1.3 66 54-127 409-478 (482)
No 1
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=100.00 E-value=3.2e-48 Score=286.41 Aligned_cols=97 Identities=61% Similarity=1.090 Sum_probs=91.2
Q ss_pred CCCCCCCceEEEceeeeeccCCeEEEeccCCCCCCCCCceeeccceeeeeeeeeeCCCCcccEEEEecCCcccCCCCCCC
Q 032478 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGD 120 (140)
Q Consensus 41 ~~~~Gpp~~v~~lG~f~H~~eg~lV~k~t~~~VPyfna~Vy~enK~~IGKVdeIfGPi~~~yfsvKl~~gi~a~sfk~gd 120 (140)
++|+|||++|++||+|+|+||++||||+|+++||||||+||+|||++||||||||||+|++|||||++++|+|+||+++|
T Consensus 18 ~~~~gpp~~v~elG~f~H~ceg~lV~k~~~~~VP~fNapVy~enK~~IGKVdEIFGPin~~YfsVK~~~gv~a~Sfk~gd 97 (114)
T 3u28_C 18 GSHMGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSFKEGD 97 (114)
T ss_dssp -----CCSCEEEEEEEEEEETTEEEEEECSSSEECTTCEEECTTCCEEEEEEEEESBTTSCEEEEEECTTCCGGGCCTTC
T ss_pred CCCCCCCHHHheeeeEEEEeCCeEEEEeCCCCCCCCCCEeEccCCccceeEeEEeCCCCccEEEEEecCCCcccccccCC
Confidence 46999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcccccCCCC
Q 032478 121 KFYIDPSKLLPLARFLP 137 (140)
Q Consensus 121 k~yI~p~kllPl~rFlp 137 (140)
+|||+++|||||+||||
T Consensus 98 k~YId~~kllPl~rFlp 114 (114)
T 3u28_C 98 KFYIAADKLLPIERFLP 114 (114)
T ss_dssp EEEEEGGGEECGGGGCC
T ss_pred EEEECccccCcHHhcCC
Confidence 99999999999999997
No 2
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=99.95 E-value=1.9e-29 Score=176.72 Aligned_cols=76 Identities=21% Similarity=0.450 Sum_probs=68.8
Q ss_pred CceEEEceeeeecc-CCeEEEeccCCCCCCCCCceeeccceeeeeeeeeeCCCCcccEEEEecCCcccCCCCCCCEEEec
Q 032478 47 PAEVVEVSSFLHAC-EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYID 125 (140)
Q Consensus 47 p~~v~~lG~f~H~~-eg~lV~k~t~~~VPyfna~Vy~enK~~IGKVdeIfGPi~~~yfsvKl~~gi~a~sfk~gdk~yI~ 125 (140)
-++|++||+|+|.| +++||||++ ++||||++||+||+++||||||||||++++||+||+++ ..++|| +||+|||+
T Consensus 5 ~~~mk~lG~~~h~~~~g~lV~k~~--~~P~~na~Vy~e~~~~IGkV~dIfGPv~~pY~sVk~~~-~~~~s~-~g~klYi~ 80 (82)
T 2ey4_C 5 GEKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKV-SNPEIY-VGEVLYVD 80 (82)
T ss_dssp ---CBCCCCEEEEETTTEEEEECS--SCCCTTCEEECTTCCCCEEEEEEEEESSSCEEEEEECS-SSCSTT-BTCCCEEC
T ss_pred cceeEEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEeCC-CChhhc-CCCeEEec
Confidence 47899999999999 999999984 79999999999999999999999999999999999998 567888 99999999
Q ss_pred C
Q 032478 126 P 126 (140)
Q Consensus 126 p 126 (140)
|
T Consensus 81 ~ 81 (82)
T 2ey4_C 81 E 81 (82)
T ss_dssp -
T ss_pred C
Confidence 8
No 3
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=99.95 E-value=5.2e-28 Score=176.16 Aligned_cols=76 Identities=21% Similarity=0.446 Sum_probs=66.9
Q ss_pred CceEEEceeeeecc-CCeEEEeccCCCCCCCCCceeeccceeeeeeeeeeCCCCcccEEEEecCCcccCCCC--CCCEEE
Q 032478 47 PAEVVEVSSFLHAC-EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYS--LGDKFY 123 (140)
Q Consensus 47 p~~v~~lG~f~H~~-eg~lV~k~t~~~VPyfna~Vy~enK~~IGKVdeIfGPi~~~yfsvKl~~gi~a~sfk--~gdk~y 123 (140)
-++|++||+|+|.| +++|||+++ ++||||++||+||+++||||||||||++++||+||+++. +|+ +||+||
