BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032479
         (140 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HL8|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
 pdb|1HL8|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
 pdb|1HL9|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
           In Complex With A Mechanism Based Inhibitor
 pdb|1HL9|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
           In Complex With A Mechanism Based Inhibitor
          Length = 449

 Score = 28.1 bits (61), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 104 WPTLSVFLQRIPILGWLFQQPFVRSFFDRYRSRRVP 139
           W T +  L ++P+  W FQ P+   + +  R +  P
Sbjct: 43  WATPTGELGKVPMDAWFFQNPYAEWYENSLRIKESP 78


>pdb|2ZWY|A Chain A, Alpha-L-Fucosidase
 pdb|2ZWY|B Chain B, Alpha-L-Fucosidase
 pdb|2ZWZ|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
 pdb|2ZWZ|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
 pdb|2ZX5|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10
 pdb|2ZX5|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10
 pdb|2ZX6|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
 pdb|2ZX6|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
 pdb|2ZX7|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
 pdb|2ZX7|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
 pdb|2ZX8|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
 pdb|2ZX8|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
 pdb|2ZX9|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, B4
 pdb|2ZX9|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, B4
 pdb|2ZXA|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
 pdb|2ZXA|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
 pdb|2ZXB|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
 pdb|2ZXB|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
 pdb|2ZXD|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
 pdb|2ZXD|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
          Length = 455

 Score = 28.1 bits (61), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 104 WPTLSVFLQRIPILGWLFQQPFVRSFFDRYRSRRVP 139
           W T +  L ++P+  W FQ P+   + +  R +  P
Sbjct: 43  WATPTGELGKVPMDAWFFQNPYAEWYENSLRIKESP 78


>pdb|1ODU|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
           In Complex With Fucose
 pdb|1ODU|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
           In Complex With Fucose
          Length = 449

 Score = 28.1 bits (61), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 104 WPTLSVFLQRIPILGWLFQQPFVRSFFDRYRSRRVP 139
           W T +  L ++P+  W FQ P+   + +  R +  P
Sbjct: 43  WATPTGELGKVPMDAWFFQNPYAEWYENSLRIKESP 78


>pdb|2WSP|A Chain A, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
           Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
 pdb|2WSP|B Chain B, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
           Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
          Length = 449

 Score = 28.1 bits (61), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 104 WPTLSVFLQRIPILGWLFQQPFVRSFFDRYRSRRVP 139
           W T +  L ++P+  W FQ P+   + +  R +  P
Sbjct: 43  WATPTGELGKVPMDAWFFQNPYAEWYENSLRIKESP 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.332    0.146    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,695,799
Number of Sequences: 62578
Number of extensions: 81884
Number of successful extensions: 107
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 4
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)