BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032479
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q20263|GOT1_CAEEL Probable Golgi transport protein 1 OS=Caenorhabditis elegans
GN=F41C3.4 PE=3 SV=2
Length = 141
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
Query: 1 MVSFEMNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQF 60
M++FE++ K+IG+GLT FG FF FLG++ F D LLA+GN+LFI G++ IG++ T+ F
Sbjct: 1 MMNFEVSTTKQIGVGLTTFGFFFIFLGVLMFLDSALLAIGNLLFIVGITFIIGVQRTLVF 60
Query: 61 FMKRQNYKGTISFGVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWL 120
F + + KG+I F G V+ G+P+ GMI E +GFIVLF GF P + L+ IP + +
Sbjct: 61 FFEFRKLKGSILFFGGILVVLFGYPLFGMIAECWGFIVLFGGFLPGIVNLLRSIPGISTI 120
Query: 121 FQQPFVRSFFDRYRSR-RVPV 140
P +R DR + PV
Sbjct: 121 TYLPGIRQVLDRLAPESKYPV 141
>sp|Q9DCQ3|GOT1A_MOUSE Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1
Length = 133
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 5 EMNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKR 64
+ + +KIG+G+TGFG+FF GI+ +FD LLA GN+LF+ G+SL IGL+ T FF +R
Sbjct: 3 SITEWQKIGVGITGFGVFFILFGILLYFDSVLLAFGNLLFLTGLSLIIGLRRTFAFFFQR 62
Query: 65 QNYKGTISFGVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQ---RIPILGWLF 121
KGT F G V++ WP+LGM+LE YGFI LF GF+P + FL IP L LF
Sbjct: 63 HKLKGTSFFLGGVAIVLLRWPLLGMLLEAYGFISLFKGFFPVVFGFLGSAFNIPFLSTLF 122
Query: 122 QQ 123
Q+
Sbjct: 123 QK 124
>sp|Q2NKV8|GOT1A_BOVIN Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1
Length = 132
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 79/122 (64%), Gaps = 3/122 (2%)
Query: 5 EMNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKR 64
+ + +KIG+G TGFGIFF G++ +FD LLA GN+LF+ G+SL IGL+ T FF +R
Sbjct: 3 SITEWQKIGVGTTGFGIFFILFGMLLYFDSVLLAFGNLLFLTGLSLIIGLRRTFSFFFQR 62
Query: 65 QNYKGTISFGVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFL---QRIPILGWLF 121
+KGT F G V++ WP+LGM LETYGF LF GF+P FL IP L LF
Sbjct: 63 HKFKGTSFFLGGVVIVLLRWPLLGMCLETYGFFSLFRGFFPVAFGFLGSASNIPFLSALF 122
Query: 122 QQ 123
Q+
Sbjct: 123 QR 124
>sp|Q9CR60|GOT1B_MOUSE Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1
Length = 138
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 93/128 (72%)
Query: 5 EMNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKR 64
+ D +KIG+GLTGFG+FF F G+I FFDK LLA+GN+LF+AG++ IGL+ T +FF +R
Sbjct: 3 SLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQR 62
Query: 65 QNYKGTISFGVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQP 124
K T F G F V+IGWP++GMI E YGF +LF GF+P + F++R+P+LG L P
Sbjct: 63 HKVKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122
Query: 125 FVRSFFDR 132
+RSF D+
Sbjct: 123 GIRSFVDK 130
>sp|Q9Y3E0|GOT1B_HUMAN Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1
Length = 138
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 93/128 (72%)
Query: 5 EMNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKR 64
+ D +KIG+GLTGFG+FF F G+I FFDK LLA+GN+LF+AG++ IGL+ T +FF ++
Sbjct: 3 SLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQK 62
Query: 65 QNYKGTISFGVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQP 124
K T F G F V+IGWP++GMI E YGF +LF GF+P + F++R+P+LG L P
Sbjct: 63 HKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122
Query: 125 FVRSFFDR 132
+RSF D+
Sbjct: 123 GIRSFVDK 130
>sp|Q2YDE3|GOT1B_BOVIN Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1
Length = 138
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 93/128 (72%)
Query: 5 EMNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKR 64
+ D +KIG+GLTGFG+FF F G+I FFDK LLA+GN+LF+AG++ IGL+ T +FF ++
Sbjct: 3 SLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQK 62
Query: 65 QNYKGTISFGVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQP 124
K T F G F V+IGWP++GMI E YGF +LF GF+P + F++R+P+LG L P
Sbjct: 63 HKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122
Query: 125 FVRSFFDR 132
+RSF D+
Sbjct: 123 GIRSFVDK 130
>sp|Q6ZVE7|GOT1A_HUMAN Vesicle transport protein GOT1A OS=Homo sapiens GN=GOLT1A PE=2 SV=1
Length = 132
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 78/122 (63%), Gaps = 3/122 (2%)
Query: 5 EMNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKR 64
+ + +KIG+G+TGFGIFF G + +FD LLA GN+LF+ G+SL IGL+ T FF +R
Sbjct: 3 SITEWQKIGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQR 62
Query: 65 QNYKGTISFGVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFL---QRIPILGWLF 121
KGT G V++ WP+LGM LETYGF LF GF+P FL IP LG LF
Sbjct: 63 HKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGFLGNVCNIPFLGALF 122
Query: 122 QQ 123
++
Sbjct: 123 RR 124
>sp|Q54CL4|GOT1_DICDI Protein transport protein got1 homolog OS=Dictyostelium discoideum