T Consensus 5 ~~~mk~lG~~~H~~~~g~lVvk~~--~vP~~na~Vy~enk~~IGKV~DIfGPV~~pY~sVKp~~~----s~~~~~G~klY 78 (104)
T 2hvy_B 5 GEKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVS----NPEIYVGEVLY 78 (104)
T ss_dssp ---CEEEEEEEEEETTTEEEEECS--SCCCTTCEEECTTCCEEEEEEEEEEESSSCEEEEEECSS----CGGGGTTCEEE
T ss_pred cceeeEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEecCC----CccccCCCEEE
Confidence 47899999999999 999999984 799999999999999999999999999999999999972 455 899999
Q ss_pred ecCCC
Q 032478 124 IDPSK 128 (140)
Q Consensus 124 I~p~k 128 (140)
|++.+
T Consensus 79 I~~~~ 83 (104)
T 2hvy_B 79 VDERK 83 (104)
T ss_dssp ECC--
T ss_pred EcCcc
Confidence 99754
No 4
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=163.11 Aligned_cols=80 Identities=16% Similarity=0.340 Sum_probs=74.2
Q ss_pred CCc-eEEEceeeeeccCCeEEEeccCC-CCCCCCCceeeccceeeeeeeeeeCCCCcccEEEEec--CCcccCCCCCCCE
Q 032478 46 PPA-EVVEVSSFLHACEGDAVTKLTNE-KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMM--EGIVATSYSLGDK 121 (140)
Q Consensus 46 pp~-~v~~lG~f~H~~eg~lV~k~t~~-~VPyfna~Vy~enK~~IGKVdeIfGPi~~~yfsvKl~--~gi~a~sfk~gdk 121 (140)
||+ ++++||+++|.|++.+|||++.+ .+|++|+.||+|||++||||||||||++++||+||+. +++.+.+|+.|++
T Consensus 20 ~~~~~v~~lG~v~~~~e~~vvik~~~~~~vl~~~s~l~~edk~~IGkV~EiFGpV~~PyysVk~~~~~~i~a~~~~~G~k 99 (103)
T 2eqn_A 20 PEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKET 99 (103)
T ss_dssp CTTSCCEEEEEEEEECSSSEEEEECSSCCCCCTTCEEECTTSBEEEEEEEEESCSSSCEEEECCSSHHHHHHHTCCTTCE
T ss_pred CCCCeeEEeEEEEEEcCCeEEEEeCCCCcCCcCCCEEEecCCcEEEEEEEEECCCCCCEEEEEeCcccccccccccCCCE
Confidence 455 78999999999999999999865 5999999999999999999999999999999999995 4889999999999
Q ss_pred EEec
Q 032478 122 FYID 125 (140)
Q Consensus 122 ~yI~ 125 (140)
|||+
T Consensus 100 vY~~ 103 (103)
T 2eqn_A 100 MYFA 103 (103)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 5
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.9e-25 Score=164.17 Aligned_cols=82 Identities=20% Similarity=0.382 Sum_probs=74.2
Q ss_pred CCceEEEceeeeeccCCeEEEeccC---CCCCCCCCceeeccceeeeeeeeeeCCCCcccEEEEec----CCcccCCCCC
Q 032478 46 PPAEVVEVSSFLHACEGDAVTKLTN---EKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMM----EGIVATSYSL 118 (140)
Q Consensus 46 pp~~v~~lG~f~H~~eg~lV~k~t~---~~VPyfna~Vy~enK~~IGKVdeIfGPi~~~yfsvKl~----~gi~a~sfk~ 118 (140)
|-+++++||+|+|.|++++||+++. .++|++|++||+|||++||||||||||++++||+||+. +++.+.++++
T Consensus 26 ~~~~v~~lG~i~~ive~~vVik~~~~g~~~vl~~~s~l~ledr~~IGkV~EiFGpV~~P~ysVk~~~~~~e~i~~~~~~~ 105 (131)
T 2v3m_A 26 EKTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCLEDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRL 105 (131)
T ss_dssp TTSCEEEEEEEEEEETTEEEEEEC-----CCCCTTCEEEETTCCEEEECCEEESCSSSCEEEEECCGGGHHHHHHHHTTT
T ss_pred CCCEEEEeeeEEEEeCCcEEEEecCCCCccccCCCCEEEecCCcEEEEEEEEeCCCCCcEEEEEeCCcchhhhhhcccCC
Confidence 3357999999999999999999975 37999999999999999999999999999999999998 4588999999
Q ss_pred CCEEEecCC
Q 032478 119 GDKFYIDPS 127 (140)
Q Consensus 119 gdk~yI~p~ 127 (140)
|++|||++.
T Consensus 106 G~kvY~~~~ 114 (131)
T 2v3m_A 106 GEKAFIVTP 114 (131)
T ss_dssp TSEEEEEC-
T ss_pred CCEEEECcC
Confidence 999999985
No 6
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=98.40 E-value=6.2e-08 Score=77.69 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=52.1
Q ss_pred eee-ccCCeEEEec--------cCCCCCCCCCceeeccceeeeeeee-eeCCCCcccEEEEecCCcccC----CCCCCCE
Q 032478 56 FLH-ACEGDAVTKL--------TNEKIPYFNAPIYLQNKTQIGKVDE-IFGPINESYFSVKMMEGIVAT----SYSLGDK 121 (140)
Q Consensus 56 f~H-~~eg~lV~k~--------t~~~VPyfna~Vy~enK~~IGKVde-IfGPi~~~yfsvKl~~gi~a~----sfk~gdk 121 (140)
.+| .++|.++++. |.|.+| +.+||+|+..++..+++ +|+| |++||+++|..+ .+++|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~l~t~n~~~--g~~vyge~~~~~~~~e~r~w~p-----~rsklaa~i~~gl~~l~ikpG~~ 80 (233)
T 4df3_A 8 SRHDRWRGVYVVELEDGSLRIATKNLVP--GQRVYGERIFRYNGEEYREWNA-----YRSKLAAALLKGLIELPVKEGDR 80 (233)
T ss_dssp EECSSSTTEEEEEETTSCEEEEEECSST--TCCSSSCCEEEETTEEEEECCT-----TTCHHHHHHHTTCSCCCCCTTCE
T ss_pred eEecccCCEEEEEccCCceeEEEecCCC--CCcccCceEEEcCCceeeeECC-----CchHHHHHHHhchhhcCCCCCCE
Confidence 378 7899999983 789999 99999999999988776 9999 999999877643 5678886
Q ss_pred E-Eec
Q 032478 122 F-YID 125 (140)
Q Consensus 122 ~-yI~ 125 (140)
+ |+.
T Consensus 81 VldlG 85 (233)
T 4df3_A 81 ILYLG 85 (233)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 4 443
No 7
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=96.50 E-value=0.00061 Score=54.06 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=47.3
Q ss_pred eeccCCeEEEec--------cCCCCCCCCCceeeccceeeeeeee-eeCCCCcccEEEEecCCccc----CCCCCCCEE
Q 032478 57 LHACEGDAVTKL--------TNEKIPYFNAPIYLQNKTQIGKVDE-IFGPINESYFSVKMMEGIVA----TSYSLGDKF 122 (140)
Q Consensus 57 ~H~~eg~lV~k~--------t~~~VPyfna~Vy~enK~~IGKVde-IfGPi~~~yfsvKl~~gi~a----~sfk~gdk~ 122 (140)
.|.++|+++++. |+|++| +..||.|+...+...++ .|+| |.+|+++.+.. -.+++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~t~~~~p--g~~vy~e~~~~~~~~~yr~w~~-----~~skla~~ll~~l~~~~l~~g~~V 80 (232)
T 3id6_C 9 QTNMENIYECEFNDGSFRLCTRNLVP--NFNVYGERLIKYEGVEYREWNA-----FRSKLAGAILKGLKTNPIRKGTKV 80 (232)
T ss_dssp ECSSTTEEEEECTTSCEEEEEECSST--TCCSSSCCEEEETTEEEEECCT-----TTCHHHHHHHTTCSCCSCCTTCEE
T ss_pred eeccCcEEEEEccCCcceEEEecccC--CCCcccceeeeecCcchhhhch-----HHHHHHHHHHhhhhhcCCCCCCEE
Confidence 678999999982 889999 99999999998876654 9999 88898776543 246777764
No 8
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=89.03 E-value=0.079 Score=39.85 Aligned_cols=45 Identities=24% Similarity=0.461 Sum_probs=33.4
Q ss_pred ceEEEceeeeeccCCeEEEec------cCCCCCCCCCceeeccceeee----eeee-eeCCC
Q 032478 48 AEVVEVSSFLHACEGDAVTKL------TNEKIPYFNAPIYLQNKTQIG----KVDE-IFGPI 98 (140)
Q Consensus 48 ~~v~~lG~f~H~~eg~lV~k~------t~~~VPyfna~Vy~enK~~IG----KVde-IfGPi 98 (140)
+.+++ +|.+++.++++. |.|..| +..||.|+...+. .+++ +|+|.