GN=golt1 PE=3 SV=1
Length = 138
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 81/130 (62%), Gaps = 1/130 (0%)
Query: 7 NDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQN 66
D++KIG L+ G+FF FLG++ F D+ LLA+GN+L ++G+ L +GL+ T +FF +++
Sbjct: 3 TDQQKIGAMLSAMGLFFGFLGVLLFLDRNLLALGNLLLVSGIVLILGLQKTTKFFAQKKK 62
Query: 67 YKGTISFGVGF-FFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPF 125
KGTI F G +V W +GM++E +GF+ LF +P + L+++PI+G + P
Sbjct: 63 IKGTILFFFGIVVLLVTRWTFVGMVIEIFGFVNLFGDAFPIVISILRKLPIIGNILNHPL 122
Query: 126 VRSFFDRYRS 135
V + S
Sbjct: 123 VNRLLQKADS 132
>sp|Q03554|GOT1_YEAST Protein transport protein GOT1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GOT1 PE=1 SV=1
Length = 138
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 33 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVVIGWPILGMILE 92
D+ LLA+GNILF+ GV L IG + T FF + +G++ F VG F +++ W LG I+E
Sbjct: 30 DRALLALGNILFLIGVFLIIGSQKTYIFFTRPNKRRGSLFFLVGAFLILLKWTFLGFIIE 89
Query: 93 TYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDRYRSRRV 138
+ G I LF F+ + FL+ +PI+G + P + D+ RV
Sbjct: 90 SLGIIGLFGDFFGVIVQFLRSMPIIGPILSHPAIAPIVDKLAGVRV 135
>sp|Q9USJ2|GOT1_SCHPO Protein transport protein got1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=got1 PE=3 SV=1
Length = 129
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%)
Query: 6 MNDRKKIGLGLTGFGIFFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQ 65
++D +KIG+G T G F +GI FFD LL++GN+L + G + G ++ FF+++
Sbjct: 3 LSDLQKIGVGTTALGFLFMIMGIFMFFDGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKD 62
Query: 66 NYKGTISFGVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILG 118
G+ISF G + +PI+G +E GF LF F+P + FL+ +P +G
Sbjct: 63 RMLGSISFFSGLLLTLFHFPIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIG 115
>sp|Q8WHX1|YCF1_PSINU Putative membrane protein ycf1 OS=Psilotum nudum GN=ycf1 PE=3 SV=1
Length = 1703
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 22 FFTFLGIIFFFDKGLLAM--GNILFIAGVSL---TIGLKSTMQFFMKRQNYKGTISFGVG 76
F + +FF LL G+ILFI + L I S + + + +++ T S +
Sbjct: 166 LFRYSSNVFFLTSSLLGWLCGHILFINSIKLLLFRIEHDSPIIYILMKRSISRTFSILIS 225
Query: 77 F-FFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLFQQPFVRSFFDRYRS 135
FF+ +G + +I + + + S +++ + + WL++ P+ SFFD+YR
Sbjct: 226 ITFFLYLGRSPVPLITKKFADEITLSDQKIKENLWEESL----WLYR-PWPTSFFDQYRW 280
Query: 136 RR 137
R
Sbjct: 281 NR 282
>sp|P36371|TAP2_MOUSE Antigen peptide transporter 2 OS=Mus musculus GN=Tap2 PE=2 SV=1
Length = 702
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 15 GLTGFGIFFTF-LGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISF 73
GL G I T LG+++ GLL +G +L + G L + +T FF R GT S
Sbjct: 34 GLPGLWIEGTLRLGVLW----GLLKVGELLGLVGTLLPLLCLATPLFFSLRALVGGTAST 89
Query: 74 GVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLS 108
V V + G +L YG + L W LS
Sbjct: 90 SV----VRVASASWGWLLAGYGAVALSWAVWAVLS 120
>sp|Q7GF83|NU4LM_CALMU NADH-ubiquinone oxidoreductase chain 4L OS=Calomys musculinus
GN=MT-ND4L PE=3 SV=1
Length = 98
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 22 FFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVV 81
FF+ LG + F M +L + G+ LT+ + STM N + T+ + + +V
Sbjct: 13 FFSLLGTLIFRSH---LMSTLLCLEGMMLTLFIMSTMTAL----NSQSTVMYTIPIVMLV 65
Query: 82 -------IGWPILGMILETYG 95
IG +L MI TYG
Sbjct: 66 FAACEAAIGLALLAMISNTYG 86
>sp|O21783|NU4LM_CALLC NADH-ubiquinone oxidoreductase chain 4L OS=Calomys laucha
GN=MT-ND4L PE=3 SV=1
Length = 98
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 22 FFTFLGIIFFFDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNYKGTISFGVGFFFVV 81
FF+ LG + F M +L + G+ LT+ + STM N + T+ + + +V
Sbjct: 13 FFSLLGTLIFRSH---LMSTLLCLEGMMLTLFIMSTMTAL----NSQSTVMYTIPIVMLV 65
Query: 82 -------IGWPILGMILETYG 95
IG +L MI TYG
Sbjct: 66 FAACEAAIGLALLAMISNTYG 86
>sp|Q3ECE2|FB85_ARATH Putative F-box protein At1g70960 OS=Arabidopsis thaliana
GN=At1g70960 PE=4 SV=1
Length = 369
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 62 MKRQNYKGTISFGVGFFFVVIGWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWLF 121
+K ++ GT+ +F IG L + + F ++ T + L+R I G +
Sbjct: 292 IKISHWNGTVDGKTFYFKGTIGTKELAFAPDYWFGEQHFVSYYDTETKNLRRFDIEGMVD 351
Query: 122 QQPFVRSFFDRYRS 135
Q FVR+FFD S
Sbjct: 352 QDDFVRTFFDHVDS 365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.337 0.154 0.494
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,405,006
Number of Sequences: 539616
Number of extensions: 1962795
Number of successful extensions: 7303
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 7273
Number of HSP's gapped (non-prelim): 60
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)