T Consensus 3 ~~~~~----~~~~~g~~~~~~~~~~~~~~n~~~--~~~vy~e~~~~~~~~~~~~~~~~~~~~ 58 (233)
T 2ipx_A 3 NVMVE----PHRHEGVFICRGKEDALVTKNLVP--GESVYGEKRVSISEGDDKIEYRAWNPF 58 (233)
T ss_dssp --CCE----ECSSTTEEECC-----CEEECSST--TCCSSSCCEEEEC----CEEEEECCTT
T ss_pred ceEEe----ecccCceEEEecCCceEEEEecCC--CcccccceEEEecCCCCceEEEEeccc
Confidence 44566 899999999983 456777 9999999988775 5554 78883
No 9
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=82.69 E-value=0.85 Score=34.16 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=31.6
Q ss_pred eeccCCeEEEec--------cCCCCCCCCCceeeccceeeeeeee-eeCCC
Q 032478 57 LHACEGDAVTKL--------TNEKIPYFNAPIYLQNKTQIGKVDE-IFGPI 98 (140)
Q Consensus 57 ~H~~eg~lV~k~--------t~~~VPyfna~Vy~enK~~IGKVde-IfGPi 98 (140)
.|.+++.++++. |.|..| +..||+|+...+...++ +|+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vyge~~~~~~~~~~~~~~~~ 55 (230)
T 1fbn_A 7 KEIFENIYEVDLGDGLKRIATKSIVK--GKKVYDEKIIKIGDEEYRIWNPN 55 (230)
T ss_dssp EEETTTEEEEECSSSCCCEEEECSST--TCCSSSCCEEEETTEEEEECCTT
T ss_pred ccccCcEEEEecCCCceeeeEEccCC--CCCccCceEEeeccceeeeeCcc
Confidence 489999999983 445666 99999999988876665 88883
No 10
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=71.79 E-value=0.6 Score=35.18 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=25.9
Q ss_pred eeccCCeEEEe---ccCCCCCCCCCceeeccceeeeeeeeeeCC
Q 032478 57 LHACEGDAVTK---LTNEKIPYFNAPIYLQNKTQIGKVDEIFGP 97 (140)
Q Consensus 57 ~H~~eg~lV~k---~t~~~VPyfna~Vy~enK~~IGKVdeIfGP 97 (140)
.|.++++++++ +|.+++| .||+|+-. .-.+.|.|
T Consensus 2 ~~~~~~~~~~~~~~~t~~~~~----~~Y~~~~~---~~y~~~~~ 38 (210)
T 1nt2_A 2 KELMRNVYLLDDTLVTKSKYG----SHYGEKVF---DGYREWVP 38 (210)
T ss_dssp CEEETTEEEETTEEEEECSCC----CSSSCCEE---TTEEECCG
T ss_pred CcccCcEEEEeeeEeeccCCc----cccchhhh---hhhhhcCh
Confidence 68889999997 3778888 89998766 22447877
No 11
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=56.66 E-value=21 Score=26.75 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=25.8
Q ss_pred CCCceeeccceeeeeeeeeeCCCCcccEEEEec
Q 032478 76 FNAPIYLQNKTQIGKVDEIFGPINESYFSVKMM 108 (140)
Q Consensus 76 fna~Vy~enK~~IGKVdeIfGPi~~~yfsvKl~ 108 (140)
++..||+++-..+|+|.+|+-.-.+-.+.||..
T Consensus 101 iGl~V~~~~g~~lG~V~~v~~~gandvl~V~~~ 133 (177)
T 3h9n_A 101 IGCTVVNLEGYTMGTVTEMMETGSNDVLVVKAN 133 (177)
T ss_dssp TTCEEEETTCCEEEEEEEEEESSSCEEEEEECC
T ss_pred cCCEEEeCCCCEEEEEEEEeeCCCcEEEEEEec
Confidence 578899999999999999886544444788864
No 12
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=51.64 E-value=19 Score=27.34 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=26.5
Q ss_pred CCCceeeccceeeeeeeeeeCCCCcccEEEEecC
Q 032478 76 FNAPIYLQNKTQIGKVDEIFGPINESYFSVKMME 109 (140)
Q Consensus 76 fna~Vy~enK~~IGKVdeIfGPi~~~yfsvKl~~ 109 (140)
++..||+++-..+|+|.+|+..-.+-.+.||..+
T Consensus 119 IGl~V~~~~g~~lG~V~~v~~~ganDvlvV~~~~ 152 (187)
T 2f1l_A 119 EGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCA 152 (187)
T ss_dssp TTCEEEETTSCEEEEEEEEECCSSSCEEEEECCT
T ss_pred CCeEEEeCCCCEEEEEEEEccCCCcEEEEEEeCC
Confidence 4889999988999999999876544447788654
No 13
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=42.65 E-value=33 Score=23.21 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.2
Q ss_pred CCCceeeccceeeeeeee-eeCCC
Q 032478 76 FNAPIYLQNKTQIGKVDE-IFGPI 98 (140)
Q Consensus 76 fna~Vy~enK~~IGKVde-IfGPi 98 (140)
.+..||+++-.++|+|++ ++.+.
T Consensus 28 ~Gk~Vin~dG~~LG~V~Dv~iD~~ 51 (97)
T 1pm3_A 28 VGKEVLDSSAKVIGKVKDVEVDIE 51 (97)
T ss_dssp SSCEEECTTSCEEEEEEEEEEETT
T ss_pred CCCEeECCCCCEEeEEEEEEEECC
Confidence 389999999999999998 45553
No 14
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=37.62 E-value=20 Score=25.23 Aligned_cols=32 Identities=13% Similarity=0.403 Sum_probs=22.9
Q ss_pred CCCceeeccceeeeeeeeee-CCC-Ccc-cEEEEe
Q 032478 76 FNAPIYLQNKTQIGKVDEIF-GPI-NES-YFSVKM 107 (140)
Q Consensus 76 fna~Vy~enK~~IGKVdeIf-GPi-~~~-yfsvKl 107 (140)
.+..||+.+-.+||+|++|+ ... -.+ |+.|..
T Consensus 21 ~G~~V~~~dG~~iG~V~dv~iD~~~G~i~~~vv~~ 55 (120)
T 3htr_A 21 QGTAVYGPDGEKIGSIERVMIEKVSGRVSYAVLSF 55 (120)
T ss_dssp TTCEEECTTSCEEEEEEEEEEETTTCBEEEEEEEE
T ss_pred cCCEEEcCCCCEEEEEEEEEEECCCCcEEEEEEEC
Confidence 48899999999999999954 432 223 566654
No 15
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=36.62 E-value=19 Score=29.28 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=24.7
Q ss_pred CCceeeccceeeeeeeeeeCCCC--c-ccEEEEec
Q 032478 77 NAPIYLQNKTQIGKVDEIFGPIN--E-SYFSVKMM 108 (140)
Q Consensus 77 na~Vy~enK~~IGKVdeIfGPi~--~-~yfsvKl~ 108 (140)
+..||..+..+||+|++||==.. . -|+.|...
T Consensus 153 G~~Vya~DGekIG~V~Dv~vD~~sG~VrYlVVdtG 187 (259)
T 1eys_H 153 GMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEVEVA 187 (259)
T ss_dssp TCEEECSSSCEEEEEEEEEEETTTTEEEEEEEEET
T ss_pred CCEEEeCCCCeeEEEEEEEEECCCCeEEEEEEEcC
Confidence 89999999999999999763221 1 37888774
No 16
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=35.62 E-value=34 Score=25.20 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=25.8
Q ss_pred CCCceeeccceeeeeeeeeeCCCCcccEEEEecCC
Q 032478 76 FNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEG 110 (140)
Q Consensus 76 fna~Vy~enK~~IGKVdeIfGPi~~~yfsvKl~~g 110 (140)
++..|| ++-..+|+|.+|+..-.+-.+.||..++
T Consensus 95 iGl~V~-~~g~~lG~V~~v~~~ga~dvl~V~~~~g 128 (162)
T 2dyi_A 95 IGLPVY-VEGRQVGEVVDILDAGAQDVLIIRGVGE 128 (162)
T ss_dssp TTCEEE-ETTEEEEEEEEEEEETTEEEEEEEECCS
T ss_pred CCeEEE-ECCeEEEEEEEEccCCCceEEEEEeCCC
Confidence 588999 8888999999988654444467887543
No 17
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=33.66 E-value=57 Score=26.57 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=30.5
Q ss_pred eeccCCeEEEeccCCCCCCCCCceeeccceeeeeeeeeeCCCCc---ccEEEEe
Q 032478 57 LHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINE---SYFSVKM 107 (140)
Q Consensus 57 ~H~~eg~lV~k~t~~~VPyfna~Vy~enK~~IGKVdeIfGPi~~---~yfsvKl 107 (140)
++..++--|.. -.++- +-.||..+..+||+|+++|==..+ -|+-|.+
T Consensus 134 L~~~~df~v~~--~~d~~--G~~Vyg~DGe~iGsV~Dl~VD~~eg~VRYLVVdt 183 (260)
T 1rzh_H 134 MKAAAGFHVSA--GKNPI--GLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVEL 183 (260)
T ss_dssp GGGSTTCEEEE--SCCCT--TCEEEETTSCEEEEEEEEEEETTTTEEEEEEEEC
T ss_pred eeecCCccccC--CCCCC--CCEeEcCCCCeeEEEEEEEEECCCCEEEEEEEEe
Confidence 34444444443 24455 889999999999999998732212 2666666
No 18
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=32.79 E-value=75 Score=21.70 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=32.9
Q ss_pred eeeeeccC-CeEEEeccCCCCCCCCCceeeccceeeeeeeeeeCCCCcccEEEEe-cCCc
Q 032478 54 SSFLHACE-GDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKM-MEGI 111 (140)
Q Consensus 54 G~f~H~~e-g~lV~k~t~~~VPyfna~Vy~enK~~IGKVdeIfGPi~~~yfsvKl-~~gi 111 (140)
|+.||+.- +.||+++.....| .+.|.|-||.++--.+.|.|+- +++-
T Consensus 1 g~~M~A~vGDrlvv~g~~vg~~-----------~R~GeIvEV~g~dG~PPY~VRw~ddGH 49 (83)
T 2a7y_A 1 GSHMHAKVGDYLVVKGTTTERH-----------DQHAEIIEVRSADGSPPYVVRWLVNGH 49 (83)
T ss_dssp ---CCCCTTEEEEESCTTTSCC-----------EEEEEEEECSCSSSCSCEEEEETTTTE
T ss_pred CCccCccCCCEEEEecCcCCCC-----------CcEEEEEEEECCCCCCCEEEEecCCCc
Confidence 56788764 6778877443444 5678999999999999999996 5543
No 19
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=32.41 E-value=46 Score=22.53 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=18.0
Q ss_pred CCCCCCCCceeeccceeeeeeee
Q 032478 71 EKIPYFNAPIYLQNKTQIGKVDE 93 (140)
Q Consensus 71 ~~VPyfna~Vy~enK~~IGKVde 93 (140)
.+.+-|+|.|++++...+|-|.+
T Consensus 19 G~plPfGA~V~d~~g~~~giVG~ 41 (94)
T 3l48_A 19 GSQPPFGASVTSEKGRELGMVAD 41 (94)
T ss_dssp SCCCCTTCEEECTTCCEEEEBCG
T ss_pred CCcCCCccEEEcCCCceEEEECC
Confidence 34455899999998888887775
No 20
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=32.34 E-value=49 Score=24.76 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=24.8
Q ss_pred CCCceeec----cceeeeeeeeeeCCC-CcccEEEEe
Q 032478 76 FNAPIYLQ----NKTQIGKVDEIFGPI-NESYFSVKM 107 (140)
Q Consensus 76 fna~Vy~e----nK~~IGKVdeIfGPi-~~~yfsvKl 107 (140)
++..||++ +...+|+|.+|+-.- |++ +.|+.
T Consensus 110 iGl~V~~~~~~~~g~~lG~V~~v~~~gandv-l~V~~ 145 (182)
T 2qgg_A 110 KGLTVLGLDDEEQEVNLGQIHELFETGANDV-MVVRA 145 (182)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEEEECSSCEE-EEEEC
T ss_pred CCcEEEEcccCCCCcEEEEEEEEccCCCcEE-EEEEe
Confidence 48899998 788999999988654 555 67886
No 21
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.91 E-value=72 Score=22.50 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=18.4
Q ss_pred eeeccceeeeeeeeeeCCCCcccEEEEecCCcc
Q 032478 80 IYLQNKTQIGKVDEIFGPINESYFSVKMMEGIV 112 (140)
Q Consensus 80 Vy~enK~~IGKVdeIfGPi~~~yfsvKl~~gi~ 112 (140)
++.+.-+.+++|.+.++. -.|+|++.++..
T Consensus 10 ~~p~ege~~g~V~~~lgn---~~f~V~l~nG~~ 39 (111)
T 2dgy_A 10 IVPSNQQQIVRVLRTPGN---NLHEVETAQGQR 39 (111)
T ss_dssp CCCCSSCEEEEEEECCSS---SEEEEECTTSCE
T ss_pred cCCCCCeEEEEEEEeCCC---CEEEEEeCCCCE
Confidence 344456667777776663 347777766543
No 22
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=25.88 E-value=37 Score=27.66 Aligned_cols=32 Identities=16% Similarity=0.411 Sum_probs=24.0
Q ss_pred CCceeeccceeeeeeeeeeCCCCc---ccEEEEec
Q 032478 77 NAPIYLQNKTQIGKVDEIFGPINE---SYFSVKMM 108 (140)
Q Consensus 77 na~Vy~enK~~IGKVdeIfGPi~~---~yfsvKl~ 108 (140)
+-.||..+.++||+|+++|==..+ -|+-|.+.
T Consensus 154 G~~Vyg~DGe~iGsV~Dl~VD~~eg~VRYLVVdtG 188 (258)
T 2wjn_H 154 GLPVVAADGVEAGTVTDLWVDRSEHYFRYLELSVA 188 (258)
T ss_dssp TCEEECTTSCEEEEEEEEEEETTTTEEEEEEEEET
T ss_pred CCEeEcCCCCeeEEEEEEEEECCCCEEEEEEEEcC
Confidence 789999999999999998732212 26667664
No 23
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=25.53 E-value=39 Score=23.26 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=19.6
Q ss_pred cccCCCCCCCEEEecCCCccccc
Q 032478 111 IVATSYSLGDKFYIDPSKLLPLA 133 (140)
Q Consensus 111 i~a~sfk~gdk~yI~p~kllPl~ 133 (140)
|.+..+.+||.+.+.+...+|.+
T Consensus 25 i~~~~l~~GDiv~v~~G~~iPaD 47 (113)
T 2hc8_A 25 VPVEEVAVGDIVIVRPGEKIPVD 47 (113)
T ss_dssp EEGGGCCTTCEEEECTTCBCCSE
T ss_pred EEHHHCCCCCEEEECCCCEEeee
Confidence 45678889999999999999876
No 24
>2xet_A CAF1A usher, F1 capsule-anchoring protein; transport protein; 1.60A {Yersinia pestis}
Probab=24.51 E-value=56 Score=21.33 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=16.0
Q ss_pred CCCCCCCce-eeccceeeeeeee
Q 032478 72 KIPYFNAPI-YLQNKTQIGKVDE 93 (140)
Q Consensus 72 ~VPyfna~V-y~enK~~IGKVde 93 (140)
+.+-|++.| ++++...+|-|.+
T Consensus 14 ~~lPfGa~V~~~~~g~~~giVg~ 36 (89)
T 2xet_A 14 KPVPFGSIVTIEGQSSSSGIVGD 36 (89)
T ss_dssp CBCCTTCEEEETTCCSCCEECCT
T ss_pred CcCCCccEEEECCCCCEEEEEcC
Confidence 433499999 9887767877753
No 25
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=23.15 E-value=1.3e+02 Score=19.96 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=23.1
Q ss_pred eeeeeeeCCCCcccEEEEecCCc--cc----------CCCCCCCEEEec
Q 032478 89 GKVDEIFGPINESYFSVKMMEGI--VA----------TSYSLGDKFYID 125 (140)
Q Consensus 89 GKVdeIfGPi~~~yfsvKl~~gi--~a----------~sfk~gdk~yI~ 125 (140)
|.|.+.++ +-+|.|+++++. .+ ..+.+||++-+.
T Consensus 18 G~Vik~l~---n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve 63 (79)
T 3i4o_A 18 GRVVEPLP---NAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVE 63 (79)
T ss_dssp EEEEEEET---TTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEE
T ss_pred EEEEEEcC---CCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEE
Confidence 78888764 246889998872 22 156779988664
No 26
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=23.00 E-value=1.5e+02 Score=22.22 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=44.9
Q ss_pred CCCceEEEceeeeecc--CCeEEEeccCCCCCCC--CCceeeccce--eeeeeeeeeCCCCcccEEEEecC--CcccCCC
Q 032478 45 GPPAEVVEVSSFLHAC--EGDAVTKLTNEKIPYF--NAPIYLQNKT--QIGKVDEIFGPINESYFSVKMME--GIVATSY 116 (140)
Q Consensus 45 Gpp~~v~~lG~f~H~~--eg~lV~k~t~~~VPyf--na~Vy~enK~--~IGKVdeIfGPi~~~yfsvKl~~--gi~a~sf 116 (140)
-||++.+.+|++.-++ .|++-+++..+..-.| ...+|.++.. +.=+|.++- +.++. +-+|++. ...+..-
T Consensus 15 ~~~~~~v~VG~I~~~hGikGeVkV~~~Td~pe~~~~~~~~~l~~~~~~~~~~v~~~r-~~~~~-~ivkf~gi~dr~~Ae~ 92 (187)
T 2f1l_A 15 TPADDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGR-LHGKV-LAAKLKGLDDREEART 92 (187)
T ss_dssp ----CEEEEEEEEEEETTTTEEEEEECSSSGGGGGGCCEEEEEETTEEEEEEEEEEE-EETTE-EEEEETTCCSHHHHHT
T ss_pred CCCCCEEEEEEEeCCEeeCEEEEEEECCCCHHHhccCCEEEEecCCcEEEEEEEEEE-EECCE-EEEEEeCCCCHHHHHH
Confidence 4889999999998554 6999998743321111 3456654221 111344332 22222 5566632 2222233
Q ss_pred CCCCEEEecCCCcccc
Q 032478 117 SLGDKFYIDPSKLLPL 132 (140)
Q Consensus 117 k~gdk~yI~p~kllPl 132 (140)
..|..|||+.+.+-+|
T Consensus 93 L~G~~l~v~r~~lp~l 108 (187)
T 2f1l_A 93 FTGYEICIPRSELPSL 108 (187)
T ss_dssp TTTCEEEEEGGGSCC-
T ss_pred hCCCEEEEEHHHCCCC
Confidence 4489999999887555
No 27
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=22.23 E-value=84 Score=20.17 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=17.1
Q ss_pred CCcccEEEEecCCcccCCCCCCCEEEecCCCcccccCCC
Q 032478 98 INESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFL 136 (140)
Q Consensus 98 i~~~yfsvKl~~gi~a~sfk~gdk~yI~p~kllPl~rFl 136 (140)
...-|+.++.++ +|+|||.-+++--|+|+.
T Consensus 30 ~~~ey~~l~y~~---------~~~l~VPv~~~~~i~ry~ 59 (71)
T 3mlq_E 30 VKRDYLVLRYKG---------EGKLYLPVEQLPLLKRHP 59 (71)
T ss_dssp EEEEEEEEEETT---------TEEEEEESSSCC------
T ss_pred eeEEEEEEEECC---------CCEEEEEhhhhcceeeec
Confidence 334467777432 689999999988888876
No 28
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=22.02 E-value=52 Score=22.96 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=19.1
Q ss_pred cccCCCCCCCEEEecCCCccccc
Q 032478 111 IVATSYSLGDKFYIDPSKLLPLA 133 (140)
Q Consensus 111 i~a~sfk~gdk~yI~p~kllPl~ 133 (140)
|.+..+.+||.|.+.+...+|.+
T Consensus 37 v~~~~l~~GDiv~v~~G~~iPaD 59 (124)
T 2kij_A 37 VDVELVQRGDIIKVVPGGKFPVD 59 (124)
T ss_dssp EETTTCCTTCEEECCTTCBCSSC
T ss_pred EeHHHCCCCCEEEECCCCEEEee
Confidence 45567888999999999999876
No 29
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=20.83 E-value=33 Score=29.09 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=47.1
Q ss_pred eeeeeccCCeEEEec----cCCCCCCCCCceeeccceeeeeeeeeeCCCCcccEEEEecCCcccCCCCCCCEEEecCC
Q 032478 54 SSFLHACEGDAVTKL----TNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPS 127 (140)
Q Consensus 54 G~f~H~~eg~lV~k~----t~~~VPyfna~Vy~enK~~IGKVdeIfGPi~~~yfsvKl~~gi~a~sfk~gdk~yI~p~ 127 (140)
|++. ..+..+||+. +.+...|.+..|++......|+|++=||- .=+|++-..+++. +.|++++.--
T Consensus 409 g~v~-~~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~fg~--~G~~~~~f~~~~~-----~~d~v~~~~~ 478 (482)
T 1wb1_A 409 GKVK-IDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGT--KGLLTAEFSGNVE-----NRDKVILNRL 478 (482)
T ss_dssp EEEE-CCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTT--TTBBCCCBSSCCC-----SSCEEEEECC
T ss_pred CcEE-EcCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccCCC--CceEEEEecCCCC-----CCCeeeeehh
Confidence 4444 3567889986 22456789999999988878999999996 2346666665544 4699987643
Done!